Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015870 | XP_003590011.1 | 93.750 | 96 | 6 | 0 | 67 | 162 | 91 | 186 | 6.16e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015870 | Msa0193610 | 0.801300 | 9.610749e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015870 | MtrunA17_Chr1g0167501 | 88.350 | 103 | 12 | 0 | 60 | 162 | 188 | 290 | 5.25e-52 | 167 |
| Msa0015870 | MtrunA17_Chr1g0187721 | 47.154 | 123 | 50 | 5 | 46 | 162 | 29 | 142 | 9.25e-27 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015870 | AT4G14380.1 | 61.111 | 54 | 21 | 0 | 109 | 162 | 147 | 200 | 5.84e-18 | 77.4 |
Find 35 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTTCGTGAAGATATA+AGG | 0.252185 | 1_1:+26010360 | Msa0015870:CDS |
| AGGATCACTGTGCGATCAAC+AGG | 0.420209 | 1_1:-26010098 | None:intergenic |
| CGCCACCATTGGCGTTATGC+CGG | 0.472214 | 1_1:-26009571 | None:intergenic |
| AACGGTGGCGGAAGATGCTC+CGG | 0.475729 | 1_1:+26009552 | Msa0015870:CDS |
| CATGGAAAGTTGTGGTTGCT+AGG | 0.488094 | 1_1:+26010294 | Msa0015870:CDS |
| AATGTTGCAAGTGGATCAAA+AGG | 0.493765 | 1_1:+26010322 | Msa0015870:CDS |
| TAGTATAGACCTTGCACGTA+AGG | 0.495771 | 1_1:-26010118 | None:intergenic |
| ACTACTATTCATAGAAGAAA+CGG | 0.501679 | 1_1:-26010177 | None:intergenic |
| CGAAGACTCATCGCCACCAT+TGG | 0.503703 | 1_1:-26009582 | None:intergenic |
| ATACAAGTGATGAGGCCGTT+GGG | 0.526601 | 1_1:+26010044 | Msa0015870:CDS |
| TGGATGAGAGGCAACGGTGG+CGG | 0.527006 | 1_1:+26009540 | Msa0015870:CDS |
| CACAGTGATCCTTACGTGCA+AGG | 0.549471 | 1_1:+26010109 | Msa0015870:CDS |
| CAATGATGTAGACACTATAG+AGG | 0.549886 | 1_1:+26010268 | Msa0015870:CDS |
| CAAGGTCTATACTAATTCAA+AGG | 0.568530 | 1_1:+26010127 | Msa0015870:CDS |
| AACAAGTAGAGAAATTGAAA+AGG | 0.571929 | 1_1:+26010226 | Msa0015870:CDS |
| GTGTAACGAAAGGTTCCTGC+AGG | 0.572855 | 1_1:+26009607 | Msa0015870:CDS |
| ACTGTGCGATCAACAGGTGC+AGG | 0.574400 | 1_1:-26010092 | None:intergenic |
| TAGACACTATAGAGGATGCA+TGG | 0.587531 | 1_1:+26010276 | Msa0015870:CDS |
| TATACAAGTGATGAGGCCGT+TGG | 0.587826 | 1_1:+26010043 | Msa0015870:CDS |
| ATGCTCCGGCATAACGCCAA+TGG | 0.590900 | 1_1:+26009566 | Msa0015870:CDS |
| ATGGTGGCGATGAGTCTTCG+CGG | 0.591683 | 1_1:+26009585 | Msa0015870:CDS |
| CTCCGGCATAACGCCAATGG+TGG | 0.596829 | 1_1:+26009569 | Msa0015870:CDS |
| CATTGCTTGAATTTCATGAG+AGG | 0.602579 | 1_1:+26010399 | Msa0015870:CDS |
| AGTCTTCGCGGTGTAACGAA+AGG | 0.615628 | 1_1:+26009597 | Msa0015870:CDS |
| GTCCGGTGATAATGGATGAG+AGG | 0.628523 | 1_1:+26009528 | None:intergenic |
| TGATAATGGATGAGAGGCAA+CGG | 0.629529 | 1_1:+26009534 | None:intergenic |
| TTGGGACGTTCTAACCTAGT+CGG | 0.631727 | 1_1:+26010062 | Msa0015870:CDS |
| GTGCAGGTTGATAACCGACT+AGG | 0.654833 | 1_1:-26010076 | None:intergenic |
| TAGGTCTCCAATGTTGCAAG+TGG | 0.662107 | 1_1:+26010313 | Msa0015870:CDS |
| AGTAGACTATACAAGTGATG+AGG | 0.669120 | 1_1:+26010036 | Msa0015870:intron |
| AGAGGATGCATGGAAAGTTG+TGG | 0.674113 | 1_1:+26010286 | Msa0015870:CDS |
| AGTAATATTAGTCATGCACA+AGG | 0.689144 | 1_1:+26010200 | Msa0015870:CDS |
| ACTAGGTTAGAACGTCCCAA+CGG | 0.697597 | 1_1:-26010059 | None:intergenic |
| TAATGGATGAGAGGCAACGG+TGG | 0.710621 | 1_1:+26009537 | None:intergenic |
| CTATTCATAGAAGAAACGGA+AGG | 0.723878 | 1_1:-26010173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAATAAAAGAGTTCA+GGG | + | chr1_1:26009866-26009885 | Msa0015870:intron | 15.0% |
| !! | ATATAAAATAAAAGAGTTCA+GGG | + | chr1_1:26009866-26009885 | Msa0015870:intron | 15.0% |
| !! | GATATAAAATAAAAGAGTTC+AGG | + | chr1_1:26009865-26009884 | Msa0015870:intron | 20.0% |
| !! | AATATCCAACAAAATAAGTA+GGG | - | chr1_1:26009984-26010003 | None:intergenic | 20.0% |
| !! | TAATATCCAACAAAATAAGT+AGG | - | chr1_1:26009985-26010004 | None:intergenic | 20.0% |
| !! | ATAAATTTCGTGAAGATATA+AGG | + | chr1_1:26010360-26010379 | Msa0015870:CDS | 20.0% |
| !! | GATATAAAATAAAAGAGTTC+AGG | + | chr1_1:26009865-26009884 | Msa0015870:intron | 20.0% |
| !! | AATATCCAACAAAATAAGTA+GGG | - | chr1_1:26009984-26010003 | None:intergenic | 20.0% |
| !! | TAATATCCAACAAAATAAGT+AGG | - | chr1_1:26009985-26010004 | None:intergenic | 20.0% |
| !! | ATAAATTTCGTGAAGATATA+AGG | + | chr1_1:26010360-26010379 | Msa0015870:CDS | 20.0% |
| ! | ATATCCAACAAAATAAGTAG+GGG | - | chr1_1:26009983-26010002 | None:intergenic | 25.0% |
| ! | ACTACTATTCATAGAAGAAA+CGG | - | chr1_1:26010180-26010199 | None:intergenic | 25.0% |
| ! | AACAAGTAGAGAAATTGAAA+AGG | + | chr1_1:26010226-26010245 | Msa0015870:CDS | 25.0% |
| ! | ATATCCAACAAAATAAGTAG+GGG | - | chr1_1:26009983-26010002 | None:intergenic | 25.0% |
| ! | ACTACTATTCATAGAAGAAA+CGG | - | chr1_1:26010180-26010199 | None:intergenic | 25.0% |
| ! | AACAAGTAGAGAAATTGAAA+AGG | + | chr1_1:26010226-26010245 | Msa0015870:CDS | 25.0% |
| ! | ATAATCAACTCCGGATTTTA+CGG | + | chr1_1:26009755-26009774 | Msa0015870:intron | 30.0% |
| TATCCAACAAAATAAGTAGG+GGG | - | chr1_1:26009982-26010001 | None:intergenic | 30.0% | |
| CAAGGTCTATACTAATTCAA+AGG | + | chr1_1:26010127-26010146 | Msa0015870:CDS | 30.0% | |
| AGTAATATTAGTCATGCACA+AGG | + | chr1_1:26010200-26010219 | Msa0015870:CDS | 30.0% | |
| ! | ATAATCAACTCCGGATTTTA+CGG | + | chr1_1:26009755-26009774 | Msa0015870:intron | 30.0% |
| TATCCAACAAAATAAGTAGG+GGG | - | chr1_1:26009982-26010001 | None:intergenic | 30.0% | |
| CAAGGTCTATACTAATTCAA+AGG | + | chr1_1:26010127-26010146 | Msa0015870:CDS | 30.0% | |
| AGTAATATTAGTCATGCACA+AGG | + | chr1_1:26010200-26010219 | Msa0015870:CDS | 30.0% | |
| AAAAGTGAACCATACCTTGA+GGG | + | chr1_1:26009695-26009714 | Msa0015870:intron | 35.0% | |
| TTGCAACAGAGTAAATTACC+TGG | + | chr1_1:26009913-26009932 | Msa0015870:intron | 35.0% | |
| ! | TACTTTTCTGCAATCAAACC+AGG | - | chr1_1:26009934-26009953 | None:intergenic | 35.0% |
| ATCCAACAAAATAAGTAGGG+GGG | - | chr1_1:26009981-26010000 | None:intergenic | 35.0% | |
| AGTAGACTATACAAGTGATG+AGG | + | chr1_1:26010036-26010055 | Msa0015870:intron | 35.0% | |
| CTATTCATAGAAGAAACGGA+AGG | - | chr1_1:26010176-26010195 | None:intergenic | 35.0% | |
| CAATGATGTAGACACTATAG+AGG | + | chr1_1:26010268-26010287 | Msa0015870:CDS | 35.0% | |
| ! | TTTTGATCCACTTGCAACAT+TGG | - | chr1_1:26010323-26010342 | None:intergenic | 35.0% |
| AATGTTGCAAGTGGATCAAA+AGG | + | chr1_1:26010322-26010341 | Msa0015870:CDS | 35.0% | |
| CATTGCTTGAATTTCATGAG+AGG | + | chr1_1:26010399-26010418 | Msa0015870:CDS | 35.0% | |
| AAAAGTGAACCATACCTTGA+GGG | + | chr1_1:26009695-26009714 | Msa0015870:intron | 35.0% | |
| TTGCAACAGAGTAAATTACC+TGG | + | chr1_1:26009913-26009932 | Msa0015870:intron | 35.0% | |
| ! | TACTTTTCTGCAATCAAACC+AGG | - | chr1_1:26009934-26009953 | None:intergenic | 35.0% |
| ATCCAACAAAATAAGTAGGG+GGG | - | chr1_1:26009981-26010000 | None:intergenic | 35.0% | |
| AGTAGACTATACAAGTGATG+AGG | + | chr1_1:26010036-26010055 | Msa0015870:intron | 35.0% | |
| CTATTCATAGAAGAAACGGA+AGG | - | chr1_1:26010176-26010195 | None:intergenic | 35.0% | |
| CAATGATGTAGACACTATAG+AGG | + | chr1_1:26010268-26010287 | Msa0015870:CDS | 35.0% | |
| ! | TTTTGATCCACTTGCAACAT+TGG | - | chr1_1:26010323-26010342 | None:intergenic | 35.0% |
| AATGTTGCAAGTGGATCAAA+AGG | + | chr1_1:26010322-26010341 | Msa0015870:CDS | 35.0% | |
| CATTGCTTGAATTTCATGAG+AGG | + | chr1_1:26010399-26010418 | Msa0015870:CDS | 35.0% | |
| GAAAAGTGAACCATACCTTG+AGG | + | chr1_1:26009694-26009713 | Msa0015870:intron | 40.0% | |
| AAGCAATGCCACCCTTATAT+AGG | + | chr1_1:26009720-26009739 | Msa0015870:intron | 40.0% | |
| GCATTGGGAATAATCAACTC+CGG | + | chr1_1:26009746-26009765 | Msa0015870:intron | 40.0% | |
| TAATCACACGCCGTAAAATC+CGG | - | chr1_1:26009768-26009787 | None:intergenic | 40.0% | |
| ! | GATTTTACGGCGTGTGATTA+GGG | + | chr1_1:26009768-26009787 | Msa0015870:intron | 40.0% |
| ACTGTTAGAGGACACATGTA+GGG | + | chr1_1:26009791-26009810 | Msa0015870:intron | 40.0% | |
| GATTGCAGAAAAGTAAGCAG+CGG | + | chr1_1:26009939-26009958 | Msa0015870:intron | 40.0% | |
| !!! | ATCCCCCCTACTTATTTTGT+TGG | + | chr1_1:26009976-26009995 | Msa0015870:intron | 40.0% |
| TAGTATAGACCTTGCACGTA+AGG | - | chr1_1:26010121-26010140 | None:intergenic | 40.0% | |
| TAGACACTATAGAGGATGCA+TGG | + | chr1_1:26010276-26010295 | Msa0015870:CDS | 40.0% | |
| GAAAAGTGAACCATACCTTG+AGG | + | chr1_1:26009694-26009713 | Msa0015870:intron | 40.0% | |
| AAGCAATGCCACCCTTATAT+AGG | + | chr1_1:26009720-26009739 | Msa0015870:intron | 40.0% | |
| GCATTGGGAATAATCAACTC+CGG | + | chr1_1:26009746-26009765 | Msa0015870:intron | 40.0% | |
| TAATCACACGCCGTAAAATC+CGG | - | chr1_1:26009768-26009787 | None:intergenic | 40.0% | |
| ! | GATTTTACGGCGTGTGATTA+GGG | + | chr1_1:26009768-26009787 | Msa0015870:intron | 40.0% |
| ACTGTTAGAGGACACATGTA+GGG | + | chr1_1:26009791-26009810 | Msa0015870:intron | 40.0% | |
| GATTGCAGAAAAGTAAGCAG+CGG | + | chr1_1:26009939-26009958 | Msa0015870:intron | 40.0% | |
| !!! | ATCCCCCCTACTTATTTTGT+TGG | + | chr1_1:26009976-26009995 | Msa0015870:intron | 40.0% |
| TAGTATAGACCTTGCACGTA+AGG | - | chr1_1:26010121-26010140 | None:intergenic | 40.0% | |
| TAGACACTATAGAGGATGCA+TGG | + | chr1_1:26010276-26010295 | Msa0015870:CDS | 40.0% | |
| TCCAACGCTCAAGTCATTGA+TGG | + | chr1_1:26009641-26009660 | Msa0015870:intron | 45.0% | |
| TCCATCAATGACTTGAGCGT+TGG | - | chr1_1:26009645-26009664 | None:intergenic | 45.0% | |
| ATTGCTTCACCCTCAAGGTA+TGG | - | chr1_1:26009707-26009726 | None:intergenic | 45.0% | |
| ! | GGATTTTACGGCGTGTGATT+AGG | + | chr1_1:26009767-26009786 | Msa0015870:intron | 45.0% |
| GTGTGATTAGGGACTGTTAG+AGG | + | chr1_1:26009779-26009798 | Msa0015870:intron | 45.0% | |
| GACTGTTAGAGGACACATGT+AGG | + | chr1_1:26009790-26009809 | Msa0015870:intron | 45.0% | |
| CAGAAAAGTAAGCAGCGGTT+AGG | + | chr1_1:26009944-26009963 | Msa0015870:intron | 45.0% | |
| TATACAAGTGATGAGGCCGT+TGG | + | chr1_1:26010043-26010062 | Msa0015870:CDS | 45.0% | |
| ATACAAGTGATGAGGCCGTT+GGG | + | chr1_1:26010044-26010063 | Msa0015870:CDS | 45.0% | |
| ACTAGGTTAGAACGTCCCAA+CGG | - | chr1_1:26010062-26010081 | None:intergenic | 45.0% | |
| TTGGGACGTTCTAACCTAGT+CGG | + | chr1_1:26010062-26010081 | Msa0015870:CDS | 45.0% | |
| AGAGGATGCATGGAAAGTTG+TGG | + | chr1_1:26010286-26010305 | Msa0015870:CDS | 45.0% | |
| CATGGAAAGTTGTGGTTGCT+AGG | + | chr1_1:26010294-26010313 | Msa0015870:CDS | 45.0% | |
| TAGGTCTCCAATGTTGCAAG+TGG | + | chr1_1:26010313-26010332 | Msa0015870:CDS | 45.0% | |
| TCCAACGCTCAAGTCATTGA+TGG | + | chr1_1:26009641-26009660 | Msa0015870:intron | 45.0% | |
| TCCATCAATGACTTGAGCGT+TGG | - | chr1_1:26009645-26009664 | None:intergenic | 45.0% | |
| ATTGCTTCACCCTCAAGGTA+TGG | - | chr1_1:26009707-26009726 | None:intergenic | 45.0% | |
| ! | GGATTTTACGGCGTGTGATT+AGG | + | chr1_1:26009767-26009786 | Msa0015870:intron | 45.0% |
| GTGTGATTAGGGACTGTTAG+AGG | + | chr1_1:26009779-26009798 | Msa0015870:intron | 45.0% | |
| GACTGTTAGAGGACACATGT+AGG | + | chr1_1:26009790-26009809 | Msa0015870:intron | 45.0% | |
| CAGAAAAGTAAGCAGCGGTT+AGG | + | chr1_1:26009944-26009963 | Msa0015870:intron | 45.0% | |
| TATACAAGTGATGAGGCCGT+TGG | + | chr1_1:26010043-26010062 | Msa0015870:CDS | 45.0% | |
| ATACAAGTGATGAGGCCGTT+GGG | + | chr1_1:26010044-26010063 | Msa0015870:CDS | 45.0% | |
| ACTAGGTTAGAACGTCCCAA+CGG | - | chr1_1:26010062-26010081 | None:intergenic | 45.0% | |
| TTGGGACGTTCTAACCTAGT+CGG | + | chr1_1:26010062-26010081 | Msa0015870:CDS | 45.0% | |
| AGAGGATGCATGGAAAGTTG+TGG | + | chr1_1:26010286-26010305 | Msa0015870:CDS | 45.0% | |
| CATGGAAAGTTGTGGTTGCT+AGG | + | chr1_1:26010294-26010313 | Msa0015870:CDS | 45.0% | |
| TAGGTCTCCAATGTTGCAAG+TGG | + | chr1_1:26010313-26010332 | Msa0015870:CDS | 45.0% | |
| AGTCTTCGCGGTGTAACGAA+AGG | + | chr1_1:26009597-26009616 | Msa0015870:CDS | 50.0% | |
| GTGTAACGAAAGGTTCCTGC+AGG | + | chr1_1:26009607-26009626 | Msa0015870:CDS | 50.0% | |
| AATGCGCGCCTATATAAGGG+TGG | - | chr1_1:26009731-26009750 | None:intergenic | 50.0% | |
| ACCCTTATATAGGCGCGCAT+TGG | + | chr1_1:26009730-26009749 | Msa0015870:intron | 50.0% | |
| CCCAATGCGCGCCTATATAA+GGG | - | chr1_1:26009734-26009753 | None:intergenic | 50.0% | |
| CCCTTATATAGGCGCGCATT+GGG | + | chr1_1:26009731-26009750 | Msa0015870:intron | 50.0% | |
| TCCCAATGCGCGCCTATATA+AGG | - | chr1_1:26009735-26009754 | None:intergenic | 50.0% | |
| !! | GTGCAGGTTGATAACCGACT+AGG | - | chr1_1:26010079-26010098 | None:intergenic | 50.0% |
| AGGATCACTGTGCGATCAAC+AGG | - | chr1_1:26010101-26010120 | None:intergenic | 50.0% | |
| CACAGTGATCCTTACGTGCA+AGG | + | chr1_1:26010109-26010128 | Msa0015870:CDS | 50.0% | |
| AGTCTTCGCGGTGTAACGAA+AGG | + | chr1_1:26009597-26009616 | Msa0015870:CDS | 50.0% | |
| GTGTAACGAAAGGTTCCTGC+AGG | + | chr1_1:26009607-26009626 | Msa0015870:CDS | 50.0% | |
| AATGCGCGCCTATATAAGGG+TGG | - | chr1_1:26009731-26009750 | None:intergenic | 50.0% | |
| ACCCTTATATAGGCGCGCAT+TGG | + | chr1_1:26009730-26009749 | Msa0015870:intron | 50.0% | |
| CCCAATGCGCGCCTATATAA+GGG | - | chr1_1:26009734-26009753 | None:intergenic | 50.0% | |
| CCCTTATATAGGCGCGCATT+GGG | + | chr1_1:26009731-26009750 | Msa0015870:intron | 50.0% | |
| TCCCAATGCGCGCCTATATA+AGG | - | chr1_1:26009735-26009754 | None:intergenic | 50.0% | |
| !! | GTGCAGGTTGATAACCGACT+AGG | - | chr1_1:26010079-26010098 | None:intergenic | 50.0% |
| AGGATCACTGTGCGATCAAC+AGG | - | chr1_1:26010101-26010120 | None:intergenic | 50.0% | |
| CACAGTGATCCTTACGTGCA+AGG | + | chr1_1:26010109-26010128 | Msa0015870:CDS | 50.0% | |
| ATGCTCCGGCATAACGCCAA+TGG | + | chr1_1:26009566-26009585 | Msa0015870:CDS | 55.0% | |
| CGAAGACTCATCGCCACCAT+TGG | - | chr1_1:26009585-26009604 | None:intergenic | 55.0% | |
| ! | ATGGTGGCGATGAGTCTTCG+CGG | + | chr1_1:26009585-26009604 | Msa0015870:CDS | 55.0% |
| GTGGCATTGCTTCACCCTCA+AGG | - | chr1_1:26009712-26009731 | None:intergenic | 55.0% | |
| !! | CGTGGAGGTGTTCTCGTATG+TGG | + | chr1_1:26009823-26009842 | Msa0015870:intron | 55.0% |
| ACTGTGCGATCAACAGGTGC+AGG | - | chr1_1:26010095-26010114 | None:intergenic | 55.0% | |
| ATGCTCCGGCATAACGCCAA+TGG | + | chr1_1:26009566-26009585 | Msa0015870:CDS | 55.0% | |
| CGAAGACTCATCGCCACCAT+TGG | - | chr1_1:26009585-26009604 | None:intergenic | 55.0% | |
| ! | ATGGTGGCGATGAGTCTTCG+CGG | + | chr1_1:26009585-26009604 | Msa0015870:CDS | 55.0% |
| GTGGCATTGCTTCACCCTCA+AGG | - | chr1_1:26009712-26009731 | None:intergenic | 55.0% | |
| !! | CGTGGAGGTGTTCTCGTATG+TGG | + | chr1_1:26009823-26009842 | Msa0015870:intron | 55.0% |
| ACTGTGCGATCAACAGGTGC+AGG | - | chr1_1:26010095-26010114 | None:intergenic | 55.0% | |
| TGGATGAGAGGCAACGGTGG+CGG | + | chr1_1:26009540-26009559 | Msa0015870:CDS | 60.0% | |
| !! | AACGGTGGCGGAAGATGCTC+CGG | + | chr1_1:26009552-26009571 | Msa0015870:CDS | 60.0% |
| CTCCGGCATAACGCCAATGG+TGG | + | chr1_1:26009569-26009588 | Msa0015870:CDS | 60.0% | |
| CGCCACCATTGGCGTTATGC+CGG | - | chr1_1:26009574-26009593 | None:intergenic | 60.0% | |
| ! | TGGAGTGCTAACGTGCCTGC+AGG | - | chr1_1:26009625-26009644 | None:intergenic | 60.0% |
| CATGTAGGGTGATCCTCGCG+TGG | + | chr1_1:26009805-26009824 | Msa0015870:intron | 60.0% | |
| TACGAGAACACCTCCACGCG+AGG | - | chr1_1:26009821-26009840 | None:intergenic | 60.0% | |
| TGGATGAGAGGCAACGGTGG+CGG | + | chr1_1:26009540-26009559 | Msa0015870:CDS | 60.0% | |
| !! | AACGGTGGCGGAAGATGCTC+CGG | + | chr1_1:26009552-26009571 | Msa0015870:CDS | 60.0% |
| CTCCGGCATAACGCCAATGG+TGG | + | chr1_1:26009569-26009588 | Msa0015870:CDS | 60.0% | |
| CGCCACCATTGGCGTTATGC+CGG | - | chr1_1:26009574-26009593 | None:intergenic | 60.0% | |
| ! | TGGAGTGCTAACGTGCCTGC+AGG | - | chr1_1:26009625-26009644 | None:intergenic | 60.0% |
| CATGTAGGGTGATCCTCGCG+TGG | + | chr1_1:26009805-26009824 | Msa0015870:intron | 60.0% | |
| TACGAGAACACCTCCACGCG+AGG | - | chr1_1:26009821-26009840 | None:intergenic | 60.0% | |
| GTAGGGTGATCCTCGCGTGG+AGG | + | chr1_1:26009808-26009827 | Msa0015870:intron | 65.0% | |
| GTAGGGTGATCCTCGCGTGG+AGG | + | chr1_1:26009808-26009827 | Msa0015870:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26009539 | 26010439 | 26009539 | ID=Msa0015870;Name=Msa0015870 |
| chr1_1 | mRNA | 26009539 | 26010439 | 26009539 | ID=Msa0015870-mRNA-1;Parent=Msa0015870;Name=Msa0015870-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.5|1|1|2|0|162 |
| chr1_1 | exon | 26009539 | 26009628 | 26009539 | ID=Msa0015870-mRNA-1:exon:8888;Parent=Msa0015870-mRNA-1 |
| chr1_1 | exon | 26010041 | 26010439 | 26010041 | ID=Msa0015870-mRNA-1:exon:8889;Parent=Msa0015870-mRNA-1 |
| chr1_1 | CDS | 26009539 | 26009628 | 26009539 | ID=Msa0015870-mRNA-1:cds;Parent=Msa0015870-mRNA-1 |
| chr1_1 | CDS | 26010041 | 26010439 | 26010041 | ID=Msa0015870-mRNA-1:cds;Parent=Msa0015870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
