AlfalfaGEDB | Msa0022570

M. sativa cultivar zhongmu-4 / Msa0022570

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0022570	sp\|P93749\|Y2197_ARATH	76.694	369	79	4	1	368	1	363	0.0	556

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022570	Msa0070450	0.978122	3.600055e-145	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0022570	MtrunA17_Chr1g0175731	97.312	372	8	1	1	370	1	372	0.0	741
Msa0022570	MtrunA17_Chr7g0258951	81.892	370	65	2	1	370	1	368	0.0	568
Msa0022570	MtrunA17_Chr1g0213501	68.358	335	104	1	34	368	71	403	1.08e-164	466
Msa0022570	MtrunA17_Chr1g0194101	62.943	367	123	4	1	366	1	355	1.16e-157	447
Msa0022570	MtrunA17_Chr4g0069241	66.454	313	97	2	58	366	51	359	2.27e-146	418
Msa0022570	MtrunA17_Chr3g0084191	54.268	328	123	4	44	367	193	497	5.25e-114	341
Msa0022570	MtrunA17_Chr0c20g0493811	56.202	258	71	3	123	370	29	254	4.35e-94	282
Msa0022570	MtrunA17_Chr7g0270121	43.574	319	169	4	41	356	346	656	1.21e-81	263
Msa0022570	MtrunA17_Chr2g0289161	43.730	311	167	4	47	355	391	695	4.52e-81	262
Msa0022570	MtrunA17_Chr2g0320111	42.617	298	167	2	65	361	82	376	7.01e-81	253

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0022570	AT2G41970.1	76.694	369	79	4	1	368	1	363	0.0	556
Msa0022570	AT2G30740.5	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.2	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.10	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.11	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.6	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.15	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.4	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.14	63.056	360	120	4	2	359	5	353	3.22e-161	456
Msa0022570	AT2G30740.7	63.056	360	120	4	2	359	5	353	3.22e-161	456

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 90 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+TGG	0.205463	1_1:+42426153	Msa0022570:CDS
AACGCATATGGTGGTCGTGG+TGG	0.648970	1_1:+42422955	Msa0022570:CDS
AAGAACCAAGACTTGCATAT+TGG	0.431625	1_1:-42425035	None:intergenic
AAGCGGTTAACAGATAACTT+TGG	0.519656	1_1:+42424621	Msa0022570:CDS
ACAAAAGCACTTATTGGAGA+AGG	0.553038	1_1:+42424645	Msa0022570:CDS
ACAACAAAGTCTTGTAACTT+GGG	0.561069	1_1:+42426236	Msa0022570:CDS
ACAAGACTTTGTTGTCCTTT+AGG	0.303446	1_1:-42426228	None:intergenic
ACAAGAGTCTTGGGAACATT+TGG	0.353209	1_1:+42425404	Msa0022570:CDS
ACATCTCTATGAACTATTGA+AGG	0.445276	1_1:-42425281	None:intergenic
ACCAGTATCCAGCTTCTTAA+TGG	0.257119	1_1:-42424718	None:intergenic

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAGCATGCAAATTATGAAA+GGG	-	chr1_1:42422999-42423018	None:intergenic	30.0%
TGAAGCATGCAAATTATGAA+AGG	-	chr1_1:42423000-42423019	None:intergenic	30.0%
AATTGTGAATCATGTGACTA+TGG	-	chr1_1:42423145-42423164	None:intergenic	30.0%
TAGTCACATGATTCACAATT+CGG	+	chr1_1:42423145-42423164	Msa0022570:intron	30.0%
TACATGACATGTGAAGAATA+CGG	+	chr1_1:42423192-42423211	Msa0022570:intron	30.0%
CAGTTGGAAAAACTTACATT+GGG	-	chr1_1:42423324-42423343	None:intergenic	30.0%
AGAGGAATAAGAGGTTAAAT+AGG	-	chr1_1:42423456-42423475	None:intergenic	30.0%
ATCAAAGAAAGAGGAATAAG+AGG	-	chr1_1:42423465-42423484	None:intergenic	30.0%
TTCGCAAAAATACCACAAAT+CGG	+	chr1_1:42423544-42423563	Msa0022570:intron	30.0%
TGACAAACTGATCAGTAATT+TGG	+	chr1_1:42424152-42424171	Msa0022570:intron	30.0%

Showing 1 to 10 of 235 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	42422877	42426946	42422877	ID=Msa0022570;Name=Msa0022570
chr1_1	mRNA	42422877	42426946	42422877	ID=Msa0022570-mRNA-1;Parent=Msa0022570;Name=Msa0022570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|7\|0\|370
chr1_1	exon	42422877	42422982	42422877	ID=Msa0022570-mRNA-1:exon:12425;Parent=Msa0022570-mRNA-1
chr1_1	exon	42424523	42424782	42424523	ID=Msa0022570-mRNA-1:exon:12426;Parent=Msa0022570-mRNA-1
chr1_1	exon	42424949	42425075	42424949	ID=Msa0022570-mRNA-1:exon:12427;Parent=Msa0022570-mRNA-1
chr1_1	exon	42425168	42425441	42425168	ID=Msa0022570-mRNA-1:exon:12428;Parent=Msa0022570-mRNA-1
chr1_1	exon	42426125	42426257	42426125	ID=Msa0022570-mRNA-1:exon:12429;Parent=Msa0022570-mRNA-1
chr1_1	exon	42426365	42426451	42426365	ID=Msa0022570-mRNA-1:exon:12430;Parent=Msa0022570-mRNA-1
chr1_1	exon	42426821	42426946	42426821	ID=Msa0022570-mRNA-1:exon:12431;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42422877	42422982	42422877	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42424523	42424782	42424523	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42424949	42425075	42424949	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42425168	42425441	42425168	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42426125	42426257	42426125	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42426365	42426451	42426365	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1
chr1_1	CDS	42426821	42426946	42426821	ID=Msa0022570-mRNA-1:cds;Parent=Msa0022570-mRNA-1

Gene Sequence

>Msa0022570

ATGTTGTGCTGTGGAGGTGCAGATGAGGATTTAACCACTTTAGCTGCAAATCATTACAGTTCAGCAGCTATAGGGAGTAACGCATATGGTGGTCGTGGTGGTGGAGGCGGTGATAGAGGAGAGCCAAGGAGCAATATTATCAAGAGTGGTGGTCCGCAGAAAGCATTAGAAATTGAGTCAACCGAAATTAAGTTGAGCGAGTTAAAGCGGTTAACAGATAACTTTGGTACAAAAGCACTTATTGGAGAAGGTTCCAATGGGAGGGTTTTCCGCGCAAAGTTGAGTACTGGGGAGGAAGCTGCCATTAAGAAGCTGGATACTGGTTCTTCGCCGGATCCTGACTCCGATTCCGATTTTGAAGCGCAGTTAGCAATTGTTTCAAGACTGAAGAATGAACACTTTGTGGGGTTAATGGGATATTGTCTTGAGGCAAATAACAGAATTTTGGTTTACCAATATGCAAGTCTTGGTTCTTTGCATGACACATTGCATGGAAGAAAAGGAGTTCAAGGGGCTGAACCTGGTATAATTTTAAGTTGGAACCAAAGAGTAAAAGTTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAAGTTCAACCTTCAATAGTTCATAGAGATGTTAGATCCACCAATGTTTTGCTGTTCAATGATTATGAGGCTAAGATTGCAGATTTCAACTTGACAAATCAGTCTTCTGACTCGGCAGCTCGACTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCTATGACAGGGCAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTGGACCATACAATGCCTAAAGGACAACAAAGTCTTGTAACTTGGGCCACTCCAAGATTAAGTGAAGACAAAGTGAAACAATGTGTGGATCCTAAACTAAACAATGACTATCCGCCAAAAGCGATTGCTAAGTTGGCAGCAGTTGCAGCACTTTGTGTTCAGTATGAAGCTGATTTCAGGCCAAACATGACGATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATTCGAAACCGGCTGGACCTGACTCTCATGCTTGA

Protein sequence

>Msa0022570

MLCCGGADEDLTTLAANHYSSAAIGSNAYGGRGGGGGDRGEPRSNIIKSGGPQKALEIESTEIKLSELKRLTDNFGTKALIGEGSNGRVFRAKLSTGEEAAIKKLDTGSSPDPDSDSDFEAQLAIVSRLKNEHFVGLMGYCLEANNRILVYQYASLGSLHDTLHGRKGVQGAEPGIILSWNQRVKVAFGAAKGLEFLHEKVQPSIVHRDVRSTNVLLFNDYEAKIADFNLTNQSSDSAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPDSHA*