Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006120 | MCH83557.1 | 60.767 | 339 | 124 | 3 | 48 | 386 | 212 | 541 | 2.26e-118 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006120 | Msa0014710 | 0.821362 | 4.203044e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGACAATCAAGATGAAATT+TGG | 0.110861 | 1_1:+8884171 | Msa0006120:CDS |
| ATTTGTATATACCACAAATT+TGG | 0.174468 | 1_1:-8884293 | None:intergenic |
| ATTTGACCATAAGTTAATTC+TGG | 0.204268 | 1_1:-8885062 | None:intergenic |
| GTTCACTTTAGAAGGAAAAT+TGG | 0.215897 | 1_1:+8887214 | Msa0006120:three_prime_UTR |
| CAAGAGATTTCATTTAAAAT+AGG | 0.220992 | 1_1:+8887507 | Msa0006120:three_prime_UTR |
| GGTAAGAGATTGAGTGGTTT+TGG | 0.249516 | 1_1:-8886230 | None:intergenic |
| TATTAAAGATGGTTCTAATA+AGG | 0.252923 | 1_1:+8885769 | Msa0006120:CDS |
| GCTTTCCAATGACTGCTATT+AGG | 0.264132 | 1_1:-8884951 | None:intergenic |
| AAACTTAGGTTCACTTTAGA+AGG | 0.267450 | 1_1:+8887206 | Msa0006120:three_prime_UTR |
| AACAGGTGTTTCTTTAATAT+TGG | 0.271581 | 1_1:-8885858 | None:intergenic |
| CGATTATTCGTTTCAATTTG+TGG | 0.281439 | 1_1:+8884242 | Msa0006120:CDS |
| AAAGATTGAGGAAATCATTC+AGG | 0.295749 | 1_1:+8885988 | Msa0006120:CDS |
| ATTTCTCTAAAATAAAATCT+AGG | 0.302664 | 1_1:+8885330 | Msa0006120:CDS |
| TCTCAATTTCGGTTATTAAC+TGG | 0.311527 | 1_1:+8886942 | Msa0006120:CDS |
| CCACAACCACTTCTCAATTT+CGG | 0.317572 | 1_1:+8886931 | Msa0006120:CDS |
| AAGAGAAATTAATCTTCTTA+AGG | 0.321850 | 1_1:+8885898 | Msa0006120:CDS |
| AATTACCCAGAATTAACTTA+TGG | 0.322764 | 1_1:+8885056 | Msa0006120:CDS |
| GCTGTTGTTTCTTCTGTTGT+TGG | 0.337398 | 1_1:+8887067 | Msa0006120:intron |
| TGCCATAAATGTGGCAAAAC+TGG | 0.345541 | 1_1:+8885413 | Msa0006120:CDS |
| CTGTTGTTTCTTCTGTTGTT+GGG | 0.353725 | 1_1:+8887068 | Msa0006120:CDS |
| AGACAATCAAGATGAAATTT+GGG | 0.357674 | 1_1:+8884172 | Msa0006120:CDS |
| CTTAAATCATTAGTAGAAAC+AGG | 0.358718 | 1_1:-8885875 | None:intergenic |
| AGAGAAATTAATCTTCTTAA+GGG | 0.377032 | 1_1:+8885899 | Msa0006120:CDS |
| GAACAATTTGCCTTCGACTT+AGG | 0.379249 | 1_1:+8885194 | Msa0006120:CDS |
| AAGACTTCACTGATTCTATA+AGG | 0.385181 | 1_1:-8885818 | None:intergenic |
| TTTGACCATAAGTTAATTCT+GGG | 0.387121 | 1_1:-8885061 | None:intergenic |
| ATTAGAGACTTTAAAGATTG+AGG | 0.387667 | 1_1:+8885976 | Msa0006120:CDS |
| AAACTGGCTGAAAAGAAATA+AGG | 0.390954 | 1_1:-8887107 | None:intergenic |
| ACTTTGGTTATACTGATTCC+AGG | 0.393242 | 1_1:+8887243 | Msa0006120:three_prime_UTR |
| AACATCATAAGTCTTCTAAT+AGG | 0.400523 | 1_1:+8885291 | Msa0006120:CDS |
| TGCCTTCGACTTAGGAAAAC+CGG | 0.400626 | 1_1:+8885202 | Msa0006120:CDS |
| TACTCCGAAAACGGCCATTC+CGG | 0.402758 | 1_1:+8886869 | Msa0006120:CDS |
| GACAATCAAGTCCAAATTTG+TGG | 0.408648 | 1_1:+8884282 | Msa0006120:CDS |
| CCACAACCACTTCTCAATTC+CGG | 0.412821 | 1_1:+8886900 | Msa0006120:CDS |
| TTAGAATTTCTTATTAAAGA+TGG | 0.420236 | 1_1:+8885758 | Msa0006120:CDS |
| CAACCCACAGCTTGTATTAC+GGG | 0.421456 | 1_1:-8884213 | None:intergenic |
| AAGTTTATCTCCTCCAGCTT+GGG | 0.424909 | 1_1:-8886251 | None:intergenic |
| ACAACCCACAGCTTGTATTA+CGG | 0.425952 | 1_1:-8884214 | None:intergenic |
| GTAATGAAGAGATAGACTAT+TGG | 0.430428 | 1_1:+8885630 | Msa0006120:CDS |
| CTGTTAGCACTTCTTGTGGT+GGG | 0.432909 | 1_1:+8887152 | Msa0006120:CDS |
| CCACCACAAGAAGTGCTAAC+AGG | 0.435981 | 1_1:-8887151 | None:intergenic |
| AGATGGTTCTAATAAGGAAA+AGG | 0.438827 | 1_1:+8885775 | Msa0006120:CDS |
| GAAATTGCTTTGGTTGATAG+TGG | 0.439884 | 1_1:+8886157 | Msa0006120:CDS |
| GTCATTATGCCACTCAATGC+TGG | 0.442489 | 1_1:+8885435 | Msa0006120:CDS |
| GTACAAACAGAAGCCAAAAC+TGG | 0.444749 | 1_1:-8887123 | None:intergenic |
| TCTTTAAGAAATAGAAATGA+TGG | 0.446359 | 1_1:+8885023 | Msa0006120:CDS |
| AAAATCCTAATAGCAGTCAT+TGG | 0.447815 | 1_1:+8884946 | Msa0006120:CDS |
| TGTTTCTTCTGTTGTTGGGT+GGG | 0.449729 | 1_1:+8887072 | Msa0006120:CDS |
| TTCTCCCGTAATACAAGCTG+TGG | 0.464324 | 1_1:+8884209 | Msa0006120:CDS |
| GGAAAATTGGAAAGGCACTT+TGG | 0.464953 | 1_1:+8887227 | Msa0006120:three_prime_UTR |
| GATGGTTCTAATAAGGAAAA+GGG | 0.466383 | 1_1:+8885776 | Msa0006120:CDS |
| GTGCAGATACGCTCTCCAAC+AGG | 0.468985 | 1_1:-8884840 | None:intergenic |
| GAAGTTTATCTCCTCCAGCT+TGG | 0.474206 | 1_1:-8886252 | None:intergenic |
| TTGTTTCTTCTGTTGTTGGG+TGG | 0.475844 | 1_1:+8887071 | Msa0006120:CDS |
| TTATGTCATTACATAAAGAA+AGG | 0.482955 | 1_1:-8885109 | None:intergenic |
| TTCTTCTGTTGTTGGGTGGG+TGG | 0.484930 | 1_1:+8887075 | Msa0006120:CDS |
| TAAGGTGTCTCAATAATTTG+AGG | 0.491142 | 1_1:-8885800 | None:intergenic |
| CCGAAATTGAGAAGTGGTTG+TGG | 0.496977 | 1_1:-8886931 | None:intergenic |
| CCTGTTAGCACTTCTTGTGG+TGG | 0.500953 | 1_1:+8887151 | Msa0006120:CDS |
| AAACAAATAGTCGAAATGAA+TGG | 0.501914 | 1_1:+8885653 | Msa0006120:CDS |
| TTTCTCTAAAATAAAATCTA+GGG | 0.514344 | 1_1:+8885331 | Msa0006120:CDS |
| ACTCAATCTCTTACCCAAGC+TGG | 0.526391 | 1_1:+8886238 | Msa0006120:CDS |
| ACGAATACTTGTATTCAAGA+AGG | 0.527596 | 1_1:+8885086 | Msa0006120:CDS |
| GATGATGGCAATGTGAGAAA+TGG | 0.530766 | 1_1:+8887406 | Msa0006120:three_prime_UTR |
| CCGGAATTGAGAAGTGGTTG+TGG | 0.532455 | 1_1:-8886900 | None:intergenic |
| CATCTAAAATGTGTCAAAGA+AGG | 0.534005 | 1_1:-8884885 | None:intergenic |
| GTTCACAGAATTCACCAAGT+TGG | 0.547239 | 1_1:-8885175 | None:intergenic |
| GAATGGTTTAAATGTTCTGA+CGG | 0.548208 | 1_1:+8885670 | Msa0006120:CDS |
| TGGAAAGCTAAATTTGTCGA+TGG | 0.550496 | 1_1:+8884966 | Msa0006120:CDS |
| CTTTAGAAGGAAAATTGGAA+AGG | 0.557457 | 1_1:+8887219 | Msa0006120:three_prime_UTR |
| AAAACAGCTTAATGACATAG+AGG | 0.561167 | 1_1:+8885463 | Msa0006120:CDS |
| AGCTTGGGTAAGAGATTGAG+TGG | 0.565364 | 1_1:-8886236 | None:intergenic |
| ATTAGACTCGTTATCACTTG+AGG | 0.568553 | 1_1:-8885582 | None:intergenic |
| GATTTGAACTGCATTCAAGA+AGG | 0.570098 | 1_1:+8886184 | Msa0006120:CDS |
| TTGTGGAGATATCGCCGGAA+TGG | 0.574238 | 1_1:-8886883 | None:intergenic |
| TTAACTGAGAAACACCAACT+TGG | 0.578750 | 1_1:+8885161 | Msa0006120:CDS |
| GTTGGTACTAGGATACCTGT+TGG | 0.584560 | 1_1:+8884825 | Msa0006120:intron |
| AATATTACTTGCCATAAATG+TGG | 0.597343 | 1_1:+8885404 | Msa0006120:CDS |
| ACAAGAAGTGCTAACAGGCA+AGG | 0.598197 | 1_1:-8887146 | None:intergenic |
| CTTTAAGAAATAGAAATGAT+GGG | 0.598723 | 1_1:+8885024 | Msa0006120:CDS |
| TTGCCTGTTAGCACTTCTTG+TGG | 0.599433 | 1_1:+8887148 | Msa0006120:CDS |
| TAATAACCGAAATTGAGAAG+TGG | 0.601547 | 1_1:-8886937 | None:intergenic |
| AGTCTATCTCTTCATTACAA+AGG | 0.603043 | 1_1:-8885625 | None:intergenic |
| CAAGAAGTGCTAACAGGCAA+GGG | 0.615876 | 1_1:-8887145 | None:intergenic |
| TCTCCCGTAATACAAGCTGT+GGG | 0.616221 | 1_1:+8884210 | Msa0006120:CDS |
| TCAAGCATGGATGCTTCTCA+AGG | 0.618339 | 1_1:+8887429 | Msa0006120:three_prime_UTR |
| ATGTGAGAAATGGTCAAGCA+TGG | 0.625638 | 1_1:+8887416 | Msa0006120:three_prime_UTR |
| AGTGGTTGTGGAGATATCGC+CGG | 0.632623 | 1_1:-8886888 | None:intergenic |
| AGTGGTTGTGGAGATATCAC+CGG | 0.632623 | 1_1:-8886919 | None:intergenic |
| CAATCTCTTACCCAAGCTGG+AGG | 0.647493 | 1_1:+8886241 | Msa0006120:CDS |
| CTGAAAAGAAATAAGGCGCG+AGG | 0.667510 | 1_1:-8887100 | None:intergenic |
| GATGACGTTTAAAGAAAGAA+CGG | 0.668596 | 1_1:-8886842 | None:intergenic |
| ATATCACCGGAATTGAGAAG+TGG | 0.671818 | 1_1:-8886906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr1_1:8884560-8884579 | Msa0006120:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr1_1:8884559-8884578 | Msa0006120:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr1_1:8884560-8884579 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr1_1:8884559-8884578 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr1_1:8884559-8884578 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr1_1:8884560-8884579 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr1_1:8884560-8884579 | Msa0006120:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr1_1:8884559-8884578 | Msa0006120:intron | 0.0% |
| !!! | TTAAGGTATTAAATTAAATT+GGG | - | chr1_1:8887009-8887028 | None:intergenic | 10.0% |
| !!! | ATTAAGGTATTAAATTAAAT+TGG | - | chr1_1:8887010-8887029 | None:intergenic | 10.0% |
| !!! | TTTAATTTAATACCTTAATT+TGG | + | chr1_1:8887011-8887030 | Msa0006120:intron | 10.0% |
| !! | TTAATTTAATACCTTAATTT+GGG | + | chr1_1:8887012-8887031 | Msa0006120:intron | 10.0% |
| !! | TGTTTAAAAAAATAAAACTT+AGG | + | chr1_1:8887192-8887211 | Msa0006120:exon | 10.0% |
| !!! | ATTTCTCTAAAATAAAATCT+AGG | + | chr1_1:8885330-8885349 | Msa0006120:CDS | 15.0% |
| !!! | TTTCTCTAAAATAAAATCTA+GGG | + | chr1_1:8885331-8885350 | Msa0006120:CDS | 15.0% |
| !! | TTAGAATTTCTTATTAAAGA+TGG | + | chr1_1:8885758-8885777 | Msa0006120:CDS | 15.0% |
| !! | ATTTGTATATACCACAAATT+TGG | - | chr1_1:8884296-8884315 | None:intergenic | 20.0% |
| !!! | ATATATATTTTGTTGGTACT+AGG | + | chr1_1:8884814-8884833 | Msa0006120:intron | 20.0% |
| !!! | TAAAGATTGCCTAATTTTTT+CGG | - | chr1_1:8885009-8885028 | None:intergenic | 20.0% |
| !!! | TCTTTAAGAAATAGAAATGA+TGG | + | chr1_1:8885023-8885042 | Msa0006120:CDS | 20.0% |
| !!! | CTTTAAGAAATAGAAATGAT+GGG | + | chr1_1:8885024-8885043 | Msa0006120:CDS | 20.0% |
| !! | TTATGTCATTACATAAAGAA+AGG | - | chr1_1:8885112-8885131 | None:intergenic | 20.0% |
| !!! | TATTAAAGATGGTTCTAATA+AGG | + | chr1_1:8885769-8885788 | Msa0006120:CDS | 20.0% |
| !! | AAGAGAAATTAATCTTCTTA+AGG | + | chr1_1:8885898-8885917 | Msa0006120:CDS | 20.0% |
| !! | AGAGAAATTAATCTTCTTAA+GGG | + | chr1_1:8885899-8885918 | Msa0006120:CDS | 20.0% |
| !!! | GGATTAGAATTTTCAATTTT+AGG | - | chr1_1:8886019-8886038 | None:intergenic | 20.0% |
| !! | TCTTAAAAATGAAATTGCTT+TGG | + | chr1_1:8886147-8886166 | Msa0006120:CDS | 20.0% |
| !!! | GTTTTGGAAAAATATTTTGT+AGG | - | chr1_1:8886217-8886236 | None:intergenic | 20.0% |
| !!! | CAAGAGATTTCATTTAAAAT+AGG | + | chr1_1:8887507-8887526 | Msa0006120:three_prime_UTR | 20.0% |
| ! | TAGACAATCAAGATGAAATT+TGG | + | chr1_1:8884171-8884190 | Msa0006120:CDS | 25.0% |
| ! | AGACAATCAAGATGAAATTT+GGG | + | chr1_1:8884172-8884191 | Msa0006120:CDS | 25.0% |
| ! | TAAGCTTATTGCATATATCT+AGG | + | chr1_1:8884407-8884426 | Msa0006120:intron | 25.0% |
| !! | CTAATTTTACCCTAATTCTT+CGG | - | chr1_1:8884491-8884510 | None:intergenic | 25.0% |
| ! | ATTAGGGTAAAATTAGGAAA+TGG | + | chr1_1:8884495-8884514 | Msa0006120:intron | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | - | chr1_1:8884648-8884667 | None:intergenic | 25.0% |
| ! | CATAAAAAGTCTTGATAGAA+AGG | - | chr1_1:8884922-8884941 | None:intergenic | 25.0% |
| !! | ATCTTTTTGCCGAAAAAATT+AGG | + | chr1_1:8884997-8885016 | Msa0006120:CDS | 25.0% |
| ! | AATTACCCAGAATTAACTTA+TGG | + | chr1_1:8885056-8885075 | Msa0006120:CDS | 25.0% |
| ! | TTTGACCATAAGTTAATTCT+GGG | - | chr1_1:8885064-8885083 | None:intergenic | 25.0% |
| ! | ATTTGACCATAAGTTAATTC+TGG | - | chr1_1:8885065-8885084 | None:intergenic | 25.0% |
| ! | AACATCATAAGTCTTCTAAT+AGG | + | chr1_1:8885291-8885310 | Msa0006120:CDS | 25.0% |
| !!! | TTCCTAGTTCTAAAAACAAA+AGG | + | chr1_1:8885360-8885379 | Msa0006120:CDS | 25.0% |
| !!! | TTCCTTTTGTTTTTAGAACT+AGG | - | chr1_1:8885365-8885384 | None:intergenic | 25.0% |
| ! | AATATTACTTGCCATAAATG+TGG | + | chr1_1:8885404-8885423 | Msa0006120:CDS | 25.0% |
| ! | AAACAAATAGTCGAAATGAA+TGG | + | chr1_1:8885653-8885672 | Msa0006120:CDS | 25.0% |
| ! | AACAGGTGTTTCTTTAATAT+TGG | - | chr1_1:8885861-8885880 | None:intergenic | 25.0% |
| ! | CTTAAATCATTAGTAGAAAC+AGG | - | chr1_1:8885878-8885897 | None:intergenic | 25.0% |
| !! | ATTAGAGACTTTAAAGATTG+AGG | + | chr1_1:8885976-8885995 | Msa0006120:CDS | 25.0% |
| !! | AGTATTTTCAGTCTTTTCAT+CGG | - | chr1_1:8886050-8886069 | None:intergenic | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr1_1:8886371-8886390 | None:intergenic | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr1_1:8886397-8886416 | Msa0006120:intron | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr1_1:8886403-8886422 | None:intergenic | 25.0% |
| ! | CTAAAAAACATCTTTCATGA+AGG | - | chr1_1:8886465-8886484 | None:intergenic | 25.0% |
| ! | GGAAAAGTTAGATCAAATTA+GGG | - | chr1_1:8886988-8887007 | None:intergenic | 25.0% |
| !!! | AACTACTTTTTGAATTCATG+TGG | + | chr1_1:8887357-8887376 | Msa0006120:intron | 25.0% |
| !! | TTTTGAATTCATGTGGATTT+AGG | + | chr1_1:8887364-8887383 | Msa0006120:intron | 25.0% |
| CGATTATTCGTTTCAATTTG+TGG | + | chr1_1:8884242-8884261 | Msa0006120:CDS | 30.0% | |
| ACACAAATCATAATTTGACG+TGG | + | chr1_1:8884379-8884398 | Msa0006120:intron | 30.0% | |
| CACAAATCATAATTTGACGT+GGG | + | chr1_1:8884380-8884399 | Msa0006120:intron | 30.0% | |
| !!! | TGATGTCATTTTTGCAAGTT+TGG | + | chr1_1:8884445-8884464 | Msa0006120:intron | 30.0% |
| CGAAGAATTAGGGTAAAATT+AGG | + | chr1_1:8884489-8884508 | Msa0006120:intron | 30.0% | |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr1_1:8884635-8884654 | Msa0006120:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr1_1:8884683-8884702 | Msa0006120:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | - | chr1_1:8884701-8884720 | None:intergenic | 30.0% |
| ! | CATCTAAAATGTGTCAAAGA+AGG | - | chr1_1:8884888-8884907 | None:intergenic | 30.0% |
| ! | CTTCTTTGACACATTTTAGA+TGG | + | chr1_1:8884886-8884905 | Msa0006120:CDS | 30.0% |
| AAAATCCTAATAGCAGTCAT+TGG | + | chr1_1:8884946-8884965 | Msa0006120:CDS | 30.0% | |
| !!! | ATTTTTTCGGCAAAAAGATG+AGG | - | chr1_1:8884996-8885015 | None:intergenic | 30.0% |
| ACGAATACTTGTATTCAAGA+AGG | + | chr1_1:8885086-8885105 | Msa0006120:CDS | 30.0% | |
| ! | TTTTTCTTTCTTTCAACAGC+CGG | - | chr1_1:8885224-8885243 | None:intergenic | 30.0% |
| AAAACAGCTTAATGACATAG+AGG | + | chr1_1:8885463-8885482 | Msa0006120:CDS | 30.0% | |
| AGTCTATCTCTTCATTACAA+AGG | - | chr1_1:8885628-8885647 | None:intergenic | 30.0% | |
| GTAATGAAGAGATAGACTAT+TGG | + | chr1_1:8885630-8885649 | Msa0006120:CDS | 30.0% | |
| GAATGGTTTAAATGTTCTGA+CGG | + | chr1_1:8885670-8885689 | Msa0006120:CDS | 30.0% | |
| !! | AGATGGTTCTAATAAGGAAA+AGG | + | chr1_1:8885775-8885794 | Msa0006120:CDS | 30.0% |
| !! | GATGGTTCTAATAAGGAAAA+GGG | + | chr1_1:8885776-8885795 | Msa0006120:CDS | 30.0% |
| ! | TAAGGTGTCTCAATAATTTG+AGG | - | chr1_1:8885803-8885822 | None:intergenic | 30.0% |
| !! | AAGACTTCACTGATTCTATA+AGG | - | chr1_1:8885821-8885840 | None:intergenic | 30.0% |
| AAAGATTGAGGAAATCATTC+AGG | + | chr1_1:8885988-8886007 | Msa0006120:CDS | 30.0% | |
| AAAGAGTTACGTCACAAAAA+TGG | + | chr1_1:8886086-8886105 | Msa0006120:CDS | 30.0% | |
| !! | CTCATAGAATAACTTGCTAA+AGG | + | chr1_1:8886436-8886455 | Msa0006120:intron | 30.0% |
| ! | AGAGGAGTTTTTAAATGAGA+GGG | + | chr1_1:8886659-8886678 | Msa0006120:intron | 30.0% |
| GATGACGTTTAAAGAAAGAA+CGG | - | chr1_1:8886845-8886864 | None:intergenic | 30.0% | |
| TAATAACCGAAATTGAGAAG+TGG | - | chr1_1:8886940-8886959 | None:intergenic | 30.0% | |
| TCTCAATTTCGGTTATTAAC+TGG | + | chr1_1:8886942-8886961 | Msa0006120:CDS | 30.0% | |
| GGGAAAAGTTAGATCAAATT+AGG | - | chr1_1:8886989-8887008 | None:intergenic | 30.0% | |
| CTGATACAAAACTAACAAAC+AGG | - | chr1_1:8887040-8887059 | None:intergenic | 30.0% | |
| AAACTGGCTGAAAAGAAATA+AGG | - | chr1_1:8887110-8887129 | None:intergenic | 30.0% | |
| ! | TATTTCTTTTCAGCCAGTTT+TGG | + | chr1_1:8887110-8887129 | Msa0006120:CDS | 30.0% |
| AAACTTAGGTTCACTTTAGA+AGG | + | chr1_1:8887206-8887225 | Msa0006120:three_prime_UTR | 30.0% | |
| ! | GTTCACTTTAGAAGGAAAAT+TGG | + | chr1_1:8887214-8887233 | Msa0006120:three_prime_UTR | 30.0% |
| ! | CTTTAGAAGGAAAATTGGAA+AGG | + | chr1_1:8887219-8887238 | Msa0006120:three_prime_UTR | 30.0% |
| !! | TTCCAGGTTTGATTTTTGTT+TGG | + | chr1_1:8887259-8887278 | Msa0006120:intron | 30.0% |
| !! | TCCAGGTTTGATTTTTGTTT+GGG | + | chr1_1:8887260-8887279 | Msa0006120:intron | 30.0% |
| !! | GATTTAGGTTCAATTTTCAG+TGG | + | chr1_1:8887379-8887398 | Msa0006120:intron | 30.0% |
| ! | ATTTTCAGTGGATAAGATGA+TGG | + | chr1_1:8887391-8887410 | Msa0006120:three_prime_UTR | 30.0% |
| GACAATCAAGTCCAAATTTG+TGG | + | chr1_1:8884282-8884301 | Msa0006120:CDS | 35.0% | |
| GAAAGTTACTGAAACTGATG+TGG | - | chr1_1:8884328-8884347 | None:intergenic | 35.0% | |
| CAATTGATCCGTTTATTGTC+AGG | + | chr1_1:8884347-8884366 | Msa0006120:intron | 35.0% | |
| ! | ATCCGTTTATTGTCAGGTTT+TGG | + | chr1_1:8884353-8884372 | Msa0006120:intron | 35.0% |
| ! | TCCGTTTATTGTCAGGTTTT+GGG | + | chr1_1:8884354-8884373 | Msa0006120:intron | 35.0% |
| ACCCAAAACCTGACAATAAA+CGG | - | chr1_1:8884358-8884377 | None:intergenic | 35.0% | |
| ! | TAATTCTTCGGCTTTTCTCA+CGG | - | chr1_1:8884479-8884498 | None:intergenic | 35.0% |
| TGAGAAAAGCCGAAGAATTA+GGG | + | chr1_1:8884479-8884498 | Msa0006120:intron | 35.0% | |
| TTGATAAAAGACACGACCAA+AGG | + | chr1_1:8884712-8884731 | Msa0006120:intron | 35.0% | |
| TGATAAAAGACACGACCAAA+GGG | + | chr1_1:8884713-8884732 | Msa0006120:intron | 35.0% | |
| ! | GACACATTTTAGATGGTACA+AGG | + | chr1_1:8884893-8884912 | Msa0006120:CDS | 35.0% |
| TGGAAAGCTAAATTTGTCGA+TGG | + | chr1_1:8884966-8884985 | Msa0006120:CDS | 35.0% | |
| TTAACTGAGAAACACCAACT+TGG | + | chr1_1:8885161-8885180 | Msa0006120:CDS | 35.0% | |
| !!! | TTTTTTAGTCCAGCATTGAG+TGG | - | chr1_1:8885447-8885466 | None:intergenic | 35.0% |
| ATTAGACTCGTTATCACTTG+AGG | - | chr1_1:8885585-8885604 | None:intergenic | 35.0% | |
| !! | GAAATTGCTTTGGTTGATAG+TGG | + | chr1_1:8886157-8886176 | Msa0006120:CDS | 35.0% |
| GATTTGAACTGCATTCAAGA+AGG | + | chr1_1:8886184-8886203 | Msa0006120:CDS | 35.0% | |
| TTGCTAAAAGACACCTTCAT+GGG | - | chr1_1:8886387-8886406 | None:intergenic | 35.0% | |
| ! | GAGAGGAGTTTTTAAATGAG+AGG | + | chr1_1:8886658-8886677 | Msa0006120:intron | 35.0% |
| ! | GAGTTTTTAAATGAGAGGGT+GGG | + | chr1_1:8886663-8886682 | Msa0006120:intron | 35.0% |
| ! | TCATCGTTTTACTCCGAAAA+CGG | + | chr1_1:8886860-8886879 | Msa0006120:CDS | 35.0% |
| !! | CTGTTGTTTCTTCTGTTGTT+GGG | + | chr1_1:8887068-8887087 | Msa0006120:CDS | 35.0% |
| !! | ACTTTGGTTATACTGATTCC+AGG | + | chr1_1:8887243-8887262 | Msa0006120:three_prime_UTR | 35.0% |
| ACCCAAACAAAAATCAAACC+TGG | - | chr1_1:8887264-8887283 | None:intergenic | 35.0% | |
| TTTGTTTGGGTGAATCACTT+AGG | + | chr1_1:8887273-8887292 | Msa0006120:intron | 35.0% | |
| ACAACCCACAGCTTGTATTA+CGG | - | chr1_1:8884217-8884236 | None:intergenic | 40.0% | |
| ! | AATTCTTCGGCTTTTCTCAC+GGG | - | chr1_1:8884478-8884497 | None:intergenic | 40.0% |
| GTGAGAAAAGCCGAAGAATT+AGG | + | chr1_1:8884478-8884497 | Msa0006120:intron | 40.0% | |
| TTATGTTACAAGCCACCCTT+TGG | - | chr1_1:8884731-8884750 | None:intergenic | 40.0% | |
| GCTTTCCAATGACTGCTATT+AGG | - | chr1_1:8884954-8884973 | None:intergenic | 40.0% | |
| GTTCACAGAATTCACCAAGT+TGG | - | chr1_1:8885178-8885197 | None:intergenic | 40.0% | |
| GAACAATTTGCCTTCGACTT+AGG | + | chr1_1:8885194-8885213 | Msa0006120:CDS | 40.0% | |
| TGCCATAAATGTGGCAAAAC+TGG | + | chr1_1:8885413-8885432 | Msa0006120:CDS | 40.0% | |
| ! | GACCAGTTTTGCCACATTTA+TGG | - | chr1_1:8885418-8885437 | None:intergenic | 40.0% |
| ! | GTCTTTTCATCGGAAGTAGA+AGG | - | chr1_1:8886040-8886059 | None:intergenic | 40.0% |
| ! | GGTAAGAGATTGAGTGGTTT+TGG | - | chr1_1:8886233-8886252 | None:intergenic | 40.0% |
| AAGTTTATCTCCTCCAGCTT+GGG | - | chr1_1:8886254-8886273 | None:intergenic | 40.0% | |
| CTTGCTAAAAGACACCTTCA+TGG | - | chr1_1:8886327-8886346 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAGCCACATCTCA+AGG | + | chr1_1:8886337-8886356 | Msa0006120:intron | 40.0% |
| TAGGGGATGTTTCAAATGAG+AGG | + | chr1_1:8886641-8886660 | Msa0006120:intron | 40.0% | |
| ! | GGAGTTTTTAAATGAGAGGG+TGG | + | chr1_1:8886662-8886681 | Msa0006120:intron | 40.0% |
| ! | TTTTTAAATGAGAGGGTGGG+AGG | + | chr1_1:8886666-8886685 | Msa0006120:intron | 40.0% |
| !! | TGGCCATTGGATTAGTTAGA+TGG | + | chr1_1:8886698-8886717 | Msa0006120:intron | 40.0% |
| CAGCCATCTAACTAATCCAA+TGG | - | chr1_1:8886704-8886723 | None:intergenic | 40.0% | |
| GATGGCTGTGATTAAAAGAG+AGG | + | chr1_1:8886716-8886735 | Msa0006120:intron | 40.0% | |
| ATATCACCGGAATTGAGAAG+TGG | - | chr1_1:8886909-8886928 | None:intergenic | 40.0% | |
| CCACAACCACTTCTCAATTT+CGG | + | chr1_1:8886931-8886950 | Msa0006120:CDS | 40.0% | |
| ACAAACAGGTGCCCAAATTA+AGG | - | chr1_1:8887026-8887045 | None:intergenic | 40.0% | |
| !! | GCTGTTGTTTCTTCTGTTGT+TGG | + | chr1_1:8887067-8887086 | Msa0006120:intron | 40.0% |
| ! | TTGTTTCTTCTGTTGTTGGG+TGG | + | chr1_1:8887071-8887090 | Msa0006120:CDS | 40.0% |
| TGTTTCTTCTGTTGTTGGGT+GGG | + | chr1_1:8887072-8887091 | Msa0006120:CDS | 40.0% | |
| GTACAAACAGAAGCCAAAAC+TGG | - | chr1_1:8887126-8887145 | None:intergenic | 40.0% | |
| !! | GGAAAATTGGAAAGGCACTT+TGG | + | chr1_1:8887227-8887246 | Msa0006120:three_prime_UTR | 40.0% |
| ! | GATGATGGCAATGTGAGAAA+TGG | + | chr1_1:8887406-8887425 | Msa0006120:three_prime_UTR | 40.0% |
| ATGTGAGAAATGGTCAAGCA+TGG | + | chr1_1:8887416-8887435 | Msa0006120:three_prime_UTR | 40.0% | |
| TTCTCCCGTAATACAAGCTG+TGG | + | chr1_1:8884209-8884228 | Msa0006120:CDS | 45.0% | |
| TCTCCCGTAATACAAGCTGT+GGG | + | chr1_1:8884210-8884229 | Msa0006120:CDS | 45.0% | |
| CAACCCACAGCTTGTATTAC+GGG | - | chr1_1:8884216-8884235 | None:intergenic | 45.0% | |
| TAAAAGACACGACCAAAGGG+TGG | + | chr1_1:8884716-8884735 | Msa0006120:intron | 45.0% | |
| GTTGGTACTAGGATACCTGT+TGG | + | chr1_1:8884825-8884844 | Msa0006120:intron | 45.0% | |
| TGCCTTCGACTTAGGAAAAC+CGG | + | chr1_1:8885202-8885221 | Msa0006120:CDS | 45.0% | |
| GTCATTATGCCACTCAATGC+TGG | + | chr1_1:8885435-8885454 | Msa0006120:CDS | 45.0% | |
| AGCTTGGGTAAGAGATTGAG+TGG | - | chr1_1:8886239-8886258 | None:intergenic | 45.0% | |
| ACTCAATCTCTTACCCAAGC+TGG | + | chr1_1:8886238-8886257 | Msa0006120:CDS | 45.0% | |
| GAAGTTTATCTCCTCCAGCT+TGG | - | chr1_1:8886255-8886274 | None:intergenic | 45.0% | |
| CTAAAAGACACCTTCATGGG+TGG | - | chr1_1:8886323-8886342 | None:intergenic | 45.0% | |
| GGAAATCACACCTTGAGATG+TGG | - | chr1_1:8886350-8886369 | None:intergenic | 45.0% | |
| GTGTGAGAAGAGAGAAAGCA+AGG | - | chr1_1:8886784-8886803 | None:intergenic | 45.0% | |
| ! | GGTGCTGAAACGATGAACAA+AGG | - | chr1_1:8886824-8886843 | None:intergenic | 45.0% |
| CCACAACCACTTCTCAATTC+CGG | + | chr1_1:8886900-8886919 | Msa0006120:CDS | 45.0% | |
| AGTGGTTGTGGAGATATCAC+CGG | - | chr1_1:8886922-8886941 | None:intergenic | 45.0% | |
| CCGAAATTGAGAAGTGGTTG+TGG | - | chr1_1:8886934-8886953 | None:intergenic | 45.0% | |
| CTGAAAAGAAATAAGGCGCG+AGG | - | chr1_1:8887103-8887122 | None:intergenic | 45.0% | |
| !! | CAAGAAGTGCTAACAGGCAA+GGG | - | chr1_1:8887148-8887167 | None:intergenic | 45.0% |
| !! | ACAAGAAGTGCTAACAGGCA+AGG | - | chr1_1:8887149-8887168 | None:intergenic | 45.0% |
| TTGCCTGTTAGCACTTCTTG+TGG | + | chr1_1:8887148-8887167 | Msa0006120:CDS | 45.0% | |
| CTGTTAGCACTTCTTGTGGT+GGG | + | chr1_1:8887152-8887171 | Msa0006120:CDS | 45.0% | |
| TCAAGCATGGATGCTTCTCA+AGG | + | chr1_1:8887429-8887448 | Msa0006120:three_prime_UTR | 45.0% | |
| !!! | TATATATATATATATTTTGT+TGG | + | chr1_1:8884807-8884826 | Msa0006120:intron | 5.0% |
| !! | ATAAACTTTATATATATATA+TGG | + | chr1_1:8886284-8886303 | Msa0006120:intron | 5.0% |
| !! | TAAACTTTATATATATATAT+GGG | + | chr1_1:8886285-8886304 | Msa0006120:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | + | chr1_1:8884608-8884627 | Msa0006120:intron | 5.0% |
| !! | AGCCGGTTTTCCTAAGTCGA+AGG | - | chr1_1:8885207-8885226 | None:intergenic | 50.0% |
| CAATCTCTTACCCAAGCTGG+AGG | + | chr1_1:8886241-8886260 | Msa0006120:CDS | 50.0% | |
| TTGCTAGAAGCCACCCATGA+AGG | + | chr1_1:8886310-8886329 | Msa0006120:intron | 50.0% | |
| GAGGATGAAACAGTGGCCAT+TGG | + | chr1_1:8886685-8886704 | Msa0006120:intron | 50.0% | |
| CGTGAAAAGGGTGAGAAGAG+AGG | - | chr1_1:8886759-8886778 | None:intergenic | 50.0% | |
| GAAAGCAAGGCGCGTGAAAA+GGG | - | chr1_1:8886771-8886790 | None:intergenic | 50.0% | |
| AGAAAGCAAGGCGCGTGAAA+AGG | - | chr1_1:8886772-8886791 | None:intergenic | 50.0% | |
| TACTCCGAAAACGGCCATTC+CGG | + | chr1_1:8886869-8886888 | Msa0006120:CDS | 50.0% | |
| TTGTGGAGATATCGCCGGAA+TGG | - | chr1_1:8886886-8886905 | None:intergenic | 50.0% | |
| AGTGGTTGTGGAGATATCGC+CGG | - | chr1_1:8886891-8886910 | None:intergenic | 50.0% | |
| CCGGAATTGAGAAGTGGTTG+TGG | - | chr1_1:8886903-8886922 | None:intergenic | 50.0% | |
| TTCTTCTGTTGTTGGGTGGG+TGG | + | chr1_1:8887075-8887094 | Msa0006120:CDS | 50.0% | |
| !! | CCACCACAAGAAGTGCTAAC+AGG | - | chr1_1:8887154-8887173 | None:intergenic | 50.0% |
| CCTGTTAGCACTTCTTGTGG+TGG | + | chr1_1:8887151-8887170 | Msa0006120:CDS | 50.0% | |
| GTGCAGATACGCTCTCCAAC+AGG | - | chr1_1:8884843-8884862 | None:intergenic | 55.0% | |
| AGGGTGGGAGGATGAAACAG+TGG | + | chr1_1:8886678-8886697 | Msa0006120:intron | 55.0% | |
| !! | ATCGCCGGAATGGCCGTTTT+CGG | - | chr1_1:8886876-8886895 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8884164 | 8887693 | 8884164 | ID=Msa0006120;Name=Msa0006120 |
| chr1_1 | mRNA | 8884164 | 8887693 | 8884164 | ID=Msa0006120-mRNA-1;Parent=Msa0006120;Name=Msa0006120-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0.5|0.4|0.6|0.75|0.6|5|374|611 |
| chr1_1 | exon | 8884164 | 8884303 | 8884164 | ID=Msa0006120-mRNA-1:exon:3130;Parent=Msa0006120-mRNA-1 |
| chr1_1 | exon | 8884836 | 8886276 | 8884836 | ID=Msa0006120-mRNA-1:exon:3131;Parent=Msa0006120-mRNA-1 |
| chr1_1 | exon | 8886840 | 8886963 | 8886840 | ID=Msa0006120-mRNA-1:exon:3132;Parent=Msa0006120-mRNA-1 |
| chr1_1 | exon | 8887068 | 8887264 | 8887068 | ID=Msa0006120-mRNA-1:exon:3133;Parent=Msa0006120-mRNA-1 |
| chr1_1 | exon | 8887386 | 8887693 | 8887386 | ID=Msa0006120-mRNA-1:exon:3134;Parent=Msa0006120-mRNA-1 |
| chr1_1 | CDS | 8884164 | 8884303 | 8884164 | ID=Msa0006120-mRNA-1:cds;Parent=Msa0006120-mRNA-1 |
| chr1_1 | CDS | 8884836 | 8886276 | 8884836 | ID=Msa0006120-mRNA-1:cds;Parent=Msa0006120-mRNA-1 |
| chr1_1 | CDS | 8886840 | 8886963 | 8886840 | ID=Msa0006120-mRNA-1:cds;Parent=Msa0006120-mRNA-1 |
| chr1_1 | CDS | 8887068 | 8887198 | 8887068 | ID=Msa0006120-mRNA-1:cds;Parent=Msa0006120-mRNA-1 |
| chr1_1 | three_prime_UTR | 8887199 | 8887264 | 8887199 | ID=Msa0006120-mRNA-1:three_prime_utr;Parent=Msa0006120-mRNA-1 |
| chr1_1 | three_prime_UTR | 8887386 | 8887693 | 8887386 | ID=Msa0006120-mRNA-1:three_prime_utr;Parent=Msa0006120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
