Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006030 | sp|Q9LZX1|LOR15_ARATH | 40.526 | 190 | 102 | 6 | 2 | 185 | 24 | 208 | 2.80e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006030 | G7I889 | 96.216 | 185 | 7 | 0 | 1 | 185 | 1 | 185 | 3.42e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006030 | Msa0823440 | 0.804669 | 1.933061e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006030 | MtrunA17_Chr1g0150081 | 96.216 | 185 | 7 | 0 | 1 | 185 | 1 | 185 | 6.58e-132 | 367 |
| Msa0006030 | MtrunA17_Chr7g0244371 | 56.085 | 189 | 73 | 5 | 1 | 184 | 18 | 201 | 3.69e-65 | 199 |
| Msa0006030 | MtrunA17_Chr7g0244321 | 54.787 | 188 | 74 | 6 | 4 | 185 | 22 | 204 | 5.32e-61 | 188 |
| Msa0006030 | MtrunA17_Chr7g0244331 | 54.255 | 188 | 75 | 6 | 4 | 185 | 22 | 204 | 7.17e-60 | 186 |
| Msa0006030 | MtrunA17_Chr7g0244341 | 52.880 | 191 | 79 | 5 | 1 | 185 | 19 | 204 | 8.26e-60 | 186 |
| Msa0006030 | MtrunA17_Chr7g0244361 | 49.246 | 199 | 77 | 5 | 1 | 184 | 43 | 232 | 2.00e-55 | 175 |
| Msa0006030 | MtrunA17_Chr4g0013291 | 42.857 | 189 | 93 | 6 | 3 | 185 | 13 | 192 | 9.49e-43 | 141 |
| Msa0006030 | MtrunA17_Chr1g0150091 | 59.836 | 122 | 32 | 2 | 80 | 185 | 11 | 131 | 2.88e-40 | 133 |
| Msa0006030 | MtrunA17_Chr1g0150101 | 74.684 | 79 | 20 | 0 | 107 | 185 | 1 | 79 | 8.14e-35 | 117 |
| Msa0006030 | MtrunA17_Chr7g0244111 | 54.630 | 108 | 45 | 2 | 81 | 184 | 8 | 115 | 1.65e-34 | 118 |
| Msa0006030 | MtrunA17_Chr4g0003271 | 23.656 | 186 | 133 | 6 | 5 | 185 | 7 | 188 | 5.63e-12 | 62.0 |
| Msa0006030 | MtrunA17_Chr5g0432221 | 30.435 | 184 | 99 | 8 | 17 | 182 | 37 | 209 | 9.37e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006030 | AT5G01750.2 | 40.526 | 190 | 102 | 6 | 2 | 185 | 24 | 208 | 2.85e-46 | 151 |
| Msa0006030 | AT3G11740.1 | 44.974 | 189 | 92 | 7 | 4 | 185 | 2 | 185 | 2.49e-45 | 148 |
| Msa0006030 | AT2G14560.1 | 38.172 | 186 | 104 | 5 | 5 | 184 | 7 | 187 | 5.34e-37 | 127 |
| Msa0006030 | AT1G33840.1 | 35.979 | 189 | 110 | 5 | 2 | 184 | 24 | 207 | 2.73e-36 | 126 |
| Msa0006030 | AT2G14560.3 | 38.172 | 186 | 104 | 5 | 5 | 184 | 67 | 247 | 5.60e-36 | 126 |
| Msa0006030 | AT5G01750.1 | 39.869 | 153 | 84 | 5 | 2 | 151 | 24 | 171 | 1.17e-35 | 123 |
| Msa0006030 | AT3G16900.1 | 35.519 | 183 | 96 | 6 | 5 | 185 | 15 | 177 | 7.29e-33 | 116 |
| Msa0006030 | AT2G14560.2 | 36.842 | 152 | 88 | 4 | 5 | 153 | 7 | 153 | 2.49e-28 | 104 |
| Msa0006030 | AT1G33840.2 | 35.484 | 155 | 92 | 4 | 2 | 153 | 24 | 173 | 4.09e-28 | 103 |
| Msa0006030 | AT2G14560.4 | 36.842 | 152 | 88 | 4 | 5 | 153 | 67 | 213 | 2.64e-27 | 103 |
| Msa0006030 | AT3G56180.1 | 30.890 | 191 | 118 | 6 | 2 | 185 | 15 | 198 | 9.07e-25 | 95.9 |
| Msa0006030 | AT3G56180.2 | 31.088 | 193 | 117 | 7 | 2 | 185 | 15 | 200 | 6.51e-24 | 94.0 |
| Msa0006030 | AT3G10986.1 | 29.381 | 194 | 120 | 5 | 4 | 185 | 3 | 191 | 1.17e-21 | 87.8 |
Find 41 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGAGGGCTGATTA+TGG | 0.310803 | 1_1:-8812996 | None:intergenic |
| AATATTAGAGATGTGTTTCT+TGG | 0.319557 | 1_1:-8812937 | None:intergenic |
| CAAATTTATCTCAACAATCT+TGG | 0.324672 | 1_1:+8813578 | Msa0006030:CDS |
| TGAATGCATAATCGATGTTT+GGG | 0.334963 | 1_1:-8813779 | None:intergenic |
| ATGAATGCATAATCGATGTT+TGG | 0.340520 | 1_1:-8813780 | None:intergenic |
| CGGTTCTTAGTTGATGCTAA+TGG | 0.343712 | 1_1:+8813273 | Msa0006030:CDS |
| CTAGTAAAGATAAGATCATT+TGG | 0.367319 | 1_1:-8813466 | None:intergenic |
| AACCTGAGCAACTACGTTGT+TGG | 0.404004 | 1_1:-8813620 | None:intergenic |
| TTCTAGCAGCAGATGATTGT+TGG | 0.405704 | 1_1:+8813416 | Msa0006030:CDS |
| TCTTGTAGGTTGTTTAATCA+AGG | 0.409735 | 1_1:-8813821 | None:intergenic |
| CAAATGATCTTATCTTTACT+AGG | 0.420505 | 1_1:+8813467 | Msa0006030:CDS |
| TGTTAGCAGGGAAAAGTTCA+TGG | 0.426125 | 1_1:+8813746 | Msa0006030:CDS |
| TGTTGTGATTATCAAATCAA+TGG | 0.429127 | 1_1:-8813148 | None:intergenic |
| AACTAAGAACCGGTGTTGGC+GGG | 0.442279 | 1_1:-8813262 | None:intergenic |
| TGATATTAATTCAATCATCA+TGG | 0.466431 | 1_1:+8812967 | Msa0006030:exon |
| CGATCTACGGAGATGAAGAA+TGG | 0.473284 | 1_1:-8813301 | None:intergenic |
| AGCCCTCAATATTGTGCTCC+AGG | 0.475888 | 1_1:+8813004 | Msa0006030:CDS |
| GTTCATCATTGATGCAACTA+AGG | 0.493660 | 1_1:+8813494 | Msa0006030:CDS |
| CATTAGCATCAACTAAGAAC+CGG | 0.495060 | 1_1:-8813272 | None:intergenic |
| AGCGTGGCAATATTGTTAGC+AGG | 0.495716 | 1_1:+8813733 | Msa0006030:CDS |
| ATCCAACAACGTAGTTGCTC+AGG | 0.499631 | 1_1:+8813618 | Msa0006030:CDS |
| CAACTAAGAACCGGTGTTGG+CGG | 0.506342 | 1_1:-8813263 | None:intergenic |
| CTTGTAGGTTGTTTAATCAA+GGG | 0.509070 | 1_1:-8813820 | None:intergenic |
| TTGATGAACGTACCGATCTA+CGG | 0.520939 | 1_1:-8813314 | None:intergenic |
| TACCTGGAGCACAATATTGA+GGG | 0.535069 | 1_1:-8813006 | None:intergenic |
| GATCTACGGAGATGAAGAAT+GGG | 0.541516 | 1_1:-8813300 | None:intergenic |
| ATACCTGGAGCACAATATTG+AGG | 0.542310 | 1_1:-8813007 | None:intergenic |
| CAATCTTGGAATGTTTACAT+TGG | 0.552539 | 1_1:+8813592 | Msa0006030:CDS |
| CATTCTTCATCTCCGTAGAT+CGG | 0.556024 | 1_1:+8813302 | Msa0006030:CDS |
| GATTGTTGGAAAGCATATAG+AGG | 0.563993 | 1_1:+8813430 | Msa0006030:CDS |
| GTTGTGATTATCAAATCAAT+GGG | 0.566325 | 1_1:-8813147 | None:intergenic |
| ACTAAGAACCGGTGTTGGCG+GGG | 0.574675 | 1_1:-8813261 | None:intergenic |
| GACTATGAGAGATAACTTCA+CGG | 0.579627 | 1_1:+8813176 | Msa0006030:CDS |
| CATCAACTAAGAACCGGTGT+TGG | 0.588205 | 1_1:-8813266 | None:intergenic |
| TCGTAACACCCCGCCAACAC+CGG | 0.589651 | 1_1:+8813253 | Msa0006030:CDS |
| GCGTGGCAATATTGTTAGCA+GGG | 0.615963 | 1_1:+8813734 | Msa0006030:CDS |
| CATCGATTATGCATTCATTG+TGG | 0.620012 | 1_1:+8813785 | Msa0006030:CDS |
| GTGTTGGCGGGGTGTTACGA+TGG | 0.625287 | 1_1:-8813250 | None:intergenic |
| TTGCAGATAAATAAGAAGCG+TGG | 0.668205 | 1_1:+8813717 | Msa0006030:intron |
| GAATGCATAATCGATGTTTG+GGG | 0.710689 | 1_1:-8813778 | None:intergenic |
| ATTTGATAATCACAACAGAG+AGG | 0.729502 | 1_1:+8813154 | Msa0006030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAAATAAGTTTTAATTA+AGG | - | chr1_1:8813066-8813085 | None:intergenic | 10.0% |
| !!! | AATCAAATAAGTTTTAATTA+AGG | - | chr1_1:8813066-8813085 | None:intergenic | 10.0% |
| !!! | TATCCTTTTAACAATTTTTT+TGG | + | chr1_1:8813103-8813122 | Msa0006030:intron | 15.0% |
| !! | AAACCAAAAAAATTGTTAAA+AGG | - | chr1_1:8813109-8813128 | None:intergenic | 15.0% |
| !!! | TATCCTTTTAACAATTTTTT+TGG | + | chr1_1:8813103-8813122 | Msa0006030:intron | 15.0% |
| !! | AAACCAAAAAAATTGTTAAA+AGG | - | chr1_1:8813109-8813128 | None:intergenic | 15.0% |
| !! | TGATATTAATTCAATCATCA+TGG | + | chr1_1:8812967-8812986 | Msa0006030:exon | 20.0% |
| !!! | AGATTTTTGCAAAAAAGAAA+TGG | + | chr1_1:8813654-8813673 | Msa0006030:intron | 20.0% |
| !! | TGATATTAATTCAATCATCA+TGG | + | chr1_1:8812967-8812986 | Msa0006030:exon | 20.0% |
| !!! | AGATTTTTGCAAAAAAGAAA+TGG | + | chr1_1:8813654-8813673 | Msa0006030:intron | 20.0% |
| ! | AATATTAGAGATGTGTTTCT+TGG | - | chr1_1:8812940-8812959 | None:intergenic | 25.0% |
| ! | GTTGTGATTATCAAATCAAT+GGG | - | chr1_1:8813150-8813169 | None:intergenic | 25.0% |
| ! | TGTTGTGATTATCAAATCAA+TGG | - | chr1_1:8813151-8813170 | None:intergenic | 25.0% |
| ! | ATGTGTTTCTTAGTTGAAAA+TGG | + | chr1_1:8813345-8813364 | Msa0006030:intron | 25.0% |
| ! | CTAGTAAAGATAAGATCATT+TGG | - | chr1_1:8813469-8813488 | None:intergenic | 25.0% |
| ! | CAAATGATCTTATCTTTACT+AGG | + | chr1_1:8813467-8813486 | Msa0006030:CDS | 25.0% |
| !! | GACCAAATTAAATGTGTTTT+TGG | + | chr1_1:8813516-8813535 | Msa0006030:CDS | 25.0% |
| ! | TGCCAAAAACACATTTAATT+TGG | - | chr1_1:8813521-8813540 | None:intergenic | 25.0% |
| ! | CAAATTTATCTCAACAATCT+TGG | + | chr1_1:8813578-8813597 | Msa0006030:CDS | 25.0% |
| !! | ATAATCACAGTTATTGGTTA+TGG | - | chr1_1:8813698-8813717 | None:intergenic | 25.0% |
| ! | AATATTAGAGATGTGTTTCT+TGG | - | chr1_1:8812940-8812959 | None:intergenic | 25.0% |
| ! | GTTGTGATTATCAAATCAAT+GGG | - | chr1_1:8813150-8813169 | None:intergenic | 25.0% |
| ! | TGTTGTGATTATCAAATCAA+TGG | - | chr1_1:8813151-8813170 | None:intergenic | 25.0% |
| ! | ATGTGTTTCTTAGTTGAAAA+TGG | + | chr1_1:8813345-8813364 | Msa0006030:intron | 25.0% |
| ! | CTAGTAAAGATAAGATCATT+TGG | - | chr1_1:8813469-8813488 | None:intergenic | 25.0% |
| ! | CAAATGATCTTATCTTTACT+AGG | + | chr1_1:8813467-8813486 | Msa0006030:CDS | 25.0% |
| !! | GACCAAATTAAATGTGTTTT+TGG | + | chr1_1:8813516-8813535 | Msa0006030:CDS | 25.0% |
| ! | TGCCAAAAACACATTTAATT+TGG | - | chr1_1:8813521-8813540 | None:intergenic | 25.0% |
| ! | CAAATTTATCTCAACAATCT+TGG | + | chr1_1:8813578-8813597 | Msa0006030:CDS | 25.0% |
| !! | ATAATCACAGTTATTGGTTA+TGG | - | chr1_1:8813698-8813717 | None:intergenic | 25.0% |
| AAATTGTTCCGAAAAGATGA+TGG | - | chr1_1:8813036-8813055 | None:intergenic | 30.0% | |
| ! | ATTTGATAATCACAACAGAG+AGG | + | chr1_1:8813154-8813173 | Msa0006030:CDS | 30.0% |
| !! | TTTTTGGCAAATAACAACAC+AGG | + | chr1_1:8813532-8813551 | Msa0006030:CDS | 30.0% |
| CAATCTTGGAATGTTTACAT+TGG | + | chr1_1:8813592-8813611 | Msa0006030:CDS | 30.0% | |
| TCTGCAATAATCACAGTTAT+TGG | - | chr1_1:8813704-8813723 | None:intergenic | 30.0% | |
| TGAATGCATAATCGATGTTT+GGG | - | chr1_1:8813782-8813801 | None:intergenic | 30.0% | |
| ATGAATGCATAATCGATGTT+TGG | - | chr1_1:8813783-8813802 | None:intergenic | 30.0% | |
| AAATTGTTCCGAAAAGATGA+TGG | - | chr1_1:8813036-8813055 | None:intergenic | 30.0% | |
| ! | ATTTGATAATCACAACAGAG+AGG | + | chr1_1:8813154-8813173 | Msa0006030:CDS | 30.0% |
| !! | TTTTTGGCAAATAACAACAC+AGG | + | chr1_1:8813532-8813551 | Msa0006030:CDS | 30.0% |
| CAATCTTGGAATGTTTACAT+TGG | + | chr1_1:8813592-8813611 | Msa0006030:CDS | 30.0% | |
| TCTGCAATAATCACAGTTAT+TGG | - | chr1_1:8813704-8813723 | None:intergenic | 30.0% | |
| TGAATGCATAATCGATGTTT+GGG | - | chr1_1:8813782-8813801 | None:intergenic | 30.0% | |
| ATGAATGCATAATCGATGTT+TGG | - | chr1_1:8813783-8813802 | None:intergenic | 30.0% | |
| ACAATATTGAGGGCTGATTA+TGG | - | chr1_1:8812999-8813018 | None:intergenic | 35.0% | |
| ! | AAAAGATGATGGTTCATACC+TGG | - | chr1_1:8813025-8813044 | None:intergenic | 35.0% |
| ! | GGTATGAACCATCATCTTTT+CGG | + | chr1_1:8813025-8813044 | Msa0006030:intron | 35.0% |
| GACTATGAGAGATAACTTCA+CGG | + | chr1_1:8813176-8813195 | Msa0006030:CDS | 35.0% | |
| CATTAGCATCAACTAAGAAC+CGG | - | chr1_1:8813275-8813294 | None:intergenic | 35.0% | |
| ! | GATTGTTGGAAAGCATATAG+AGG | + | chr1_1:8813430-8813449 | Msa0006030:CDS | 35.0% |
| GTTCATCATTGATGCAACTA+AGG | + | chr1_1:8813494-8813513 | Msa0006030:CDS | 35.0% | |
| TTGCAGATAAATAAGAAGCG+TGG | + | chr1_1:8813717-8813736 | Msa0006030:intron | 35.0% | |
| GAATGCATAATCGATGTTTG+GGG | - | chr1_1:8813781-8813800 | None:intergenic | 35.0% | |
| ! | CATCGATTATGCATTCATTG+TGG | + | chr1_1:8813785-8813804 | Msa0006030:CDS | 35.0% |
| ACAATATTGAGGGCTGATTA+TGG | - | chr1_1:8812999-8813018 | None:intergenic | 35.0% | |
| ! | AAAAGATGATGGTTCATACC+TGG | - | chr1_1:8813025-8813044 | None:intergenic | 35.0% |
| ! | GGTATGAACCATCATCTTTT+CGG | + | chr1_1:8813025-8813044 | Msa0006030:intron | 35.0% |
| GACTATGAGAGATAACTTCA+CGG | + | chr1_1:8813176-8813195 | Msa0006030:CDS | 35.0% | |
| CATTAGCATCAACTAAGAAC+CGG | - | chr1_1:8813275-8813294 | None:intergenic | 35.0% | |
| ! | GATTGTTGGAAAGCATATAG+AGG | + | chr1_1:8813430-8813449 | Msa0006030:CDS | 35.0% |
| GTTCATCATTGATGCAACTA+AGG | + | chr1_1:8813494-8813513 | Msa0006030:CDS | 35.0% | |
| TTGCAGATAAATAAGAAGCG+TGG | + | chr1_1:8813717-8813736 | Msa0006030:intron | 35.0% | |
| GAATGCATAATCGATGTTTG+GGG | - | chr1_1:8813781-8813800 | None:intergenic | 35.0% | |
| ! | CATCGATTATGCATTCATTG+TGG | + | chr1_1:8813785-8813804 | Msa0006030:CDS | 35.0% |
| TACCTGGAGCACAATATTGA+GGG | - | chr1_1:8813009-8813028 | None:intergenic | 40.0% | |
| ATACCTGGAGCACAATATTG+AGG | - | chr1_1:8813010-8813029 | None:intergenic | 40.0% | |
| ! | CGGTTCTTAGTTGATGCTAA+TGG | + | chr1_1:8813273-8813292 | Msa0006030:CDS | 40.0% |
| GATCTACGGAGATGAAGAAT+GGG | - | chr1_1:8813303-8813322 | None:intergenic | 40.0% | |
| CATTCTTCATCTCCGTAGAT+CGG | + | chr1_1:8813302-8813321 | Msa0006030:CDS | 40.0% | |
| ! | TTGATGAACGTACCGATCTA+CGG | - | chr1_1:8813317-8813336 | None:intergenic | 40.0% |
| TTCTAGCAGCAGATGATTGT+TGG | + | chr1_1:8813416-8813435 | Msa0006030:CDS | 40.0% | |
| TGTTAGCAGGGAAAAGTTCA+TGG | + | chr1_1:8813746-8813765 | Msa0006030:CDS | 40.0% | |
| TACCTGGAGCACAATATTGA+GGG | - | chr1_1:8813009-8813028 | None:intergenic | 40.0% | |
| ATACCTGGAGCACAATATTG+AGG | - | chr1_1:8813010-8813029 | None:intergenic | 40.0% | |
| ! | CGGTTCTTAGTTGATGCTAA+TGG | + | chr1_1:8813273-8813292 | Msa0006030:CDS | 40.0% |
| GATCTACGGAGATGAAGAAT+GGG | - | chr1_1:8813303-8813322 | None:intergenic | 40.0% | |
| CATTCTTCATCTCCGTAGAT+CGG | + | chr1_1:8813302-8813321 | Msa0006030:CDS | 40.0% | |
| ! | TTGATGAACGTACCGATCTA+CGG | - | chr1_1:8813317-8813336 | None:intergenic | 40.0% |
| TTCTAGCAGCAGATGATTGT+TGG | + | chr1_1:8813416-8813435 | Msa0006030:CDS | 40.0% | |
| TGTTAGCAGGGAAAAGTTCA+TGG | + | chr1_1:8813746-8813765 | Msa0006030:CDS | 40.0% | |
| CATCAACTAAGAACCGGTGT+TGG | - | chr1_1:8813269-8813288 | None:intergenic | 45.0% | |
| CGATCTACGGAGATGAAGAA+TGG | - | chr1_1:8813304-8813323 | None:intergenic | 45.0% | |
| ATCCAACAACGTAGTTGCTC+AGG | + | chr1_1:8813618-8813637 | Msa0006030:CDS | 45.0% | |
| AACCTGAGCAACTACGTTGT+TGG | - | chr1_1:8813623-8813642 | None:intergenic | 45.0% | |
| AGCGTGGCAATATTGTTAGC+AGG | + | chr1_1:8813733-8813752 | Msa0006030:CDS | 45.0% | |
| GCGTGGCAATATTGTTAGCA+GGG | + | chr1_1:8813734-8813753 | Msa0006030:CDS | 45.0% | |
| CATCAACTAAGAACCGGTGT+TGG | - | chr1_1:8813269-8813288 | None:intergenic | 45.0% | |
| CGATCTACGGAGATGAAGAA+TGG | - | chr1_1:8813304-8813323 | None:intergenic | 45.0% | |
| ATCCAACAACGTAGTTGCTC+AGG | + | chr1_1:8813618-8813637 | Msa0006030:CDS | 45.0% | |
| AACCTGAGCAACTACGTTGT+TGG | - | chr1_1:8813623-8813642 | None:intergenic | 45.0% | |
| AGCGTGGCAATATTGTTAGC+AGG | + | chr1_1:8813733-8813752 | Msa0006030:CDS | 45.0% | |
| GCGTGGCAATATTGTTAGCA+GGG | + | chr1_1:8813734-8813753 | Msa0006030:CDS | 45.0% | |
| AGCCCTCAATATTGTGCTCC+AGG | + | chr1_1:8813004-8813023 | Msa0006030:CDS | 50.0% | |
| !! | AACTAAGAACCGGTGTTGGC+GGG | - | chr1_1:8813265-8813284 | None:intergenic | 50.0% |
| ! | CAACTAAGAACCGGTGTTGG+CGG | - | chr1_1:8813266-8813285 | None:intergenic | 50.0% |
| AGCCCTCAATATTGTGCTCC+AGG | + | chr1_1:8813004-8813023 | Msa0006030:CDS | 50.0% | |
| !! | AACTAAGAACCGGTGTTGGC+GGG | - | chr1_1:8813265-8813284 | None:intergenic | 50.0% |
| ! | CAACTAAGAACCGGTGTTGG+CGG | - | chr1_1:8813266-8813285 | None:intergenic | 50.0% |
| !! | ACTAAGAACCGGTGTTGGCG+GGG | - | chr1_1:8813264-8813283 | None:intergenic | 55.0% |
| !! | ACTAAGAACCGGTGTTGGCG+GGG | - | chr1_1:8813264-8813283 | None:intergenic | 55.0% |
| ! | GTGTTGGCGGGGTGTTACGA+TGG | - | chr1_1:8813253-8813272 | None:intergenic | 60.0% |
| TCGTAACACCCCGCCAACAC+CGG | + | chr1_1:8813253-8813272 | Msa0006030:CDS | 60.0% | |
| ! | GTGTTGGCGGGGTGTTACGA+TGG | - | chr1_1:8813253-8813272 | None:intergenic | 60.0% |
| TCGTAACACCCCGCCAACAC+CGG | + | chr1_1:8813253-8813272 | Msa0006030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8812901 | 8813830 | 8812901 | ID=Msa0006030;Name=Msa0006030 |
| chr1_1 | mRNA | 8812901 | 8813830 | 8812901 | ID=Msa0006030-mRNA-1;Parent=Msa0006030;Name=Msa0006030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=85|0.66|0.25|1|1|1|4|0|185 |
| chr1_1 | exon | 8812901 | 8813025 | 8812901 | ID=Msa0006030-mRNA-1:exon:3126;Parent=Msa0006030-mRNA-1 |
| chr1_1 | exon | 8813139 | 8813323 | 8813139 | ID=Msa0006030-mRNA-1:exon:3127;Parent=Msa0006030-mRNA-1 |
| chr1_1 | exon | 8813415 | 8813639 | 8813415 | ID=Msa0006030-mRNA-1:exon:3128;Parent=Msa0006030-mRNA-1 |
| chr1_1 | exon | 8813723 | 8813830 | 8813723 | ID=Msa0006030-mRNA-1:exon:3129;Parent=Msa0006030-mRNA-1 |
| chr1_1 | five_prime_UTR | 8812901 | 8812985 | 8812901 | ID=Msa0006030-mRNA-1:five_prime_utr;Parent=Msa0006030-mRNA-1 |
| chr1_1 | CDS | 8812986 | 8813025 | 8812986 | ID=Msa0006030-mRNA-1:cds;Parent=Msa0006030-mRNA-1 |
| chr1_1 | CDS | 8813139 | 8813323 | 8813139 | ID=Msa0006030-mRNA-1:cds;Parent=Msa0006030-mRNA-1 |
| chr1_1 | CDS | 8813415 | 8813639 | 8813415 | ID=Msa0006030-mRNA-1:cds;Parent=Msa0006030-mRNA-1 |
| chr1_1 | CDS | 8813723 | 8813830 | 8813723 | ID=Msa0006030-mRNA-1:cds;Parent=Msa0006030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
