AlfalfaGEDB | Msa0009510

M. sativa cultivar zhongmu-4 / Msa0009510

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009510	XP_013466354.2	90.244	656	21	2	1	614	1	655	0.0	1206

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009510	sp\|P93604\|LRK10_WHEAT	41.084	572	270	16	59	578	71	627	1.06e-128	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009510	A0A396JMB6	90.244	656	21	2	1	614	1	655	0.0	1206

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009510	Msa0009740	0.800616	1.325556e-48	-8.615850e-47
Msa0009510	Msa0343390	0.853580	2.175997e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0009510	MtrunA17_Chr1g0158761	90.244	656	21	2	1	614	1	655	1206
Msa0009510	MtrunA17_Chr1g0157991	51.672	658	217	10	28	586	31	686	636
Msa0009510	MtrunA17_Chr1g0158151	48.525	678	244	15	3	581	2	673	603
Msa0009510	MtrunA17_Chr1g0158661	48.923	650	246	12	10	581	17	658	598
Msa0009510	MtrunA17_Chr1g0158631	48.265	663	245	12	10	581	17	672	593
Msa0009510	MtrunA17_Chr1g0158041	48.858	657	232	13	28	584	29	681	588
Msa0009510	MtrunA17_Chr1g0157911	47.704	675	250	13	9	581	14	687	587
Msa0009510	MtrunA17_Chr1g0158301	47.598	666	253	14	4	577	17	678	582
Msa0009510	MtrunA17_Chr1g0158541	47.852	675	250	16	4	581	15	684	575
Msa0009510	MtrunA17_Chr1g0160701	50.746	603	242	15	32	587	45	639	573

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0009510	AT1G66920.1	37.012	589	320	18	17	577	19	584	5.53e-110	343
Msa0009510	AT1G66920.2	36.516	597	320	17	17	577	19	592	3.84e-109	341
Msa0009510	AT1G66930.1	37.414	580	307	16	34	577	76	635	9.17e-109	342
Msa0009510	AT5G38240.3	48.476	361	160	9	236	587	215	558	7.16e-107	334
Msa0009510	AT5G38260.1	35.843	611	330	20	10	577	16	607	1.65e-106	335
Msa0009510	AT5G38240.2	48.476	361	160	9	236	587	261	604	2.87e-106	334
Msa0009510	AT5G38240.1	48.476	361	160	9	236	587	279	622	5.15e-106	334
Msa0009510	AT1G66910.1	34.803	635	331	20	10	577	16	634	8.13e-106	334
Msa0009510	AT5G38250.1	46.866	367	160	9	230	587	261	601	1.59e-104	329
Msa0009510	AT1G66930.2	36.079	607	306	16	34	577	257	844	5.47e-104	335

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Find 126 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTTGATATAGCTCT+TGG	0.488922	1_1:-14035879	Msa0009510:CDS
AAACTTCACTCCAAAGGTTT+CGG	0.385246	1_1:-14035766	Msa0009510:CDS
AAACTTGGCGAAGGTGGCTA+TGG	0.514946	1_1:-14036158	Msa0009510:CDS
AAAGCAGATGTTTATAGCTT+TGG	0.293855	1_1:-14035621	Msa0009510:CDS
AAAGGATTTAAGGATAAACT+TGG	0.544758	1_1:-14036173	Msa0009510:CDS
AAAGTGGTTGAGTTGCTTGA+AGG	0.503408	1_1:-14035375	Msa0009510:CDS
AACATGGTGAATCGTTCCAA+TGG	0.614240	1_1:+14036031	None:intergenic
AACGATTCACCATGTTAATG+TGG	0.592628	1_1:-14036024	Msa0009510:CDS
AAGAGGGACTATGGGATACA+TGG	0.576724	1_1:-14035685	Msa0009510:CDS
AAGCCATTTCAAACTCCTAA+AGG	0.480704	1_1:-14035324	Msa0009510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACAGGAAAGTTCATAATT+TGG	+	chr1_1:14035398-14035417	None:intergenic	30.0%
ACTACAACAATTCCACAATA+AGG	-	chr1_1:14035474-14035493	Msa0009510:CDS	30.0%
TGAATCTATGATCCTTATTG+TGG	+	chr1_1:14035489-14035508	None:intergenic	30.0%
ACAATAAGGATCATAGATTC+AGG	-	chr1_1:14035488-14035507	Msa0009510:CDS	30.0%
GATACTTCATCTTGTAACAA+AGG	-	chr1_1:14035665-14035684	Msa0009510:CDS	30.0%
ACGACTTCAAAATTGAACAA+CGG	-	chr1_1:14035776-14035795	Msa0009510:CDS	30.0%
ATCCATAAACAAGTTTCTGA+TGG	+	chr1_1:14035829-14035848	None:intergenic	30.0%
TAAGCTGAACAACAAAAATG+AGG	-	chr1_1:14035904-14035923	Msa0009510:CDS	30.0%
AACAACAAAAATGAGGTCAT+TGG	-	chr1_1:14035911-14035930	Msa0009510:CDS	30.0%
TATCATGTTCACAACTAGAA+AGG	+	chr1_1:14036385-14036404	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	14035227	14037790	14035227	ID=Msa0009510;Name=Msa0009510
chr1_1	mRNA	14035227	14037790	14035227	ID=Msa0009510-mRNA-1;Parent=Msa0009510;Name=Msa0009510-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0\|0\|0\|1\|1\|1\|3\|0\|614
chr1_1	exon	14037115	14037790	14037115	ID=Msa0009510-mRNA-1:exon:5276;Parent=Msa0009510-mRNA-1
chr1_1	exon	14036486	14036512	14036486	ID=Msa0009510-mRNA-1:exon:5275;Parent=Msa0009510-mRNA-1
chr1_1	exon	14035227	14036368	14035227	ID=Msa0009510-mRNA-1:exon:5274;Parent=Msa0009510-mRNA-1
chr1_1	CDS	14037115	14037790	14037115	ID=Msa0009510-mRNA-1:cds;Parent=Msa0009510-mRNA-1
chr1_1	CDS	14036486	14036512	14036486	ID=Msa0009510-mRNA-1:cds;Parent=Msa0009510-mRNA-1
chr1_1	CDS	14035227	14036368	14035227	ID=Msa0009510-mRNA-1:cds;Parent=Msa0009510-mRNA-1

Gene Sequence

>Msa0009510

ATGTCTTGGAAAATTCTTGTTAATCTAATTGTTTTGATGATCCTCCTATACCCTCTTCCTTGCCTAGCAGAAACAAAAATTCACCAATGTCTTTCTTCATCTTGTGGCAACATACAAAACATCACTTACCCTTTTCGTCTACAAACCGATCCCGAAAACTGTGGTGATCCAAATTATGAACTTTCCTGTGAGAACAATCAAACAATGCTAAATCTATACAATGGAAAATACTTTGTAGAATCCATCAACTACAACAATTCCACAATAAGGATCATAGATTCAGGTCTCAACAAAGAAAATTGCTCTTCAATTCCTCTCTACACTTTAACAAATGAAAACTTCACCACTGATAAACCATATAGCTTGTTAGATACTAATAACTTAGAAACCATAGCATTTTTAAGCTGTGCAGCTTCAATTAATTCTCCACTTTACATGGATACTTCATCTTGTAACAAAGGATTGATCAATTCTTCAAATTATGCTGTATTCGGTGAGTTGAAAATCTCTGAGTTGGAAGATTCATGCAGCATACTAGTCATGGTAGTTACGACTTCAAAATTGAACAACGGTGGCAAAAACTTTTCGTATTTGAATATCCATCAGAAACTTGTTTATGGATTGGAGCTTTCTTGGCATGAGATATTCTGCAAAGAGTGTCAAGGTAGAGGGTACTGTGCTCACATATTAGGCCTTATCATCGGAATAATCCTTCTGATAAGAATCATAGGTGGTTTACTATTTATCCCGATGTACATGGCATATAAATGGAGAAGGAGGCATTTATCTGCATATGATTCAGTTGAAGAGTTTCTTAAATCTCACAATAATCTCATGCCAATAAGATACTCTTACTCGGACATTAAAAAAATGACAAAAGGATTTAAGGATAAACTTGGCGAAGGTGGCTATGGTTCTGTTTACAAAGGACAGCTTCGCAACGGTCACCTAGTAGCAATCAAGTTGCTAGGTGGAAAATCAAGAGCAAATGGACAAGAATTCATCAATGAAGTTGCTACCATTGGAACGATTCACCATGTTAATGTGGTTCACCTAATTGGCTTTTGTGTTGAGAAAACAAAAAGAGCACTTGTTTATGAGTTCATGCTTAATGGTTCTCTTGAAAAACACATTTTCTCAAGAGAAAAAATGGGTTCTTTGAGTTCCGAGAAAATGTTTGATATAGCTCTTGGTGTAGCGCGTGGTATTGAATATCTACATAGAGGGTGTGACATGAGGATTTTGCATTTTGACATAAAGCCTCATAACATTCTTCTTGACGTAAACTTCACTCCAAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAACTGACAACAGCATTGTGTCGCTTACCGCTGCAAGAGGGACTATGGGATACATGGCGCCAGAGTTGTTCTATAAGAACATTGGAGGAGTATCATATAAAGCAGATGTTTATAGCTTTGGAATGTTGTTAATGGAAATGGCGAGTAGAAGAAGGAACATGAATGAGGGCGAAGATCATAAGAGTCAAGTTTATTTCCCTTCTTGGGTTTATGACCAATTTAGCGAAGGGAAGGAAATAGAGATGGGGAATGGTACAGAAGAGGAGGAGAAGATACTGAAGAAGATGATAATAGTTGCGTTGTGGTGTATACAGATGAAACCAATTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTCCTTGGAAATGCCTCCTAAGCCATTTCAAACTCCTAAAGGAATGCCTGTACAAGGCATTGGACAACTCAGAAATCTACCTTGGTTGCTACCTGGTGATTCTACAAACTCGCTTACCATCGTTATAAATCGACGTTAA

Protein sequence

>Msa0009510

MSWKILVNLIVLMILLYPLPCLAETKIHQCLSSSCGNIQNITYPFRLQTDPENCGDPNYELSCENNQTMLNLYNGKYFVESINYNNSTIRIIDSGLNKENCSSIPLYTLTNENFTTDKPYSLLDTNNLETIAFLSCAASINSPLYMDTSSCNKGLINSSNYAVFGELKISELEDSCSILVMVVTTSKLNNGGKNFSYLNIHQKLVYGLELSWHEIFCKECQGRGYCAHILGLIIGIILLIRIIGGLLFIPMYMAYKWRRRHLSAYDSVEEFLKSHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGQLRNGHLVAIKLLGGKSRANGQEFINEVATIGTIHHVNVVHLIGFCVEKTKRALVYEFMLNGSLEKHIFSREKMGSLSSEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDVNFTPKVSDFGLAKLYPTDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDHKSQVYFPSWVYDQFSEGKEIEMGNGTEEEEKILKKMIIVALWCIQMKPIDRPSMNKVVELLEGDVESLEMPPKPFQTPKGMPVQGIGQLRNLPWLLPGDSTNSLTIVINRR*