AlfalfaGEDB | Msa0013190

M. sativa cultivar zhongmu-4 / Msa0013190

KEGG: K14498
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005985 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006638 GO:0006639 GO:0006641 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009311 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010119 GO:0010359 GO:0010646 GO:0010647 GO:0010857 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019432 GO:0019538 GO:0019752 GO:0019899 GO:0019902 GO:0019903 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0033559 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0043436 GO:0044070 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044262 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0046777 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902456 GO:1903959 GO:1905957 GO:1905959 GO:2000377
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0013190	sp\|Q940H6\|SRK2E_ARATH	77.247	356	45	3	11	331	8	362	0.0	535

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0013190	A0A072VGL4	89.863	365	3	1	1	331	1	365	0.0	667

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013190	Msa0111180	0.805448	1.328511e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0013190	MtrunA17_Chr1g0162301	89.863	365	3	1	1	331	1	365	0.0	667
Msa0013190	MtrunA17_Chr4g0045371	78.830	359	41	2	7	331	6	363	0.0	575
Msa0013190	MtrunA17_Chr8g0374571	74.011	354	56	3	12	331	11	362	0.0	528
Msa0013190	MtrunA17_Chr5g0402661	70.056	354	68	3	12	331	6	355	1.25e-175	490
Msa0013190	MtrunA17_Chr4g0055451	63.636	330	82	3	22	315	3	330	7.30e-155	437
Msa0013190	MtrunA17_Chr2g0277501	64.174	321	79	3	22	307	2	321	1.13e-147	419
Msa0013190	MtrunA17_Chr8g0385281	65.781	301	68	2	22	287	3	303	3.62e-145	413
Msa0013190	MtrunA17_Chr8g0381821	64.241	316	77	3	22	303	2	315	1.93e-144	411
Msa0013190	MtrunA17_Chr5g0426521	60.058	343	92	6	22	328	2	335	2.06e-144	411
Msa0013190	MtrunA17_Chr3g0131061	64.120	301	73	2	22	287	2	302	1.23e-141	404

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0013190	AT4G33950.1	77.247	356	45	3	11	331	8	362	0.0	535
Msa0013190	AT4G33950.2	78.154	325	36	2	11	301	8	331	0.0	519
Msa0013190	AT5G66880.1	70.391	358	70	3	8	331	6	361	7.14e-179	499
Msa0013190	AT5G66880.2	70.391	358	70	3	8	331	6	361	7.14e-179	499
Msa0013190	AT3G50500.1	66.301	365	86	4	1	331	1	362	3.04e-170	478
Msa0013190	AT3G50500.2	65.054	372	86	5	1	331	1	369	7.87e-168	472
Msa0013190	AT1G10940.1	65.677	303	65	3	22	287	2	302	9.21e-146	416
Msa0013190	AT1G10940.2	63.987	311	65	3	22	287	2	310	1.83e-144	412
Msa0013190	AT1G60940.1	65.232	302	70	2	22	288	2	303	3.06e-144	411
Msa0013190	AT1G60940.2	65.232	302	70	2	22	288	2	303	3.06e-144	411

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Find 99 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACAAATCTTCAAACG+AGG	0.709346	1_1:-20406149	None:intergenic
AAGAAAAGACACATCTACAA+AGG	0.644665	1_1:+20407483	Msa0013190:three_prime_UTR
AATAATGCAGATAATTAGCG+AGG	0.639753	1_1:+20407255	Msa0013190:CDS
ACATTCACAACCAAAATCTA+CGG	0.593073	1_1:+20406295	Msa0013190:CDS
ACCCACCAACATGACATATA+AGG	0.437995	1_1:-20406681	None:intergenic
ACCTTATATGTCATGTTGGT+GGG	0.537635	1_1:+20406680	Msa0013190:CDS
ACTATGAACCATGTTGCACA+TGG	0.602664	1_1:+20404850	Msa0013190:CDS
ACTGCTATCGATATCAAGGT+CGG	0.651041	1_1:-20407377	None:intergenic
ACTTAAGTTTCACCTGTGCA+GGG	0.589935	1_1:-20406928	None:intergenic
ACTTCAGGAGCAATGTATGC+AGG	0.507092	1_1:-20406326	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAGATACATGTATGTAATG+TGG	-	chr1_1:20404379-20404398	None:intergenic	30.0%
ATACATGTATCTAGATTCTC+TGG	+	chr1_1:20404385-20404404	Msa0013190:five_prime_UTR	30.0%
GATTTACATGCTTAGATTTG+AGG	+	chr1_1:20405368-20405387	Msa0013190:intron	30.0%
GAAGAAATATGATAAGACAC+TGG	-	chr1_1:20405577-20405596	None:intergenic	30.0%
ATATTTGACGAGTATGAGTA+CGG	-	chr1_1:20405621-20405640	None:intergenic	30.0%
TACTCATACTCGTCAAATAT+AGG	+	chr1_1:20405621-20405640	Msa0013190:intron	30.0%
TTCTTCCAACAACTTATATC+AGG	+	chr1_1:20405936-20405955	Msa0013190:CDS	30.0%
TCTTCCAACAACTTATATCA+GGG	+	chr1_1:20405937-20405956	Msa0013190:CDS	30.0%
ATTTGCTTCCTGAAAGATAT+AGG	+	chr1_1:20406025-20406044	Msa0013190:intron	30.0%
TTTGCTTCCTGAAAGATATA+GGG	+	chr1_1:20406026-20406045	Msa0013190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	20404363	20407571	20404363	ID=Msa0013190;Name=Msa0013190
chr1_1	mRNA	20404363	20407571	20404363	ID=Msa0013190-mRNA-1;Parent=Msa0013190;Name=Msa0013190-mRNA-1;_AED=0.25;_eAED=0.25;_QI=231\|0.87\|1\|1\|0.87\|0.77\|9\|148\|331
chr1_1	exon	20404363	20404589	20404363	ID=Msa0013190-mRNA-1:exon:7268;Parent=Msa0013190-mRNA-1
chr1_1	exon	20404837	20405020	20404837	ID=Msa0013190-mRNA-1:exon:7269;Parent=Msa0013190-mRNA-1
chr1_1	exon	20405482	20405556	20405482	ID=Msa0013190-mRNA-1:exon:7270;Parent=Msa0013190-mRNA-1
chr1_1	exon	20405927	20405980	20405927	ID=Msa0013190-mRNA-1:exon:7271;Parent=Msa0013190-mRNA-1
chr1_1	exon	20406092	20406184	20406092	ID=Msa0013190-mRNA-1:exon:7272;Parent=Msa0013190-mRNA-1
chr1_1	exon	20406284	20406376	20406284	ID=Msa0013190-mRNA-1:exon:7273;Parent=Msa0013190-mRNA-1
chr1_1	exon	20406653	20406757	20406653	ID=Msa0013190-mRNA-1:exon:7274;Parent=Msa0013190-mRNA-1
chr1_1	exon	20406839	20406937	20406839	ID=Msa0013190-mRNA-1:exon:7275;Parent=Msa0013190-mRNA-1
chr1_1	exon	20407127	20407571	20407127	ID=Msa0013190-mRNA-1:exon:7276;Parent=Msa0013190-mRNA-1
chr1_1	five_prime_UTR	20404363	20404589	20404363	ID=Msa0013190-mRNA-1:five_prime_utr;Parent=Msa0013190-mRNA-1
chr1_1	five_prime_UTR	20404837	20404840	20404837	ID=Msa0013190-mRNA-1:five_prime_utr;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20404841	20405020	20404841	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20405482	20405556	20405482	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20405927	20405980	20405927	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20406092	20406184	20406092	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20406284	20406376	20406284	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20406653	20406757	20406653	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20406839	20406937	20406839	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	CDS	20407127	20407423	20407127	ID=Msa0013190-mRNA-1:cds;Parent=Msa0013190-mRNA-1
chr1_1	three_prime_UTR	20407424	20407571	20407424	ID=Msa0013190-mRNA-1:three_prime_utr;Parent=Msa0013190-mRNA-1

Gene Sequence

>Msa0013190

ATGGATCCTACTATGAACCATGTTGCACATGGAGGAATGGATAAACAGATTATGCATGAGAGTGATAGATATGAGCTTGTACGTGATATTGGGTCTGGGAATTTTGGGGTGGCTAGACTTATGAGAGATAAGCATACTAATCAACTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGCACGGTTTTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTTTGTCACCGTGACTTGAAACTGGAGAATACCTTGCTCGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGATATTCAAAGTCTTCAGTGCTACATTCACAACCAAAATCTACGGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATACGATGGCAAGATTGCAGACGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCGTATCCTTTCGAGGATCCGGAGGAGCCTAAAAATTTCCGCAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATACCTGATTATGTTCAAATCTCTCCCGAGTGTCGTCATCTGATCTCAAGGATCTTCGTTGGAGACCCTGCACAGAGAATAAGCATGGCGGAGATTCGAAACCACGATTGGTTTTTGAAGAACCTTCCAGCCGATCTTATCGTTGGGAATACAACGAGTGAGCAGTTTCAAGAACCTGAACAACCAATGCAAACAATTGAAGAAATAATGCAGATAATTAGCGAGGCTACTATTCCTGCAGCCGGAACTCATCAGTCTCTCACTCAGTATCTTACTGGTAGCTTGGACATCGATGACGAAATGGACGAGGATATAGATACTGATCCCGACCTTGATATCGATAGCAGTGGTGAAATAGTTTATGCAATGTAA

Protein sequence

>Msa0013190

MDPTMNHVAHGGMDKQIMHESDRYELVRDIGSGNFGVARLMRDKHTNQLVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVQISPECRHLISRIFVGDPAQRISMAEIRNHDWFLKNLPADLIVGNTTSEQFQEPEQPMQTIEEIMQIISEATIPAAGTHQSLTQYLTGSLDIDDEMDEDIDTDPDLDIDSSGEIVYAM*