Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011750 | Msa0252160 | 0.821645 | 3.615941e-53 | -8.615850e-47 |
| Msa0011750 | Msa1445700 | 0.809868 | 1.529880e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011750 | MtrunA17_Chr1g0160711 | 60.000 | 205 | 38 | 7 | 21 | 183 | 17 | 219 | 4.49e-63 | 207 |
| Msa0011750 | MtrunA17_Chr1g0160761 | 54.185 | 227 | 56 | 7 | 1 | 183 | 1 | 223 | 5.78e-60 | 199 |
| Msa0011750 | MtrunA17_Chr1g0160661 | 52.838 | 229 | 57 | 8 | 1 | 189 | 27 | 244 | 3.30e-59 | 194 |
| Msa0011750 | MtrunA17_Chr1g0160721 | 49.130 | 230 | 64 | 10 | 1 | 189 | 12 | 229 | 1.15e-48 | 169 |
| Msa0011750 | MtrunA17_Chr1g0160701 | 46.512 | 215 | 68 | 10 | 18 | 189 | 33 | 243 | 5.35e-39 | 142 |
| Msa0011750 | MtrunA17_Chr1g0160561 | 42.291 | 227 | 84 | 7 | 3 | 183 | 7 | 232 | 4.62e-37 | 137 |
| Msa0011750 | MtrunA17_Chr1g0158191 | 35.294 | 187 | 74 | 11 | 24 | 163 | 24 | 210 | 2.33e-13 | 68.9 |
| Msa0011750 | MtrunA17_Chr1g0158411 | 27.711 | 249 | 134 | 9 | 2 | 204 | 15 | 263 | 7.21e-13 | 67.4 |
| Msa0011750 | MtrunA17_Chr1g0157991 | 42.553 | 94 | 42 | 3 | 24 | 105 | 28 | 121 | 2.85e-12 | 65.9 |
| Msa0011750 | MtrunA17_Chr1g0158151 | 45.161 | 93 | 39 | 4 | 25 | 105 | 27 | 119 | 7.30e-12 | 64.7 |
| Msa0011750 | MtrunA17_Chr1g0157881 | 40.945 | 127 | 56 | 7 | 8 | 115 | 30 | 156 | 1.31e-11 | 63.9 |
| Msa0011750 | MtrunA17_Chr1g0157791 | 32.778 | 180 | 81 | 7 | 24 | 163 | 28 | 207 | 1.47e-11 | 63.5 |
| Msa0011750 | MtrunA17_Chr1g0157961 | 38.760 | 129 | 60 | 7 | 24 | 133 | 33 | 161 | 8.49e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTCACCATACGATTAT+TGG | 0.109624 | 1_1:-17703480 | Msa0011750:CDS |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 1_1:+17703617 | None:intergenic |
| CTGATTTCTGTATCGATAAT+AGG | 0.292124 | 1_1:+17703364 | None:intergenic |
| AGTATTTAAATAAGTCTATA+TGG | 0.348451 | 1_1:-17702238 | Msa0011750:CDS |
| TTATAGAGTCCCAAAGAATA+AGG | 0.355050 | 1_1:+17703422 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 1_1:-17703194 | Msa0011750:CDS |
| CACCAACATAGAAGGAATTC+TGG | 0.371675 | 1_1:+17703228 | None:intergenic |
| CACCATGACAAAGGACGTTA+AGG | 0.430080 | 1_1:+17703754 | None:intergenic |
| TGAATTGATAGAATCATTTG+TGG | 0.434533 | 1_1:-17702099 | Msa0011750:CDS |
| AGGTAGGGTGAGCCGTAGTA+AGG | 0.438753 | 1_1:+17703389 | None:intergenic |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 1_1:-17703187 | Msa0011750:CDS |
| ATAAGTCTATATGGAGATTG+AGG | 0.448693 | 1_1:-17702229 | Msa0011750:CDS |
| CTATTATCGATACAGAAATC+AGG | 0.457276 | 1_1:-17703363 | Msa0011750:CDS |
| TTGGTAGCCACCAACATAGA+AGG | 0.457483 | 1_1:+17703220 | None:intergenic |
| TTCCTTAACGTCCTTTGTCA+TGG | 0.467294 | 1_1:-17703756 | Msa0011750:CDS |
| ATCAACAAAATCATTTCCAT+TGG | 0.468126 | 1_1:+17702193 | None:intergenic |
| CAGAATTCCTTCTATGTTGG+TGG | 0.484672 | 1_1:-17703227 | Msa0011750:CDS |
| GTATCGATAATAGGCTAGGT+AGG | 0.486364 | 1_1:+17703373 | None:intergenic |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 1_1:-17703188 | Msa0011750:CDS |
| TCATGGCCTCTTGAATATGC+TGG | 0.491208 | 1_1:-17703137 | Msa0011750:CDS |
| TAAGTCTATATGGAGATTGA+GGG | 0.506009 | 1_1:-17702228 | Msa0011750:CDS |
| GTCCCAAAGAATAAGGAGAA+GGG | 0.529780 | 1_1:+17703429 | None:intergenic |
| TAATGAGCAACAAAGTGTAC+GGG | 0.532478 | 1_1:-17703718 | Msa0011750:CDS |
| CTAATGAGCAACAAAGTGTA+CGG | 0.539704 | 1_1:-17703719 | Msa0011750:CDS |
| TACCAGAATTCCTTCTATGT+TGG | 0.557146 | 1_1:-17703230 | Msa0011750:CDS |
| ATTGAAATCCAATAATCGTA+TGG | 0.557777 | 1_1:+17703472 | None:intergenic |
| TACAGAAATCAGGCTCGTCA+TGG | 0.563573 | 1_1:-17703353 | Msa0011750:CDS |
| AATTTCAGCAGCCCTTACTA+CGG | 0.566996 | 1_1:-17703401 | Msa0011750:CDS |
| AGGGGTGGTGAACTTTCCAA+TGG | 0.577516 | 1_1:-17702209 | Msa0011750:CDS |
| AATCTATGTATCTCACATCA+TGG | 0.577666 | 1_1:-17703154 | Msa0011750:CDS |
| TTGTTTCCAGCATATTCAAG+AGG | 0.577989 | 1_1:+17703131 | None:intergenic |
| TTGTACAGACATCCGTCGAA+TGG | 0.581724 | 1_1:-17703102 | Msa0011750:intron |
| TCCCAAAGAATAAGGAGAAG+GGG | 0.587105 | 1_1:+17703430 | None:intergenic |
| ATCCATAAAATACCATTCGA+CGG | 0.588140 | 1_1:+17703090 | None:intergenic |
| CTTAACGTCCTTTGTCATGG+TGG | 0.590510 | 1_1:-17703753 | Msa0011750:CDS |
| TATCGATAATAGGCTAGGTA+GGG | 0.593349 | 1_1:+17703374 | None:intergenic |
| AACAAGAGTCATGTTCAAGA+AGG | 0.596613 | 1_1:-17703688 | Msa0011750:CDS |
| AGTCCCAAAGAATAAGGAGA+AGG | 0.598251 | 1_1:+17703428 | None:intergenic |
| AAGAGTCATGTTCAAGAAGG+TGG | 0.600098 | 1_1:-17703685 | Msa0011750:CDS |
| CACTACTACCACCATGACAA+AGG | 0.608001 | 1_1:+17703745 | None:intergenic |
| TTCTGTATCGATAATAGGCT+AGG | 0.610126 | 1_1:+17703369 | None:intergenic |
| GATTCAGTTGATGAATACGA+TGG | 0.611780 | 1_1:-17703548 | Msa0011750:intron |
| TACGATGGAAAATACTACCA+TGG | 0.625504 | 1_1:-17703533 | Msa0011750:CDS |
| GGTAGGGTGAGCCGTAGTAA+GGG | 0.647916 | 1_1:+17703390 | None:intergenic |
| CCCAAAGAATAAGGAGAAGG+GGG | 0.655074 | 1_1:+17703431 | None:intergenic |
| AAGTCTATATGGAGATTGAG+GGG | 0.658331 | 1_1:-17702227 | Msa0011750:CDS |
| TCTATATGGAGATTGAGGGG+TGG | 0.667854 | 1_1:-17702224 | Msa0011750:CDS |
| TCATGTTCAAGAAGGTGGTG+CGG | 0.678993 | 1_1:-17703680 | Msa0011750:CDS |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 1_1:-17703626 | Msa0011750:intron |
| AATGAGCAACAAAGTGTACG+GGG | 0.756172 | 1_1:-17703717 | Msa0011750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAAATAATTGTTCA+TGG | - | chr1_1:17703021-17703040 | Msa0011750:intron | 10.0% |
| !! | TTAATTAAATAATTGTTCAT+GGG | - | chr1_1:17703022-17703041 | Msa0011750:intron | 10.0% |
| !! | CAATTAAAAAGAATTAATAA+GGG | + | chr1_1:17703233-17703252 | None:intergenic | 10.0% |
| !! | TCAATTAAAAAGAATTAATA+AGG | + | chr1_1:17703234-17703253 | None:intergenic | 10.0% |
| !! | ATTAATTAAATAATTGTTCA+TGG | - | chr1_1:17703021-17703040 | Msa0011750:intron | 10.0% |
| !! | TTAATTAAATAATTGTTCAT+GGG | - | chr1_1:17703022-17703041 | Msa0011750:intron | 10.0% |
| !! | CAATTAAAAAGAATTAATAA+GGG | + | chr1_1:17703233-17703252 | None:intergenic | 10.0% |
| !! | TCAATTAAAAAGAATTAATA+AGG | + | chr1_1:17703234-17703253 | None:intergenic | 10.0% |
| !! | GGAGAAATTATTATTAATAA+CGG | + | chr1_1:17703129-17703148 | None:intergenic | 15.0% |
| !! | TGATATGATTGATAAAAAAA+AGG | + | chr1_1:17703310-17703329 | None:intergenic | 15.0% |
| !! | AGTATTTAAATAAGTCTATA+TGG | - | chr1_1:17703614-17703633 | Msa0011750:intron | 15.0% |
| !! | GGAGAAATTATTATTAATAA+CGG | + | chr1_1:17703129-17703148 | None:intergenic | 15.0% |
| !! | TGATATGATTGATAAAAAAA+AGG | + | chr1_1:17703310-17703329 | None:intergenic | 15.0% |
| !! | AGTATTTAAATAAGTCTATA+TGG | - | chr1_1:17703614-17703633 | Msa0011750:intron | 15.0% |
| !! | AATCATAGTACAAAATCAAT+TGG | + | chr1_1:17702288-17702307 | None:intergenic | 20.0% |
| !!! | AGTTTTTTCTTTAAAGAAAG+TGG | + | chr1_1:17703155-17703174 | None:intergenic | 20.0% |
| !! | TATTGTGTATATAAAACAGA+TGG | - | chr1_1:17703591-17703610 | Msa0011750:intron | 20.0% |
| !! | AATCATAGTACAAAATCAAT+TGG | + | chr1_1:17702288-17702307 | None:intergenic | 20.0% |
| !!! | AGTTTTTTCTTTAAAGAAAG+TGG | + | chr1_1:17703155-17703174 | None:intergenic | 20.0% |
| !! | TATTGTGTATATAAAACAGA+TGG | - | chr1_1:17703591-17703610 | Msa0011750:intron | 20.0% |
| !! | ATTGTACATAGTATTTTCCA+TGG | + | chr1_1:17702339-17702358 | None:intergenic | 25.0% |
| ! | ATTGAAATCCAATAATCGTA+TGG | + | chr1_1:17702383-17702402 | None:intergenic | 25.0% |
| ! | TAAGAATATTCTGTTCGATT+TGG | + | chr1_1:17702556-17702575 | None:intergenic | 25.0% |
| ! | GAATATTCTTACATTGATAG+AGG | - | chr1_1:17702565-17702584 | Msa0011750:intron | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | chr1_1:17702652-17702671 | Msa0011750:intron | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | chr1_1:17702776-17702795 | Msa0011750:intron | 25.0% |
| ! | GTTTAATATGATGATATGAG+TGG | + | chr1_1:17702949-17702968 | None:intergenic | 25.0% |
| ! | TTGTATGAGGTAATGTAAAA+TGG | - | chr1_1:17703091-17703110 | Msa0011750:intron | 25.0% |
| !! | TTTCTTTAAAGAAAGTGGAA+AGG | + | chr1_1:17703150-17703169 | None:intergenic | 25.0% |
| ! | CGTGAGAAATATAAAATTGA+TGG | + | chr1_1:17703196-17703215 | None:intergenic | 25.0% |
| ! | ATCTGTCTCTATTAATGTAA+GGG | + | chr1_1:17703353-17703372 | None:intergenic | 25.0% |
| ! | TATCTGTCTCTATTAATGTA+AGG | + | chr1_1:17703354-17703373 | None:intergenic | 25.0% |
| !! | AATATATCCTTAGCTTTCAT+GGG | + | chr1_1:17703396-17703415 | None:intergenic | 25.0% |
| !! | TAATATATCCTTAGCTTTCA+TGG | + | chr1_1:17703397-17703416 | None:intergenic | 25.0% |
| ! | ATCAACAAAATCATTTCCAT+TGG | + | chr1_1:17703662-17703681 | None:intergenic | 25.0% |
| ! | TGAATTGATAGAATCATTTG+TGG | - | chr1_1:17703753-17703772 | Msa0011750:CDS | 25.0% |
| !! | ATTGTACATAGTATTTTCCA+TGG | + | chr1_1:17702339-17702358 | None:intergenic | 25.0% |
| ! | ATTGAAATCCAATAATCGTA+TGG | + | chr1_1:17702383-17702402 | None:intergenic | 25.0% |
| ! | TAAGAATATTCTGTTCGATT+TGG | + | chr1_1:17702556-17702575 | None:intergenic | 25.0% |
| ! | GAATATTCTTACATTGATAG+AGG | - | chr1_1:17702565-17702584 | Msa0011750:intron | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | chr1_1:17702652-17702671 | Msa0011750:intron | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | chr1_1:17702776-17702795 | Msa0011750:intron | 25.0% |
| ! | GTTTAATATGATGATATGAG+TGG | + | chr1_1:17702949-17702968 | None:intergenic | 25.0% |
| ! | TTGTATGAGGTAATGTAAAA+TGG | - | chr1_1:17703091-17703110 | Msa0011750:intron | 25.0% |
| !! | TTTCTTTAAAGAAAGTGGAA+AGG | + | chr1_1:17703150-17703169 | None:intergenic | 25.0% |
| ! | CGTGAGAAATATAAAATTGA+TGG | + | chr1_1:17703196-17703215 | None:intergenic | 25.0% |
| ! | ATCTGTCTCTATTAATGTAA+GGG | + | chr1_1:17703353-17703372 | None:intergenic | 25.0% |
| ! | TATCTGTCTCTATTAATGTA+AGG | + | chr1_1:17703354-17703373 | None:intergenic | 25.0% |
| !! | AATATATCCTTAGCTTTCAT+GGG | + | chr1_1:17703396-17703415 | None:intergenic | 25.0% |
| !! | TAATATATCCTTAGCTTTCA+TGG | + | chr1_1:17703397-17703416 | None:intergenic | 25.0% |
| ! | ATCAACAAAATCATTTCCAT+TGG | + | chr1_1:17703662-17703681 | None:intergenic | 25.0% |
| ! | TGAATTGATAGAATCATTTG+TGG | - | chr1_1:17703753-17703772 | Msa0011750:CDS | 25.0% |
| TTATAGAGTCCCAAAGAATA+AGG | + | chr1_1:17702433-17702452 | None:intergenic | 30.0% | |
| ! | CTGATTTCTGTATCGATAAT+AGG | + | chr1_1:17702491-17702510 | None:intergenic | 30.0% |
| CTATTATCGATACAGAAATC+AGG | - | chr1_1:17702489-17702508 | Msa0011750:intron | 30.0% | |
| TATTCTTACATTGATAGAGG+TGG | - | chr1_1:17702568-17702587 | Msa0011750:intron | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | chr1_1:17702654-17702673 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | chr1_1:17702651-17702670 | Msa0011750:intron | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_1:17702698-17702717 | Msa0011750:intron | 30.0% | |
| ATCCATAAAATACCATTCGA+CGG | + | chr1_1:17702765-17702784 | None:intergenic | 30.0% | |
| AACTTACTACGTAAAGTCAA+TGG | - | chr1_1:17703064-17703083 | Msa0011750:intron | 30.0% | |
| ATAAGTCTATATGGAGATTG+AGG | - | chr1_1:17703623-17703642 | Msa0011750:intron | 30.0% | |
| TAAGTCTATATGGAGATTGA+GGG | - | chr1_1:17703624-17703643 | Msa0011750:intron | 30.0% | |
| TTATAGAGTCCCAAAGAATA+AGG | + | chr1_1:17702433-17702452 | None:intergenic | 30.0% | |
| ! | CTGATTTCTGTATCGATAAT+AGG | + | chr1_1:17702491-17702510 | None:intergenic | 30.0% |
| CTATTATCGATACAGAAATC+AGG | - | chr1_1:17702489-17702508 | Msa0011750:intron | 30.0% | |
| TATTCTTACATTGATAGAGG+TGG | - | chr1_1:17702568-17702587 | Msa0011750:intron | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | chr1_1:17702654-17702673 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | chr1_1:17702651-17702670 | Msa0011750:intron | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_1:17702698-17702717 | Msa0011750:intron | 30.0% | |
| ATCCATAAAATACCATTCGA+CGG | + | chr1_1:17702765-17702784 | None:intergenic | 30.0% | |
| AACTTACTACGTAAAGTCAA+TGG | - | chr1_1:17703064-17703083 | Msa0011750:intron | 30.0% | |
| ATAAGTCTATATGGAGATTG+AGG | - | chr1_1:17703623-17703642 | Msa0011750:intron | 30.0% | |
| TAAGTCTATATGGAGATTGA+GGG | - | chr1_1:17703624-17703643 | Msa0011750:intron | 30.0% | |
| CTAATGAGCAACAAAGTGTA+CGG | - | chr1_1:17702133-17702152 | Msa0011750:CDS | 35.0% | |
| TAATGAGCAACAAAGTGTAC+GGG | - | chr1_1:17702134-17702153 | Msa0011750:CDS | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_1:17702164-17702183 | Msa0011750:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | chr1_1:17702200-17702219 | Msa0011750:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | chr1_1:17702213-17702232 | None:intergenic | 35.0% |
| !! | GATTCAGTTGATGAATACGA+TGG | - | chr1_1:17702304-17702323 | Msa0011750:intron | 35.0% |
| TACGATGGAAAATACTACCA+TGG | - | chr1_1:17702319-17702338 | Msa0011750:intron | 35.0% | |
| CAACTTCACCATACGATTAT+TGG | - | chr1_1:17702372-17702391 | Msa0011750:intron | 35.0% | |
| TATCGATAATAGGCTAGGTA+GGG | + | chr1_1:17702481-17702500 | None:intergenic | 35.0% | |
| ! | TTCTGTATCGATAATAGGCT+AGG | + | chr1_1:17702486-17702505 | None:intergenic | 35.0% |
| TACCAGAATTCCTTCTATGT+TGG | - | chr1_1:17702622-17702641 | Msa0011750:intron | 35.0% | |
| TTGTTTCCAGCATATTCAAG+AGG | + | chr1_1:17702724-17702743 | None:intergenic | 35.0% | |
| ! | ATCCGTCGAATGGTATTTTA+TGG | - | chr1_1:17702760-17702779 | Msa0011750:intron | 35.0% |
| TTTGAACTTTCTTGGCTCAA+TGG | - | chr1_1:17702784-17702803 | Msa0011750:intron | 35.0% | |
| AGTCAATGGAATCTTGTATG+AGG | - | chr1_1:17703078-17703097 | Msa0011750:intron | 35.0% | |
| !! | TAGTCTTAGTCTTATTCTCG+AGG | - | chr1_1:17703506-17703525 | Msa0011750:CDS | 35.0% |
| AAGTCTATATGGAGATTGAG+GGG | - | chr1_1:17703625-17703644 | Msa0011750:intron | 35.0% | |
| CTAATGAGCAACAAAGTGTA+CGG | - | chr1_1:17702133-17702152 | Msa0011750:CDS | 35.0% | |
| TAATGAGCAACAAAGTGTAC+GGG | - | chr1_1:17702134-17702153 | Msa0011750:CDS | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_1:17702164-17702183 | Msa0011750:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | chr1_1:17702200-17702219 | Msa0011750:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | chr1_1:17702213-17702232 | None:intergenic | 35.0% |
| !! | GATTCAGTTGATGAATACGA+TGG | - | chr1_1:17702304-17702323 | Msa0011750:intron | 35.0% |
| TACGATGGAAAATACTACCA+TGG | - | chr1_1:17702319-17702338 | Msa0011750:intron | 35.0% | |
| CAACTTCACCATACGATTAT+TGG | - | chr1_1:17702372-17702391 | Msa0011750:intron | 35.0% | |
| TATCGATAATAGGCTAGGTA+GGG | + | chr1_1:17702481-17702500 | None:intergenic | 35.0% | |
| ! | TTCTGTATCGATAATAGGCT+AGG | + | chr1_1:17702486-17702505 | None:intergenic | 35.0% |
| TACCAGAATTCCTTCTATGT+TGG | - | chr1_1:17702622-17702641 | Msa0011750:intron | 35.0% | |
| TTGTTTCCAGCATATTCAAG+AGG | + | chr1_1:17702724-17702743 | None:intergenic | 35.0% | |
| ! | ATCCGTCGAATGGTATTTTA+TGG | - | chr1_1:17702760-17702779 | Msa0011750:intron | 35.0% |
| TTTGAACTTTCTTGGCTCAA+TGG | - | chr1_1:17702784-17702803 | Msa0011750:intron | 35.0% | |
| AGTCAATGGAATCTTGTATG+AGG | - | chr1_1:17703078-17703097 | Msa0011750:intron | 35.0% | |
| !! | TAGTCTTAGTCTTATTCTCG+AGG | - | chr1_1:17703506-17703525 | Msa0011750:CDS | 35.0% |
| AAGTCTATATGGAGATTGAG+GGG | - | chr1_1:17703625-17703644 | Msa0011750:intron | 35.0% | |
| TTCCTTAACGTCCTTTGTCA+TGG | - | chr1_1:17702096-17702115 | Msa0011750:CDS | 40.0% | |
| AATGAGCAACAAAGTGTACG+GGG | - | chr1_1:17702135-17702154 | Msa0011750:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | - | chr1_1:17702167-17702186 | Msa0011750:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | chr1_1:17702214-17702233 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | chr1_1:17702217-17702236 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | chr1_1:17702226-17702245 | Msa0011750:CDS | 40.0% | |
| GGTTATTGTCCTCACATGAT+AGG | + | chr1_1:17702267-17702286 | None:intergenic | 40.0% | |
| TCCCAAAGAATAAGGAGAAG+GGG | + | chr1_1:17702425-17702444 | None:intergenic | 40.0% | |
| GTCCCAAAGAATAAGGAGAA+GGG | + | chr1_1:17702426-17702445 | None:intergenic | 40.0% | |
| AGTCCCAAAGAATAAGGAGA+AGG | + | chr1_1:17702427-17702446 | None:intergenic | 40.0% | |
| AATTTCAGCAGCCCTTACTA+CGG | - | chr1_1:17702451-17702470 | Msa0011750:intron | 40.0% | |
| ! | GTATCGATAATAGGCTAGGT+AGG | + | chr1_1:17702482-17702501 | None:intergenic | 40.0% |
| CACCAACATAGAAGGAATTC+TGG | + | chr1_1:17702627-17702646 | None:intergenic | 40.0% | |
| CAGAATTCCTTCTATGTTGG+TGG | - | chr1_1:17702625-17702644 | Msa0011750:intron | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_1:17702658-17702677 | Msa0011750:intron | 40.0% |
| AGTTTGACCCATGAAAGCTA+AGG | - | chr1_1:17703386-17703405 | Msa0011750:CDS | 40.0% | |
| TTCCTTAACGTCCTTTGTCA+TGG | - | chr1_1:17702096-17702115 | Msa0011750:CDS | 40.0% | |
| AATGAGCAACAAAGTGTACG+GGG | - | chr1_1:17702135-17702154 | Msa0011750:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | - | chr1_1:17702167-17702186 | Msa0011750:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | chr1_1:17702214-17702233 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | chr1_1:17702217-17702236 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | chr1_1:17702226-17702245 | Msa0011750:CDS | 40.0% | |
| GGTTATTGTCCTCACATGAT+AGG | + | chr1_1:17702267-17702286 | None:intergenic | 40.0% | |
| TCCCAAAGAATAAGGAGAAG+GGG | + | chr1_1:17702425-17702444 | None:intergenic | 40.0% | |
| GTCCCAAAGAATAAGGAGAA+GGG | + | chr1_1:17702426-17702445 | None:intergenic | 40.0% | |
| AGTCCCAAAGAATAAGGAGA+AGG | + | chr1_1:17702427-17702446 | None:intergenic | 40.0% | |
| AATTTCAGCAGCCCTTACTA+CGG | - | chr1_1:17702451-17702470 | Msa0011750:intron | 40.0% | |
| ! | GTATCGATAATAGGCTAGGT+AGG | + | chr1_1:17702482-17702501 | None:intergenic | 40.0% |
| CACCAACATAGAAGGAATTC+TGG | + | chr1_1:17702627-17702646 | None:intergenic | 40.0% | |
| CAGAATTCCTTCTATGTTGG+TGG | - | chr1_1:17702625-17702644 | Msa0011750:intron | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_1:17702658-17702677 | Msa0011750:intron | 40.0% |
| AGTTTGACCCATGAAAGCTA+AGG | - | chr1_1:17703386-17703405 | Msa0011750:CDS | 40.0% | |
| CACCATGACAAAGGACGTTA+AGG | + | chr1_1:17702101-17702120 | None:intergenic | 45.0% | |
| CTTAACGTCCTTTGTCATGG+TGG | - | chr1_1:17702099-17702118 | Msa0011750:CDS | 45.0% | |
| CACTACTACCACCATGACAA+AGG | + | chr1_1:17702110-17702129 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | - | chr1_1:17702172-17702191 | Msa0011750:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | chr1_1:17702238-17702257 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | chr1_1:17702236-17702255 | Msa0011750:CDS | 45.0% | |
| GAGGTACAACCTATCATGTG+AGG | - | chr1_1:17702255-17702274 | Msa0011750:intron | 45.0% | |
| ACCCCCTTCTCCTTATTCTT+TGG | - | chr1_1:17702420-17702439 | Msa0011750:intron | 45.0% | |
| CCCAAAGAATAAGGAGAAGG+GGG | + | chr1_1:17702424-17702443 | None:intergenic | 45.0% | |
| CCCCCTTCTCCTTATTCTTT+GGG | - | chr1_1:17702421-17702440 | Msa0011750:intron | 45.0% | |
| TACAGAAATCAGGCTCGTCA+TGG | - | chr1_1:17702499-17702518 | Msa0011750:intron | 45.0% | |
| ! | TTGGTAGCCACCAACATAGA+AGG | + | chr1_1:17702635-17702654 | None:intergenic | 45.0% |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_1:17702664-17702683 | Msa0011750:intron | 45.0% |
| TCATGGCCTCTTGAATATGC+TGG | - | chr1_1:17702715-17702734 | Msa0011750:intron | 45.0% | |
| TTGTACAGACATCCGTCGAA+TGG | - | chr1_1:17702750-17702769 | Msa0011750:intron | 45.0% | |
| TCTATATGGAGATTGAGGGG+TGG | - | chr1_1:17703628-17703647 | Msa0011750:CDS | 45.0% | |
| CACCATGACAAAGGACGTTA+AGG | + | chr1_1:17702101-17702120 | None:intergenic | 45.0% | |
| CTTAACGTCCTTTGTCATGG+TGG | - | chr1_1:17702099-17702118 | Msa0011750:CDS | 45.0% | |
| CACTACTACCACCATGACAA+AGG | + | chr1_1:17702110-17702129 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | - | chr1_1:17702172-17702191 | Msa0011750:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | chr1_1:17702238-17702257 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | chr1_1:17702236-17702255 | Msa0011750:CDS | 45.0% | |
| GAGGTACAACCTATCATGTG+AGG | - | chr1_1:17702255-17702274 | Msa0011750:intron | 45.0% | |
| ACCCCCTTCTCCTTATTCTT+TGG | - | chr1_1:17702420-17702439 | Msa0011750:intron | 45.0% | |
| CCCAAAGAATAAGGAGAAGG+GGG | + | chr1_1:17702424-17702443 | None:intergenic | 45.0% | |
| CCCCCTTCTCCTTATTCTTT+GGG | - | chr1_1:17702421-17702440 | Msa0011750:intron | 45.0% | |
| TACAGAAATCAGGCTCGTCA+TGG | - | chr1_1:17702499-17702518 | Msa0011750:intron | 45.0% | |
| ! | TTGGTAGCCACCAACATAGA+AGG | + | chr1_1:17702635-17702654 | None:intergenic | 45.0% |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_1:17702664-17702683 | Msa0011750:intron | 45.0% |
| TCATGGCCTCTTGAATATGC+TGG | - | chr1_1:17702715-17702734 | Msa0011750:intron | 45.0% | |
| TTGTACAGACATCCGTCGAA+TGG | - | chr1_1:17702750-17702769 | Msa0011750:intron | 45.0% | |
| TCTATATGGAGATTGAGGGG+TGG | - | chr1_1:17703628-17703647 | Msa0011750:CDS | 45.0% | |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_1:17702665-17702684 | Msa0011750:intron | 50.0% |
| AGGGGTGGTGAACTTTCCAA+TGG | - | chr1_1:17703643-17703662 | Msa0011750:CDS | 50.0% | |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_1:17702665-17702684 | Msa0011750:intron | 50.0% |
| AGGGGTGGTGAACTTTCCAA+TGG | - | chr1_1:17703643-17703662 | Msa0011750:CDS | 50.0% | |
| GGTAGGGTGAGCCGTAGTAA+GGG | + | chr1_1:17702465-17702484 | None:intergenic | 55.0% | |
| AGGTAGGGTGAGCCGTAGTA+AGG | + | chr1_1:17702466-17702485 | None:intergenic | 55.0% | |
| GGTAGGGTGAGCCGTAGTAA+GGG | + | chr1_1:17702465-17702484 | None:intergenic | 55.0% | |
| AGGTAGGGTGAGCCGTAGTA+AGG | + | chr1_1:17702466-17702485 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17702091 | 17703783 | 17702091 | ID=Msa0011750;Name=Msa0011750 |
| chr1_1 | mRNA | 17702091 | 17703783 | 17702091 | ID=Msa0011750-mRNA-1;Parent=Msa0011750;Name=Msa0011750-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.75|1|1|4|0|237 |
| chr1_1 | exon | 17703627 | 17703783 | 17703627 | ID=Msa0011750-mRNA-1:exon:6504;Parent=Msa0011750-mRNA-1 |
| chr1_1 | exon | 17703331 | 17703563 | 17703331 | ID=Msa0011750-mRNA-1:exon:6503;Parent=Msa0011750-mRNA-1 |
| chr1_1 | exon | 17703103 | 17703252 | 17703103 | ID=Msa0011750-mRNA-1:exon:6502;Parent=Msa0011750-mRNA-1 |
| chr1_1 | exon | 17702091 | 17702264 | 17702091 | ID=Msa0011750-mRNA-1:exon:6501;Parent=Msa0011750-mRNA-1 |
| chr1_1 | CDS | 17703627 | 17703783 | 17703627 | ID=Msa0011750-mRNA-1:cds;Parent=Msa0011750-mRNA-1 |
| chr1_1 | CDS | 17703331 | 17703563 | 17703331 | ID=Msa0011750-mRNA-1:cds;Parent=Msa0011750-mRNA-1 |
| chr1_1 | CDS | 17703103 | 17703252 | 17703103 | ID=Msa0011750-mRNA-1:cds;Parent=Msa0011750-mRNA-1 |
| chr1_1 | CDS | 17702091 | 17702264 | 17702091 | ID=Msa0011750-mRNA-1:cds;Parent=Msa0011750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
