Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009320 | sp|P93604|LRK10_WHEAT | 31.707 | 82 | 56 | 0 | 169 | 250 | 277 | 358 | 2.70e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009320 | Msa0009390 | 0.808535 | 2.952781e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009320 | MtrunA17_Chr1g0157871 | 84.825 | 257 | 9 | 2 | 25 | 251 | 25 | 281 | 2.10e-152 | 436 |
| Msa0009320 | MtrunA17_Chr1g0157941 | 64.469 | 273 | 57 | 5 | 13 | 251 | 13 | 279 | 4.35e-114 | 338 |
| Msa0009320 | MtrunA17_Chr1g0157891 | 76.442 | 208 | 19 | 2 | 13 | 190 | 56 | 263 | 5.25e-107 | 310 |
| Msa0009320 | MtrunA17_Chr1g0158711 | 47.170 | 265 | 98 | 9 | 24 | 251 | 22 | 281 | 7.25e-70 | 224 |
| Msa0009320 | MtrunA17_Chr1g0158391 | 45.804 | 286 | 111 | 10 | 1 | 251 | 1 | 277 | 8.25e-69 | 221 |
| Msa0009320 | MtrunA17_Chr3g0088341 | 42.671 | 307 | 102 | 10 | 10 | 251 | 1 | 298 | 1.81e-67 | 218 |
| Msa0009320 | MtrunA17_Chr1g0158361 | 40.476 | 294 | 105 | 7 | 19 | 248 | 22 | 309 | 2.32e-67 | 211 |
| Msa0009320 | MtrunA17_Chr1g0158471 | 41.472 | 299 | 112 | 8 | 7 | 251 | 9 | 298 | 2.34e-64 | 210 |
| Msa0009320 | MtrunA17_Chr6g0467681 | 43.986 | 291 | 103 | 9 | 5 | 251 | 10 | 284 | 1.10e-63 | 208 |
| Msa0009320 | MtrunA17_Chr1g0158511 | 40.404 | 297 | 118 | 6 | 7 | 251 | 9 | 298 | 1.51e-63 | 208 |
| Msa0009320 | MtrunA17_Chr6g0467661 | 43.643 | 291 | 104 | 9 | 5 | 251 | 10 | 284 | 1.55e-62 | 205 |
| Msa0009320 | MtrunA17_Chr1g0158181 | 39.308 | 318 | 123 | 8 | 4 | 251 | 29 | 346 | 8.88e-60 | 199 |
| Msa0009320 | MtrunA17_Chr1g0158051 | 40.741 | 270 | 106 | 6 | 31 | 251 | 60 | 324 | 4.93e-53 | 181 |
| Msa0009320 | MtrunA17_Chr1g0157801 | 39.777 | 269 | 106 | 8 | 31 | 251 | 58 | 318 | 2.94e-50 | 173 |
| Msa0009320 | MtrunA17_Chr1g0157971 | 37.063 | 286 | 135 | 5 | 9 | 251 | 39 | 322 | 1.90e-49 | 171 |
| Msa0009320 | MtrunA17_Chr1g0158101 | 38.235 | 272 | 113 | 5 | 31 | 251 | 61 | 328 | 3.90e-49 | 170 |
| Msa0009320 | MtrunA17_Chr1g0157781 | 38.235 | 272 | 109 | 8 | 31 | 251 | 60 | 323 | 1.59e-48 | 169 |
| Msa0009320 | MtrunA17_Chr6g0467641 | 40.000 | 265 | 80 | 9 | 5 | 251 | 10 | 213 | 2.68e-45 | 158 |
| Msa0009320 | MtrunA17_Chr1g0158531 | 32.982 | 285 | 117 | 6 | 21 | 251 | 46 | 310 | 1.84e-40 | 146 |
| Msa0009320 | MtrunA17_Chr1g0158651 | 35.145 | 276 | 96 | 8 | 31 | 251 | 80 | 327 | 2.88e-40 | 146 |
| Msa0009320 | MtrunA17_Chr1g0158311 | 34.109 | 258 | 128 | 6 | 31 | 251 | 56 | 308 | 8.96e-37 | 136 |
| Msa0009320 | MtrunA17_Chr1g0160771 | 33.571 | 280 | 132 | 8 | 17 | 251 | 51 | 321 | 1.56e-31 | 122 |
| Msa0009320 | MtrunA17_Chr1g0160581 | 31.741 | 293 | 134 | 9 | 17 | 251 | 41 | 325 | 1.91e-28 | 113 |
| Msa0009320 | MtrunA17_Chr1g0160731 | 32.463 | 268 | 127 | 8 | 31 | 251 | 57 | 317 | 1.59e-27 | 110 |
| Msa0009320 | MtrunA17_Chr1g0158771 | 31.439 | 264 | 120 | 9 | 31 | 251 | 64 | 309 | 4.83e-27 | 108 |
| Msa0009320 | MtrunA17_Chr1g0158611 | 59.155 | 71 | 29 | 0 | 181 | 251 | 1 | 71 | 3.61e-24 | 99.4 |
| Msa0009320 | MtrunA17_Chr6g0467701 | 81.132 | 53 | 10 | 0 | 199 | 251 | 2 | 54 | 7.94e-24 | 98.2 |
| Msa0009320 | MtrunA17_Chr1g0158321 | 77.358 | 53 | 12 | 0 | 199 | 251 | 2 | 54 | 5.77e-22 | 93.2 |
| Msa0009320 | MtrunA17_Chr4g0037001 | 28.623 | 276 | 129 | 10 | 31 | 251 | 66 | 328 | 5.64e-20 | 88.6 |
| Msa0009320 | MtrunA17_Chr1g0160681 | 45.679 | 81 | 44 | 0 | 171 | 251 | 5 | 85 | 1.07e-16 | 78.6 |
| Msa0009320 | MtrunA17_Chr6g0483791 | 38.043 | 92 | 54 | 1 | 162 | 250 | 298 | 389 | 1.44e-11 | 63.9 |
| Msa0009320 | MtrunA17_Chr1g0209481 | 27.419 | 124 | 76 | 2 | 141 | 250 | 104 | 227 | 1.80e-11 | 63.5 |
| Msa0009320 | MtrunA17_Chr8g0391231 | 39.000 | 100 | 50 | 3 | 160 | 250 | 257 | 354 | 2.96e-11 | 63.2 |
| Msa0009320 | MtrunA17_Chr6g0483981 | 38.843 | 121 | 59 | 6 | 136 | 250 | 176 | 287 | 3.26e-11 | 62.8 |
| Msa0009320 | MtrunA17_Chr7g0250741 | 48.980 | 49 | 25 | 0 | 202 | 250 | 505 | 553 | 5.00e-11 | 62.4 |
| Msa0009320 | MtrunA17_Chr1g0209511 | 34.066 | 91 | 59 | 1 | 160 | 250 | 247 | 336 | 5.53e-11 | 62.4 |
| Msa0009320 | MtrunA17_Chr7g0232441 | 28.448 | 116 | 72 | 2 | 141 | 251 | 234 | 343 | 7.17e-11 | 62.0 |
| Msa0009320 | MtrunA17_Chr1g0209501 | 33.735 | 83 | 52 | 1 | 168 | 250 | 249 | 328 | 8.79e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGTTACTAAAATAA+TGG | 0.242903 | 1_1:-13599314 | None:intergenic |
| CTTGTACACCAGGGTTTCTT+TGG | 0.252727 | 1_1:-13599072 | None:intergenic |
| AAAGAAAGTAATGTTGTTGT+AGG | 0.292213 | 1_1:-13599008 | None:intergenic |
| TACCGAAAGTGTCGTCGAAT+TGG | 0.342357 | 1_1:+13599129 | Msa0009320:CDS |
| GCTCATGGAGCTGTCTATAA+AGG | 0.364308 | 1_1:+13599629 | Msa0009320:CDS |
| CTATCAGTAAACCTTGTAAA+TGG | 0.377203 | 1_1:+13598758 | Msa0009320:CDS |
| GTCCAATTCGACGACACTTT+CGG | 0.388660 | 1_1:-13599131 | None:intergenic |
| TTCTTTAATTGCTCTTCAGT+TGG | 0.394658 | 1_1:+13599025 | Msa0009320:CDS |
| TGAACTGATCTGTAATTCTC+TGG | 0.429384 | 1_1:-13599586 | None:intergenic |
| GTAGAATCAGTAGCATAAAT+CGG | 0.460350 | 1_1:-13599109 | None:intergenic |
| TGCAATCTATGTCACTGATA+AGG | 0.468171 | 1_1:-13598886 | None:intergenic |
| GAGTACACCATCTGAAAAGC+TGG | 0.470583 | 1_1:+13599047 | Msa0009320:CDS |
| TATTGTTCTGACCATTTACA+AGG | 0.484691 | 1_1:-13598769 | None:intergenic |
| TCTGCATAAGAAAATCTAGT+TGG | 0.512760 | 1_1:-13599560 | None:intergenic |
| CTTGAACAAGATAAACGAAA+GGG | 0.516549 | 1_1:-13598812 | None:intergenic |
| AATTGTTGGTTCAACTATGC+TGG | 0.534142 | 1_1:+13599433 | Msa0009320:CDS |
| GAATTTGCAGGAGCAATTGT+TGG | 0.534993 | 1_1:+13599419 | Msa0009320:intron |
| GACAACATGTCTTGTACACC+AGG | 0.539662 | 1_1:-13599082 | None:intergenic |
| AAGCTTGGCGAAGGAGCTCA+TGG | 0.549645 | 1_1:+13599614 | Msa0009320:CDS |
| GATCAGTTCAAAGAAAAGCT+TGG | 0.563244 | 1_1:+13599599 | Msa0009320:CDS |
| TTCAAAGAAAAGCTTGGCGA+AGG | 0.585302 | 1_1:+13599605 | Msa0009320:CDS |
| AGCTGGGACCAAAGAAACCC+TGG | 0.590213 | 1_1:+13599064 | Msa0009320:CDS |
| ATAACGCGCTCAGCTTGAGT+TGG | 0.600095 | 1_1:+13599218 | Msa0009320:CDS |
| TAAACGAAAGGGGCATTCAA+CGG | 0.614443 | 1_1:-13598801 | None:intergenic |
| TCATATTCTAAACATTGACT+AGG | 0.617991 | 1_1:-13599256 | None:intergenic |
| ACTTGAACAAGATAAACGAA+AGG | 0.637824 | 1_1:-13598813 | None:intergenic |
| AGTACACCATCTGAAAAGCT+GGG | 0.647717 | 1_1:+13599048 | Msa0009320:CDS |
| TTGAACAAGATAAACGAAAG+GGG | 0.665988 | 1_1:-13598811 | None:intergenic |
| ACAACATGTCTTGTACACCA+GGG | 0.715947 | 1_1:-13599081 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGGAAATAATAATATA+TGG | - | chr1_1:13599381-13599400 | None:intergenic | 10.0% |
| !! | AAAAAGGAAATAATAATATA+TGG | - | chr1_1:13599381-13599400 | None:intergenic | 10.0% |
| !!! | ATAAGGAATTTTTTTGATAC+AGG | - | chr1_1:13598872-13598891 | None:intergenic | 20.0% |
| !! | TAACAGCAAGTTATTATATA+AGG | + | chr1_1:13599194-13599213 | Msa0009320:intron | 20.0% |
| !!! | ATAAGGAATTTTTTTGATAC+AGG | - | chr1_1:13598872-13598891 | None:intergenic | 20.0% |
| !! | TAACAGCAAGTTATTATATA+AGG | + | chr1_1:13599194-13599213 | Msa0009320:intron | 20.0% |
| !!! | TTTTTTGATACAGGTTTTGA+GGG | - | chr1_1:13598863-13598882 | None:intergenic | 25.0% |
| !!! | TTTTTTTGATACAGGTTTTG+AGG | - | chr1_1:13598864-13598883 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAAAAGACACT+AGG | - | chr1_1:13598953-13598972 | None:intergenic | 25.0% |
| ! | AAAGAAAGTAATGTTGTTGT+AGG | - | chr1_1:13599011-13599030 | None:intergenic | 25.0% |
| !!! | ATATAATAACTTGCTGTTAC+TGG | - | chr1_1:13599193-13599212 | None:intergenic | 25.0% |
| !! | TCATATTCTAAACATTGACT+AGG | - | chr1_1:13599259-13599278 | None:intergenic | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_1:13599313-13599332 | Msa0009320:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_1:13599317-13599336 | None:intergenic | 25.0% |
| ! | CACTTAATGAAAGGAAAAAA+AGG | - | chr1_1:13599397-13599416 | None:intergenic | 25.0% |
| ! | CAAATTCAACACTTAATGAA+AGG | - | chr1_1:13599406-13599425 | None:intergenic | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_1:13599520-13599539 | Msa0009320:CDS | 25.0% |
| !!! | TTTTTTGATACAGGTTTTGA+GGG | - | chr1_1:13598863-13598882 | None:intergenic | 25.0% |
| !!! | TTTTTTTGATACAGGTTTTG+AGG | - | chr1_1:13598864-13598883 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAAAAGACACT+AGG | - | chr1_1:13598953-13598972 | None:intergenic | 25.0% |
| ! | AAAGAAAGTAATGTTGTTGT+AGG | - | chr1_1:13599011-13599030 | None:intergenic | 25.0% |
| !!! | ATATAATAACTTGCTGTTAC+TGG | - | chr1_1:13599193-13599212 | None:intergenic | 25.0% |
| !! | TCATATTCTAAACATTGACT+AGG | - | chr1_1:13599259-13599278 | None:intergenic | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_1:13599313-13599332 | Msa0009320:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_1:13599317-13599336 | None:intergenic | 25.0% |
| ! | CACTTAATGAAAGGAAAAAA+AGG | - | chr1_1:13599397-13599416 | None:intergenic | 25.0% |
| ! | CAAATTCAACACTTAATGAA+AGG | - | chr1_1:13599406-13599425 | None:intergenic | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_1:13599520-13599539 | Msa0009320:CDS | 25.0% |
| CTATCAGTAAACCTTGTAAA+TGG | + | chr1_1:13598758-13598777 | Msa0009320:CDS | 30.0% | |
| TATTGTTCTGACCATTTACA+AGG | - | chr1_1:13598772-13598791 | None:intergenic | 30.0% | |
| TTGAACAAGATAAACGAAAG+GGG | - | chr1_1:13598814-13598833 | None:intergenic | 30.0% | |
| CTTGAACAAGATAAACGAAA+GGG | - | chr1_1:13598815-13598834 | None:intergenic | 30.0% | |
| ACTTGAACAAGATAAACGAA+AGG | - | chr1_1:13598816-13598835 | None:intergenic | 30.0% | |
| TAGGAAAAATCTGATCGAAA+AGG | - | chr1_1:13598992-13599011 | None:intergenic | 30.0% | |
| TTCTTTAATTGCTCTTCAGT+TGG | + | chr1_1:13599025-13599044 | Msa0009320:CDS | 30.0% | |
| GTAGAATCAGTAGCATAAAT+CGG | - | chr1_1:13599112-13599131 | None:intergenic | 30.0% | |
| TGGAATAGAAATAGAACTGA+AGG | - | chr1_1:13599361-13599380 | None:intergenic | 30.0% | |
| !! | TCATTAAGTGTTGAATTTGC+AGG | + | chr1_1:13599407-13599426 | Msa0009320:intron | 30.0% |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_1:13599563-13599582 | None:intergenic | 30.0% | |
| CTATCAGTAAACCTTGTAAA+TGG | + | chr1_1:13598758-13598777 | Msa0009320:CDS | 30.0% | |
| TATTGTTCTGACCATTTACA+AGG | - | chr1_1:13598772-13598791 | None:intergenic | 30.0% | |
| TTGAACAAGATAAACGAAAG+GGG | - | chr1_1:13598814-13598833 | None:intergenic | 30.0% | |
| CTTGAACAAGATAAACGAAA+GGG | - | chr1_1:13598815-13598834 | None:intergenic | 30.0% | |
| ACTTGAACAAGATAAACGAA+AGG | - | chr1_1:13598816-13598835 | None:intergenic | 30.0% | |
| TAGGAAAAATCTGATCGAAA+AGG | - | chr1_1:13598992-13599011 | None:intergenic | 30.0% | |
| TTCTTTAATTGCTCTTCAGT+TGG | + | chr1_1:13599025-13599044 | Msa0009320:CDS | 30.0% | |
| GTAGAATCAGTAGCATAAAT+CGG | - | chr1_1:13599112-13599131 | None:intergenic | 30.0% | |
| TGGAATAGAAATAGAACTGA+AGG | - | chr1_1:13599361-13599380 | None:intergenic | 30.0% | |
| !! | TCATTAAGTGTTGAATTTGC+AGG | + | chr1_1:13599407-13599426 | Msa0009320:intron | 30.0% |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_1:13599563-13599582 | None:intergenic | 30.0% | |
| TGCAATCTATGTCACTGATA+AGG | - | chr1_1:13598889-13598908 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_1:13599433-13599452 | Msa0009320:CDS | 35.0% |
| !!! | ACTATGCTGGTTGTTTTGAT+TGG | + | chr1_1:13599446-13599465 | Msa0009320:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_1:13599477-13599496 | Msa0009320:CDS | 35.0% |
| TGAACTGATCTGTAATTCTC+TGG | - | chr1_1:13599589-13599608 | None:intergenic | 35.0% | |
| GATCAGTTCAAAGAAAAGCT+TGG | + | chr1_1:13599599-13599618 | Msa0009320:CDS | 35.0% | |
| TGCAATCTATGTCACTGATA+AGG | - | chr1_1:13598889-13598908 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_1:13599433-13599452 | Msa0009320:CDS | 35.0% |
| !!! | ACTATGCTGGTTGTTTTGAT+TGG | + | chr1_1:13599446-13599465 | Msa0009320:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_1:13599477-13599496 | Msa0009320:CDS | 35.0% |
| TGAACTGATCTGTAATTCTC+TGG | - | chr1_1:13599589-13599608 | None:intergenic | 35.0% | |
| GATCAGTTCAAAGAAAAGCT+TGG | + | chr1_1:13599599-13599618 | Msa0009320:CDS | 35.0% | |
| !! | TAAACGAAAGGGGCATTCAA+CGG | - | chr1_1:13598804-13598823 | None:intergenic | 40.0% |
| !! | CACTAGGAAGACAGTTTTGT+GGG | - | chr1_1:13598937-13598956 | None:intergenic | 40.0% |
| ! | ACACTAGGAAGACAGTTTTG+TGG | - | chr1_1:13598938-13598957 | None:intergenic | 40.0% |
| AGTACACCATCTGAAAAGCT+GGG | + | chr1_1:13599048-13599067 | Msa0009320:CDS | 40.0% | |
| ACAACATGTCTTGTACACCA+GGG | - | chr1_1:13599084-13599103 | None:intergenic | 40.0% | |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_1:13599419-13599438 | Msa0009320:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_1:13599484-13599503 | Msa0009320:CDS | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_1:13599485-13599504 | Msa0009320:CDS | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_1:13599605-13599624 | Msa0009320:CDS | 40.0% | |
| !! | TAAACGAAAGGGGCATTCAA+CGG | - | chr1_1:13598804-13598823 | None:intergenic | 40.0% |
| !! | CACTAGGAAGACAGTTTTGT+GGG | - | chr1_1:13598937-13598956 | None:intergenic | 40.0% |
| ! | ACACTAGGAAGACAGTTTTG+TGG | - | chr1_1:13598938-13598957 | None:intergenic | 40.0% |
| AGTACACCATCTGAAAAGCT+GGG | + | chr1_1:13599048-13599067 | Msa0009320:CDS | 40.0% | |
| ACAACATGTCTTGTACACCA+GGG | - | chr1_1:13599084-13599103 | None:intergenic | 40.0% | |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_1:13599419-13599438 | Msa0009320:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_1:13599484-13599503 | Msa0009320:CDS | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_1:13599485-13599504 | Msa0009320:CDS | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_1:13599605-13599624 | Msa0009320:CDS | 40.0% | |
| !!! | CAGGTTTTGAGGGAAACTCA+AGG | - | chr1_1:13598853-13598872 | None:intergenic | 45.0% |
| !! | GACAGTTTTGTGGGTCAGAT+AGG | - | chr1_1:13598928-13598947 | None:intergenic | 45.0% |
| GAGTACACCATCTGAAAAGC+TGG | + | chr1_1:13599047-13599066 | Msa0009320:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_1:13599057-13599076 | None:intergenic | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_1:13599075-13599094 | None:intergenic | 45.0% | |
| GACAACATGTCTTGTACACC+AGG | - | chr1_1:13599085-13599104 | None:intergenic | 45.0% | |
| !! | TACCGAAAGTGTCGTCGAAT+TGG | + | chr1_1:13599129-13599148 | Msa0009320:CDS | 45.0% |
| GTCCAATTCGACGACACTTT+CGG | - | chr1_1:13599134-13599153 | None:intergenic | 45.0% | |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_1:13599486-13599505 | Msa0009320:CDS | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_1:13599629-13599648 | Msa0009320:CDS | 45.0% | |
| !!! | CAGGTTTTGAGGGAAACTCA+AGG | - | chr1_1:13598853-13598872 | None:intergenic | 45.0% |
| !! | GACAGTTTTGTGGGTCAGAT+AGG | - | chr1_1:13598928-13598947 | None:intergenic | 45.0% |
| GAGTACACCATCTGAAAAGC+TGG | + | chr1_1:13599047-13599066 | Msa0009320:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_1:13599057-13599076 | None:intergenic | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_1:13599075-13599094 | None:intergenic | 45.0% | |
| GACAACATGTCTTGTACACC+AGG | - | chr1_1:13599085-13599104 | None:intergenic | 45.0% | |
| !! | TACCGAAAGTGTCGTCGAAT+TGG | + | chr1_1:13599129-13599148 | Msa0009320:CDS | 45.0% |
| GTCCAATTCGACGACACTTT+CGG | - | chr1_1:13599134-13599153 | None:intergenic | 45.0% | |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_1:13599486-13599505 | Msa0009320:CDS | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_1:13599629-13599648 | Msa0009320:CDS | 45.0% | |
| ATAACGCGCTCAGCTTGAGT+TGG | + | chr1_1:13599218-13599237 | Msa0009320:CDS | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_1:13599487-13599506 | Msa0009320:CDS | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_1:13599493-13599512 | None:intergenic | 50.0% | |
| ATAACGCGCTCAGCTTGAGT+TGG | + | chr1_1:13599218-13599237 | Msa0009320:CDS | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_1:13599487-13599506 | Msa0009320:CDS | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_1:13599493-13599512 | None:intergenic | 50.0% | |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_1:13599064-13599083 | Msa0009320:CDS | 55.0% | |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_1:13599614-13599633 | Msa0009320:CDS | 55.0% | |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_1:13599064-13599083 | Msa0009320:CDS | 55.0% | |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_1:13599614-13599633 | Msa0009320:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13598725 | 13599661 | 13598725 | ID=Msa0009320;Name=Msa0009320 |
| chr1_1 | mRNA | 13598725 | 13599661 | 13598725 | ID=Msa0009320-mRNA-1;Parent=Msa0009320;Name=Msa0009320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.33|0.25|1|0.33|0|4|0|251 |
| chr1_1 | exon | 13598725 | 13598953 | 13598725 | ID=Msa0009320-mRNA-1:exon:5179;Parent=Msa0009320-mRNA-1 |
| chr1_1 | exon | 13599002 | 13599173 | 13599002 | ID=Msa0009320-mRNA-1:exon:5180;Parent=Msa0009320-mRNA-1 |
| chr1_1 | exon | 13599216 | 13599334 | 13599216 | ID=Msa0009320-mRNA-1:exon:5181;Parent=Msa0009320-mRNA-1 |
| chr1_1 | exon | 13599429 | 13599661 | 13599429 | ID=Msa0009320-mRNA-1:exon:5182;Parent=Msa0009320-mRNA-1 |
| chr1_1 | CDS | 13598725 | 13598953 | 13598725 | ID=Msa0009320-mRNA-1:cds;Parent=Msa0009320-mRNA-1 |
| chr1_1 | CDS | 13599002 | 13599173 | 13599002 | ID=Msa0009320-mRNA-1:cds;Parent=Msa0009320-mRNA-1 |
| chr1_1 | CDS | 13599216 | 13599334 | 13599216 | ID=Msa0009320-mRNA-1:cds;Parent=Msa0009320-mRNA-1 |
| chr1_1 | CDS | 13599429 | 13599661 | 13599429 | ID=Msa0009320-mRNA-1:cds;Parent=Msa0009320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
