AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017480 MtrunA17_Chr1g0168851 96.407 835 27 2 1 834 1 833 0.0 1668
Msa0017480 MtrunA17_Chr2g0286301 28.415 183 117 3 564 746 74 242 8.29e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017480 AT4G13550.2 56.198 847 339 10 2 834 1 829 0.0 922
Msa0017480 AT4G13550.3 55.986 852 342 11 2 839 1 833 0.0 920
Msa0017480 AT4G13550.1 53.601 847 329 10 2 834 1 797 0.0 860
Msa0017480 AT5G18640.5 33.766 154 85 4 590 741 100 238 8.29e-18 85.5
Msa0017480 AT5G18640.1 33.766 154 85 4 590 741 100 238 1.38e-17 85.9
Msa0017480 AT5G18640.3 33.766 154 85 4 590 741 100 238 1.38e-17 85.9
Msa0017480 AT5G18640.4 34.194 155 83 5 590 741 112 250 2.17e-17 85.5
Msa0017480 AT5G18640.2 34.194 155 83 5 590 741 112 250 2.17e-17 85.5
Msa0017480 AT5G18630.3 28.877 187 110 4 560 741 70 238 1.41e-15 78.6
Msa0017480 AT5G18630.2 31.847 157 84 4 590 741 100 238 2.40e-15 79.3
Msa0017480 AT5G18630.1 31.847 157 84 4 590 741 101 239 2.51e-15 79.0
Msa0017480 AT2G30550.2 30.233 301 138 16 559 798 191 480 4.83e-14 76.3
Msa0017480 AT2G30550.1 33.333 219 109 12 551 743 182 389 2.94e-13 73.6
Msa0017480 AT1G30370.1 32.558 172 92 6 586 744 235 395 2.05e-12 71.2

Find 196 sgRNAs with CRISPR-Local

Find 1053 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGGAAAATAAAGATATTT+TGG 0.112258 1_1:-29057433 Msa0017480:intron
AAATCTCCACCTATCCTTTC+AGG 0.153955 1_1:+29063562 None:intergenic
ACGCCTTTCATCTTTCATTT+TGG 0.161400 1_1:+29065537 None:intergenic
TCCGATATTTCTGAGCTTTC+AGG 0.174629 1_1:+29065694 None:intergenic
AACCTTGCTGTTATTCTTGC+TGG 0.218001 1_1:-29070932 Msa0017480:CDS
ACCTACAATACCCCGGTTAA+TGG 0.230357 1_1:-29059011 Msa0017480:CDS
CTGGAGTTCCTAAACAAAAT+TGG 0.233638 1_1:-29065772 Msa0017480:CDS
AAAGATAGAAACCGAAATTT+TGG 0.239191 1_1:+29071088 None:intergenic
AAATGGCATATTTATGTTAC+TGG 0.266430 1_1:-29062618 Msa0017480:CDS
AAGAAAGTAGAAGTAGAAAA+AGG 0.271298 1_1:+29071219 None:intergenic
TGGTGGCAATTAGTGTAATT+TGG 0.274286 1_1:+29071278 None:intergenic
TTCATTAGAAGCTTCATTAG+AGG 0.291847 1_1:+29065987 None:intergenic
AAGTCTCCTACCCCAGAAAA+TGG 0.303438 1_1:-29065439 Msa0017480:CDS
CAGGTTCACAGTGGCTTTCT+CGG 0.308374 1_1:-29063427 Msa0017480:CDS
AGAACTTTCAGGTTGCAATT+TGG 0.310411 1_1:-29065116 Msa0017480:intron
CGAATGCATATTCTACAAAT+TGG 0.312700 1_1:+29066121 None:intergenic
CAGGAAATGGTGGTTGGTTC+TGG 0.318185 1_1:+29071379 None:intergenic
TTATGTTACTGGTCATAGTT+TGG 0.318254 1_1:-29062607 Msa0017480:CDS
AATTGAGGGCGCGTGGAGTT+TGG 0.323887 1_1:+29071145 None:intergenic
GGGGAATGCAGTCGTTGATT+TGG 0.326384 1_1:-29067012 Msa0017480:CDS
TTAAAGAACTTTACATGTAT+TGG 0.337568 1_1:-29055293 Msa0017480:CDS
CATGACAATAACCCATTAAC+CGG 0.341967 1_1:+29058999 None:intergenic
TCCTTCGGTAGAATCTTCTT+TGG 0.346239 1_1:+29065495 None:intergenic
TGTGACAGTGAAACTGAAAA+TGG 0.346310 1_1:-29065937 Msa0017480:CDS
GTTACGAAGGTGATGTTCTT+GGG 0.347906 1_1:-29057404 Msa0017480:CDS
GAAGATATTTATATTGAATC+TGG 0.349953 1_1:-29065727 Msa0017480:CDS
GGTTGGTTCTGGAATTTGTT+CGG 0.352559 1_1:+29071390 None:intergenic
TGGGTAGTGGTGGAGAGGTT+TGG 0.353635 1_1:-29066724 Msa0017480:CDS
ATCTGTTGTTCGTCGAAAAC+CGG 0.363603 1_1:-29071013 Msa0017480:CDS
GTTGGTTCTGGAATTTGTTC+GGG 0.363724 1_1:+29071391 None:intergenic
AAATATGATATTGAAAGCTC+TGG 0.368892 1_1:-29066042 Msa0017480:CDS
CCCATTAACCGGGGTATTGT+AGG 0.371130 1_1:+29059010 None:intergenic
TATGTTACTGGTCATAGTTT+GGG 0.373760 1_1:-29062606 Msa0017480:CDS
CTGATTCTTCCGTTGAATCT+TGG 0.374350 1_1:+29071064 None:intergenic
CCTACAATACCCCGGTTAAT+GGG 0.375088 1_1:-29059010 Msa0017480:CDS
TGGATCCATGGCGGGGAAGC+TGG 0.375629 1_1:+29068794 None:intergenic
CCATCCCACTTTAATTTCTC+AGG 0.375798 1_1:+29065796 None:intergenic
TCTGCACTCAGAAAGGTTAC+TGG 0.380475 1_1:-29066165 Msa0017480:CDS
GTCATTTCCCTTACAAGTTA+CGG 0.383714 1_1:+29055367 None:intergenic
GGTTACGAAGGTGATGTTCT+TGG 0.384990 1_1:-29057405 Msa0017480:CDS
GGGAAATCAAATAATAATAC+TGG 0.388233 1_1:-29066021 Msa0017480:CDS
CTGCTAAAAGCAATATCAAA+TGG 0.388724 1_1:-29068541 Msa0017480:CDS
GCCTGAAAGCTCAGAAATAT+CGG 0.388795 1_1:-29065695 Msa0017480:CDS
AACTGAAAATGGACACGCTT+TGG 0.389290 1_1:-29065926 Msa0017480:CDS
TTTGTTCGGGTTTATGTCAA+TGG 0.399583 1_1:+29071404 None:intergenic
ATTCTACAAATTGGCTGACT+TGG 0.407387 1_1:+29066130 None:intergenic
TGCATTTCGCGGAACAGAAC+AGG 0.408862 1_1:-29065064 Msa0017480:intron
TCTCTGATTCGACTTGCAAT+TGG 0.411515 1_1:-29063373 Msa0017480:CDS
AACTCAGACTTGATGAAACT+TGG 0.412460 1_1:+29065313 None:intergenic
ACTCCCGCAGCAAGAAATAA+AGG 0.417461 1_1:+29058968 None:intergenic
GCTTCCCCGCCATGGATCCA+TGG 0.420753 1_1:-29068791 Msa0017480:CDS
TGTAATTTGGAGGAAAAGAA+TGG 0.420877 1_1:+29071291 None:intergenic
TGCTAAAAGCAATATCAAAT+GGG 0.421313 1_1:-29068540 Msa0017480:CDS
TAGTGGTGGAGAGGTTTGGC+TGG 0.427191 1_1:-29066720 Msa0017480:CDS
CAATTTGTAGAATATGCATT+CGG 0.427224 1_1:-29066120 Msa0017480:CDS
TAACATGTTTCAGGAAAACT+TGG 0.427724 1_1:-29069274 Msa0017480:intron
TAACATAAATATGCCATTTG+TGG 0.431363 1_1:+29062622 None:intergenic
ACTGGTGGAGTTGGAAGGAA+TGG 0.433714 1_1:-29066744 Msa0017480:CDS
CCCAGAAAATGGATCATTGT+TGG 0.435596 1_1:-29065428 Msa0017480:CDS
TATACATTAGGTTGCAGCTT+GGG 0.440620 1_1:-29067066 Msa0017480:intron
AGGAGATACGCATGAAATAC+TGG 0.441730 1_1:-29066762 Msa0017480:CDS
TCATAGTTTGGGTGGTGCCT+TGG 0.443472 1_1:-29062595 Msa0017480:CDS
CATTCCCCATGCGTTTGTGA+GGG 0.448852 1_1:+29067027 None:intergenic
TATCCAGATGAAGGGTGAAA+TGG 0.451496 1_1:-29056873 Msa0017480:intron
AATGTCACTGCCTACTCCTT+CGG 0.455354 1_1:+29065480 None:intergenic
GTTGCCCATCATAAATTTCA+CGG 0.459115 1_1:+29068841 None:intergenic
CTGAAAGTGCCATGGAGGCT+TGG 0.460334 1_1:-29065363 Msa0017480:CDS
ATATCGGACAATAAAACAAC+TGG 0.465290 1_1:-29065679 Msa0017480:CDS
TTCATCATCAATTTCTTCAA+AGG 0.468717 1_1:+29066245 None:intergenic
AAGTGCTTACATGCAGCATA+TGG 0.481981 1_1:-29056792 Msa0017480:CDS
AACTCGTTGACTATGACATC+TGG 0.490407 1_1:+29057372 None:intergenic
TCCGTATGTGGTCCTACAGA+TGG 0.493689 1_1:-29068573 Msa0017480:CDS
CAACCTTTATTTCTTGCTGC+GGG 0.494358 1_1:-29058971 Msa0017480:CDS
TGCGTTTGTGAGGGGTTACA+AGG 0.495980 1_1:+29067036 None:intergenic
GTGGAAAATTATAGTGAGGC+GGG 0.497462 1_1:+29071110 None:intergenic
GCATGAAATACTGGTGGAGT+TGG 0.497752 1_1:-29066753 Msa0017480:CDS
ATGCAGTCGTTGATTTGGAA+TGG 0.498501 1_1:-29067007 Msa0017480:CDS
GAAATTAAAGTGGGATGGAC+TGG 0.499170 1_1:-29065791 Msa0017480:CDS
TATGTACAGGAAATGGTGGT+TGG 0.501015 1_1:+29071373 None:intergenic
GAGTTGGAAGGAATGGGTAG+TGG 0.504826 1_1:-29066737 Msa0017480:CDS
GAAGGTTTATGTACAGGAAA+TGG 0.507132 1_1:+29071366 None:intergenic
CCAACCCATGGATCCATGGC+GGG 0.507394 1_1:+29068786 None:intergenic
GGCGTGATTCTGCACGAAGA+AGG 0.508396 1_1:-29065095 Msa0017480:CDS
CTTCCCCGCCATGGATCCAT+GGG 0.509676 1_1:-29068790 Msa0017480:intron
CTCAGAAAGATAGATTGTCT+TGG 0.515701 1_1:+29069224 None:intergenic
TCATGCTTCTTAACCTGTAG+AGG 0.516054 1_1:+29068028 None:intergenic
TGGTGGAGAGGTTTGGCTGG+AGG 0.518588 1_1:-29066717 Msa0017480:intron
AAGAGCAAGCAAGGTAGCCA+AGG 0.518841 1_1:+29062578 None:intergenic
TCGGTGCATATGATTCAGTA+AGG 0.521878 1_1:-29063408 Msa0017480:CDS
CATTATCAGTATCAGACATC+CGG 0.523680 1_1:+29066067 None:intergenic
TTCGGGTTTATGTCAATGGA+CGG 0.527159 1_1:+29071408 None:intergenic
ACAGCAAGGTTGATATCAAA+CGG 0.527792 1_1:+29070944 None:intergenic
ATTCTGAGTTCATCCACAAA+TGG 0.529548 1_1:-29062635 Msa0017480:CDS
GATCTAATGCTTGTTCCAGC+CGG 0.532979 1_1:-29064931 Msa0017480:CDS
GGTTTATGTACAGGAAATGG+TGG 0.535031 1_1:+29071369 None:intergenic
CTGGTGGAGTTGGAAGGAAT+GGG 0.535044 1_1:-29066743 Msa0017480:CDS
AGGATCCAGCTTCCCCGCCA+TGG 0.535297 1_1:-29068799 Msa0017480:CDS
ATCTAATGCTTGTTCCAGCC+GGG 0.535771 1_1:-29064930 Msa0017480:intron
AGGCGTGAAGTCGATGCTGC+TGG 0.536960 1_1:-29069249 Msa0017480:CDS
TTTGGTGGAAAATTATAGTG+AGG 0.537267 1_1:+29071106 None:intergenic
TGCAGAAAGTGAAAGATAGC+TGG 0.537699 1_1:-29059060 Msa0017480:intron
TTTACGTGTACGGGTGTGGA+AGG 0.538859 1_1:+29071348 None:intergenic
GCATTCCCCATGCGTTTGTG+AGG 0.540231 1_1:+29067026 None:intergenic
AGAAATGAATGTTACCCGGC+TGG 0.540515 1_1:+29064916 None:intergenic
TGAAAGTTCAAGAGCAAGCA+AGG 0.541093 1_1:+29062569 None:intergenic
GGGAAAGTGCGAGAAAATTG+AGG 0.543885 1_1:+29071130 None:intergenic
GGTGTGGAAGGTTTATGTAC+AGG 0.545240 1_1:+29071360 None:intergenic
GCTGGCGAATTGTGAATCAC+AGG 0.546360 1_1:-29059042 Msa0017480:CDS
GGAAAGTGCGAGAAAATTGA+GGG 0.547750 1_1:+29071131 None:intergenic
TGAAGACTGAATTGCAGCAA+TGG 0.547909 1_1:+29065648 None:intergenic
TTCAACTGCTGAAAGTGCCA+TGG 0.548621 1_1:-29065371 Msa0017480:CDS
CTTTACATGTATTGGCAGCA+AGG 0.548916 1_1:-29055285 Msa0017480:CDS
GTAATTTGGAGGAAAAGAAT+GGG 0.551412 1_1:+29071292 None:intergenic
TGGCAATTAGTGTAATTTGG+AGG 0.553432 1_1:+29071281 None:intergenic
AATATGATATTGAAAGCTCT+GGG 0.554154 1_1:-29066041 Msa0017480:CDS
CCGTATGTGGTCCTACAGAT+GGG 0.554287 1_1:-29068572 Msa0017480:CDS
CCCATCTGTAGGACCACATA+CGG 0.559591 1_1:+29068572 None:intergenic
TTGGAAGGAATGGGTAGTGG+TGG 0.560825 1_1:-29066734 Msa0017480:CDS
AGGAATGGGTAGTGGTGGAG+AGG 0.561118 1_1:-29066729 Msa0017480:CDS
TGTAACCCCTCACAAACGCA+TGG 0.561799 1_1:-29067033 Msa0017480:CDS
CTAGTTAGTGTATTCAAACT+CGG 0.562368 1_1:+29071444 None:intergenic
TAATGCATCCACTGATACAC+AGG 0.563445 1_1:-29065269 Msa0017480:intron
GTAACCCCTCACAAACGCAT+GGG 0.565128 1_1:-29067032 Msa0017480:CDS
CTATTACATCACATTACTAG+AGG 0.566256 1_1:-29056762 Msa0017480:intron
AAAAGAGCCAACATGGAATG+AGG 0.569478 1_1:-29068086 Msa0017480:CDS
ACAATGCTGTCCACTTCACT+AGG 0.570268 1_1:-29065340 Msa0017480:CDS
GCAGGACAAAAGAGCCAACA+TGG 0.570719 1_1:-29068093 Msa0017480:intron
ATTTGCAGAGGTTTACAATG+AGG 0.573302 1_1:-29060889 Msa0017480:intron
ACAACCAACCCATGGATCCA+TGG 0.576145 1_1:+29068782 None:intergenic
CAGCATTGTCCAAGCCTCCA+TGG 0.576172 1_1:+29065354 None:intergenic
TTGATGTGAGAAGTGGAAGT+GGG 0.577836 1_1:+29071324 None:intergenic
CCTGAGAAATTAAAGTGGGA+TGG 0.577884 1_1:-29065796 Msa0017480:CDS
AATTTGTAGAATATGCATTC+GGG 0.578887 1_1:-29066119 Msa0017480:CDS
TTTCCAAAATGAAAGATGAA+AGG 0.579507 1_1:-29065540 Msa0017480:CDS
GAAGATTCTACCGAAGGAGT+AGG 0.580645 1_1:-29065490 Msa0017480:CDS
AGGTTAGTGATTGCATTTCG+CGG 0.580731 1_1:-29065075 Msa0017480:CDS
GAAATACTGGTGGAGTTGGA+AGG 0.584587 1_1:-29066749 Msa0017480:CDS
CACTTCCATCTCTGATTGAG+CGG 0.584595 1_1:+29056810 None:intergenic
GTATACATTAGGTTGCAGCT+TGG 0.585846 1_1:-29067067 Msa0017480:intron
ACCAAAGAAGATTCTACCGA+AGG 0.588304 1_1:-29065496 Msa0017480:CDS
ATATTCCGCTCAATCAGAGA+TGG 0.589383 1_1:-29056815 Msa0017480:CDS
AGGTGGAGATTTCAAGCAAG+AGG 0.590239 1_1:-29063551 Msa0017480:CDS
TGGTAACAAAAGATTTGCAG+AGG 0.591510 1_1:-29060901 Msa0017480:CDS
GTTACTGGTCATAGTTTGGG+TGG 0.592963 1_1:-29062603 Msa0017480:CDS
ACAAAACACCTGTGTATCAG+TGG 0.594569 1_1:+29065261 None:intergenic
AGAAAATGGATCATTGTTGG+AGG 0.594821 1_1:-29065425 Msa0017480:CDS
GTCGGCGATGAAACCTCTAC+AGG 0.596911 1_1:-29068041 Msa0017480:intron
CTGTTCCTGAGAAATTAAAG+TGG 0.597016 1_1:-29065801 Msa0017480:CDS
AAATGATTTGATGTGAGAAG+TGG 0.598138 1_1:+29071317 None:intergenic
GCTAAAAGCAATATCAAATG+GGG 0.600045 1_1:-29068539 Msa0017480:CDS
GTGAACTCCTCATTCCATGT+TGG 0.601907 1_1:+29068079 None:intergenic
GACTGAATTGCAGCAATGGA+AGG 0.602286 1_1:+29065652 None:intergenic
ATTCCCCATGCGTTTGTGAG+GGG 0.602441 1_1:+29067028 None:intergenic
GATTTGGAATGGCTTTGTGA+TGG 0.603127 1_1:-29066996 Msa0017480:intron
CTGAATCCTGAAAGGATAGG+TGG 0.603273 1_1:-29063568 Msa0017480:CDS
GGGAACAAGTGATCCGTATG+TGG 0.604184 1_1:-29068585 Msa0017480:CDS
AGCATCACCACAAGCTAGTG+AGG 0.604248 1_1:-29065902 Msa0017480:CDS
AACTCTTCCTCACTAGCTTG+TGG 0.607610 1_1:+29065895 None:intergenic
GCGAGAAAATTGAGGGCGCG+TGG 0.608201 1_1:+29071138 None:intergenic
ATGTGTCACACGTGTGTGAG+TGG 0.608393 1_1:+29071196 None:intergenic
TCAACCTTTATTTCTTGCTG+CGG 0.608618 1_1:-29058972 Msa0017480:CDS
CTATCTTTACCAAGATTCAA+CGG 0.610314 1_1:-29071073 Msa0017480:CDS
AATTCAGTCTTCACTTCCAG+AGG 0.612033 1_1:-29065638 Msa0017480:CDS
TCCATAGGCTGAATCCTGAA+AGG 0.612958 1_1:-29063576 Msa0017480:intron
GGTGGAAAATTATAGTGAGG+CGG 0.615071 1_1:+29071109 None:intergenic
ATGACAATAACCCATTAACC+GGG 0.615546 1_1:+29059000 None:intergenic
CTTTGATCTATCCAGATGAA+GGG 0.618511 1_1:-29056881 Msa0017480:intron
TTTGATGTGAGAAGTGGAAG+TGG 0.620736 1_1:+29071323 None:intergenic
CATATGATTCAGTAAGGACA+AGG 0.620989 1_1:-29063402 Msa0017480:CDS
TGCTTACATGCAGCATATGG+AGG 0.621537 1_1:-29056789 Msa0017480:CDS
TGTTTCAGGAAAACTTGGGT+AGG 0.622383 1_1:-29069269 Msa0017480:intron
AACTGCTGAAAGTGCCATGG+AGG 0.622432 1_1:-29065368 Msa0017480:CDS
TGTTCCTGAGAAATTAAAGT+GGG 0.623964 1_1:-29065800 Msa0017480:CDS
TTGTAAGGGAAATGACTACT+CGG 0.624279 1_1:-29055360 Msa0017480:CDS
CAACCCATGGATCCATGGCG+GGG 0.628494 1_1:+29068787 None:intergenic
CAGTCTGAGAACCCATCTGT+AGG 0.630166 1_1:+29068561 None:intergenic
TTACGAAGGTGATGTTCTTG+GGG 0.631176 1_1:-29057403 Msa0017480:CDS
CTGGCGAATTGTGAATCACA+GGG 0.633195 1_1:-29059041 Msa0017480:CDS
AAAGGCGTTCTTCTGAAGAG+AGG 0.635261 1_1:-29065522 Msa0017480:CDS
GCGTGGAGTTTGGAGAGTAA+CGG 0.646182 1_1:+29071155 None:intergenic
AACATGTTTCAGGAAAACTT+GGG 0.647967 1_1:-29069273 Msa0017480:intron
AGGCTGAATCCTGAAAGGAT+AGG 0.652181 1_1:-29063571 Msa0017480:CDS
TTCTAATGAACAAAGAAACA+TGG 0.652213 1_1:-29065974 Msa0017480:CDS
AGATCTTTGCAGGTTCACAG+TGG 0.653410 1_1:-29063436 Msa0017480:intron
ACTTGGATGACCTAGTGAAG+TGG 0.661149 1_1:+29065330 None:intergenic
TAACCCCTCACAAACGCATG+GGG 0.661460 1_1:-29067031 Msa0017480:CDS
AGGGAAATGACTACTCGGCA+CGG 0.664225 1_1:-29055355 Msa0017480:CDS
GTTGACTATGACATCTGGTG+TGG 0.664313 1_1:+29057377 None:intergenic
GCAATGGAAGGACTTAGTAA+CGG 0.676596 1_1:-29064953 Msa0017480:CDS
AACCAGCAAGAATAACAGCA+AGG 0.677243 1_1:+29070930 None:intergenic
CTAAAAGCAATATCAAATGG+GGG 0.678228 1_1:-29068538 Msa0017480:intron
ACCAACCCATGGATCCATGG+CGG 0.678787 1_1:+29068785 None:intergenic
AGATACGCATGAAATACTGG+TGG 0.687029 1_1:-29066759 Msa0017480:CDS
ATATCATACCTACAATACCC+CGG 0.723074 1_1:-29059018 Msa0017480:CDS
TGACAATAACCCATTAACCG+GGG 0.739534 1_1:+29059001 None:intergenic
GCAAGGTTGATATCAAACGG+AGG 0.753938 1_1:+29070947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAT+AGG - chr1_1:29056079-29056098 Msa0017480:intron 0.0%
!!! ATTTTTTAAAAAGATTGTTT+TGG - chr1_1:29056352-29056371 Msa0017480:intron 10.0%
!!! TTTTTTTGTTTTTCTATTTT+TGG - chr1_1:29056567-29056586 Msa0017480:intron 10.0%
!!! ATTATTAATTTATTTTTGAG+AGG - chr1_1:29056768-29056787 Msa0017480:CDS 10.0%
!!! AAGATAATTTCATTTTTTTT+CGG + chr1_1:29057255-29057274 None:intergenic 10.0%
!!! ATTAAGATAATTTCATTTTT+TGG + chr1_1:29057328-29057347 None:intergenic 10.0%
!!! GTAAAATAATTTTGAATTTT+AGG - chr1_1:29060417-29060436 Msa0017480:intron 10.0%
!!! CTTTTATTTAATTTACAATT+GGG + chr1_1:29062472-29062491 None:intergenic 10.0%
!!! ACTTTTATTTAATTTACAAT+TGG + chr1_1:29062473-29062492 None:intergenic 10.0%
!! TTATTTCATAATGTAAAAAT+AGG + chr1_1:29063819-29063838 None:intergenic 10.0%
!! TATATAGTATTATCTTATAT+AGG + chr1_1:29064279-29064298 None:intergenic 10.0%
!! TAATATAAAAAATGAACATT+CGG - chr1_1:29065271-29065290 Msa0017480:CDS 10.0%
!! TATTATATTAAAACTTACTA+AGG + chr1_1:29067766-29067785 None:intergenic 10.0%
!!! CCAAAAATTTAATTTAAAAA+AGG + chr1_1:29068065-29068084 None:intergenic 10.0%
!!! CCTTTTTTAAATTAAATTTT+TGG - chr1_1:29068062-29068081 Msa0017480:CDS 10.0%
!!! AAAATTCAAATTATTTTATG+AGG + chr1_1:29069030-29069049 None:intergenic 10.0%
!!! AAAAATATTTTTAGTTAAAC+AGG - chr1_1:29069517-29069536 Msa0017480:intron 10.0%
!! TTGAAAAATATTAGAATATA+AGG - chr1_1:29070251-29070270 Msa0017480:intron 10.0%
!!! TCAAATATTTTGAGTTTAAT+AGG - chr1_1:29055961-29055980 Msa0017480:intron 15.0%
!! TAAAAAACAACAGAAATAAA+AGG + chr1_1:29058081-29058100 None:intergenic 15.0%
!!! GAAATAAGAATGATTTTATT+CGG - chr1_1:29058429-29058448 Msa0017480:intron 15.0%
!!! ACATCTATAATTTTTATGTA+CGG + chr1_1:29058768-29058787 None:intergenic 15.0%
!! ACATAAAAATTATAGATGTA+TGG - chr1_1:29058769-29058788 Msa0017480:intron 15.0%
!! CATAAAAATTATAGATGTAT+GGG - chr1_1:29058770-29058789 Msa0017480:intron 15.0%
!! AAATGAAATAAAAAATCTGA+CGG - chr1_1:29059558-29059577 Msa0017480:intron 15.0%
!! AATGTTAAATTTCTAACAAT+TGG - chr1_1:29059605-29059624 Msa0017480:intron 15.0%
!! ATTAATTAATAAATTCTCCA+AGG - chr1_1:29060230-29060249 Msa0017480:intron 15.0%
!! TTAATTAATAAATTCTCCAA+GGG - chr1_1:29060231-29060250 Msa0017480:intron 15.0%
!!! ATTTATTTTAAAAAGGAATG+AGG - chr1_1:29062197-29062216 Msa0017480:intron 15.0%
!! TCAAAATCATAACTAATTTA+GGG - chr1_1:29063032-29063051 Msa0017480:intron 15.0%
!! GAAATACATATAATAAAGAA+AGG - chr1_1:29063616-29063635 Msa0017480:intron 15.0%
!!! ATTTTACATTATTTTTCTCA+TGG - chr1_1:29063841-29063860 Msa0017480:intron 15.0%
!!! TGTAATTATTTAAAATGCAT+AGG + chr1_1:29064787-29064806 None:intergenic 15.0%
!! ATACATATATTCAAAACAAT+GGG + chr1_1:29064921-29064940 None:intergenic 15.0%
!!! TCTTTTACTATGTATAATTT+TGG - chr1_1:29065761-29065780 Msa0017480:CDS 15.0%
!!! TTGTTTTTTATTTAAAACCA+AGG + chr1_1:29066230-29066249 None:intergenic 15.0%
!!! TTGGTTTTAAATAAAAAACA+AGG - chr1_1:29066229-29066248 Msa0017480:CDS 15.0%
!!! TGGTTTTAAATAAAAAACAA+GGG - chr1_1:29066230-29066249 Msa0017480:CDS 15.0%
!!! GTAAGTTTTAATATAATACT+CGG - chr1_1:29067768-29067787 Msa0017480:intron 15.0%
!!! AGAGTATACTTTTATATTTT+AGG + chr1_1:29067810-29067829 None:intergenic 15.0%
!!! TGAAAAAGATTTTCATATTT+TGG - chr1_1:29067920-29067939 Msa0017480:intron 15.0%
!!! TTTTCTATACAAGAAATTTA+GGG + chr1_1:29068182-29068201 None:intergenic 15.0%
!!! TTTTTCTATACAAGAAATTT+AGG + chr1_1:29068183-29068202 None:intergenic 15.0%
!! TTATCAAAAAAATAAACACT+TGG + chr1_1:29068434-29068453 None:intergenic 15.0%
!!! AAAAACTGACTTTTAAAAAA+AGG - chr1_1:29068453-29068472 Msa0017480:intron 15.0%
!!! AAAACTGACTTTTAAAAAAA+GGG - chr1_1:29068454-29068473 Msa0017480:intron 15.0%
!! TAATCAAAAAAATAAACACT+TGG + chr1_1:29068514-29068533 None:intergenic 15.0%
!!! AAAAACTGACTTTTAAAAAA+AGG - chr1_1:29068453-29068472 Msa0017480:intron 15.0%
!!! AAAACTGACTTTTAAAAAAA+GGG - chr1_1:29068454-29068473 Msa0017480:intron 15.0%
!!! AAGTAGTTTGTATAAAAAAA+AGG - chr1_1:29068817-29068836 Msa0017480:CDS 15.0%
!! TATAATCATATCACTAAAAT+AGG + chr1_1:29070622-29070641 None:intergenic 15.0%
!!! AAAATCTGAAGTAATTATAA+GGG + chr1_1:29070659-29070678 None:intergenic 15.0%
!!! ATAATTTTCCACCAAAATTT+CGG - chr1_1:29055598-29055617 Msa0017480:intron 20.0%
!! AATAATATGACGATTATGAT+TGG - chr1_1:29055918-29055937 Msa0017480:intron 20.0%
!! TCAAATAAAGTTGTTGTATT+TGG - chr1_1:29056162-29056181 Msa0017480:intron 20.0%
!!! ATTTGGTTAAAATTTTGAAC+CGG - chr1_1:29056179-29056198 Msa0017480:intron 20.0%
!!! AAACTATTTTTGAGATTTGA+TGG - chr1_1:29056257-29056276 Msa0017480:intron 20.0%
!! ATCTCTAATCATAGTTTAAT+TGG + chr1_1:29056453-29056472 None:intergenic 20.0%
!!! TTTTGTTTTTCTATTTTTGG+AGG - chr1_1:29056570-29056589 Msa0017480:intron 20.0%
!! AAAAAATACACGAGTATTTA+GGG + chr1_1:29056610-29056629 None:intergenic 20.0%
!! AAAAAAATACACGAGTATTT+AGG + chr1_1:29056611-29056630 None:intergenic 20.0%
!! GATTGAAATAAGGAAAAAAA+AGG - chr1_1:29056955-29056974 Msa0017480:intron 20.0%
!!! AAAAGGCTTAATTAACATTT+TGG - chr1_1:29056972-29056991 Msa0017480:intron 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr1_1:29057091-29057110 None:intergenic 20.0%
!! CTTTATGTTATTAGAGTTAA+GGG + chr1_1:29057030-29057049 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr1_1:29057091-29057110 Msa0017480:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr1_1:29057118-29057137 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr1_1:29057119-29057138 Msa0017480:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr1_1:29057120-29057139 Msa0017480:intron 20.0%
!!! GTTATTTATTGGTTACATTT+TGG + chr1_1:29057147-29057166 None:intergenic 20.0%
!! GTAACCAATAAATAACTTAA+AGG - chr1_1:29057151-29057170 Msa0017480:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr1_1:29057118-29057137 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr1_1:29057119-29057138 Msa0017480:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr1_1:29057120-29057139 Msa0017480:intron 20.0%
!! AAATTATCTTAATGTGACAT+TGG - chr1_1:29057335-29057354 Msa0017480:intron 20.0%
!! AATTATCTTAATGTGACATT+GGG - chr1_1:29057336-29057355 Msa0017480:intron 20.0%
!!! ATAATGGGAAGTAAAATAAA+AGG + chr1_1:29057404-29057423 None:intergenic 20.0%
!!! AGATTTTTTTGAATATATGC+AGG - chr1_1:29057825-29057844 Msa0017480:intron 20.0%
!!! GATTTTTTTGAATATATGCA+GGG - chr1_1:29057826-29057845 Msa0017480:intron 20.0%
!! CATAAATTTATTTACTGTAC+TGG - chr1_1:29057943-29057962 Msa0017480:intron 20.0%
!!! TTGTTTTTTACATTCATTGT+AGG - chr1_1:29058091-29058110 Msa0017480:intron 20.0%
!!! TGTTTTTTACATTCATTGTA+GGG - chr1_1:29058092-29058111 Msa0017480:intron 20.0%
!!! TTTTTACAGTTTGATTGTTA+TGG - chr1_1:29058305-29058324 Msa0017480:intron 20.0%
!!! ATATAAAATTATTTGATGGC+AGG - chr1_1:29058586-29058605 Msa0017480:intron 20.0%
!!! AGTTCACTTTTAATTTTAAG+CGG - chr1_1:29058634-29058653 Msa0017480:intron 20.0%
!!! TATAATTTTTATGTACGGAA+AGG + chr1_1:29058763-29058782 None:intergenic 20.0%
!!! ATATAACTATTTCTCTAATG+AGG + chr1_1:29059204-29059223 None:intergenic 20.0%
!! ATACTAAATGAATGATTACA+AGG + chr1_1:29059432-29059451 None:intergenic 20.0%
!!! AATAATTATCAAGACCTTTT+CGG + chr1_1:29060213-29060232 None:intergenic 20.0%
!!! AAATTGATGATGAAAAAAAG+TGG - chr1_1:29060461-29060480 Msa0017480:intron 20.0%
!!! TTTAAAAAGTCTGAAACAAA+AGG + chr1_1:29060496-29060515 None:intergenic 20.0%
!! GAAGATATTTATATTGAATC+TGG - chr1_1:29060970-29060989 Msa0017480:intron 20.0%
!! CTAATTTAACAGAAATTACA+TGG + chr1_1:29062034-29062053 None:intergenic 20.0%
!!! GAAGGGAATTTATTTTAAAA+AGG - chr1_1:29062190-29062209 Msa0017480:intron 20.0%
!! TTATCGTATCATTAATTGTA+GGG + chr1_1:29062425-29062444 None:intergenic 20.0%
!! AAACAAATTATTAATGCATG+TGG - chr1_1:29062660-29062679 Msa0017480:intron 20.0%
!! GGTCTAATAATTAAAAAAGT+GGG - chr1_1:29062731-29062750 Msa0017480:intron 20.0%
!!! CAAAATACTTTCTAGTTTTA+AGG + chr1_1:29062776-29062795 None:intergenic 20.0%
!!! CTTAAAACTAGAAAGTATTT+TGG - chr1_1:29062774-29062793 Msa0017480:intron 20.0%
!! TTCAAAAAAGAATTCTCTAT+GGG + chr1_1:29062866-29062885 None:intergenic 20.0%
!! CTCAAAATCATAACTAATTT+AGG - chr1_1:29063031-29063050 Msa0017480:intron 20.0%
!!! AATAAACGAAGAAATTTTTG+TGG + chr1_1:29063231-29063250 None:intergenic 20.0%
!! AAAATTTCTTCGTTTATTGA+TGG - chr1_1:29063233-29063252 Msa0017480:intron 20.0%
!!! ATGTCTTAGAATATTGTTTT+CGG - chr1_1:29063409-29063428 Msa0017480:CDS 20.0%
!!! TAAAACTAAAAGCATAAACT+TGG + chr1_1:29063458-29063477 None:intergenic 20.0%
!!! ATGCTTTTAGTTTTAATCAT+TGG - chr1_1:29063463-29063482 Msa0017480:intron 20.0%
!! TGAATATGATCAATAATCAT+TGG + chr1_1:29063875-29063894 None:intergenic 20.0%
!! GATTATTGATCATATTCATT+TGG - chr1_1:29063877-29063896 Msa0017480:intron 20.0%
!! TATTATCTTATATAGGATCT+TGG + chr1_1:29064272-29064291 None:intergenic 20.0%
!!! TGTTTAAATAATTTTCCTAG+AGG + chr1_1:29064704-29064723 None:intergenic 20.0%
!!! ATTTAAAATGCATAGGTAAA+AGG + chr1_1:29064780-29064799 None:intergenic 20.0%
!! CATACATATATTCAAAACAA+TGG + chr1_1:29064922-29064941 None:intergenic 20.0%
!!! CATTGTTTTGAATATATGTA+TGG - chr1_1:29064920-29064939 Msa0017480:intron 20.0%
!!! GGATCTGATAATAAATTTTT+GGG - chr1_1:29065092-29065111 Msa0017480:CDS 20.0%
!!! GATCTGATAATAAATTTTTG+GGG - chr1_1:29065093-29065112 Msa0017480:CDS 20.0%
!!! TTTAACTTTTTCAAGCAAAA+AGG + chr1_1:29065451-29065470 None:intergenic 20.0%
!!! TTTATTTAACTTCTCTGTTT+TGG - chr1_1:29065501-29065520 Msa0017480:CDS 20.0%
!! ATGAACAATGAATATATAGT+TGG + chr1_1:29065662-29065681 None:intergenic 20.0%
!! TTTACCATGTATATATCATA+TGG + chr1_1:29065686-29065705 None:intergenic 20.0%
!! GAAACTGAAGTTATTAATTA+GGG + chr1_1:29066269-29066288 None:intergenic 20.0%
!! AGAAACTGAAGTTATTAATT+AGG + chr1_1:29066270-29066289 None:intergenic 20.0%
!! CAAAAAGTTATATGAAATAG+CGG - chr1_1:29066466-29066485 Msa0017480:intron 20.0%
!! AAATGTCTTATGATTCATTA+TGG - chr1_1:29066580-29066599 Msa0017480:intron 20.0%
!! AAAAAAATTGAGACAACTTA+TGG + chr1_1:29066921-29066940 None:intergenic 20.0%
!! TGCTTTATATTATGGAAAAA+GGG + chr1_1:29066948-29066967 None:intergenic 20.0%
!! AAATGTTATAAACACTACAA+AGG + chr1_1:29067134-29067153 None:intergenic 20.0%
!! TGCTAAAACATTCATTTATT+TGG - chr1_1:29067322-29067341 Msa0017480:intron 20.0%
!! GCTAAAACATTCATTTATTT+GGG - chr1_1:29067323-29067342 Msa0017480:intron 20.0%
!!! TATAAAGAATCTTGTTTTTC+CGG + chr1_1:29067422-29067441 None:intergenic 20.0%
!!! AAATATAAAAGTATACTCTG+CGG - chr1_1:29067811-29067830 Msa0017480:intron 20.0%
!! CTCATTAAAATTATCAAACA+AGG + chr1_1:29067861-29067880 None:intergenic 20.0%
!!! CTTGTTTGATAATTTTAATG+AGG - chr1_1:29067859-29067878 Msa0017480:intron 20.0%
!!! ATTTTCATATTTTGGCAAAA+AGG - chr1_1:29067928-29067947 Msa0017480:intron 20.0%
!! TTGTCAAATTAGTCATTAAA+TGG - chr1_1:29068088-29068107 Msa0017480:CDS 20.0%
!! GAAAAAAAAATCAGTCATTA+AGG - chr1_1:29068197-29068216 Msa0017480:intron 20.0%
!! TTTGATATGCTAAAAAATGA+AGG - chr1_1:29068224-29068243 Msa0017480:intron 20.0%
!!! TTGATTTGTAAAATTGTTTC+TGG - chr1_1:29068278-29068297 Msa0017480:intron 20.0%
!!! TGATTTGTAAAATTGTTTCT+GGG - chr1_1:29068279-29068298 Msa0017480:intron 20.0%
!!! AGAAATCAAATTATTTTACG+AGG + chr1_1:29068723-29068742 None:intergenic 20.0%
!! TAAATCAAAGAAGGAAATTT+CGG + chr1_1:29068990-29069009 None:intergenic 20.0%
!!! TCAAATTATTTTATGAGGAA+AGG + chr1_1:29069025-29069044 None:intergenic 20.0%
!!! AAAATATCTTTATTTTCCTG+TGG + chr1_1:29069265-29069284 None:intergenic 20.0%
!!! ACAGGAAAATAAAGATATTT+TGG - chr1_1:29069264-29069283 Msa0017480:CDS 20.0%
!!! CAGGAAAATAAAGATATTTT+GGG - chr1_1:29069265-29069284 Msa0017480:intron 20.0%
!! AGATATTGACAAAAAAATTG+TGG - chr1_1:29069494-29069513 Msa0017480:intron 20.0%
!!! TCATTAAAACTACTTTTTCA+GGG + chr1_1:29069591-29069610 None:intergenic 20.0%
!!! ATCATTAAAACTACTTTTTC+AGG + chr1_1:29069592-29069611 None:intergenic 20.0%
!! AATGATATTAGTGTATCATT+TGG - chr1_1:29069620-29069639 Msa0017480:intron 20.0%
!! AAGCATTAAAAATAGAAATC+AGG + chr1_1:29069730-29069749 None:intergenic 20.0%
!! CTGTTATTATCATTCTTATT+TGG - chr1_1:29070016-29070035 Msa0017480:intron 20.0%
!!! TGTTCAATTTTTTCATAAAG+AGG - chr1_1:29070112-29070131 Msa0017480:intron 20.0%
!! ATGAAATATAAGAAGCAAAA+AGG - chr1_1:29070163-29070182 Msa0017480:intron 20.0%
!! TGAAATATAAGAAGCAAAAA+GGG - chr1_1:29070164-29070183 Msa0017480:intron 20.0%
!! AGACTATATCATAAACAAAT+AGG + chr1_1:29070378-29070397 None:intergenic 20.0%
!!! AAATCTGAAGTAATTATAAG+GGG + chr1_1:29070658-29070677 None:intergenic 20.0%
!!! CAAAATCTGAAGTAATTATA+AGG + chr1_1:29070660-29070679 None:intergenic 20.0%
!!! ATTTTTTGTATGATCAAAAC+AGG - chr1_1:29070943-29070962 Msa0017480:CDS 20.0%
!! TGAAATTAGAAAATCAACAA+AGG + chr1_1:29071274-29071293 None:intergenic 20.0%
!! TTAAAGAACTTTACATGTAT+TGG - chr1_1:29071404-29071423 Msa0017480:five_prime_UTR 20.0%
! AGAAAGTAGAAGTAGAAAAA+GGG + chr1_1:29055480-29055499 None:intergenic 25.0%
! AAGAAAGTAGAAGTAGAAAA+AGG + chr1_1:29055481-29055500 None:intergenic 25.0%
!! AAAGATAGAAACCGAAATTT+TGG + chr1_1:29055612-29055631 None:intergenic 25.0%
! TCAAACAAAGTAGATATATC+CGG + chr1_1:29056201-29056220 None:intergenic 25.0%
! ATGGAATACAAGATGTTTAT+TGG - chr1_1:29056276-29056295 Msa0017480:intron 25.0%
! AATTAACGAGAAAATCAATG+AGG + chr1_1:29056335-29056354 None:intergenic 25.0%
! AATGTTGAGTTAAGTAAAGT+CGG - chr1_1:29056423-29056442 Msa0017480:intron 25.0%
! ACTGCAAACATTTCTTAATT+TGG + chr1_1:29056525-29056544 None:intergenic 25.0%
! TTAAAATACAAAACCCACTT+GGG + chr1_1:29056745-29056764 None:intergenic 25.0%
!! TTTAAAATACAAAACCCACT+TGG + chr1_1:29056746-29056765 None:intergenic 25.0%
! GTATGTTGAAATGTTGAAAA+TGG - chr1_1:29056854-29056873 Msa0017480:CDS 25.0%
!! AAATGTTGAAAATGGTAATG+TGG - chr1_1:29056862-29056881 Msa0017480:CDS 25.0%
! TGTAATTTACTAACAAGTTC+AGG + chr1_1:29056915-29056934 None:intergenic 25.0%
! TAGTTTGAGAGATTGAAATA+AGG - chr1_1:29056945-29056964 Msa0017480:intron 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr1_1:29057090-29057109 None:intergenic 25.0%
! CCTTTATGTTATTAGAGTTA+AGG + chr1_1:29057031-29057050 None:intergenic 25.0%
! CCTTAACTCTAATAACATAA+AGG - chr1_1:29057028-29057047 Msa0017480:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG + chr1_1:29057003-29057022 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr1_1:29057090-29057109 Msa0017480:intron 25.0%
!! TGGTCCTTTAAGTTATTTAT+TGG + chr1_1:29057158-29057177 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr1_1:29057207-29057226 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr1_1:29057210-29057229 Msa0017480:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr1_1:29057211-29057230 Msa0017480:intron 25.0%
! TTTCGGCTTAATTAATGATT+TGG + chr1_1:29057238-29057257 None:intergenic 25.0%
! TTCCTGAAACATGTTATAAT+GGG + chr1_1:29057419-29057438 None:intergenic 25.0%
! TTTCCTGAAACATGTTATAA+TGG + chr1_1:29057420-29057439 None:intergenic 25.0%
!! AACAAATATAACAGCTCTAA+GGG + chr1_1:29057527-29057546 None:intergenic 25.0%
! TAACAAATATAACAGCTCTA+AGG + chr1_1:29057528-29057547 None:intergenic 25.0%
!!! ATTTTGATAGAACTCAATGA+CGG - chr1_1:29057578-29057597 Msa0017480:intron 25.0%
! ATTTAGTGTACGTTTGTATT+AGG - chr1_1:29057660-29057679 Msa0017480:intron 25.0%
! TTTAGTGTACGTTTGTATTA+GGG - chr1_1:29057661-29057680 Msa0017480:intron 25.0%
! TTTCAAGATTCAACAAAATC+AGG + chr1_1:29057714-29057733 None:intergenic 25.0%
!! TTTTTCCGTGAAATTTATGA+TGG - chr1_1:29057851-29057870 Msa0017480:intron 25.0%
!! TTTTCCGTGAAATTTATGAT+GGG - chr1_1:29057852-29057871 Msa0017480:intron 25.0%
! CTCTTCATAAAGTTGAAAAA+AGG - chr1_1:29057878-29057897 Msa0017480:intron 25.0%
! AAATAAATAACTCAGTTGTG+TGG + chr1_1:29058016-29058035 None:intergenic 25.0%
!! TGATTAGCTAAAAATGGAAA+GGG + chr1_1:29058040-29058059 None:intergenic 25.0%
! TGCTAAAAGCAATATCAAAT+GGG - chr1_1:29058157-29058176 Msa0017480:intron 25.0%
! GGAATAACGAATAAGTAAAA+TGG + chr1_1:29058214-29058233 None:intergenic 25.0%
! ATTGTAACTGTAAGTACATT+TGG - chr1_1:29058556-29058575 Msa0017480:intron 25.0%
!!! TGGAAAAATGTATTTTGAAC+TGG - chr1_1:29058845-29058864 Msa0017480:intron 25.0%
! GTTAAATTTCTAACAATTGG+CGG - chr1_1:29059608-29059627 Msa0017480:intron 25.0%
! TAGATTCTATAACACTTCTT+TGG + chr1_1:29059823-29059842 None:intergenic 25.0%
! CTCTTACTGAATAAAATCAT+AGG + chr1_1:29059846-29059865 None:intergenic 25.0%
! CCTACAACAAAAACATTATA+TGG + chr1_1:29059918-29059937 None:intergenic 25.0%
!!! CCATATAATGTTTTTGTTGT+AGG - chr1_1:29059915-29059934 Msa0017480:intron 25.0%
! TAATATGGGGAAAAAATTGT+TGG - chr1_1:29060054-29060073 Msa0017480:intron 25.0%
! TTCATCATCAATTTCTTCAA+AGG + chr1_1:29060455-29060474 None:intergenic 25.0%
!!! TCAGACTTTTTAAAGAATAC+TGG - chr1_1:29060502-29060521 Msa0017480:intron 25.0%
! CAATTTGTAGAATATGCATT+CGG - chr1_1:29060577-29060596 Msa0017480:intron 25.0%
! AATTTGTAGAATATGCATTC+GGG - chr1_1:29060578-29060597 Msa0017480:intron 25.0%
!! AAAGTCTTTTAACAATGAGA+AGG - chr1_1:29060606-29060625 Msa0017480:intron 25.0%
! AAATATGATATTGAAAGCTC+TGG - chr1_1:29060655-29060674 Msa0017480:intron 25.0%
! AATATGATATTGAAAGCTCT+GGG - chr1_1:29060656-29060675 Msa0017480:intron 25.0%
! GGGAAATCAAATAATAATAC+TGG - chr1_1:29060676-29060695 Msa0017480:intron 25.0%
! TTCTAATGAACAAAGAAACA+TGG - chr1_1:29060723-29060742 Msa0017480:intron 25.0%
!! AAGCAAACTGAATCAATTTT+AGG - chr1_1:29061108-29061127 Msa0017480:intron 25.0%
! TTTCCAAAATGAAAGATGAA+AGG - chr1_1:29061157-29061176 Msa0017480:intron 25.0%
! ACAATTGTCAAATTCATAAG+AGG + chr1_1:29061488-29061507 None:intergenic 25.0%
! GATTTAAAAATATATCGCAG+TGG + chr1_1:29061865-29061884 None:intergenic 25.0%
!! TTTTAAATCTTGTGAGATAC+CGG - chr1_1:29061876-29061895 Msa0017480:intron 25.0%
! TAACAGAAATTACATGGTAT+CGG + chr1_1:29062028-29062047 None:intergenic 25.0%
! AAGAATCTCTAACAAATTGT+AGG - chr1_1:29062339-29062358 Msa0017480:intron 25.0%
! AGAATCTCTAACAAATTGTA+GGG - chr1_1:29062340-29062359 Msa0017480:intron 25.0%
! TATCGTATCATTAATTGTAG+GGG + chr1_1:29062424-29062443 None:intergenic 25.0%
! CTTATCGTATCATTAATTGT+AGG + chr1_1:29062426-29062445 None:intergenic 25.0%
!! AATGCATGTGGAAATTTTTA+AGG - chr1_1:29062672-29062691 Msa0017480:intron 25.0%
!! ATGCATGTGGAAATTTTTAA+GGG - chr1_1:29062673-29062692 Msa0017480:intron 25.0%
! GGACAAAGAAATATGAAAAA+GGG - chr1_1:29062710-29062729 Msa0017480:intron 25.0%
! GGGTCTAATAATTAAAAAAG+TGG - chr1_1:29062730-29062749 Msa0017480:intron 25.0%
!!! AAGTATTTTGGAAACTCTTT+TGG - chr1_1:29062786-29062805 Msa0017480:intron 25.0%
!!! GAAACTCTTTTGGAATAAAA+GGG - chr1_1:29062796-29062815 Msa0017480:intron 25.0%
!!! AAACTCTTTTGGAATAAAAG+GGG - chr1_1:29062797-29062816 Msa0017480:intron 25.0%
! TCAAAAAAGAATTCTCTATG+GGG + chr1_1:29062865-29062884 None:intergenic 25.0%
! CTTCAAAAAAGAATTCTCTA+TGG + chr1_1:29062867-29062886 None:intergenic 25.0%
!!! TAGAGAATTCTTTTTTGAAG+AGG - chr1_1:29062867-29062886 Msa0017480:intron 25.0%
!!! AGAGAATTCTTTTTTGAAGA+GGG - chr1_1:29062868-29062887 Msa0017480:intron 25.0%
! CAGAACAGAATATAAAAACA+TGG + chr1_1:29062923-29062942 None:intergenic 25.0%
! CTACTAACTATATACTAAGT+TGG + chr1_1:29062967-29062986 None:intergenic 25.0%
! CAACTTAGTATATAGTTAGT+AGG - chr1_1:29062965-29062984 Msa0017480:intron 25.0%
! AATCATAGCAAAGTTAGTTA+TGG + chr1_1:29063101-29063120 None:intergenic 25.0%
!!! CTAAGACATAAATGTTTTGA+AGG + chr1_1:29063398-29063417 None:intergenic 25.0%
! ACCAAATGAATATGATCAAT+AGG + chr1_1:29063952-29063971 None:intergenic 25.0%
! ATTTCATACTTACAATCTGA+AGG - chr1_1:29064012-29064031 Msa0017480:intron 25.0%
!! TAACATAAATATGCCATTTG+TGG + chr1_1:29064078-29064097 None:intergenic 25.0%
! AAATGGCATATTTATGTTAC+TGG - chr1_1:29064079-29064098 Msa0017480:intron 25.0%
! TAAACAGGATAAATTCAACT+AGG + chr1_1:29064189-29064208 None:intergenic 25.0%
! TATATATGTTCAGTAATGCT+TGG - chr1_1:29064293-29064312 Msa0017480:intron 25.0%
! ATATATGTTCAGTAATGCTT+GGG - chr1_1:29064294-29064313 Msa0017480:intron 25.0%
!! ATGACTATTATTTAGGGTAA+TGG + chr1_1:29064428-29064447 None:intergenic 25.0%
! TTAAAATTCAAAGTACACAG+TGG + chr1_1:29064453-29064472 None:intergenic 25.0%
! TTCCACCATATATAAATACA+AGG + chr1_1:29064739-29064758 None:intergenic 25.0%
!!! TAAACTTATATGGTATTGGT+AGG + chr1_1:29064954-29064973 None:intergenic 25.0%
! GAGATAAACTTATATGGTAT+TGG + chr1_1:29064958-29064977 None:intergenic 25.0%
!! AAATTGTTTCTTTAGAAGAG+AGG - chr1_1:29064991-29065010 Msa0017480:intron 25.0%
!! AATTGTTTCTTTAGAAGAGA+GGG - chr1_1:29064992-29065011 Msa0017480:intron 25.0%
!! CGGATCTGATAATAAATTTT+TGG - chr1_1:29065091-29065110 Msa0017480:CDS 25.0%
!! TGATTTTACTTCAAAACAGA+TGG + chr1_1:29065166-29065185 None:intergenic 25.0%
! ACAATTAATGTATGTCAACA+AGG + chr1_1:29065583-29065602 None:intergenic 25.0%
!!! TATTGATTGATTTTTCGAAC+AGG - chr1_1:29065726-29065745 Msa0017480:CDS 25.0%
! CAATATACTAGCATATAACA+AGG + chr1_1:29065878-29065897 None:intergenic 25.0%
! TTTCACGTAAAATGAAATAG+CGG + chr1_1:29066195-29066214 None:intergenic 25.0%
!!! CGCTATTTCATATAACTTTT+TGG + chr1_1:29066468-29066487 None:intergenic 25.0%
!!! ATATATTGCTGTTGATAACT+AGG + chr1_1:29066826-29066845 None:intergenic 25.0%
! CTTTATATTATGGAAAAAGG+GGG + chr1_1:29066946-29066965 None:intergenic 25.0%
! GCTTTATATTATGGAAAAAG+GGG + chr1_1:29066947-29066966 None:intergenic 25.0%
! GTGCTTTATATTATGGAAAA+AGG + chr1_1:29066949-29066968 None:intergenic 25.0%
! TAAGCAATCTTCTTTAATTG+TGG - chr1_1:29066993-29067012 Msa0017480:intron 25.0%
!!! TTATTTGGGATTTTAGCTAA+AGG - chr1_1:29067337-29067356 Msa0017480:intron 25.0%
!!! ATAAAGAATCTTGTTTTTCC+GGG + chr1_1:29067421-29067440 None:intergenic 25.0%
! AAAATTATCAAACAAGGATC+TGG + chr1_1:29067855-29067874 None:intergenic 25.0%
! AATTCTTACCAATCAACTTA+AGG + chr1_1:29067958-29067977 None:intergenic 25.0%
!! AGAATTTAGAATACCAACAT+TGG - chr1_1:29067972-29067991 Msa0017480:intron 25.0%
!! GAATTTAGAATACCAACATT+GGG - chr1_1:29067973-29067992 Msa0017480:intron 25.0%
! ATAAAGACATGATAAACTGA+AGG - chr1_1:29068307-29068326 Msa0017480:intron 25.0%
!!! CACTTGGTTTTTGAAAAAAA+AGG + chr1_1:29068418-29068437 None:intergenic 25.0%
! AAACGTTTACAGTTTATGAT+TGG + chr1_1:29068645-29068664 None:intergenic 25.0%
! AAATAAATATGGCGATATCA+AGG + chr1_1:29068686-29068705 None:intergenic 25.0%
! GGTTAGGTCATAAATAAATA+TGG + chr1_1:29068697-29068716 None:intergenic 25.0%
!!! TCAAATTATTTTACGAGGAA+AGG + chr1_1:29068718-29068737 None:intergenic 25.0%
!!! AAACATTTAAGTAGGTTGAT+AGG + chr1_1:29068964-29068983 None:intergenic 25.0%
! GGTTGTAAATAAATCAAAGA+AGG + chr1_1:29068999-29069018 None:intergenic 25.0%
!!! TTATTTTATGAGGAAAGGTT+AGG + chr1_1:29069020-29069039 None:intergenic 25.0%
! ATAAAGAATTCCAACATAGA+AGG + chr1_1:29069071-29069090 None:intergenic 25.0%
!!! TCTTTTCATCATGCTATTTT+AGG - chr1_1:29069095-29069114 Msa0017480:intron 25.0%
! TTCATCAGTCTTAGTTAAAT+TGG - chr1_1:29069192-29069211 Msa0017480:intron 25.0%
!! TAGTTAAATTGGACATTTTC+TGG - chr1_1:29069203-29069222 Msa0017480:intron 25.0%
!!! AATAAAGATATTTTGGGAGA+TGG - chr1_1:29069271-29069290 Msa0017480:intron 25.0%
! ATGATACACTAATATCATTG+AGG + chr1_1:29069619-29069638 None:intergenic 25.0%
!! CAAAAAGGGTGTAATTTATT+GGG - chr1_1:29070178-29070197 Msa0017480:intron 25.0%
! TATGATACCATCTTAGAATT+TGG + chr1_1:29070484-29070503 None:intergenic 25.0%
! TATCACTAAAATAGGAGTAA+AGG + chr1_1:29070614-29070633 None:intergenic 25.0%
!! AATCTGAAGTAATTATAAGG+GGG + chr1_1:29070657-29070676 None:intergenic 25.0%
!!! AACAGAAACAATCATTTTTG+AGG + chr1_1:29071066-29071085 None:intergenic 25.0%
!!! AAAATGATTGTTTCTGTTGA+AGG - chr1_1:29071068-29071087 Msa0017480:CDS 25.0%
!!! AAATGATTGTTTCTGTTGAA+GGG - chr1_1:29071069-29071088 Msa0017480:CDS 25.0%
!! TGACAACGTTGTAATATTTT+CGG - chr1_1:29071439-29071458 Msa0017480:five_prime_UTR 25.0%
CTAGTTAGTGTATTCAAACT+CGG + chr1_1:29055256-29055275 None:intergenic 30.0%
AAATGATTTGATGTGAGAAG+TGG + chr1_1:29055383-29055402 None:intergenic 30.0%
GTAATTTGGAGGAAAAGAAT+GGG + chr1_1:29055408-29055427 None:intergenic 30.0%
TGTAATTTGGAGGAAAAGAA+TGG + chr1_1:29055409-29055428 None:intergenic 30.0%
TTTGGTGGAAAATTATAGTG+AGG + chr1_1:29055594-29055613 None:intergenic 30.0%
CTATCTTTACCAAGATTCAA+CGG - chr1_1:29055624-29055643 Msa0017480:intron 30.0%
CTATTGAGAAAAACGATGAA+AGG - chr1_1:29055727-29055746 Msa0017480:intron 30.0%
! TTTTTGACACACTGTAATGT+GGG - chr1_1:29056375-29056394 Msa0017480:intron 30.0%
ATGTTGAGTTAAGTAAAGTC+GGG - chr1_1:29056424-29056443 Msa0017480:intron 30.0%
! TTTCTTAATTTGGATGCAAG+TGG + chr1_1:29056515-29056534 None:intergenic 30.0%
!!! TTATTTTTGAGAGGTTGACA+AGG - chr1_1:29056777-29056796 Msa0017480:CDS 30.0%
!! TATTTTTGAGAGGTTGACAA+GGG - chr1_1:29056778-29056797 Msa0017480:CDS 30.0%
!!! AGTTAGCAACATACTGATTT+TGG + chr1_1:29056813-29056832 None:intergenic 30.0%
! TCAGTATGTTGCTAACTTTT+TGG - chr1_1:29056816-29056835 Msa0017480:CDS 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG - chr1_1:29056992-29057011 Msa0017480:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr1_1:29056992-29057011 None:intergenic 30.0%
AAATTATCTTAACGTGACAC+TGG - chr1_1:29057265-29057284 Msa0017480:intron 30.0%
TTCCCATTATAACATGTTTC+AGG - chr1_1:29057414-29057433 Msa0017480:CDS 30.0%
TAACATGTTTCAGGAAAACT+TGG - chr1_1:29057423-29057442 Msa0017480:CDS 30.0%
AACATGTTTCAGGAAAACTT+GGG - chr1_1:29057424-29057443 Msa0017480:CDS 30.0%
! CTGATTAGCTAAAAATGGAA+AGG + chr1_1:29058041-29058060 None:intergenic 30.0%
!! ATGTGCTGATTAGCTAAAAA+TGG + chr1_1:29058046-29058065 None:intergenic 30.0%
CTGCTAAAAGCAATATCAAA+TGG - chr1_1:29058156-29058175 Msa0017480:intron 30.0%
GCTAAAAGCAATATCAAATG+GGG - chr1_1:29058158-29058177 Msa0017480:intron 30.0%
CTAAAAGCAATATCAAATGG+GGG - chr1_1:29058159-29058178 Msa0017480:intron 30.0%
ACTGAAGATATTTGTTTCAC+AGG + chr1_1:29058480-29058499 None:intergenic 30.0%
!!! CACTTTTAATTTTAAGCGGT+CGG - chr1_1:29058638-29058657 Msa0017480:intron 30.0%
!! AATGTATTTTGAACTGGTCA+AGG - chr1_1:29058851-29058870 Msa0017480:intron 30.0%
TTGGTTATTAAGACGTTGAT+TGG - chr1_1:29058909-29058928 Msa0017480:intron 30.0%
!! TCATGAGTTGATATTTACTG+AGG - chr1_1:29059079-29059098 Msa0017480:intron 30.0%
!!! GAAGTTGTTTTGCATTGATT+TGG - chr1_1:29059112-29059131 Msa0017480:intron 30.0%
TACAAATAAACTCAGTCTGA+GGG + chr1_1:29059299-29059318 None:intergenic 30.0%
TTACAAATAAACTCAGTCTG+AGG + chr1_1:29059300-29059319 None:intergenic 30.0%
GAGTTTATTTGTAACAAGCT+TGG - chr1_1:29059306-29059325 Msa0017480:intron 30.0%
!! AGTGTTAGAGTTCTAGATAT+TGG - chr1_1:29059358-29059377 Msa0017480:intron 30.0%
!! GTGTTAGAGTTCTAGATATT+GGG - chr1_1:29059359-29059378 Msa0017480:intron 30.0%
!! TATACACAAAAGTGCTTATG+GGG + chr1_1:29059385-29059404 None:intergenic 30.0%
!! GTATACACAAAAGTGCTTAT+GGG + chr1_1:29059386-29059405 None:intergenic 30.0%
TTATATGGTCAAAAGAATCG+TGG + chr1_1:29059903-29059922 None:intergenic 30.0%
AACAGTACAAGCTCTTAATA+TGG - chr1_1:29060039-29060058 Msa0017480:intron 30.0%
ACAGTACAAGCTCTTAATAT+GGG - chr1_1:29060040-29060059 Msa0017480:intron 30.0%
ACATGTACATGAAGAACAAA+TGG + chr1_1:29060115-29060134 None:intergenic 30.0%
GAGAAAACAGTTTAATGCAA+GGG + chr1_1:29060191-29060210 None:intergenic 30.0%
! TTAAACTGTTTTCTCCGAAA+AGG - chr1_1:29060196-29060215 Msa0017480:intron 30.0%
ATTCACTTTATCATTGACAG+TGG - chr1_1:29060308-29060327 Msa0017480:intron 30.0%
GCGACTAATTATGCTTAATT+TGG - chr1_1:29060330-29060349 Msa0017480:intron 30.0%
TTGCTTATGTGAGTAATATG+AGG - chr1_1:29060360-29060379 Msa0017480:intron 30.0%
ACTACTTACGACTCATTTAA+AGG + chr1_1:29060389-29060408 None:intergenic 30.0%
!! TTGATGATGAAAAAAAGTGG+TGG - chr1_1:29060464-29060483 Msa0017480:intron 30.0%
CGAATGCATATTCTACAAAT+TGG + chr1_1:29060579-29060598 None:intergenic 30.0%
TTCATTAGAAGCTTCATTAG+AGG + chr1_1:29060713-29060732 None:intergenic 30.0%
! AGTTGTCAAATCAACGTTTT+TGG - chr1_1:29060821-29060840 Msa0017480:intron 30.0%
TGCTAACGTTGTTCAAAAAT+TGG - chr1_1:29060867-29060886 Msa0017480:intron 30.0%
GCTAACGTTGTTCAAAAATT+GGG - chr1_1:29060868-29060887 Msa0017480:intron 30.0%
TGTTCCTGAGAAATTAAAGT+GGG - chr1_1:29060897-29060916 Msa0017480:CDS 30.0%
ATATCGGACAATAAAACAAC+TGG - chr1_1:29061018-29061037 Msa0017480:intron 30.0%
! CAAACTGAATCAATTTTAGG+AGG - chr1_1:29061111-29061130 Msa0017480:intron 30.0%
!! TTTCATTTTGGAAACTGTTG+CGG + chr1_1:29061151-29061170 None:intergenic 30.0%
! TTAAGAAAATAGAAAGCGCA+TGG + chr1_1:29061556-29061575 None:intergenic 30.0%
TCTTAACCATTAGAACTTTC+AGG - chr1_1:29061570-29061589 Msa0017480:intron 30.0%
!! TATCTTTAAGACAAACCAGA+TGG + chr1_1:29061702-29061721 None:intergenic 30.0%
!!! CTTTTATTTTTCAGACGCAA+TGG - chr1_1:29061728-29061747 Msa0017480:intron 30.0%
AGTCAAATATCATACAAGTC+CGG + chr1_1:29061898-29061917 None:intergenic 30.0%
TAAGTAGTTGCTAATGAGAT+TGG - chr1_1:29062077-29062096 Msa0017480:intron 30.0%
ATGAGGAAAAACGTAAAATG+CGG - chr1_1:29062214-29062233 Msa0017480:intron 30.0%
AGCTTATCATCATTGTGAAT+AGG - chr1_1:29062276-29062295 Msa0017480:intron 30.0%
GTTAGAGATTCTTGTAACAA+GGG + chr1_1:29062332-29062351 None:intergenic 30.0%
TGTTAGAGATTCTTGTAACA+AGG + chr1_1:29062333-29062352 None:intergenic 30.0%
TCATTAATTGTAGGGGAATA+TGG + chr1_1:29062417-29062436 None:intergenic 30.0%
ATGATACGATAAGAGAGAAA+AGG - chr1_1:29062433-29062452 Msa0017480:intron 30.0%
!! TGCATGTGGAAATTTTTAAG+GGG - chr1_1:29062674-29062693 Msa0017480:intron 30.0%
TTTAAGGGGTCTTAGATTAA+AGG - chr1_1:29062688-29062707 Msa0017480:intron 30.0%
TTAAGGGGTCTTAGATTAAA+GGG - chr1_1:29062689-29062708 Msa0017480:intron 30.0%
GGGACAAAGAAATATGAAAA+AGG - chr1_1:29062709-29062728 Msa0017480:intron 30.0%
!!! GGAAACTCTTTTGGAATAAA+AGG - chr1_1:29062795-29062814 Msa0017480:intron 30.0%
! TGTGGTGATATTTCTTTTCT+CGG + chr1_1:29062825-29062844 None:intergenic 30.0%
GAAATATCACCACATAAGAA+AGG - chr1_1:29062831-29062850 Msa0017480:intron 30.0%
CTATAGCTAGAATTCTCTAT+GGG + chr1_1:29062894-29062913 None:intergenic 30.0%
! AACTTTGCTATGATTTCCAT+AGG - chr1_1:29063106-29063125 Msa0017480:intron 30.0%
! TTTTTGTGGTTGTAGTCTTT+TGG + chr1_1:29063217-29063236 None:intergenic 30.0%
GTAACAAATTGTTTCAGTAG+TGG - chr1_1:29063506-29063525 Msa0017480:intron 30.0%
! AAAACCTTTTCCTTGAATCA+AGG - chr1_1:29063580-29063599 Msa0017480:intron 30.0%
TATTCCTTGATTCAAGGAAA+AGG + chr1_1:29063587-29063606 None:intergenic 30.0%
TCCTTGAATCAAGGAATAAT+TGG - chr1_1:29063589-29063608 Msa0017480:intron 30.0%
TCCAATTATTCCTTGATTCA+AGG + chr1_1:29063593-29063612 None:intergenic 30.0%
GAATCAAGGAATAATTGGAT+AGG - chr1_1:29063594-29063613 Msa0017480:intron 30.0%
!!! TTTTGAGTTAGTTGGTTCAT+GGG + chr1_1:29063708-29063727 None:intergenic 30.0%
!!! ACTCAAACTTTTGAGTTAGT+TGG + chr1_1:29063716-29063735 None:intergenic 30.0%
ACTAACTCAAAAGTTTGAGT+TGG - chr1_1:29063716-29063735 Msa0017480:intron 30.0%
! CAAAGAACTTTTGCAAGAAA+GGG + chr1_1:29063763-29063782 None:intergenic 30.0%
! TCAAAGAACTTTTGCAAGAA+AGG + chr1_1:29063764-29063783 None:intergenic 30.0%
TGAATATGATCAATAGGCAT+TGG + chr1_1:29063946-29063965 None:intergenic 30.0%
GCCTATTGATCATATTCATT+TGG - chr1_1:29063948-29063967 Msa0017480:intron 30.0%
TTATGTTACTGGTCATAGTT+TGG - chr1_1:29064090-29064109 Msa0017480:intron 30.0%
TATGTTACTGGTCATAGTTT+GGG - chr1_1:29064091-29064110 Msa0017480:intron 30.0%
ACAGTAGAAAGACAATAAAC+AGG + chr1_1:29064204-29064223 None:intergenic 30.0%
GTGGTCATGACTATTATTTA+GGG + chr1_1:29064434-29064453 None:intergenic 30.0%
AGTGGTCATGACTATTATTT+AGG + chr1_1:29064435-29064454 None:intergenic 30.0%
CTTTGTTAATCATTGTGTGT+AGG + chr1_1:29064486-29064505 None:intergenic 30.0%
! ACACCTAGTGACAAATTTTA+AGG - chr1_1:29064527-29064546 Msa0017480:intron 30.0%
! CACCTAGTGACAAATTTTAA+GGG - chr1_1:29064528-29064547 Msa0017480:intron 30.0%
! TTATCCATGCATTTGAAATG+TGG - chr1_1:29064629-29064648 Msa0017480:intron 30.0%
! TATCCATGCATTTGAAATGT+GGG - chr1_1:29064630-29064649 Msa0017480:intron 30.0%
TGCTGCCTTGTATTTATATA+TGG - chr1_1:29064731-29064750 Msa0017480:intron 30.0%
TGCCTTGTATTTATATATGG+TGG - chr1_1:29064734-29064753 Msa0017480:intron 30.0%
ATGGCAGAGATAAACTTATA+TGG + chr1_1:29064964-29064983 None:intergenic 30.0%
AAGAAACAATTTGCCAAGAA+TGG + chr1_1:29064983-29065002 None:intergenic 30.0%
!! AATGTTTTTACTATGAGGAG+AGG - chr1_1:29065065-29065084 Msa0017480:CDS 30.0%
AAAACGTCAAATCATCATGA+TGG - chr1_1:29065218-29065237 Msa0017480:intron 30.0%
TCATTGATGTATTCAGAAGA+AGG + chr1_1:29065302-29065321 None:intergenic 30.0%
CTTCTGAATACATCAATGAT+CGG - chr1_1:29065303-29065322 Msa0017480:CDS 30.0%
CATGCCATATGATATATACA+TGG - chr1_1:29065679-29065698 Msa0017480:CDS 30.0%
!!! TGTATAATTTTGGTTCTCCT+AGG - chr1_1:29065771-29065790 Msa0017480:CDS 30.0%
!!! GTATAATTTTGGTTCTCCTA+GGG - chr1_1:29065772-29065791 Msa0017480:CDS 30.0%
ATGTCCTTAATGTCTTTCAT+TGG - chr1_1:29065904-29065923 Msa0017480:CDS 30.0%
TAGTCCAATGAAAGACATTA+AGG + chr1_1:29065911-29065930 None:intergenic 30.0%
AGTATAGTTGTCATGGAATT+TGG - chr1_1:29065935-29065954 Msa0017480:CDS 30.0%
AAGACTATTATGCACTCATT+TGG + chr1_1:29065975-29065994 None:intergenic 30.0%
TGAAAATACAAGATTCTCCT+TGG - chr1_1:29066210-29066229 Msa0017480:CDS 30.0%
CTCTCTTCTTTCATTCTTTA+CGG - chr1_1:29066288-29066307 Msa0017480:intron 30.0%
AGAGAAGATTTAATGAAGAG+AGG + chr1_1:29066355-29066374 None:intergenic 30.0%
!! TTGAGAGAAGATGCTTTTTA+GGG + chr1_1:29066397-29066416 None:intergenic 30.0%
!! TTTGAGAGAAGATGCTTTTT+AGG + chr1_1:29066398-29066417 None:intergenic 30.0%
AATAGTAGACGAGTTATATG+TGG - chr1_1:29066612-29066631 Msa0017480:intron 30.0%
CATCAGATCTTAATAAGAGA+TGG - chr1_1:29066691-29066710 Msa0017480:intron 30.0%
CAGCAATATATAGCCTAAAT+AGG - chr1_1:29066835-29066854 Msa0017480:intron 30.0%
AGTGTTAGTATCTCCTATTT+AGG + chr1_1:29066851-29066870 None:intergenic 30.0%
!! TGTGGAAGTGCTTTATATTA+TGG + chr1_1:29066956-29066975 None:intergenic 30.0%
! TATAAAGCACTTCCACATTA+TGG - chr1_1:29066959-29066978 Msa0017480:intron 30.0%
ATAAGAACTACACCATAATG+TGG + chr1_1:29066974-29066993 None:intergenic 30.0%
!!! ACCTTTAGTTTTCTGAGTTT+AGG - chr1_1:29067072-29067091 Msa0017480:intron 30.0%
TCCTAAACTCAGAAAACTAA+AGG + chr1_1:29067076-29067095 None:intergenic 30.0%
! TACTCATAGTCTTTAGAAGT+TGG + chr1_1:29067185-29067204 None:intergenic 30.0%
TGTTCAAACTAGAAGTTATG+AGG - chr1_1:29067272-29067291 Msa0017480:intron 30.0%
CAATTGATGTCTTCTTAGTA+CGG - chr1_1:29067360-29067379 Msa0017480:intron 30.0%
! CCATTATTCATTTTGAGCTT+TGG + chr1_1:29067473-29067492 None:intergenic 30.0%
CCAAAGCTCAAAATGAATAA+TGG - chr1_1:29067470-29067489 Msa0017480:intron 30.0%
ATATAGCTTGGAAGACAAAA+AGG + chr1_1:29067544-29067563 None:intergenic 30.0%
! CTTTTACCTAACATATAGCT+TGG + chr1_1:29067556-29067575 None:intergenic 30.0%
CTTTCACTTTCTGCAAATAT+AGG + chr1_1:29067632-29067651 None:intergenic 30.0%
TACCAGGTTGTCAAATTAAT+TGG + chr1_1:29067885-29067904 None:intergenic 30.0%
!! AAGGTTTACCTTAAGTTGAT+TGG - chr1_1:29067947-29067966 Msa0017480:intron 30.0%
! ATACAAGAAATTTAGGGTGA+GGG + chr1_1:29068176-29068195 None:intergenic 30.0%
! TATACAAGAAATTTAGGGTG+AGG + chr1_1:29068177-29068196 None:intergenic 30.0%
!! GGAAAAGAAAACCACTTTTA+GGG + chr1_1:29068397-29068416 None:intergenic 30.0%
!! AGGAAAAGAAAACCACTTTT+AGG + chr1_1:29068398-29068417 None:intergenic 30.0%
!! CTTGGTTTTTGAAAAATCAC+CGG + chr1_1:29068496-29068515 None:intergenic 30.0%
!! TTATTTTACGAGGAAAGGTT+AGG + chr1_1:29068713-29068732 None:intergenic 30.0%
TTCGGCAAAAACATTTAAGT+AGG + chr1_1:29068972-29068991 None:intergenic 30.0%
CTATTACATCACATTACTAG+AGG - chr1_1:29069935-29069954 Msa0017480:intron 30.0%
! ATCACATTACTAGAGGTATA+TGG - chr1_1:29069942-29069961 Msa0017480:intron 30.0%
!! TCATTCTTATTTGGCTTTAC+TGG - chr1_1:29070025-29070044 Msa0017480:intron 30.0%
!! CATAAAGAGGTGTTGATAAT+AGG - chr1_1:29070125-29070144 Msa0017480:intron 30.0%
! GCAAAAAGGGTGTAATTTAT+TGG - chr1_1:29070177-29070196 Msa0017480:intron 30.0%
TATAGTCTATCTCTATAAGC+AGG - chr1_1:29070390-29070409 Msa0017480:intron 30.0%
ATAGTCTATCTCTATAAGCA+GGG - chr1_1:29070391-29070410 Msa0017480:intron 30.0%
TTAACTTCATCTCAGTAAAC+CGG + chr1_1:29070454-29070473 None:intergenic 30.0%
! GTTGAATCCAAATTCTAAGA+TGG - chr1_1:29070474-29070493 Msa0017480:intron 30.0%
CTATCCAAGATTGATATTGA+CGG - chr1_1:29070506-29070525 Msa0017480:intron 30.0%
TATCCAAGATTGATATTGAC+GGG - chr1_1:29070507-29070526 Msa0017480:intron 30.0%
AAAGACCAAATTGATATCGA+CGG - chr1_1:29070538-29070557 Msa0017480:intron 30.0%
! TTAATGTCACTTGTATCTGA+AGG - chr1_1:29070575-29070594 Msa0017480:intron 30.0%
! TAATGTCACTTGTATCTGAA+GGG - chr1_1:29070576-29070595 Msa0017480:intron 30.0%
AAGTAATTATAAGGGGGAAT+TGG + chr1_1:29070651-29070670 None:intergenic 30.0%
AACGTACTTCTATTTGTACA+TGG + chr1_1:29070831-29070850 None:intergenic 30.0%
TACATACAAACTGGAAGATA+CGG - chr1_1:29070850-29070869 Msa0017480:intron 30.0%
AAGATGCACATAATCTTTAC+TGG - chr1_1:29070875-29070894 Msa0017480:intron 30.0%
ATAATCTTTACTGGTATGGT+AGG - chr1_1:29070884-29070903 Msa0017480:intron 30.0%
!! TTAACGCTTATGTTTTTGTC+AGG + chr1_1:29071097-29071116 None:intergenic 30.0%
GACAAAAACATAAGCGTTAA+CGG - chr1_1:29071097-29071116 Msa0017480:CDS 30.0%
!! TAGTTTTTCCGTAACTTGTA+AGG - chr1_1:29071322-29071341 Msa0017480:five_prime_UTR 30.0%
!! AGTTTTTCCGTAACTTGTAA+GGG - chr1_1:29071323-29071342 Msa0017480:five_prime_UTR 30.0%
! TTTGTTCGGGTTTATGTCAA+TGG + chr1_1:29055296-29055315 None:intergenic 35.0%
GAAGGTTTATGTACAGGAAA+TGG + chr1_1:29055334-29055353 None:intergenic 35.0%
TGGCAATTAGTGTAATTTGG+AGG + chr1_1:29055419-29055438 None:intergenic 35.0%
TGGTGGCAATTAGTGTAATT+TGG + chr1_1:29055422-29055441 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAAG+TGG + chr1_1:29055442-29055461 None:intergenic 35.0%
AGTAGAAGTAGAAAAAGGGA+GGG + chr1_1:29055476-29055495 None:intergenic 35.0%
AAGTAGAAGTAGAAAAAGGG+AGG + chr1_1:29055477-29055496 None:intergenic 35.0%
! GATAGAAACCGAAATTTTGG+TGG + chr1_1:29055609-29055628 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGCA+AGG - chr1_1:29055654-29055673 Msa0017480:intron 35.0%
! ACTCTTTTCAATCTGAGAAC+CGG + chr1_1:29055706-29055725 None:intergenic 35.0%
!! ACAGCAAGGTTGATATCAAA+CGG + chr1_1:29055756-29055775 None:intergenic 35.0%
AGAAAAGAAGAACATACAGG+AGG + chr1_1:29055816-29055835 None:intergenic 35.0%
! TCCTGTATGTTCTTCTTTTC+TGG - chr1_1:29055815-29055834 Msa0017480:intron 35.0%
ACCAGAAAAGAAGAACATAC+AGG + chr1_1:29055819-29055838 None:intergenic 35.0%
TGAGTTTAATAGGAATGCAG+TGG - chr1_1:29055971-29055990 Msa0017480:intron 35.0%
CTCTCAGTGTCAATTTAAGT+AGG - chr1_1:29056037-29056056 Msa0017480:intron 35.0%
GACAGTGTAAAATACTACTC+CGG - chr1_1:29056110-29056129 Msa0017480:intron 35.0%
!! AGCTATATTTGAGTTGAGAC+CGG + chr1_1:29056132-29056151 None:intergenic 35.0%
! GTTTTTGACACACTGTAATG+TGG - chr1_1:29056374-29056393 Msa0017480:intron 35.0%
! TTTTGACACACTGTAATGTG+GGG - chr1_1:29056376-29056395 Msa0017480:intron 35.0%
AGATCAAACTCGATTACCAA+TGG - chr1_1:29056469-29056488 Msa0017480:intron 35.0%
!! ATGGTAATGTGGTGTGTTTT+TGG - chr1_1:29056873-29056892 Msa0017480:intron 35.0%
AATAACATAAAGGACCAGAG+TGG - chr1_1:29057038-29057057 Msa0017480:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr1_1:29057218-29057237 None:intergenic 35.0%
CTCAGAAAGATAGATTGTCT+TGG + chr1_1:29057476-29057495 None:intergenic 35.0%
!!! GAGTTTTGACTTCATCTAGA+TGG - chr1_1:29057620-29057639 Msa0017480:intron 35.0%
GTTTGTATTAGGGATGAGTT+CGG - chr1_1:29057671-29057690 Msa0017480:intron 35.0%
GTTGCCCATCATAAATTTCA+CGG + chr1_1:29057859-29057878 None:intergenic 35.0%
!! CATTTTAACCATTACCTGCT+AGG + chr1_1:29058240-29058259 None:intergenic 35.0%
!! AGAAAGTACTTGCAAATGCA+AGG + chr1_1:29058356-29058375 None:intergenic 35.0%
CACTTCCACACGTATTTAAA+AGG + chr1_1:29058798-29058817 None:intergenic 35.0%
AATACGTGTGGAAGTGATAT+TGG - chr1_1:29058802-29058821 Msa0017480:intron 35.0%
GTCTTAATAACCAATCACGT+AGG + chr1_1:29058903-29058922 None:intergenic 35.0%
! TATTAAGACGTTGATTGGAC+TGG - chr1_1:29058914-29058933 Msa0017480:intron 35.0%
CTTATAGACAATCTACCTCA+AGG - chr1_1:29058944-29058963 Msa0017480:intron 35.0%
TACAAGAAAACAGTACCTTG+AGG + chr1_1:29058962-29058981 None:intergenic 35.0%
!!! TCAAGGTACTGTTTTCTTGT+AGG - chr1_1:29058961-29058980 Msa0017480:CDS 35.0%
!!! CAAGGTACTGTTTTCTTGTA+GGG - chr1_1:29058962-29058981 Msa0017480:CDS 35.0%
TCTTCATATTGCCTCTAAAC+CGG - chr1_1:29059139-29059158 Msa0017480:intron 35.0%
! TCTCAAAAAAACCGGTTTAG+AGG + chr1_1:29059153-29059172 None:intergenic 35.0%
TCAGGTTCTCTCAAAAAAAC+CGG + chr1_1:29059161-29059180 None:intergenic 35.0%
ACAATCCACTTCAATATGTC+AGG + chr1_1:29059179-29059198 None:intergenic 35.0%
GAGAGATGTATTGGGAATAT+CGG + chr1_1:29059272-29059291 None:intergenic 35.0%
ATATTCCCAATACATCTCTC+AGG - chr1_1:29059272-29059291 Msa0017480:intron 35.0%
TATTCCCAATACATCTCTCA+GGG - chr1_1:29059273-29059292 Msa0017480:intron 35.0%
!! CGTATACACAAAAGTGCTTA+TGG + chr1_1:29059387-29059406 None:intergenic 35.0%
AACAATTGGCGGTATACATT+AGG - chr1_1:29059619-29059638 Msa0017480:intron 35.0%
! TATACATTAGGTTGCAGCTT+GGG - chr1_1:29059631-29059650 Msa0017480:intron 35.0%
! TGGAGGTATGTTTCTTTCAA+TGG - chr1_1:29059997-29060016 Msa0017480:intron 35.0%
CAGTACAAGCTCTTAATATG+GGG - chr1_1:29060041-29060060 Msa0017480:intron 35.0%
TGTTCTTCATGTACATGTAG+TGG - chr1_1:29060117-29060136 Msa0017480:intron 35.0%
GGAGAAAACAGTTTAATGCA+AGG + chr1_1:29060192-29060211 None:intergenic 35.0%
ATGATGAAAAAAAGTGGTGG+AGG - chr1_1:29060467-29060486 Msa0017480:intron 35.0%
!! TTTTGATTCTGCACTCAGAA+AGG - chr1_1:29060525-29060544 Msa0017480:intron 35.0%
ATTCTACAAATTGGCTGACT+TGG + chr1_1:29060570-29060589 None:intergenic 35.0%
! CTTTTAACAATGAGAAGGTC+CGG - chr1_1:29060611-29060630 Msa0017480:intron 35.0%
CATTATCAGTATCAGACATC+CGG + chr1_1:29060633-29060652 None:intergenic 35.0%
TGTGACAGTGAAACTGAAAA+TGG - chr1_1:29060760-29060779 Msa0017480:intron 35.0%
CTGTTCCTGAGAAATTAAAG+TGG - chr1_1:29060896-29060915 Msa0017480:CDS 35.0%
CTGGAGTTCCTAAACAAAAT+TGG - chr1_1:29060925-29060944 Msa0017480:CDS 35.0%
!! ACTGCGAACCAATTTTGTTT+AGG + chr1_1:29060936-29060955 None:intergenic 35.0%
TTCACTTCCAGAGGTAAAAA+AGG - chr1_1:29061068-29061087 Msa0017480:intron 35.0%
! ACGCCTTTCATCTTTCATTT+TGG + chr1_1:29061163-29061182 None:intergenic 35.0%
! CAACAATGATCCATTTTCTG+GGG + chr1_1:29061271-29061290 None:intergenic 35.0%
! CCAACAATGATCCATTTTCT+GGG + chr1_1:29061272-29061291 None:intergenic 35.0%
! TCCAACAATGATCCATTTTC+TGG + chr1_1:29061273-29061292 None:intergenic 35.0%
AGAAAATGGATCATTGTTGG+AGG - chr1_1:29061272-29061291 Msa0017480:intron 35.0%
AACTCAGACTTGATGAAACT+TGG + chr1_1:29061387-29061406 None:intergenic 35.0%
GGTAAGTGAACTCATTGATA+GGG + chr1_1:29061467-29061486 None:intergenic 35.0%
AGGTAAGTGAACTCATTGAT+AGG + chr1_1:29061468-29061487 None:intergenic 35.0%
TGGCAGTAAAACACAGAATT+TGG + chr1_1:29061523-29061542 None:intergenic 35.0%
AAGCGCATGGAAAAATATGT+TGG + chr1_1:29061543-29061562 None:intergenic 35.0%
! TTGCAACCTGAAAGTTCTAA+TGG + chr1_1:29061579-29061598 None:intergenic 35.0%
!! AGAACTTTCAGGTTGCAATT+TGG - chr1_1:29061581-29061600 Msa0017480:intron 35.0%
!! TATTTTTCAGACGCAATGGA+AGG - chr1_1:29061732-29061751 Msa0017480:intron 35.0%
GGTTAGAAATGAATGTTACC+CGG + chr1_1:29061788-29061807 None:intergenic 35.0%
CCACTAAACAAGTCAAAACT+AGG + chr1_1:29061809-29061828 None:intergenic 35.0%
!!! CCTAGTTTTGACTTGTTTAG+TGG - chr1_1:29061806-29061825 Msa0017480:intron 35.0%
GGACTTGTATGATATTTGAC+TGG - chr1_1:29061897-29061916 Msa0017480:intron 35.0%
! TTAGAGACACCATTTTGTTG+AGG + chr1_1:29061975-29061994 None:intergenic 35.0%
CATTAGCAACTACTTACACA+AGG + chr1_1:29062073-29062092 None:intergenic 35.0%
GAATAGCAACTACTTACACA+AGG - chr1_1:29062099-29062118 Msa0017480:intron 35.0%
CGACTGTAAAACAAAATACC+CGG - chr1_1:29062156-29062175 Msa0017480:intron 35.0%
!!! TTCCCTTCTGACTTTTTTAC+CGG + chr1_1:29062178-29062197 None:intergenic 35.0%
! GAGTCTTTTCCTTTCTTATG+TGG + chr1_1:29062843-29062862 None:intergenic 35.0%
CCTATAGCTAGAATTCTCTA+TGG + chr1_1:29062895-29062914 None:intergenic 35.0%
! CCATAGAGAATTCTAGCTAT+AGG - chr1_1:29062892-29062911 Msa0017480:intron 35.0%
TTAGTAGGCTATGCTATCTA+AGG - chr1_1:29062980-29062999 Msa0017480:intron 35.0%
TAGTAGGCTATGCTATCTAA+GGG - chr1_1:29062981-29063000 Msa0017480:intron 35.0%
!! CACCAGAGGATCATTTTTAA+GGG + chr1_1:29063008-29063027 None:intergenic 35.0%
CATATGATTCAGTAAGGACA+AGG - chr1_1:29063295-29063314 Msa0017480:intron 35.0%
!!! AATGTTTTGAAGGCAGTGTT+TGG + chr1_1:29063388-29063407 None:intergenic 35.0%
CAAGGGATATTAAGATCTCT+TGG + chr1_1:29063674-29063693 None:intergenic 35.0%
!!! CTTTTGAGTTAGTTGGTTCA+TGG + chr1_1:29063709-29063728 None:intergenic 35.0%
AGTTCTTTGAGCATGAAATG+TGG - chr1_1:29063774-29063793 Msa0017480:intron 35.0%
ATTCTGAGTTCATCCACAAA+TGG - chr1_1:29064062-29064081 Msa0017480:intron 35.0%
CTCCCTTAAAATTTGTCACT+AGG + chr1_1:29064533-29064552 None:intergenic 35.0%
! TGCATAAATAGACTTTTCGC+AGG - chr1_1:29064674-29064693 Msa0017480:intron 35.0%
! GCATAAATAGACTTTTCGCA+GGG - chr1_1:29064675-29064694 Msa0017480:intron 35.0%
TAAGCACTCAAGGGAAAATT+TGG + chr1_1:29064812-29064831 None:intergenic 35.0%
GCAACAAAATAAGCACTCAA+GGG + chr1_1:29064821-29064840 None:intergenic 35.0%
TGCAACAAAATAAGCACTCA+AGG + chr1_1:29064822-29064841 None:intergenic 35.0%
AAGTTTATCTCTGCCATTCT+TGG - chr1_1:29064967-29064986 Msa0017480:intron 35.0%
!! GCGACAATGTTTTTACTATG+AGG - chr1_1:29065060-29065079 Msa0017480:intron 35.0%
! ACGTTTTCAAAAGAATGCAG+GGG + chr1_1:29065205-29065224 None:intergenic 35.0%
! GACGTTTTCAAAAGAATGCA+GGG + chr1_1:29065206-29065225 None:intergenic 35.0%
! TGACGTTTTCAAAAGAATGC+AGG + chr1_1:29065207-29065226 None:intergenic 35.0%
!! TGATTGATTTTTCGAACAGG+CGG - chr1_1:29065729-29065748 Msa0017480:CDS 35.0%
! AATCTTTTGTTACCAACCCT+AGG + chr1_1:29065791-29065810 None:intergenic 35.0%
TGGTAACAAAAGATTTGCAG+AGG - chr1_1:29065796-29065815 Msa0017480:CDS 35.0%
ATTTGCAGAGGTTTACAATG+AGG - chr1_1:29065808-29065827 Msa0017480:CDS 35.0%
CTAGAGTAGTATAGTTGTCA+TGG - chr1_1:29065928-29065947 Msa0017480:CDS 35.0%
TCTTATGCACAAGATACCTT+TGG - chr1_1:29065994-29066013 Msa0017480:CDS 35.0%
ATTAACTACTATGCATCCAG+CGG + chr1_1:29066034-29066053 None:intergenic 35.0%
GGATGCATAGTAGTTAATAG+CGG - chr1_1:29066036-29066055 Msa0017480:CDS 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr1_1:29066505-29066524 Msa0017480:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + chr1_1:29066546-29066565 None:intergenic 35.0%
CTATCCGCTATTAACTACTA+TGG - chr1_1:29066546-29066565 Msa0017480:intron 35.0%
!! TTTGCTATTAAGTCGAGTAG+AGG + chr1_1:29066646-29066665 None:intergenic 35.0%
GTAAAGATCCAGTAAGATGA+AGG - chr1_1:29066668-29066687 Msa0017480:intron 35.0%
AACTATGACAGAAAGAAGAC+TGG - chr1_1:29066892-29066911 Msa0017480:intron 35.0%
ACTATGACAGAAAGAAGACT+GGG - chr1_1:29066893-29066912 Msa0017480:intron 35.0%
GCTAGATATCTAGGAAATGT+GGG + chr1_1:29067112-29067131 None:intergenic 35.0%
ACTACAAAGGCTAGATATCT+AGG + chr1_1:29067121-29067140 None:intergenic 35.0%
GTTCTTACCTTACAAGACTA+TGG - chr1_1:29067159-29067178 Msa0017480:intron 35.0%
! TCATCTTTGAAAATCCCCTA+TGG - chr1_1:29067210-29067229 Msa0017480:intron 35.0%
! CATCTTTGAAAATCCCCTAT+GGG - chr1_1:29067211-29067230 Msa0017480:intron 35.0%
TGTGAGTTTATGTTCCCATA+GGG + chr1_1:29067228-29067247 None:intergenic 35.0%
!! TTCTCTGAAATGTCTGTTGT+CGG + chr1_1:29067386-29067405 None:intergenic 35.0%
AGAGAATGTTCAATTAGACC+CGG - chr1_1:29067400-29067419 Msa0017480:intron 35.0%
TGTCTTCCAAGCTATATGTT+AGG - chr1_1:29067547-29067566 Msa0017480:intron 35.0%
ATATCATACCTACAATACCC+CGG - chr1_1:29067679-29067698 Msa0017480:intron 35.0%
ATGACAATAACCCATTAACC+GGG + chr1_1:29067700-29067719 None:intergenic 35.0%
CATGACAATAACCCATTAAC+CGG + chr1_1:29067701-29067720 None:intergenic 35.0%
! TCAACCTTTATTTCTTGCTG+CGG - chr1_1:29067725-29067744 Msa0017480:intron 35.0%
AATTTGACAACCTGGTATGT+AGG - chr1_1:29067888-29067907 Msa0017480:intron 35.0%
AATTTAAAAAAGGGCCCAAC+CGG + chr1_1:29068055-29068074 None:intergenic 35.0%
! TACAAGAAATTTAGGGTGAG+GGG + chr1_1:29068175-29068194 None:intergenic 35.0%
CAAATCAAAGACTGTACAAC+TGG + chr1_1:29068266-29068285 None:intergenic 35.0%
!! TGTAAAATTGTTTCTGGGAC+AGG - chr1_1:29068284-29068303 Msa0017480:intron 35.0%
!! TTTTAAAAAAAGGGCCCAAC+CGG - chr1_1:29068463-29068482 Msa0017480:intron 35.0%
!! TTTTAAAAAAAGGGCCCAAC+CGG - chr1_1:29068463-29068482 Msa0017480:intron 35.0%
AAATATGGCGATATCAAGGA+AGG + chr1_1:29068682-29068701 None:intergenic 35.0%
!! ATTTTAAAAAAGGGCCCAAC+CGG - chr1_1:29068862-29068881 Msa0017480:intron 35.0%
TAATTTCGTGCCTTCTATGT+TGG - chr1_1:29069058-29069077 Msa0017480:intron 35.0%
ATCAAATGCATGTTATCCAC+AGG - chr1_1:29069246-29069265 Msa0017480:CDS 35.0%
TCTGCTGCTATAATCACATT+TGG - chr1_1:29069673-29069692 Msa0017480:intron 35.0%
CTGCTGCTATAATCACATTT+GGG - chr1_1:29069674-29069693 Msa0017480:intron 35.0%
TGCTGCTATAATCACATTTG+GGG - chr1_1:29069675-29069694 Msa0017480:intron 35.0%
GGATAGATCAAAGTTGTGAA+TGG + chr1_1:29069809-29069828 None:intergenic 35.0%
ACTTTGATCTATCCAGATGA+AGG - chr1_1:29069815-29069834 Msa0017480:intron 35.0%
CTTTGATCTATCCAGATGAA+GGG - chr1_1:29069816-29069835 Msa0017480:intron 35.0%
TACTGGTAGCTTAGTTTACT+TGG - chr1_1:29070042-29070061 Msa0017480:intron 35.0%
ACTGGTAGCTTAGTTTACTT+GGG - chr1_1:29070043-29070062 Msa0017480:intron 35.0%
GGAAGAACTCTTTGTCTATT+GGG - chr1_1:29070064-29070083 Msa0017480:intron 35.0%
TAGTCTATCTCTATAAGCAG+GGG - chr1_1:29070392-29070411 Msa0017480:intron 35.0%
CTATCAAACTAATGTCAAGC+CGG - chr1_1:29070432-29070451 Msa0017480:intron 35.0%
TAACCCGTCAATATCAATCT+TGG + chr1_1:29070513-29070532 None:intergenic 35.0%
CTAAACCGTCGATATCAATT+TGG + chr1_1:29070546-29070565 None:intergenic 35.0%
AATTGATATCGACGGTTTAG+AGG - chr1_1:29070546-29070565 Msa0017480:intron 35.0%
GAAGTACGTTACATACAAAC+TGG - chr1_1:29070841-29070860 Msa0017480:intron 35.0%
GCACATAATCTTTACTGGTA+TGG - chr1_1:29070880-29070899 Msa0017480:intron 35.0%
AGGATTGAGTCTAGCAAATT+GGG - chr1_1:29070963-29070982 Msa0017480:CDS 35.0%
!!! AATCATTTTTGAGGCACAGT+CGG + chr1_1:29071057-29071076 None:intergenic 35.0%
GTAATTGCCATCCAATGAAA+AGG + chr1_1:29071125-29071144 None:intergenic 35.0%
!! GTATTTCTGGTTTCCATTCT+AGG - chr1_1:29071217-29071236 Msa0017480:five_prime_UTR 35.0%
GTCATTTCCCTTACAAGTTA+CGG + chr1_1:29071333-29071352 None:intergenic 35.0%
TTGTAAGGGAAATGACTACT+CGG - chr1_1:29071337-29071356 Msa0017480:five_prime_UTR 35.0%
! TTCGGGTTTATGTCAATGGA+CGG + chr1_1:29055292-29055311 None:intergenic 40.0%
!! GTTGGTTCTGGAATTTGTTC+GGG + chr1_1:29055309-29055328 None:intergenic 40.0%
!! GGTTGGTTCTGGAATTTGTT+CGG + chr1_1:29055310-29055329 None:intergenic 40.0%
TATGTACAGGAAATGGTGGT+TGG + chr1_1:29055327-29055346 None:intergenic 40.0%
GGTTTATGTACAGGAAATGG+TGG + chr1_1:29055331-29055350 None:intergenic 40.0%
TTGATGTGAGAAGTGGAAGT+GGG + chr1_1:29055376-29055395 None:intergenic 40.0%
TTTGATGTGAGAAGTGGAAG+TGG + chr1_1:29055377-29055396 None:intergenic 40.0%
GAAGAAGAAGAAGAAAGTGG+TGG + chr1_1:29055439-29055458 None:intergenic 40.0%
! GGAAAGTGCGAGAAAATTGA+GGG + chr1_1:29055569-29055588 None:intergenic 40.0%
GTGGAAAATTATAGTGAGGC+GGG + chr1_1:29055590-29055609 None:intergenic 40.0%
GGTGGAAAATTATAGTGAGG+CGG + chr1_1:29055591-29055610 None:intergenic 40.0%
CTGATTCTTCCGTTGAATCT+TGG + chr1_1:29055636-29055655 None:intergenic 40.0%
ATCTGTTGTTCGTCGAAAAC+CGG - chr1_1:29055684-29055703 Msa0017480:intron 40.0%
!! AACCTTGCTGTTATTCTTGC+TGG - chr1_1:29055765-29055784 Msa0017480:intron 40.0%
AACCAGCAAGAATAACAGCA+AGG + chr1_1:29055770-29055789 None:intergenic 40.0%
GTTTAATAGGAATGCAGTGG+CGG - chr1_1:29055974-29055993 Msa0017480:intron 40.0%
ACGAGAAAATCAATGAGGCA+TGG + chr1_1:29056330-29056349 None:intergenic 40.0%
TTACCAATGGAGTTCGTAAG+AGG - chr1_1:29056482-29056501 Msa0017480:intron 40.0%
TACCAATGGAGTTCGTAAGA+GGG - chr1_1:29056483-29056502 Msa0017480:intron 40.0%
TGTTTGCAGTTCAAGTGCTT+AGG - chr1_1:29056535-29056554 Msa0017480:intron 40.0%
AATACAAAACCCACTTGGGT+TGG + chr1_1:29056741-29056760 None:intergenic 40.0%
!!! GTAATGTGGTGTGTTTTTGG+AGG - chr1_1:29056876-29056895 Msa0017480:intron 40.0%
TGTTTCAGGAAAACTTGGGT+AGG - chr1_1:29057428-29057447 Msa0017480:CDS 40.0%
CAGTGAGAATGGCAAAATCA+CGG + chr1_1:29057767-29057786 None:intergenic 40.0%
GCACATTATGTATGTGTGGT+TGG + chr1_1:29057795-29057814 None:intergenic 40.0%
GCATGCACATTATGTATGTG+TGG + chr1_1:29057799-29057818 None:intergenic 40.0%
AGCTAATCAGCACATCTACT+TGG - chr1_1:29058051-29058070 Msa0017480:intron 40.0%
GCAGTAAATAATTGCAGCAG+CGG - chr1_1:29058504-29058523 Msa0017480:intron 40.0%
AAAAGAGCCAACATGGAATG+AGG - chr1_1:29058611-29058630 Msa0017480:intron 40.0%
TCATGCTTCTTAACCTGTAG+AGG + chr1_1:29058672-29058691 None:intergenic 40.0%
! GGGAACCTTTTAAATACGTG+TGG - chr1_1:29058790-29058809 Msa0017480:intron 40.0%
AATTTGCATGCTGTGAGACA+TGG - chr1_1:29058825-29058844 Msa0017480:intron 40.0%
AGTGATCATTCCTACGTGAT+TGG - chr1_1:29058890-29058909 Msa0017480:intron 40.0%
GAGAACCTGACATATTGAAG+TGG - chr1_1:29059171-29059190 Msa0017480:intron 40.0%
! TATTGGGAATATCGGCTAGA+TGG + chr1_1:29059264-29059283 None:intergenic 40.0%
! GAAGTGAGCGTTTTTCCTTA+TGG - chr1_1:29059487-29059506 Msa0017480:intron 40.0%
CAGATGATATACCTCAGTAC+AGG + chr1_1:29059517-29059536 None:intergenic 40.0%
CTGTACTGAGGTATATCATC+TGG - chr1_1:29059515-29059534 Msa0017480:intron 40.0%
! GTATACATTAGGTTGCAGCT+TGG - chr1_1:29059630-29059649 Msa0017480:intron 40.0%
!! ATGCAGTCGTTGATTTGGAA+TGG - chr1_1:29059690-29059709 Msa0017480:intron 40.0%
!! GATTTGGAATGGCTTTGTGA+TGG - chr1_1:29059701-29059720 Msa0017480:intron 40.0%
AGGAGATACGCATGAAATAC+TGG - chr1_1:29059935-29059954 Msa0017480:intron 40.0%
AGATACGCATGAAATACTGG+TGG - chr1_1:29059938-29059957 Msa0017480:intron 40.0%
! CATCATTTTACAGTAGCCCT+TGG + chr1_1:29060250-29060269 None:intergenic 40.0%
AACTGAAAATGGACACGCTT+TGG - chr1_1:29060771-29060790 Msa0017480:intron 40.0%
! CCATCCCACTTTAATTTCTC+AGG + chr1_1:29060904-29060923 None:intergenic 40.0%
CCTGAGAAATTAAAGTGGGA+TGG - chr1_1:29060901-29060920 Msa0017480:CDS 40.0%
GAAATTAAAGTGGGATGGAC+TGG - chr1_1:29060906-29060925 Msa0017480:CDS 40.0%
GCCTGAAAGCTCAGAAATAT+CGG - chr1_1:29061002-29061021 Msa0017480:intron 40.0%
! TCCGATATTTCTGAGCTTTC+AGG + chr1_1:29061006-29061025 None:intergenic 40.0%
TGAAGACTGAATTGCAGCAA+TGG + chr1_1:29061052-29061071 None:intergenic 40.0%
AATTCAGTCTTCACTTCCAG+AGG - chr1_1:29061059-29061078 Msa0017480:intron 40.0%
!!! TCTGTTGCCTTTTTTACCTC+TGG + chr1_1:29061078-29061097 None:intergenic 40.0%
ACCAAAGAAGATTCTACCGA+AGG - chr1_1:29061201-29061220 Msa0017480:intron 40.0%
TCCTTCGGTAGAATCTTCTT+TGG + chr1_1:29061205-29061224 None:intergenic 40.0%
!!! AATGATCCATTTTCTGGGGT+AGG + chr1_1:29061267-29061286 None:intergenic 40.0%
CCCAGAAAATGGATCATTGT+TGG - chr1_1:29061269-29061288 Msa0017480:intron 40.0%
TAATGCATCCACTGATACAC+AGG - chr1_1:29061428-29061447 Msa0017480:intron 40.0%
ACAAAACACCTGTGTATCAG+TGG + chr1_1:29061439-29061458 None:intergenic 40.0%
AAGTGAACTCATTGATAGGG+AGG + chr1_1:29061464-29061483 None:intergenic 40.0%
AGGTTAGTGATTGCATTTCG+CGG - chr1_1:29061622-29061641 Msa0017480:intron 40.0%
GCAATGGAAGGACTTAGTAA+CGG - chr1_1:29061744-29061763 Msa0017480:intron 40.0%
AGTCATGCTCCTCAACAAAA+TGG - chr1_1:29061963-29061982 Msa0017480:intron 40.0%
TACCCGGTAAAAAAGTCAGA+AGG - chr1_1:29062172-29062191 Msa0017480:intron 40.0%
ACCCGGTAAAAAAGTCAGAA+GGG - chr1_1:29062173-29062192 Msa0017480:intron 40.0%
!!! TCCCTTCTGACTTTTTTACC+GGG + chr1_1:29062177-29062196 None:intergenic 40.0%
GTAAAATGCGGACAACAACA+AGG - chr1_1:29062226-29062245 Msa0017480:intron 40.0%
GAGATTCTTGTAACAAGGGA+CGG + chr1_1:29062328-29062347 None:intergenic 40.0%
CAAAATTAGCCCACCCAAAT+TGG - chr1_1:29062531-29062550 Msa0017480:intron 40.0%
AGTAGGCTATGCTATCTAAG+GGG - chr1_1:29062982-29063001 Msa0017480:intron 40.0%
!! GCACCAGAGGATCATTTTTA+AGG + chr1_1:29063009-29063028 None:intergenic 40.0%
AAATCTCCACCTATCCTTTC+AGG + chr1_1:29063138-29063157 None:intergenic 40.0%
GGTTCAAGTATGTTAGTTGC+TGG - chr1_1:29063167-29063186 Msa0017480:intron 40.0%
TCGGTGCATATGATTCAGTA+AGG - chr1_1:29063289-29063308 Msa0017480:intron 40.0%
! TCTCTGATTCGACTTGCAAT+TGG - chr1_1:29063324-29063343 Msa0017480:intron 40.0%
CATGGGTGTTTGACAATCAA+GGG + chr1_1:29063691-29063710 None:intergenic 40.0%
TCATGGGTGTTTGACAATCA+AGG + chr1_1:29063692-29063711 None:intergenic 40.0%
TGAGCATGAAATGTGGTATG+TGG - chr1_1:29063781-29063800 Msa0017480:intron 40.0%
! GGAGTATCAGGAAAGACAAT+TGG + chr1_1:29063912-29063931 None:intergenic 40.0%
! GCAATGCTTATTGGAGTATC+AGG + chr1_1:29063924-29063943 None:intergenic 40.0%
!! TAGGCATTGGCAATGCTTAT+TGG + chr1_1:29063933-29063952 None:intergenic 40.0%
GAACTCAGAATGATCATCTC+TGG + chr1_1:29064053-29064072 None:intergenic 40.0%
TGAAAGTTCAAGAGCAAGCA+AGG + chr1_1:29064131-29064150 None:intergenic 40.0%
AGTAATGCTTGGGATGATAC+AGG - chr1_1:29064304-29064323 Msa0017480:intron 40.0%
TCACCCACATTTCAAATGCA+TGG + chr1_1:29064636-29064655 None:intergenic 40.0%
AGTCTATTTATGCAGCCTCT+AGG + chr1_1:29064668-29064687 None:intergenic 40.0%
AAAAGGTGACACAGTGAATG+AGG + chr1_1:29064763-29064782 None:intergenic 40.0%
TTTACTATGAGGAGAGGTGA+CGG - chr1_1:29065071-29065090 Msa0017480:CDS 40.0%
AGTAAATCACTCTGAGCAGT+GGG + chr1_1:29065119-29065138 None:intergenic 40.0%
TAAGTGAGCACATAGTGTAC+AGG - chr1_1:29065365-29065384 Msa0017480:CDS 40.0%
!! GATTGATTTTTCGAACAGGC+GGG - chr1_1:29065730-29065749 Msa0017480:CDS 40.0%
!! ATTGATTTTTCGAACAGGCG+GGG - chr1_1:29065731-29065750 Msa0017480:CDS 40.0%
!!! AATTTTGGTTCTCCTAGGGT+TGG - chr1_1:29065776-29065795 Msa0017480:CDS 40.0%
GGCTCAATTATCAAAGCCAA+AGG + chr1_1:29066013-29066032 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr1_1:29066504-29066523 Msa0017480:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr1_1:29066506-29066525 Msa0017480:intron 40.0%
CCAGCCATAGTAGTTAATAG+CGG + chr1_1:29066553-29066572 None:intergenic 40.0%
ATCTGATGCCTTCATCTTAC+TGG + chr1_1:29066679-29066698 None:intergenic 40.0%
ACACTCACAAGATCAGAGTA+TGG + chr1_1:29066781-29066800 None:intergenic 40.0%
TACTCTGATCTTGTGAGTGT+AGG - chr1_1:29066781-29066800 Msa0017480:intron 40.0%
GGCTAGATATCTAGGAAATG+TGG + chr1_1:29067113-29067132 None:intergenic 40.0%
!! AAGTTGGCCATAGTCTTGTA+AGG + chr1_1:29067169-29067188 None:intergenic 40.0%
GTGAGTTTATGTTCCCATAG+GGG + chr1_1:29067227-29067246 None:intergenic 40.0%
GTGTGAGTTTATGTTCCCAT+AGG + chr1_1:29067229-29067248 None:intergenic 40.0%
ACATAAACTCACACTCTCTG+AGG - chr1_1:29067235-29067254 Msa0017480:intron 40.0%
TGCAGAAAGTGAAAGATAGC+TGG - chr1_1:29067637-29067656 Msa0017480:intron 40.0%
TGACAATAACCCATTAACCG+GGG + chr1_1:29067699-29067718 None:intergenic 40.0%
! CAACCTTTATTTCTTGCTGC+GGG - chr1_1:29067726-29067745 Msa0017480:intron 40.0%
! GGCCAATTAATTTGACAACC+TGG - chr1_1:29067880-29067899 Msa0017480:intron 40.0%
AATCATTTCGCCTACATACC+AGG + chr1_1:29067901-29067920 None:intergenic 40.0%
ATTTAAAAAAGGGCCCAACC+GGG + chr1_1:29068054-29068073 None:intergenic 40.0%
AGACATGATAAACTGAAGGC+AGG - chr1_1:29068311-29068330 Msa0017480:intron 40.0%
GACATGATAAACTGAAGGCA+GGG - chr1_1:29068312-29068331 Msa0017480:intron 40.0%
ACATGATAAACTGAAGGCAG+GGG - chr1_1:29068313-29068332 Msa0017480:intron 40.0%
AATCAAACGCACCCTAAAAG+TGG - chr1_1:29068383-29068402 Msa0017480:intron 40.0%
TTTAAAAAAAGGGCCCAACC+GGG - chr1_1:29068464-29068483 Msa0017480:intron 40.0%
TTTAAAAAAAGGGCCCAACC+GGG - chr1_1:29068464-29068483 Msa0017480:intron 40.0%
!! TTTTAAAAAAGGGCCCAACC+GGG - chr1_1:29068863-29068882 Msa0017480:intron 40.0%
AGGATAAGAACGTTAGCAGT+GGG + chr1_1:29068944-29068963 None:intergenic 40.0%
TAGGATAAGAACGTTAGCAG+TGG + chr1_1:29068945-29068964 None:intergenic 40.0%
!! ATTTTGGGAGATGGTTACGA+AGG - chr1_1:29069280-29069299 Msa0017480:intron 40.0%
GTTACGAAGGTGATGTTCTT+GGG - chr1_1:29069293-29069312 Msa0017480:intron 40.0%
TTACGAAGGTGATGTTCTTG+GGG - chr1_1:29069294-29069313 Msa0017480:intron 40.0%
! AACTCGTTGACTATGACATC+TGG + chr1_1:29069328-29069347 None:intergenic 40.0%
TATCCAGATGAAGGGTGAAA+TGG - chr1_1:29069824-29069843 Msa0017480:intron 40.0%
ATATTCCGCTCAATCAGAGA+TGG - chr1_1:29069882-29069901 Msa0017480:intron 40.0%
AAGTGCTTACATGCAGCATA+TGG - chr1_1:29069905-29069924 Msa0017480:intron 40.0%
TCACTCAAGAGAAAAACCTC+AGG - chr1_1:29069970-29069989 Msa0017480:intron 40.0%
GAATCACACAAGTAATCCTG+AGG + chr1_1:29069989-29070008 None:intergenic 40.0%
GGGAAGAACTCTTTGTCTAT+TGG - chr1_1:29070063-29070082 Msa0017480:intron 40.0%
CAAATTACCAAGTTGCCTCA+AGG - chr1_1:29070731-29070750 Msa0017480:intron 40.0%
TACATCTTGTTCTGACCTTG+AGG + chr1_1:29070749-29070768 None:intergenic 40.0%
CAGGATTGAGTCTAGCAAAT+TGG - chr1_1:29070962-29070981 Msa0017480:CDS 40.0%
TCTCAGCAGAGATTCGAATT+TGG + chr1_1:29071010-29071029 None:intergenic 40.0%
! CGTTAACGGAACCTTTTCAT+TGG - chr1_1:29071111-29071130 Msa0017480:CDS 40.0%
! AACGGAACCTTTTCATTGGA+TGG - chr1_1:29071115-29071134 Msa0017480:CDS 40.0%
TGGAAACCAGAAATACACTG+AGG + chr1_1:29071213-29071232 None:intergenic 40.0%
! ATATTGCACTGGTCCTAGAA+TGG + chr1_1:29071233-29071252 None:intergenic 40.0%
ACCAGTGCAATATGTTCCAA+GGG - chr1_1:29071240-29071259 Msa0017480:five_prime_UTR 40.0%
! CTTTACATGTATTGGCAGCA+AGG - chr1_1:29071412-29071431 Msa0017480:five_prime_UTR 40.0%
GGTGTGGAAGGTTTATGTAC+AGG + chr1_1:29055340-29055359 None:intergenic 45.0%
!! GAAGTGGGTTTTACGTGTAC+GGG + chr1_1:29055361-29055380 None:intergenic 45.0%
!! GGAAGTGGGTTTTACGTGTA+CGG + chr1_1:29055362-29055381 None:intergenic 45.0%
! GGGAAAGTGCGAGAAAATTG+AGG + chr1_1:29055570-29055589 None:intergenic 45.0%
!! GCAAGGTTGATATCAAACGG+AGG + chr1_1:29055753-29055772 None:intergenic 45.0%
GAATCGATCCTAAGACCTCA+AGG + chr1_1:29056018-29056037 None:intergenic 45.0%
TACCCTCTTACGAACTCCAT+TGG + chr1_1:29056488-29056507 None:intergenic 45.0%
CTAAACTAGCCCACCCAAAT+CGG - chr1_1:29056646-29056665 Msa0017480:intron 45.0%
!! ATTCTTCCCGATGCCGATTT+GGG + chr1_1:29056662-29056681 None:intergenic 45.0%
TAAAGGACCAGAGTGGTTGA+CGG - chr1_1:29057045-29057064 Msa0017480:intron 45.0%
! TCTAAGGGCGCAACAATGAA+GGG + chr1_1:29057512-29057531 None:intergenic 45.0%
TAGCTTCTTCCAAATCACGC+AGG - chr1_1:29057737-29057756 Msa0017480:intron 45.0%
GGTTGGATTTGCAGTGAGAA+TGG + chr1_1:29057778-29057797 None:intergenic 45.0%
ATGCAAAGACAACCAACCCA+TGG + chr1_1:29057926-29057945 None:intergenic 45.0%
TTCGTTATTCCAAGCCTAGC+AGG - chr1_1:29058223-29058242 Msa0017480:intron 45.0%
ATTCCAAGCCTAGCAGGTAA+TGG - chr1_1:29058229-29058248 Msa0017480:intron 45.0%
TAACCATTACCTGCTAGGCT+TGG + chr1_1:29058235-29058254 None:intergenic 45.0%
GCAAATGCAAGGATAGTCTG+AGG + chr1_1:29058345-29058364 None:intergenic 45.0%
GTGAACTCCTCATTCCATGT+TGG + chr1_1:29058621-29058640 None:intergenic 45.0%
ACATGCCAATGTGTGTGTGT+GGG + chr1_1:29058724-29058743 None:intergenic 45.0%
GGAAAGGATTCTCACAAGTG+TGG + chr1_1:29058747-29058766 None:intergenic 45.0%
TGTCGCTAGATTTAGTGCTC+TGG - chr1_1:29058998-29059017 Msa0017480:CDS 45.0%
! TCTGGCTGAGTATTGTGCTA+CGG - chr1_1:29059016-29059035 Msa0017480:CDS 45.0%
AATCTATGTTCTCCACCCTG+AGG - chr1_1:29059332-29059351 Msa0017480:intron 45.0%
ATCTATGTTCTCCACCCTGA+GGG - chr1_1:29059333-29059352 Msa0017480:intron 45.0%
CTCAGTACAGGTGTTCCATA+AGG + chr1_1:29059505-29059524 None:intergenic 45.0%
CTTATGGAACACCTGTACTG+AGG - chr1_1:29059503-29059522 Msa0017480:intron 45.0%
GCATGAAATACTGGTGGAGT+TGG - chr1_1:29059944-29059963 Msa0017480:intron 45.0%
GAAATACTGGTGGAGTTGGA+AGG - chr1_1:29059948-29059967 Msa0017480:intron 45.0%
TCTGCACTCAGAAAGGTTAC+TGG - chr1_1:29060532-29060551 Msa0017480:intron 45.0%
! AACTCTTCCTCACTAGCTTG+TGG + chr1_1:29060805-29060824 None:intergenic 45.0%
GACTGAATTGCAGCAATGGA+AGG + chr1_1:29061048-29061067 None:intergenic 45.0%
!! AAAGGCGTTCTTCTGAAGAG+AGG - chr1_1:29061175-29061194 Msa0017480:intron 45.0%
GAAGATTCTACCGAAGGAGT+AGG - chr1_1:29061207-29061226 Msa0017480:intron 45.0%
AATGTCACTGCCTACTCCTT+CGG + chr1_1:29061220-29061239 None:intergenic 45.0%
AAGTCTCCTACCCCAGAAAA+TGG - chr1_1:29061258-29061277 Msa0017480:intron 45.0%
!! TTCAACTGCTGAAAGTGCCA+TGG - chr1_1:29061326-29061345 Msa0017480:intron 45.0%
ACAATGCTGTCCACTTCACT+AGG - chr1_1:29061357-29061376 Msa0017480:intron 45.0%
ACTTGGATGACCTAGTGAAG+TGG + chr1_1:29061370-29061389 None:intergenic 45.0%
CATAGTACTGTTCTGCCATC+TGG - chr1_1:29061684-29061703 Msa0017480:intron 45.0%
GATCTAATGCTTGTTCCAGC+CGG - chr1_1:29061766-29061785 Msa0017480:intron 45.0%
ATCTAATGCTTGTTCCAGCC+GGG - chr1_1:29061767-29061786 Msa0017480:intron 45.0%
AGAAATGAATGTTACCCGGC+TGG + chr1_1:29061784-29061803 None:intergenic 45.0%
TTCTTGTAACAAGGGACGGA+TGG + chr1_1:29062324-29062343 None:intergenic 45.0%
GAATCGAACATGAGACCTTG+AGG - chr1_1:29062564-29062583 Msa0017480:CDS 45.0%
GGCCCTTAAAAATGATCCTC+TGG - chr1_1:29063003-29063022 Msa0017480:intron 45.0%
! ATGATTTTGAGCAGCACCAG+AGG + chr1_1:29063022-29063041 None:intergenic 45.0%
TCCATAGGCTGAATCCTGAA+AGG - chr1_1:29063121-29063140 Msa0017480:intron 45.0%
TCCTTTCAGGATTCAGCCTA+TGG + chr1_1:29063125-29063144 None:intergenic 45.0%
AGGCTGAATCCTGAAAGGAT+AGG - chr1_1:29063126-29063145 Msa0017480:intron 45.0%
CTGAATCCTGAAAGGATAGG+TGG - chr1_1:29063129-29063148 Msa0017480:intron 45.0%
AGGTGGAGATTTCAAGCAAG+AGG - chr1_1:29063146-29063165 Msa0017480:intron 45.0%
CAAGTATGTTAGTTGCTGGC+AGG - chr1_1:29063171-29063190 Msa0017480:intron 45.0%
! GTTAGTTGCTGGCAGGTTTT+TGG - chr1_1:29063178-29063197 Msa0017480:intron 45.0%
AGATCTTTGCAGGTTCACAG+TGG - chr1_1:29063261-29063280 Msa0017480:intron 45.0%
GTTACTGGTCATAGTTTGGG+TGG - chr1_1:29064094-29064113 Msa0017480:intron 45.0%
GAGTAAATCACTCTGAGCAG+TGG + chr1_1:29065120-29065139 None:intergenic 45.0%
AGTTAATAGCGGCGCTATAG+CGG - chr1_1:29066047-29066066 Msa0017480:CDS 45.0%
TATCTCATAACGCTACGCCT+TGG + chr1_1:29066123-29066142 None:intergenic 45.0%
AAAACCGCTATGCAGTGTTG+CGG + chr1_1:29066161-29066180 None:intergenic 45.0%
CAGATGCGTACAGATCTGAA+AGG + chr1_1:29066316-29066335 None:intergenic 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr1_1:29066511-29066530 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr1_1:29066512-29066531 None:intergenic 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - chr1_1:29066510-29066529 Msa0017480:intron 45.0%
CCGCTATTAACTACTATGGC+TGG - chr1_1:29066550-29066569 Msa0017480:intron 45.0%
CACACCCACGATCTGTTATT+GGG - chr1_1:29067017-29067036 Msa0017480:CDS 45.0%
AGTGCCCAATAACAGATCGT+GGG + chr1_1:29067024-29067043 None:intergenic 45.0%
AAGTGCCCAATAACAGATCG+TGG + chr1_1:29067025-29067044 None:intergenic 45.0%
CTGGCGAATTGTGAATCACA+GGG - chr1_1:29067656-29067675 Msa0017480:intron 45.0%
ACCTACAATACCCCGGTTAA+TGG - chr1_1:29067686-29067705 Msa0017480:intron 45.0%
CCTACAATACCCCGGTTAAT+GGG - chr1_1:29067687-29067706 Msa0017480:intron 45.0%
ACTCCCGCAGCAAGAAATAA+AGG + chr1_1:29067732-29067751 None:intergenic 45.0%
AATGCTCTACCACTGAGCTA+TGG + chr1_1:29068598-29068617 None:intergenic 45.0%
GCATTTGACTGCAGATCAAG+AGG - chr1_1:29068015-29068034 Msa0017480:intron 45.0%
!! GGCTCAAAGAGCACTTACAA+AGG + chr1_1:29068119-29068138 None:intergenic 45.0%
! AGAAATTTAGGGTGAGGGGA+TGG + chr1_1:29068171-29068190 None:intergenic 45.0%
!! AAAAATCACCGGTTCGAACC+CGG + chr1_1:29068485-29068504 None:intergenic 45.0%
GCATTTGACTGCAGATCAAG+AGG + chr1_1:29068015-29068034 None:intergenic 45.0%
AATGCTCTACCACTGAGCTA+TGG - chr1_1:29068598-29068617 Msa0017480:intron 45.0%
TGGATCAGAATGCCAACAGT+GGG + chr1_1:29068625-29068644 None:intergenic 45.0%
TTGGATCAGAATGCCAACAG+TGG + chr1_1:29068626-29068645 None:intergenic 45.0%
GCATTTGACTGCAGATCAAG+AGG + chr1_1:29068015-29068034 None:intergenic 45.0%
AATGCTCTACCACTGAGCTA+TGG - chr1_1:29068598-29068617 Msa0017480:intron 45.0%
GGTTACGAAGGTGATGTTCT+TGG - chr1_1:29069292-29069311 Msa0017480:intron 45.0%
GTTGACTATGACATCTGGTG+TGG + chr1_1:29069323-29069342 None:intergenic 45.0%
AACCAGGAGTTATAGTTCCG+AGG + chr1_1:29069654-29069673 None:intergenic 45.0%
GTGATTATAGCAGCAGAACC+AGG + chr1_1:29069670-29069689 None:intergenic 45.0%
GTTCCATTTCACCCTTCATC+TGG + chr1_1:29069830-29069849 None:intergenic 45.0%
CACTTCCATCTCTGATTGAG+CGG + chr1_1:29069890-29069909 None:intergenic 45.0%
TGCTTACATGCAGCATATGG+AGG - chr1_1:29069908-29069927 Msa0017480:intron 45.0%
CAGCTTATACTGAGCCAACA+AGG - chr1_1:29070774-29070793 Msa0017480:intron 45.0%
GCACAGTCGGACAATACATA+TGG + chr1_1:29071044-29071063 None:intergenic 45.0%
GCATCACCTCAGTGTATTTC+TGG - chr1_1:29071204-29071223 Msa0017480:five_prime_UTR 45.0%
GACCAGTGCAATATGTTCCA+AGG - chr1_1:29071239-29071258 Msa0017480:five_prime_UTR 45.0%
TCCCTTGGAACATATTGCAC+TGG + chr1_1:29071244-29071263 None:intergenic 45.0%
!! ATTTATATAAAATTATTTGA+TGG - chr1_1:29058582-29058601 Msa0017480:intron 5.0%
!!! CAAAAATTTAATTTAAAAAA+GGG + chr1_1:29068064-29068083 None:intergenic 5.0%
!!! TTTTTTATATTGTAAAAAAA+AGG - chr1_1:29068765-29068784 Msa0017480:intron 5.0%
!!! TAAAAAATTGATTTTAAAAA+AGG - chr1_1:29068852-29068871 Msa0017480:CDS 5.0%
!!! AAAAAATTGATTTTAAAAAA+GGG - chr1_1:29068853-29068872 Msa0017480:CDS 5.0%
! CAGGAAATGGTGGTTGGTTC+TGG + chr1_1:29055321-29055340 None:intergenic 50.0%
TTTACGTGTACGGGTGTGGA+AGG + chr1_1:29055352-29055371 None:intergenic 50.0%
ATGTGTCACACGTGTGTGAG+TGG + chr1_1:29055504-29055523 None:intergenic 50.0%
GCGTGGAGTTTGGAGAGTAA+CGG + chr1_1:29055545-29055564 None:intergenic 50.0%
! TCAAGGAAGAGCACACTCTC+AGG + chr1_1:29056001-29056020 None:intergenic 50.0%
! TGAGAGTGTGCTCTTCCTTG+AGG - chr1_1:29056000-29056019 Msa0017480:intron 50.0%
GTGCTCTTCCTTGAGGTCTT+AGG - chr1_1:29056007-29056026 Msa0017480:intron 50.0%
! GATTCTTCCCGATGCCGATT+TGG + chr1_1:29056663-29056682 None:intergenic 50.0%
CTTCGAGTGTGCTTCTCTCA+AGG + chr1_1:29056696-29056715 None:intergenic 50.0%
! CTTGAGAGAAGCACACTCGA+AGG - chr1_1:29056694-29056713 Msa0017480:intron 50.0%
GGTTGACGGAGGAAGAGTTA+AGG - chr1_1:29057059-29057078 Msa0017480:intron 50.0%
GCGCAACAATGAAGGGAAAC+TGG + chr1_1:29057505-29057524 None:intergenic 50.0%
! CTCTAAGGGCGCAACAATGA+AGG + chr1_1:29057513-29057532 None:intergenic 50.0%
ACAACCAACCCATGGATCCA+TGG + chr1_1:29057918-29057937 None:intergenic 50.0%
GGGAACAAGTGATCCGTATG+TGG - chr1_1:29058112-29058131 Msa0017480:intron 50.0%
TCCGTATGTGGTCCTACAGA+TGG - chr1_1:29058124-29058143 Msa0017480:intron 50.0%
CCCATCTGTAGGACCACATA+CGG + chr1_1:29058128-29058147 None:intergenic 50.0%
CCGTATGTGGTCCTACAGAT+GGG - chr1_1:29058125-29058144 Msa0017480:intron 50.0%
CAGTCTGAGAACCCATCTGT+AGG + chr1_1:29058139-29058158 None:intergenic 50.0%
GCAGGACAAAAGAGCCAACA+TGG - chr1_1:29058604-29058623 Msa0017480:intron 50.0%
GACATGCCAATGTGTGTGTG+TGG + chr1_1:29058725-29058744 None:intergenic 50.0%
AGGGCCCTGAGAGATGTATT+GGG + chr1_1:29059280-29059299 None:intergenic 50.0%
TCTATGTTCTCCACCCTGAG+GGG - chr1_1:29059334-29059353 Msa0017480:intron 50.0%
AACTCTAACACTCCCCCTCA+GGG + chr1_1:29059350-29059369 None:intergenic 50.0%
TGCGTTTGTGAGGGGTTACA+AGG + chr1_1:29059664-29059683 None:intergenic 50.0%
TGTAACCCCTCACAAACGCA+TGG - chr1_1:29059664-29059683 Msa0017480:intron 50.0%
GTAACCCCTCACAAACGCAT+GGG - chr1_1:29059665-29059684 Msa0017480:intron 50.0%
TAACCCCTCACAAACGCATG+GGG - chr1_1:29059666-29059685 Msa0017480:intron 50.0%
ATTCCCCATGCGTTTGTGAG+GGG + chr1_1:29059672-29059691 None:intergenic 50.0%
CATTCCCCATGCGTTTGTGA+GGG + chr1_1:29059673-29059692 None:intergenic 50.0%
! GGGGAATGCAGTCGTTGATT+TGG - chr1_1:29059685-29059704 Msa0017480:intron 50.0%
!! GGAATGGCTTTGTGATGGTG+AGG - chr1_1:29059706-29059725 Msa0017480:intron 50.0%
ACTGGTGGAGTTGGAAGGAA+TGG - chr1_1:29059953-29059972 Msa0017480:intron 50.0%
CTGGTGGAGTTGGAAGGAAT+GGG - chr1_1:29059954-29059973 Msa0017480:intron 50.0%
GAGTTGGAAGGAATGGGTAG+TGG - chr1_1:29059960-29059979 Msa0017480:intron 50.0%
! TTGGAAGGAATGGGTAGTGG+TGG - chr1_1:29059963-29059982 Msa0017480:intron 50.0%
AGCATCACCACAAGCTAGTG+AGG - chr1_1:29060795-29060814 Msa0017480:intron 50.0%
!! AACTGCTGAAAGTGCCATGG+AGG - chr1_1:29061329-29061348 Msa0017480:intron 50.0%
TGCATTTCGCGGAACAGAAC+AGG - chr1_1:29061633-29061652 Msa0017480:intron 50.0%
TCTCATGTTCGATTCTCCCC+CGG + chr1_1:29062559-29062578 None:intergenic 50.0%
TCGAACATGAGACCTTGAGG+AGG - chr1_1:29062567-29062586 Msa0017480:CDS 50.0%
!! TGGCCTTGTGGTGTTAGCTT+GGG + chr1_1:29062608-29062627 None:intergenic 50.0%
!! TTGGCCTTGTGGTGTTAGCT+TGG + chr1_1:29062609-29062628 None:intergenic 50.0%
CCATGTTCCTACTCCCACTT+GGG + chr1_1:29062632-29062651 None:intergenic 50.0%
CCAAGTGGGAGTAGGAACAT+GGG - chr1_1:29062630-29062649 Msa0017480:CDS 50.0%
! GATGGTGCTGAGATCTTTGC+AGG - chr1_1:29063251-29063270 Msa0017480:intron 50.0%
CAGGTTCACAGTGGCTTTCT+CGG - chr1_1:29063270-29063289 Msa0017480:intron 50.0%
TCATAGTTTGGGTGGTGCCT+TGG - chr1_1:29064102-29064121 Msa0017480:intron 50.0%
AAGAGCAAGCAAGGTAGCCA+AGG + chr1_1:29064122-29064141 None:intergenic 50.0%
TGAAATGTGGGTGAGCCTTG+TGG - chr1_1:29064642-29064661 Msa0017480:intron 50.0%
! GGCTTTGATAATTGAGCCGC+TGG - chr1_1:29066015-29066034 Msa0017480:CDS 50.0%
GACCGCTATGCAATAAGCCA+AGG - chr1_1:29066103-29066122 Msa0017480:CDS 50.0%
CGCCTTGGCTTATTGCATAG+CGG + chr1_1:29066108-29066127 None:intergenic 50.0%
GGCGTAGCGTTATGAGATAG+CGG - chr1_1:29066124-29066143 Msa0017480:CDS 50.0%
! ATGAGATAGCGGCGCAATAG+CGG - chr1_1:29066135-29066154 Msa0017480:CDS 50.0%
GAAATAGCGGTCATAGCGCT+AGG - chr1_1:29066479-29066498 Msa0017480:intron 50.0%
CCAATAACAGATCGTGGGTG+TGG + chr1_1:29067019-29067038 None:intergenic 50.0%
CCACACCCACGATCTGTTAT+TGG - chr1_1:29067016-29067035 Msa0017480:CDS 50.0%
GCTGGCGAATTGTGAATCAC+AGG - chr1_1:29067655-29067674 Msa0017480:intron 50.0%
!! CCCATTAACCGGGGTATTGT+AGG + chr1_1:29067690-29067709 None:intergenic 50.0%
CTGAGCTATGGACCCAATGT+TGG + chr1_1:29067988-29068007 None:intergenic 50.0%
ACATTGGGTCCATAGCTCAG+TGG - chr1_1:29067988-29068007 Msa0017480:intron 50.0%
ACTGCAGATCAAGAGGTCAC+CGG - chr1_1:29068022-29068041 Msa0017480:intron 50.0%
TAAGTGCTCTTTGAGCCCGA+AGG - chr1_1:29068122-29068141 Msa0017480:intron 50.0%
ACTGCAGATCAAGAGGTCAC+CGG + chr1_1:29068022-29068041 None:intergenic 50.0%
ACTGCAGATCAAGAGGTCAC+TGG + chr1_1:29068022-29068041 None:intergenic 50.0%
GAGTTATAGTTCCGAGGTGC+GGG + chr1_1:29069648-29069667 None:intergenic 50.0%
GGAGTTATAGTTCCGAGGTG+CGG + chr1_1:29069649-29069668 None:intergenic 50.0%
CACCTCGGAACTATAACTCC+TGG - chr1_1:29069649-29069668 Msa0017480:intron 50.0%
GTTCTGACCTTGAGGCAACT+TGG + chr1_1:29070741-29070760 None:intergenic 50.0%
GTACATGGACCTCATCTGTC+TGG + chr1_1:29070816-29070835 None:intergenic 50.0%
GAATCTCTGCTGAGACTGAG+AGG - chr1_1:29071015-29071034 Msa0017480:CDS 50.0%
AGGGAAATGACTACTCGGCA+CGG - chr1_1:29071342-29071361 Msa0017480:five_prime_UTR 50.0%
! GGGTTTTACGTGTACGGGTG+TGG + chr1_1:29055356-29055375 None:intergenic 55.0%
! AATTGAGGGCGCGTGGAGTT+TGG + chr1_1:29055555-29055574 None:intergenic 55.0%
TAGCCCACCCAAATCGGCAT+CGG - chr1_1:29056652-29056671 Msa0017480:intron 55.0%
!! TTCCCGATGCCGATTTGGGT+GGG + chr1_1:29056658-29056677 None:intergenic 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + chr1_1:29056721-29056740 None:intergenic 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + chr1_1:29056722-29056741 None:intergenic 55.0%
!! TTGGGTTGGCCTGATGGTGT+TGG + chr1_1:29056727-29056746 None:intergenic 55.0%
ACCATCAGGCCAACCCAAGT+GGG - chr1_1:29056729-29056748 Msa0017480:intron 55.0%
TCTTCCTCCGTCAACCACTC+TGG + chr1_1:29057055-29057074 None:intergenic 55.0%
ACCAACCCATGGATCCATGG+CGG + chr1_1:29057915-29057934 None:intergenic 55.0%
GTCGGCGATGAAACCTCTAC+AGG - chr1_1:29058656-29058675 Msa0017480:intron 55.0%
GTGCACCCACACACACACAT+TGG - chr1_1:29058716-29058735 Msa0017480:intron 55.0%
GAGGGCCCTGAGAGATGTAT+TGG + chr1_1:29059281-29059300 None:intergenic 55.0%
CTATGTTCTCCACCCTGAGG+GGG - chr1_1:29059335-29059354 Msa0017480:intron 55.0%
GAACTCTAACACTCCCCCTC+AGG + chr1_1:29059351-29059370 None:intergenic 55.0%
GCATTCCCCATGCGTTTGTG+AGG + chr1_1:29059674-29059693 None:intergenic 55.0%
! GGCTTTGTGATGGTGAGGAC+TGG - chr1_1:29059711-29059730 Msa0017480:intron 55.0%
! AGGAATGGGTAGTGGTGGAG+AGG - chr1_1:29059968-29059987 Msa0017480:intron 55.0%
! TGGGTAGTGGTGGAGAGGTT+TGG - chr1_1:29059973-29059992 Msa0017480:intron 55.0%
! TAGTGGTGGAGAGGTTTGGC+TGG - chr1_1:29059977-29059996 Msa0017480:intron 55.0%
!! CTGAAAGTGCCATGGAGGCT+TGG - chr1_1:29061334-29061353 Msa0017480:intron 55.0%
CAGCATTGTCCAAGCCTCCA+TGG + chr1_1:29061346-29061365 None:intergenic 55.0%
GGCGTGATTCTGCACGAAGA+AGG - chr1_1:29061602-29061621 Msa0017480:intron 55.0%
TAGCCCACCCAAATTGGCAC+CGG - chr1_1:29062537-29062556 Msa0017480:intron 55.0%
! TTCTCCCCCGGTGCCAATTT+GGG + chr1_1:29062547-29062566 None:intergenic 55.0%
! ATTCTCCCCCGGTGCCAATT+TGG + chr1_1:29062548-29062567 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr1_1:29062582-29062601 None:intergenic 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr1_1:29062581-29062600 Msa0017480:CDS 55.0%
! GTGGTGTTAGCTTGGGACCT+TGG + chr1_1:29062601-29062620 None:intergenic 55.0%
GGTCCCAAGCTAACACCACA+AGG - chr1_1:29062602-29062621 Msa0017480:CDS 55.0%
ACCACAAGGCCAACCCAAGT+GGG - chr1_1:29062616-29062635 Msa0017480:CDS 55.0%
GTTCCTACTCCCACTTGGGT+TGG + chr1_1:29062628-29062647 None:intergenic 55.0%
CCCAAGTGGGAGTAGGAACA+TGG - chr1_1:29062629-29062648 Msa0017480:CDS 55.0%
CCCATGTTCCTACTCCCACT+TGG + chr1_1:29062633-29062652 None:intergenic 55.0%
TATGCAGCCTCTAGGCCACA+AGG + chr1_1:29064660-29064679 None:intergenic 55.0%
! CTTTTCGCAGGGAAGCCTCT+AGG - chr1_1:29064686-29064705 Msa0017480:intron 55.0%
GGCTTATTGCATAGCGGTCC+TGG + chr1_1:29066102-29066121 None:intergenic 55.0%
GTGTTGCACTGCTGCAACGA+AGG + chr1_1:29067054-29067073 None:intergenic 55.0%
TCCAAGGCAGGAAGACCTTC+GGG + chr1_1:29068140-29068159 None:intergenic 55.0%
GTCCAAGGCAGGAAGACCTT+CGG + chr1_1:29068141-29068160 None:intergenic 55.0%
AGGTCTTCCTGCCTTGGACT+AGG - chr1_1:29068142-29068161 Msa0017480:intron 55.0%
ACAGTGGGTCCATAGCTCAG+TGG + chr1_1:29068610-29068629 None:intergenic 55.0%
CTGAGCTATGGACCCACTGT+TGG - chr1_1:29068610-29068629 Msa0017480:intron 55.0%
!! TCACTGGTTCGAACCCGGTT+GGG + chr1_1:29068879-29068898 None:intergenic 55.0%
!! AGAGGTCACTGGTTCGAACC+CGG + chr1_1:29068884-29068903 None:intergenic 55.0%
ATCATTTGGCACCCGCACCT+CGG - chr1_1:29069634-29069653 Msa0017480:intron 55.0%
ACTGAGCCAACAAGGTCTCG+TGG - chr1_1:29070782-29070801 Msa0017480:intron 55.0%
TTGCAGCCACGAGACCTTGT+TGG + chr1_1:29070791-29070810 None:intergenic 55.0%
AACAAGGTCTCGTGGCTGCA+AGG - chr1_1:29070790-29070809 Msa0017480:intron 55.0%
AACAAAGGCAGCTGCTCCCT+TGG + chr1_1:29071259-29071278 None:intergenic 55.0%
! GCGAGAAAATTGAGGGCGCG+TGG + chr1_1:29055562-29055581 None:intergenic 60.0%
AGCCCACCCAAATCGGCATC+GGG - chr1_1:29056653-29056672 Msa0017480:intron 60.0%
!! CTTCCCGATGCCGATTTGGG+TGG + chr1_1:29056659-29056678 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG - chr1_1:29056715-29056734 Msa0017480:intron 60.0%
CACCATCAGGCCAACCCAAG+TGG - chr1_1:29056728-29056747 Msa0017480:intron 60.0%
!! ACCCACTTGGGTTGGCCTGA+TGG + chr1_1:29056733-29056752 None:intergenic 60.0%
AGGACCAGAGTGGTTGACGG+AGG - chr1_1:29057048-29057067 Msa0017480:intron 60.0%
AGGCGTGAAGTCGATGCTGC+TGG - chr1_1:29057448-29057467 Msa0017480:intron 60.0%
CACGGTGAGCCTGCGTGATT+TGG + chr1_1:29057749-29057768 None:intergenic 60.0%
CTTCCCCGCCATGGATCCAT+GGG - chr1_1:29057907-29057926 Msa0017480:intron 60.0%
CAACCCATGGATCCATGGCG+GGG + chr1_1:29057913-29057932 None:intergenic 60.0%
CCAACCCATGGATCCATGGC+GGG + chr1_1:29057914-29057933 None:intergenic 60.0%
TCTAACACTCCCCCTCAGGG+TGG + chr1_1:29059347-29059366 None:intergenic 60.0%
TGGTGGAGAGGTTTGGCTGG+AGG - chr1_1:29059980-29059999 Msa0017480:intron 60.0%
AGCCCACCCAAATTGGCACC+GGG - chr1_1:29062538-29062557 Msa0017480:intron 60.0%
CACCACAAGGCCAACCCAAG+TGG - chr1_1:29062615-29062634 Msa0017480:CDS 60.0%
!! TCCCACTTGGGTTGGCCTTG+TGG + chr1_1:29062620-29062639 None:intergenic 60.0%
AGGCCAACCCAAGTGGGAGT+AGG - chr1_1:29062622-29062641 Msa0017480:CDS 60.0%
GGCGCTATAGCGGCCAATAG+CGG - chr1_1:29066057-29066076 Msa0017480:CDS 60.0%
!! AGAGGTCACCGGTTCGAACC+CGG - chr1_1:29068033-29068052 Msa0017480:intron 60.0%
!! TCACCGGTTCGAACCCGGTT+GGG - chr1_1:29068038-29068057 Msa0017480:intron 60.0%
ATGGCGTCCTAGTCCAAGGC+AGG + chr1_1:29068152-29068171 None:intergenic 60.0%
!! TCACCGGTTCGAACCCGGTT+GGG + chr1_1:29068038-29068057 None:intergenic 60.0%
!! ATCACCGGTTCGAACCCGGT+TGG + chr1_1:29068481-29068500 None:intergenic 60.0%
!! TCACCGGTTCGAACCCGGTT+GGG + chr1_1:29068038-29068057 None:intergenic 60.0%
!! AGAGGTCACCGGTTCGAACC+CGG + chr1_1:29068033-29068052 None:intergenic 60.0%
!! GTCACTGGTTCGAACCCGGT+TGG + chr1_1:29068880-29068899 None:intergenic 60.0%
GCAGTGGGTCCATAGCTCAG+TGG + chr1_1:29068929-29068948 None:intergenic 60.0%
GCGCGCGAGTGCATATGAAC+AGG + chr1_1:29069384-29069403 None:intergenic 60.0%
GCTGCAAGGCCAGACAGATG+AGG - chr1_1:29070804-29070823 Msa0017480:intron 60.0%
AGGATCCAGCTTCCCCGCCA+TGG - chr1_1:29057898-29057917 Msa0017480:intron 65.0%
! TGGATCCATGGCGGGGAAGC+TGG + chr1_1:29057906-29057925 None:intergenic 65.0%
GCTTCCCCGCCATGGATCCA+TGG - chr1_1:29057906-29057925 Msa0017480:intron 65.0%
CCCGCCATGGATCCATGGGT+TGG - chr1_1:29057911-29057930 Msa0017480:intron 65.0%
GCCCACCCAAATTGGCACCG+GGG - chr1_1:29062539-29062558 Msa0017480:intron 65.0%
! CCCCCGGTGCCAATTTGGGT+GGG + chr1_1:29062543-29062562 None:intergenic 65.0%
! CCCACCCAAATTGGCACCGG+GGG - chr1_1:29062540-29062559 Msa0017480:intron 65.0%
! TCCCCCGGTGCCAATTTGGG+TGG + chr1_1:29062544-29062563 None:intergenic 65.0%
! GGGTGAGCCTTGTGGCCTAG+AGG - chr1_1:29064650-29064669 Msa0017480:intron 65.0%
GCGGCCGCAACACTGCATAG+CGG - chr1_1:29066154-29066173 Msa0017480:CDS 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG + chr1_1:29066536-29066555 None:intergenic 65.0%
!! GTCACCGGTTCGAACCCGGT+TGG - chr1_1:29068037-29068056 Msa0017480:intron 65.0%
GCCCGAAGGTCTTCCTGCCT+TGG - chr1_1:29068136-29068155 Msa0017480:intron 65.0%
GGGGATGGCGTCCTAGTCCA+AGG + chr1_1:29068156-29068175 None:intergenic 65.0%
!! GTCACCGGTTCGAACCCGGT+TGG + chr1_1:29068037-29068056 None:intergenic 65.0%
GGGCCCAACCGGGTTCGAAC+CGG + chr1_1:29068474-29068493 None:intergenic 70.0%
GGGCCCAACCGGGTTCGAAC+CGG - chr1_1:29068474-29068493 Msa0017480:intron 70.0%
GGGCCCAACCGGGTTCGAAC+CGG - chr1_1:29068474-29068493 Msa0017480:intron 70.0%
AGCGGCCAATAGCGGCCGCG+CGG - chr1_1:29066065-29066084 Msa0017480:CDS 75.0%
CCAATAGCGGCCGCGCGGTG+CGG - chr1_1:29066070-29066089 Msa0017480:CDS 75.0%
! CCGCACCGCGCGGCCGCTAT+TGG + chr1_1:29066073-29066092 None:intergenic 80.0%
! CTGGACCGCACCGCACCGCG+CGG + chr1_1:29066083-29066102 None:intergenic 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG - chr1_1:29066075-29066094 Msa0017480:CDS 85.0%
! CGCGCGGTGCGGTGCGGTCC+AGG - chr1_1:29066081-29066100 Msa0017480:CDS 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29055253 29071466 29055253 ID=Msa0017480;Name=Msa0017480
chr1_1 mRNA 29055253 29071466 29055253 ID=Msa0017480-mRNA-1;Parent=Msa0017480;Name=Msa0017480-mRNA-1;_AED=0.19;_eAED=0.23;_QI=269|0.94|0.94|1|1|1|18|0|881
chr1_1 exon 29055253 29055399 29055253 ID=Msa0017480-mRNA-1:exon:9704;Parent=Msa0017480-mRNA-1
chr1_1 exon 29056763 29056888 29056763 ID=Msa0017480-mRNA-1:exon:9703;Parent=Msa0017480-mRNA-1
chr1_1 exon 29057371 29057451 29057371 ID=Msa0017480-mRNA-1:exon:9702;Parent=Msa0017480-mRNA-1
chr1_1 exon 29058952 29059077 29058952 ID=Msa0017480-mRNA-1:exon:9701;Parent=Msa0017480-mRNA-1
chr1_1 exon 29060890 29060971 29060890 ID=Msa0017480-mRNA-1:exon:9700;Parent=Msa0017480-mRNA-1
chr1_1 exon 29062552 29062665 29062552 ID=Msa0017480-mRNA-1:exon:9699;Parent=Msa0017480-mRNA-1
chr1_1 exon 29063367 29063446 29063367 ID=Msa0017480-mRNA-1:exon:9698;Parent=Msa0017480-mRNA-1
chr1_1 exon 29063546 29063591 29063546 ID=Msa0017480-mRNA-1:exon:9697;Parent=Msa0017480-mRNA-1
chr1_1 exon 29064931 29064977 29064931 ID=Msa0017480-mRNA-1:exon:9696;Parent=Msa0017480-mRNA-1
chr1_1 exon 29065065 29065127 29065065 ID=Msa0017480-mRNA-1:exon:9695;Parent=Msa0017480-mRNA-1
chr1_1 exon 29065270 29066280 29065270 ID=Msa0017480-mRNA-1:exon:9694;Parent=Msa0017480-mRNA-1
chr1_1 exon 29066718 29066782 29066718 ID=Msa0017480-mRNA-1:exon:9693;Parent=Msa0017480-mRNA-1
chr1_1 exon 29066997 29067078 29066997 ID=Msa0017480-mRNA-1:exon:9692;Parent=Msa0017480-mRNA-1
chr1_1 exon 29068042 29068111 29068042 ID=Msa0017480-mRNA-1:exon:9691;Parent=Msa0017480-mRNA-1
chr1_1 exon 29068539 29068606 29068539 ID=Msa0017480-mRNA-1:exon:9690;Parent=Msa0017480-mRNA-1
chr1_1 exon 29068791 29068872 29068791 ID=Msa0017480-mRNA-1:exon:9689;Parent=Msa0017480-mRNA-1
chr1_1 exon 29069225 29069283 29069225 ID=Msa0017480-mRNA-1:exon:9688;Parent=Msa0017480-mRNA-1
chr1_1 exon 29070901 29071466 29070901 ID=Msa0017480-mRNA-1:exon:9687;Parent=Msa0017480-mRNA-1
chr1_1 five_prime_UTR 29071198 29071466 29071198 ID=Msa0017480-mRNA-1:five_prime_utr;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29070901 29071197 29070901 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29069225 29069283 29069225 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29068791 29068872 29068791 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29068539 29068606 29068539 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29068042 29068111 29068042 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29066997 29067078 29066997 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29066718 29066782 29066718 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29065270 29066280 29065270 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29065065 29065127 29065065 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29064931 29064977 29064931 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29063546 29063591 29063546 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29063367 29063446 29063367 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29062552 29062665 29062552 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29060890 29060971 29060890 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29058952 29059077 29058952 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29057371 29057451 29057371 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29056763 29056888 29056763 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
chr1_1 CDS 29055253 29055399 29055253 ID=Msa0017480-mRNA-1:cds;Parent=Msa0017480-mRNA-1
Gene Sequence

>Msa0017480

ATGATGAACTCTCTTCAATTCCGTTACTCTCCAAACTCCACGCGCCCTCAATTTTCTCGCACTTTCCCGCCTCACTATAATTTTCCACCAAAATTTCGGTTTCTATCTTTACCAAGATTCAACGGAAGAATCAGAAGAAGAAGAAGAAAGCAAGGTTTCTCAATCTGTTGTTCGTCGAAAACCGGTTCTCAGATTGAAAAGAGTTCTATTGAGAAAAACGATGAAAGGCCTCCGTTTGATATCAACCTTGCTGTTATTCTTGCTGGTTTCGCTTTTGAAGCTTACACTACTCCTCCTGAAAACTTGGGTAGGCGTGAAGTCGATGCTGCTGGTACCAAGACAATCTATCTTTCTGAGGAATTTTTCCGTGAAATTTATGATGGGCAACTCTTCATAAAGTTGAAAAAAGGATCCAGCTTCCCCGCCATGGATCCATGGGGAACAAGTGATCCGTATGTGGTCCTACAGATGGGTTCTCAGACTGCTAAAAGCAATATCAAATGGGGGACAAAAGAGCCAACATGGAATGAGGAGTTCACTTTTAATTTTAAGCGGTCGGCGATGAAACCTCTACAGGTTGCAGCTTGGGATGCAAACCTTGTAACCCCTCACAAACGCATGGGGAATGCAGTCGTTGATTTGGAATGGCTTTGTGATGGAGATACGCATGAAATACTGGTGGAGTTGGAAGGAATGGGTAGTGGTGGAGAGGTTTGGCTGGAGGTCAAATATAAGACCTTTGAAGAAATTGATGATGAAAAAAAGTGGTGGAGGATACCTTTTGTTTCAGACTTTTTAAAGAATACTGGTTTTGATTCTGCACTCAGAAAGGTTACTGGTTCTGATACAGTCCAAGTCAGCCAATTTGTAGAATATGCATTCGGGCAGTTAAAGTCTTTTAACAATGAGAAGGTCCGGATGTCTGATACTGATAATGATAAATATGATATTGAAAGCTCTGGGAAATCAAATAATAATACTGGTAGTTCAGAAGCCTCTAATGAAGCTTCTAATGAACAAAGAAACATGGAAGAGTTTCTTTCATGTGACAGTGAAACTGAAAATGGACACGCTTTGGAAGCATCACCACAAGCTAGTGAGGAAGAGTTGTCAAATCAACGTTTTTGGAAGAATTTTTCTAAAGTTATCAATGCTAACGTTGTTCAAAAATTGGGTCTCTCTGTTCCTGAGAAATTAAAGTGGGATGGACTGGAGTTCCTAAACAAAATTGGTTCGCAGTCACAAGATGTTGCAGAAGATATTTATATTGAATCTGGTCTTGCAATGCCTGAAAGCTCAGAAATATCGGACAATAAAACAACTGGTCAACCTTCCATTGCTGCAATTCAGTCTTCACTTCCAGAGGTAAAAAAGGCAACAGAGACTTTGATGAAGCAAACTGAATCAATTTTAGGAGGTTTAATGCTTTTGACCGCAACAGTTTCCAAAATGAAAGATGAAAGGCGTTCTTCTGAAGAGAGGAAAACCAAAGAAGATTCTACCGAAGGAGTAGGCAGTGACATTCAATATTCTGCTAGTGAAAAGTCTCCTACCCCAGAAAATGGATCATTGTTGGAGGATAAAAAAACTGAAGAGATGAAAGCACTTTTTTCAACTGCTGAAAGTGCCATGGAGGCTTGGACAATGCTGTCCACTTCACTAGGTCATCCAAGTTTCATCAAGTCTGAGTTCGAAAAGATATGTTTCGTAGATAATGCATCCACTGATACACAGGTTGCAATTTGGCGTGATTCTGCACGAAGAAGGTTAGTGATTGCATTTCGCGGAACAGAACAGACGCAATGGAAGGACTTAGTAACGGATCTAATGCTTGTTCCAGCCGGGCTGAATCCTGAAAGGATAGGTGGAGATTTCAAGCAAGAGGTTCAAGTTCACAGTGGCTTTCTCGGTGCATATGATTCAGTAAGGACAAGGATCATTTCTCTGATTCGACTTGCAATTGGTTGTGTAGATGATCATTCTGAGTTCATCCACAAATGGCATATTTATGTTACTGGTCATAGTTTGGGTGGTGCCTTGGCTACCTTGCTTGCTCTTGAACTTTCATCACATCAATTAGCTAAGCGGGGAGCGATTTCTTTTACTATGTATAATTTTGGTTCTCCTAGGGTTGGTAACAAAAGATTTGCAGAGGTTTACAATGAGAAAGTGAAAGATAGCTGGCGAATTGTGAATCACAGGGATATCATACCTACAATACCCCGGTTAATGGGTTATTGTCATGTCAATCAACCTTTATTTCTTGCTGCGGGAGTTTCAACAAATTCCTTAGAAAATAAAGATATTTTGGGAGATGGTTACGAAGGTGATGTTCTTGGGGAATCCACACCAGATGTCATAGTCAACGAGTTTATGAAGGGTGAAATGGAACTTATCGAGAAGTTGTTACAGACTGAAATCAATATATTCCGCTCAATCAGAGATGGAAGTGCTTACATGCAGCATATGGAGGATTTCTATTACATCACATTACTAGAGAGTAGTTTTTCCGTAACTTGTAAGGGAAATGACTACTCGGCACGGTTTAATAAATTGTCTTTTGAAACTCAACTTTCTGTTGAATTAAAGAACTTTACATGTATTGGCAGCAAGGAAAATGACAACGTTGTAATATTTTCGGTATAA
Protein sequence

>Msa0017480

MMNSLQFRYSPNSTRPQFSRTFPPHYNFPPKFRFLSLPRFNGRIRRRRRKQGFSICCSSKTGSQIEKSSIEKNDERPPFDINLAVILAGFAFEAYTTPPENLGRREVDAAGTKTIYLSEEFFREIYDGQLFIKLKKGSSFPAMDPWGTSDPYVVLQMGSQTAKSNIKWGTKEPTWNEEFTFNFKRSAMKPLQVAAWDANLVTPHKRMGNAVVDLEWLCDGDTHEILVELEGMGSGGEVWLEVKYKTFEEIDDEKKWWRIPFVSDFLKNTGFDSALRKVTGSDTVQVSQFVEYAFGQLKSFNNEKVRMSDTDNDKYDIESSGKSNNNTGSSEASNEASNEQRNMEEFLSCDSETENGHALEASPQASEEELSNQRFWKNFSKVINANVVQKLGLSVPEKLKWDGLEFLNKIGSQSQDVAEDIYIESGLAMPESSEISDNKTTGQPSIAAIQSSLPEVKKATETLMKQTESILGGLMLLTATVSKMKDERRSSEERKTKEDSTEGVGSDIQYSASEKSPTPENGSLLEDKKTEEMKALFSTAESAMEAWTMLSTSLGHPSFIKSEFEKICFVDNASTDTQVAIWRDSARRRLVIAFRGTEQTQWKDLVTDLMLVPAGLNPERIGGDFKQEVQVHSGFLGAYDSVRTRIISLIRLAIGCVDDHSEFIHKWHIYVTGHSLGGALATLLALELSSHQLAKRGAISFTMYNFGSPRVGNKRFAEVYNEKVKDSWRIVNHRDIIPTIPRLMGYCHVNQPLFLAAGVSTNSLENKDILGDGYEGDVLGESTPDVIVNEFMKGEMELIEKLLQTEINIFRSIRDGSAYMQHMEDFYYITLLESSFSVTCKGNDYSARFNKLSFETQLSVELKNFTCIGSKENDNVVIFSV*