Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029080 | G7IEG1 | 90.332 | 693 | 36 | 5 | 1 | 682 | 1 | 673 | 0.0 | 1130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029080 | Msa1016910 | 0.801001 | 1.106370e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029080 | MtrunA17_Chr1g0185771 | 90.332 | 693 | 36 | 5 | 1 | 682 | 1 | 673 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029080 | AT4G02880.1 | 54.908 | 326 | 115 | 4 | 352 | 677 | 259 | 552 | 1.19e-93 | 301 |
| Msa0029080 | AT4G02880.1 | 52.459 | 61 | 29 | 0 | 1 | 61 | 1 | 61 | 2.58e-13 | 73.6 |
| Msa0029080 | AT4G02880.2 | 54.908 | 326 | 115 | 4 | 352 | 677 | 263 | 556 | 1.29e-93 | 301 |
| Msa0029080 | AT4G02880.2 | 52.459 | 61 | 29 | 0 | 1 | 61 | 1 | 61 | 2.53e-13 | 73.6 |
| Msa0029080 | AT1G03290.6 | 54.545 | 308 | 116 | 2 | 369 | 676 | 231 | 514 | 7.00e-88 | 285 |
| Msa0029080 | AT1G03290.6 | 73.077 | 52 | 14 | 0 | 1 | 52 | 1 | 52 | 6.48e-17 | 84.7 |
| Msa0029080 | AT1G03290.5 | 54.545 | 308 | 116 | 2 | 369 | 676 | 253 | 536 | 2.22e-87 | 284 |
| Msa0029080 | AT1G03290.5 | 73.077 | 52 | 14 | 0 | 1 | 52 | 1 | 52 | 8.04e-17 | 84.7 |
| Msa0029080 | AT1G03290.3 | 54.369 | 309 | 117 | 2 | 368 | 676 | 282 | 566 | 6.17e-87 | 284 |
| Msa0029080 | AT1G03290.3 | 73.077 | 52 | 14 | 0 | 1 | 52 | 1 | 52 | 1.02e-16 | 84.3 |
| Msa0029080 | AT1G03290.2 | 54.369 | 309 | 117 | 2 | 368 | 676 | 282 | 566 | 6.17e-87 | 284 |
| Msa0029080 | AT1G03290.2 | 73.077 | 52 | 14 | 0 | 1 | 52 | 1 | 52 | 1.02e-16 | 84.3 |
| Msa0029080 | AT1G03290.4 | 54.369 | 309 | 117 | 2 | 368 | 676 | 282 | 566 | 6.17e-87 | 284 |
| Msa0029080 | AT1G03290.4 | 73.077 | 52 | 14 | 0 | 1 | 52 | 1 | 52 | 1.02e-16 | 84.3 |
| Msa0029080 | AT1G03290.1 | 54.369 | 309 | 117 | 2 | 368 | 676 | 282 | 566 | 6.17e-87 | 284 |
| Msa0029080 | AT1G03290.1 | 73.077 | 52 | 14 | 0 | 1 | 52 | 1 | 52 | 1.02e-16 | 84.3 |
| Msa0029080 | AT5G64980.1 | 63.043 | 46 | 17 | 0 | 1 | 46 | 1 | 46 | 2.10e-12 | 69.7 |
| Msa0029080 | AT5G64980.2 | 63.043 | 46 | 17 | 0 | 1 | 46 | 1 | 46 | 2.10e-12 | 69.7 |
Find 168 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATGCTGGGGAAATTTA+TGG | 0.158311 | 1_1:+54245268 | Msa0029080:intron |
| TGAAGATGAAGGGGAGATTT+TGG | 0.214160 | 1_1:+54243720 | Msa0029080:CDS |
| GAGCTCTAGAACAACTTAAT+AGG | 0.234347 | 1_1:+54247163 | Msa0029080:three_prime_UTR |
| GGATGTCATTGTTGAAAATT+TGG | 0.236630 | 1_1:+54244329 | Msa0029080:CDS |
| AGGAGACATCAAATGGATTT+TGG | 0.242755 | 1_1:+54244268 | Msa0029080:CDS |
| AGTTGCATCTTAGCTTCTTC+TGG | 0.265917 | 1_1:+54246799 | Msa0029080:CDS |
| TCCGGTGGTCGCTGCTATAT+TGG | 0.280747 | 1_1:-54245062 | None:intergenic |
| GTTGAAAATTTGGCATCTTC+AGG | 0.284090 | 1_1:+54244339 | Msa0029080:CDS |
| TGCCTGTATAGGTGGATTCC+AGG | 0.290736 | 1_1:+54243435 | Msa0029080:intron |
| TCAAACAGTGTCTCAAGTTC+AGG | 0.292873 | 1_1:+54244572 | Msa0029080:CDS |
| TTATGGCGAAAAGGCAATTC+TGG | 0.316460 | 1_1:+54245285 | Msa0029080:CDS |
| GTTATTATTTCCAGACTCAT+AGG | 0.323264 | 1_1:+54242117 | Msa0029080:five_prime_UTR |
| TCCCCACCATTGAAAACAAT+TGG | 0.336636 | 1_1:-54246904 | None:intergenic |
| TCATAAGCTTGTTAAAAGTA+TGG | 0.338734 | 1_1:+54243747 | Msa0029080:CDS |
| TCAAGATATATATAACAAAA+AGG | 0.348309 | 1_1:-54247230 | None:intergenic |
| GAGGGTTTGATATTCTAGAT+AGG | 0.355256 | 1_1:+54245083 | Msa0029080:CDS |
| TACTGCAGGCTGGATTATAT+TGG | 0.370799 | 1_1:-54244683 | None:intergenic |
| ACACTCGAAGGATGCTGATA+TGG | 0.376751 | 1_1:+54243481 | Msa0029080:CDS |
| GTTACTGTAACATTCAGATC+TGG | 0.391606 | 1_1:-54243835 | None:intergenic |
| TCACGTCTGTCCAGCTTGTC+TGG | 0.392930 | 1_1:+54245331 | Msa0029080:CDS |
| AAATCTGCCAGCTCTTCTTC+TGG | 0.403009 | 1_1:+54243811 | Msa0029080:CDS |
| GTAGCATTTATAAACCTTGA+AGG | 0.403669 | 1_1:+54243880 | Msa0029080:CDS |
| AGCTCTAGAACAACTTAATA+GGG | 0.405941 | 1_1:+54247164 | Msa0029080:three_prime_UTR |
| CCCCACCATTGAAAACAATT+GGG | 0.410851 | 1_1:-54246903 | None:intergenic |
| TAAAAGTAGACTCACCTTCC+AGG | 0.411888 | 1_1:-54243598 | None:intergenic |
| TCAAGGTTTATAAATGCTAC+AGG | 0.412424 | 1_1:-54243877 | None:intergenic |
| AGAAATTTCTGTTATCTGTC+AGG | 0.418878 | 1_1:+54246705 | Msa0029080:CDS |
| ATGAAACCAGTCAATTGCTT+GGG | 0.419864 | 1_1:+54244196 | Msa0029080:CDS |
| TTCTTCTCATTATGTACATC+GGG | 0.421455 | 1_1:+54243780 | Msa0029080:CDS |
| GATGAGAGAGGTGGAACATC+AGG | 0.426615 | 1_1:+54245021 | Msa0029080:CDS |
| ACGCAATTTCCCTATGAGTC+TGG | 0.428884 | 1_1:-54242127 | None:intergenic |
| TGAAAACAATTGGGGCTGCC+TGG | 0.429019 | 1_1:-54246894 | None:intergenic |
| CCCTAGAGTCATAGTGAACC+TGG | 0.434969 | 1_1:+54243580 | Msa0029080:CDS |
| AAGAATATGATTATATAAGT+AGG | 0.439675 | 1_1:-54242227 | None:intergenic |
| CACAATGCTCTTATTGATGA+TGG | 0.440539 | 1_1:+54246949 | Msa0029080:CDS |
| AACTTCCAGCATCCCCTTCA+CGG | 0.443619 | 1_1:+54243549 | Msa0029080:CDS |
| CCAGGTTCACTATGACTCTA+GGG | 0.446067 | 1_1:-54243580 | None:intergenic |
| GCATCATAATCTTCAGCCTT+AGG | 0.448094 | 1_1:-54244477 | None:intergenic |
| AAAATCCATTTGATGTCTCC+TGG | 0.449566 | 1_1:-54244266 | None:intergenic |
| TCAGGAGAAACTTGCAGAGC+AGG | 0.457789 | 1_1:+54245039 | Msa0029080:CDS |
| GAAAGTGAAAGTGAAGATGA+AGG | 0.459096 | 1_1:+54243709 | Msa0029080:CDS |
| GTCCAGCTTGTCTGGTGAAA+GGG | 0.461081 | 1_1:+54245339 | Msa0029080:CDS |
| GGCTGCGGAAGTTGTTCTTA+CGG | 0.467393 | 1_1:+54243502 | Msa0029080:CDS |
| AAGAGCATTGTGTTCAGCCT+TGG | 0.467976 | 1_1:-54246938 | None:intergenic |
| ATCCCTTTCACCAGACAAGC+TGG | 0.471279 | 1_1:-54245341 | None:intergenic |
| ATTTCCCAGGAGACATCAAA+TGG | 0.472240 | 1_1:+54244261 | Msa0029080:CDS |
| TCCATTGCCATTGTTAGTCA+TGG | 0.473377 | 1_1:-54244415 | None:intergenic |
| GGAATTACAAGGAAAAGATA+AGG | 0.473900 | 1_1:+54246000 | Msa0029080:intron |
| TGTCCAGCTTGTCTGGTGAA+AGG | 0.474114 | 1_1:+54245338 | Msa0029080:CDS |
| TGCCGATTCTTCTTGTGGAC+TGG | 0.474130 | 1_1:+54244119 | Msa0029080:CDS |
| ATCCAGTCCACAAGAAGAAT+CGG | 0.478136 | 1_1:-54244121 | None:intergenic |
| CTGCGATACAAGTCACGGAT+TGG | 0.483106 | 1_1:+54244506 | Msa0029080:CDS |
| AGAATATGATTATATAAGTA+GGG | 0.487469 | 1_1:-54242226 | None:intergenic |
| GGTTTCATCATTTAGCTCAC+TGG | 0.490778 | 1_1:-54244181 | None:intergenic |
| TCTAGAACAAGAAGCAATGA+TGG | 0.490819 | 1_1:+54245684 | Msa0029080:CDS |
| CTAATCGAGATTCAAGACTT+TGG | 0.492088 | 1_1:-54245588 | None:intergenic |
| ATGATAGCTCCCACCTTGCA+TGG | 0.494143 | 1_1:+54246042 | Msa0029080:CDS |
| CAAAACTGTGGCATCTAATG+TGG | 0.495135 | 1_1:+54246831 | Msa0029080:CDS |
| TACGTCAAATCGTCTCATCA+TGG | 0.495561 | 1_1:+54242446 | Msa0029080:exon |
| TCCAGGTTCACTATGACTCT+AGG | 0.497671 | 1_1:-54243581 | None:intergenic |
| GATGAAACCAGTCAATTGCT+TGG | 0.498096 | 1_1:+54244195 | Msa0029080:CDS |
| AGAAAGTGAACAAACCTTCA+AGG | 0.498899 | 1_1:-54243894 | None:intergenic |
| ATCTGGGCCAGAAGAAGAGC+TGG | 0.501030 | 1_1:-54243818 | None:intergenic |
| AATGATGGAGAAGGTAGTAC+AGG | 0.501842 | 1_1:+54245699 | Msa0029080:CDS |
| TGGGTCGTCTTCATCATCAT+TGG | 0.505413 | 1_1:+54244059 | Msa0029080:CDS |
| AAAGCGAGGATGAAGGGAAA+AGG | 0.505775 | 1_1:+54244001 | Msa0029080:CDS |
| AAAGCTGCCGATTCTTCTTG+TGG | 0.507371 | 1_1:+54244114 | Msa0029080:CDS |
| ATTTACCCCAAGCAATTGAC+TGG | 0.507418 | 1_1:-54244202 | None:intergenic |
| CCAACATCAGTATCTTCAAC+AGG | 0.508842 | 1_1:-54244039 | None:intergenic |
| AATAAACTTCACAATTCCGT+TGG | 0.508872 | 1_1:+54247077 | Msa0029080:three_prime_UTR |
| CCTAAAATAGAATTAAGAAC+GGG | 0.510453 | 1_1:-54242271 | None:intergenic |
| CAACCTGCCCACGATCCATC+AGG | 0.511341 | 1_1:-54246264 | None:intergenic |
| TCAGATGAAAGCGAGGATGA+AGG | 0.511685 | 1_1:+54243994 | Msa0029080:intron |
| AAAGTGAAAGTGAAGATGAA+GGG | 0.512917 | 1_1:+54243710 | Msa0029080:CDS |
| GTATCCCGTGAAGGGGATGC+TGG | 0.514200 | 1_1:-54243554 | None:intergenic |
| CTTCTTCTCATTATGTACAT+CGG | 0.516871 | 1_1:+54243779 | Msa0029080:CDS |
| TTTGAGGTATAAACAGCAGT+AGG | 0.516968 | 1_1:-54247055 | None:intergenic |
| GCCAATATAGCAGCGACCAC+CGG | 0.517149 | 1_1:+54245061 | Msa0029080:CDS |
| GCAGCTTTGATGATTTGTAC+AGG | 0.517673 | 1_1:-54244099 | None:intergenic |
| AGGGTTTGATATTCTAGATA+GGG | 0.517722 | 1_1:+54245084 | Msa0029080:CDS |
| AGAGTCTTCTGACTCGATCA+AGG | 0.518967 | 1_1:-54244544 | None:intergenic |
| TGGGGAAATTTATGGCGAAA+AGG | 0.520761 | 1_1:+54245276 | Msa0029080:CDS |
| GGAAAAGATAAGGGAGCAGA+AGG | 0.524955 | 1_1:+54246010 | Msa0029080:intron |
| CAAACAGTGTCTCAAGTTCA+GGG | 0.526735 | 1_1:+54244573 | Msa0029080:CDS |
| TTATTATTTCCAGACTCATA+GGG | 0.528143 | 1_1:+54242118 | Msa0029080:five_prime_UTR |
| CAGATGAAAGCGAGGATGAA+GGG | 0.528971 | 1_1:+54243995 | Msa0029080:intron |
| CGTGAGTTCCTGATGGATCG+TGG | 0.534361 | 1_1:+54246256 | Msa0029080:CDS |
| AGCATATCAATACTGCAGGC+TGG | 0.534938 | 1_1:-54244693 | None:intergenic |
| GAAAACAATTGGGGCTGCCT+GGG | 0.536146 | 1_1:-54246893 | None:intergenic |
| TTGCTTGGGGTAAATAATGA+TGG | 0.536969 | 1_1:+54244210 | Msa0029080:CDS |
| GAATTACAAGGAAAAGATAA+GGG | 0.537025 | 1_1:+54246001 | Msa0029080:intron |
| ACAGTTACGTGAGTTCCTGA+TGG | 0.538443 | 1_1:+54246249 | Msa0029080:intron |
| ACTTCCAGCATCCCCTTCAC+GGG | 0.543809 | 1_1:+54243550 | Msa0029080:CDS |
| CTTGTTAAAAGTATGGATGT+TGG | 0.543919 | 1_1:+54243754 | Msa0029080:CDS |
| TAGGGTTTGTATCCCGTGAA+GGG | 0.545390 | 1_1:-54243562 | None:intergenic |
| CTCAAGCATATCAATACTGC+AGG | 0.545954 | 1_1:-54244697 | None:intergenic |
| GTTCCTGATGGATCGTGGGC+AGG | 0.547821 | 1_1:+54246261 | Msa0029080:CDS |
| TTACTGTAACATTCAGATCT+GGG | 0.548270 | 1_1:-54243834 | None:intergenic |
| TCCATGACTAACAATGGCAA+TGG | 0.550339 | 1_1:+54244414 | Msa0029080:CDS |
| AAAGATGCAGAACTGGACTC+TGG | 0.555288 | 1_1:+54246988 | Msa0029080:CDS |
| CGCGTGCAACAATTAACACT+AGG | 0.557347 | 1_1:+54242161 | Msa0029080:five_prime_UTR |
| TGCTCTTATTGATGATGGGT+GGG | 0.557476 | 1_1:+54246954 | Msa0029080:CDS |
| ATCTAGAATATCAAACCCTC+CGG | 0.557961 | 1_1:-54245080 | None:intergenic |
| TTCTTTAGCGTGCACCAACA+TGG | 0.558785 | 1_1:-54245122 | None:intergenic |
| AAATCCATTTGATGTCTCCT+GGG | 0.561238 | 1_1:-54244265 | None:intergenic |
| CAAACAATCTGAATGAAGAG+TGG | 0.561365 | 1_1:+54244442 | Msa0029080:CDS |
| GGAAGCTGAAGAGAATTCAA+AGG | 0.561722 | 1_1:+54245741 | Msa0029080:CDS |
| ACGTCAAATCGTCTCATCAT+GGG | 0.564406 | 1_1:+54242447 | Msa0029080:exon |
| AATTCTGGCGACTGAGCTGA+AGG | 0.568587 | 1_1:+54245300 | Msa0029080:CDS |
| AAACAATCTGAATGAAGAGT+GGG | 0.568659 | 1_1:+54244443 | Msa0029080:CDS |
| TATCTCTAGTGAAATTTCCC+AGG | 0.568889 | 1_1:+54244248 | Msa0029080:CDS |
| CAAGGTTTATAAATGCTACA+GGG | 0.573009 | 1_1:-54243876 | None:intergenic |
| ATTGATGAGAATACGACTCT+AGG | 0.573030 | 1_1:+54244660 | Msa0029080:CDS |
| GCTGTGAATGATTTGCTCAA+AGG | 0.574101 | 1_1:-54246766 | None:intergenic |
| TTCAGGTGTATATCACGTGT+TGG | 0.574166 | 1_1:+54244356 | Msa0029080:CDS |
| ACAAGAAGCAATGATGGAGA+AGG | 0.575425 | 1_1:+54245690 | Msa0029080:CDS |
| ACAGATAAATGTTGCAGAGG+AGG | 0.575696 | 1_1:+54244386 | Msa0029080:CDS |
| AAGTGAAAGTGAAGATGAAG+GGG | 0.577481 | 1_1:+54243711 | Msa0029080:CDS |
| CTAGGGTTTGTATCCCGTGA+AGG | 0.582518 | 1_1:-54243563 | None:intergenic |
| TGATAGCTCCCACCTTGCAT+GGG | 0.584576 | 1_1:+54246043 | Msa0029080:CDS |
| AGCCACTGCTCTCAACAACC+TGG | 0.584916 | 1_1:-54243453 | None:intergenic |
| GTCTCTTGCAATTCTTGATG+AGG | 0.585007 | 1_1:+54245366 | Msa0029080:CDS |
| TAGCTCCCACCTTGCATGGG+AGG | 0.585153 | 1_1:+54246046 | Msa0029080:CDS |
| TAAGGGAGCAGAAGGAAGCA+AGG | 0.587163 | 1_1:+54246018 | Msa0029080:CDS |
| ACAGACCTCCCATGCAAGGT+GGG | 0.587770 | 1_1:-54246051 | None:intergenic |
| ACCTAAAATAGAATTAAGAA+CGG | 0.588624 | 1_1:-54242272 | None:intergenic |
| TTCCAGGTTGTTGAGAGCAG+TGG | 0.591480 | 1_1:+54243451 | Msa0029080:CDS |
| AGCAGAAATGTTGAGGAAAG+CGG | 0.595016 | 1_1:+54245615 | Msa0029080:CDS |
| CGCTAAAGAAGCAAATGACA+TGG | 0.595563 | 1_1:+54245135 | Msa0029080:CDS |
| GCGATTAGTGAAAGAGTGTG+TGG | 0.601295 | 1_1:-54242190 | None:intergenic |
| CTGTTGAAGATACTGATGTT+GGG | 0.601353 | 1_1:+54244040 | Msa0029080:CDS |
| CCTGTTGAAGATACTGATGT+TGG | 0.601909 | 1_1:+54244039 | Msa0029080:CDS |
| AGATTCCATTGATGAAAACA+AGG | 0.603118 | 1_1:-54244987 | None:intergenic |
| CCCACCATTGAAAACAATTG+GGG | 0.604270 | 1_1:-54246902 | None:intergenic |
| AAGGGAGCAGAAGGAAGCAA+GGG | 0.604835 | 1_1:+54246019 | Msa0029080:CDS |
| CGATTAGTGAAAGAGTGTGT+GGG | 0.604862 | 1_1:-54242189 | None:intergenic |
| GTGAGTTCCTGATGGATCGT+GGG | 0.605354 | 1_1:+54246257 | Msa0029080:CDS |
| CGAGGATGAAGGGAAAAGGT+TGG | 0.606782 | 1_1:+54244005 | Msa0029080:CDS |
| ACAATGCTCTTATTGATGAT+GGG | 0.607324 | 1_1:+54246950 | Msa0029080:CDS |
| GAAGGATGCTGATATGGCTG+CGG | 0.608075 | 1_1:+54243487 | Msa0029080:CDS |
| CAAAACAGACCTCCCATGCA+AGG | 0.609255 | 1_1:-54246055 | None:intergenic |
| AAGAAGTTAATAACATCCAA+CGG | 0.613219 | 1_1:-54247093 | None:intergenic |
| AATATAGCAGCGACCACCGG+AGG | 0.613783 | 1_1:+54245064 | Msa0029080:CDS |
| AGATGAGTATCAAGCCATGT+TGG | 0.617399 | 1_1:+54245108 | Msa0029080:CDS |
| AGGGTTTGTATCCCGTGAAG+GGG | 0.617974 | 1_1:-54243561 | None:intergenic |
| TATCAACTTGATGAGAGAGG+TGG | 0.618003 | 1_1:+54245012 | Msa0029080:CDS |
| GGAATCACGGAGACTACAGC+AGG | 0.619130 | 1_1:+54245720 | Msa0029080:CDS |
| TAGCTGCAGCAGAAATGTTG+AGG | 0.619883 | 1_1:+54245608 | Msa0029080:CDS |
| TAGAATATCAAACCCTCCGG+TGG | 0.620228 | 1_1:-54245077 | None:intergenic |
| CTGCAGTATTGATATGCTTG+AGG | 0.622883 | 1_1:+54244698 | Msa0029080:CDS |
| GCTACTTCCATGACTAACAA+TGG | 0.625453 | 1_1:+54244408 | Msa0029080:CDS |
| AGAAGGTAGTACAGGAATCA+CGG | 0.625668 | 1_1:+54245707 | Msa0029080:CDS |
| ATGCTCTTATTGATGATGGG+TGG | 0.625789 | 1_1:+54246953 | Msa0029080:CDS |
| TGTATATCACGTGTTGGAGA+CGG | 0.626009 | 1_1:+54244362 | Msa0029080:CDS |
| AGAGTCATAGTGAACCTGGA+AGG | 0.630016 | 1_1:+54243584 | Msa0029080:CDS |
| AAAACTGTGGCATCTAATGT+GGG | 0.641802 | 1_1:+54246832 | Msa0029080:CDS |
| AAACAGTGTCTCAAGTTCAG+GGG | 0.648434 | 1_1:+54244574 | Msa0029080:CDS |
| TCTTATCAACTTGATGAGAG+AGG | 0.649092 | 1_1:+54245009 | Msa0029080:CDS |
| AACAGACCTCCCATGCAAGG+TGG | 0.650300 | 1_1:-54246052 | None:intergenic |
| TGAATCTTCAGATGAAAGCG+AGG | 0.654788 | 1_1:+54243987 | Msa0029080:intron |
| TGGTTCATCCCACAAAACTG+TGG | 0.661631 | 1_1:+54246819 | Msa0029080:CDS |
| ATATAGCAGCGACCACCGGA+GGG | 0.663604 | 1_1:+54245065 | Msa0029080:CDS |
| AGTGGCTATTGAACACTCGA+AGG | 0.665070 | 1_1:+54243469 | Msa0029080:CDS |
| GGAACAGATAAATGTTGCAG+AGG | 0.665164 | 1_1:+54244383 | Msa0029080:CDS |
| TGGGGAAGAGGAGAGCTCCA+AGG | 0.665274 | 1_1:+54246921 | Msa0029080:CDS |
| TGAAACCAGTCAATTGCTTG+GGG | 0.667240 | 1_1:+54244197 | Msa0029080:CDS |
| ACTATCTGCGATACAAGTCA+CGG | 0.668223 | 1_1:+54244501 | Msa0029080:CDS |
| TGAAGTACTCGAGATCACCC+AGG | 0.671598 | 1_1:+54246876 | Msa0029080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATCTCTTTAATATATT+TGG | - | chr1_1:54243353-54243372 | None:intergenic | 10.0% |
| !! | TATTAAATTATTCAAAACAA+TGG | - | chr1_1:54244850-54244869 | None:intergenic | 10.0% |
| !! | AAAAGTAGATTTAATAAATT+TGG | - | chr1_1:54246667-54246686 | None:intergenic | 10.0% |
| !!! | TTTTATATTTCAGTATAAAA+TGG | + | chr1_1:54247114-54247133 | Msa0029080:three_prime_UTR | 10.0% |
| !! | AGAATATGATTATATAAGTA+GGG | - | chr1_1:54242229-54242248 | None:intergenic | 15.0% |
| !! | AAGAATATGATTATATAAGT+AGG | - | chr1_1:54242230-54242249 | None:intergenic | 15.0% |
| !! | TTTGAAAAAGTTAACAAATT+CGG | - | chr1_1:54242636-54242655 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTTGTTTAGATT+CGG | - | chr1_1:54242883-54242902 | None:intergenic | 15.0% |
| !! | TATAACTATTACTTTCTTAT+TGG | + | chr1_1:54242973-54242992 | Msa0029080:intron | 15.0% |
| !! | ATAACTATTACTTTCTTATT+GGG | + | chr1_1:54242974-54242993 | Msa0029080:intron | 15.0% |
| !! | ATTTCACTGTTATTATTTAA+TGG | + | chr1_1:54245514-54245533 | Msa0029080:intron | 15.0% |
| !! | TTTACAGAAATATAATGAAA+TGG | - | chr1_1:54245793-54245812 | None:intergenic | 15.0% |
| !!! | ATTGTTAAAATAACTTTTAG+TGG | + | chr1_1:54245943-54245962 | Msa0029080:intron | 15.0% |
| !!! | TTGTTAAAATAACTTTTAGT+GGG | + | chr1_1:54245944-54245963 | Msa0029080:intron | 15.0% |
| !! | ATTAAAAACCATTAAACAAT+GGG | - | chr1_1:54246206-54246225 | None:intergenic | 15.0% |
| !! | AATTAAAAACCATTAAACAA+TGG | - | chr1_1:54246207-54246226 | None:intergenic | 15.0% |
| !! | TAATCAAAATTACACTAAAA+AGG | - | chr1_1:54246431-54246450 | None:intergenic | 15.0% |
| !!! | TTTTAGTGTAATTTTGATTA+TGG | + | chr1_1:54246431-54246450 | Msa0029080:intron | 15.0% |
| !!! | TTTTGTTTATAATTTTTCCT+TGG | + | chr1_1:54247201-54247220 | Msa0029080:three_prime_UTR | 15.0% |
| !! | TCAAGATATATATAACAAAA+AGG | - | chr1_1:54247233-54247252 | None:intergenic | 15.0% |
| !! | ACCTAAAATAGAATTAAGAA+CGG | - | chr1_1:54242275-54242294 | None:intergenic | 20.0% |
| !! | ATCTACAATCATAATTGAAT+AGG | - | chr1_1:54242529-54242548 | None:intergenic | 20.0% |
| !!! | ATCATGTTTTATTTGTATTC+TGG | + | chr1_1:54242608-54242627 | Msa0029080:intron | 20.0% |
| !!! | TAAATTTAACTTTCTACCTA+AGG | + | chr1_1:54242687-54242706 | Msa0029080:intron | 20.0% |
| !! | TAAACAAAAATACTAACTTG+AGG | + | chr1_1:54242887-54242906 | Msa0029080:intron | 20.0% |
| !! | TAACTATTACTTTCTTATTG+GGG | + | chr1_1:54242975-54242994 | Msa0029080:intron | 20.0% |
| !! | ATATTAAAGAGATATTACAC+TGG | + | chr1_1:54243356-54243375 | Msa0029080:intron | 20.0% |
| !! | TATTAAAGAGATATTACACT+GGG | + | chr1_1:54243357-54243376 | Msa0029080:intron | 20.0% |
| !! | AGTTCTATCAAATATAAGTA+AGG | - | chr1_1:54244808-54244827 | None:intergenic | 20.0% |
| !!! | AGCTTTTAAATATTTGATGA+TGG | + | chr1_1:54245196-54245215 | Msa0029080:intron | 20.0% |
| !! | AGAAATATAATGAAATGGTT+TGG | - | chr1_1:54245788-54245807 | None:intergenic | 20.0% |
| !! | TAAAAGAACTCTTTCATATA+TGG | - | chr1_1:54245819-54245838 | None:intergenic | 20.0% |
| !! | TTAAAAACCATTAAACAATG+GGG | - | chr1_1:54246205-54246224 | None:intergenic | 20.0% |
| !!! | TGTAAATATTATTTTCTTCC+TGG | + | chr1_1:54246331-54246350 | Msa0029080:intron | 20.0% |
| ! | TTATTATTTCCAGACTCATA+GGG | + | chr1_1:54242118-54242137 | Msa0029080:five_prime_UTR | 25.0% |
| ! | CCTAAAATAGAATTAAGAAC+GGG | - | chr1_1:54242274-54242293 | None:intergenic | 25.0% |
| ! | TGTTTAATCATACAATCCTT+AGG | - | chr1_1:54242706-54242725 | None:intergenic | 25.0% |
| ! | TATATGACACTTGAGTTTAT+CGG | + | chr1_1:54243037-54243056 | Msa0029080:intron | 25.0% |
| ! | AGCAAGTCAATTTACAATTA+GGG | - | chr1_1:54243075-54243094 | None:intergenic | 25.0% |
| ! | AAGCAAGTCAATTTACAATT+AGG | - | chr1_1:54243076-54243095 | None:intergenic | 25.0% |
| ! | ATTAGTATGTGAACTATTCA+AGG | + | chr1_1:54243187-54243206 | Msa0029080:intron | 25.0% |
| ! | TTTCTGACTGTAACAAATTT+AGG | + | chr1_1:54243243-54243262 | Msa0029080:intron | 25.0% |
| !!! | GAAGTTTTTTAGAAATTGCT+GGG | - | chr1_1:54243535-54243554 | None:intergenic | 25.0% |
| !!! | TCATAAGCTTGTTAAAAGTA+TGG | + | chr1_1:54243747-54243766 | Msa0029080:CDS | 25.0% |
| !! | CAGTCCTATTTTCTTATATT+TGG | + | chr1_1:54244757-54244776 | Msa0029080:intron | 25.0% |
| ! | GCATCCAAATATAAGAAAAT+AGG | - | chr1_1:54244764-54244783 | None:intergenic | 25.0% |
| ! | TCACTGTTATTATTTAATGG+AGG | + | chr1_1:54245517-54245536 | Msa0029080:intron | 25.0% |
| ! | TGTGTATAGTAAGTTCATAT+TGG | + | chr1_1:54245840-54245859 | Msa0029080:intron | 25.0% |
| ! | GAATTACAAGGAAAAGATAA+GGG | + | chr1_1:54246001-54246020 | Msa0029080:intron | 25.0% |
| ! | TACAACAAAATGAACAGATA+GGG | - | chr1_1:54246483-54246502 | None:intergenic | 25.0% |
| !!! | GAATTGTGAAGTTTATTTTG+AGG | - | chr1_1:54247074-54247093 | None:intergenic | 25.0% |
| ! | AAGAAGTTAATAACATCCAA+CGG | - | chr1_1:54247096-54247115 | None:intergenic | 25.0% |
| GTTATTATTTCCAGACTCAT+AGG | + | chr1_1:54242117-54242136 | Msa0029080:five_prime_UTR | 30.0% | |
| ACGGGAAAAATGATTGAAAT+AGG | - | chr1_1:54242256-54242275 | None:intergenic | 30.0% | |
| ! | CCCGTTCTTAATTCTATTTT+AGG | + | chr1_1:54242271-54242290 | Msa0029080:five_prime_UTR | 30.0% |
| ATAGGTATGTATGTATACCT+GGG | - | chr1_1:54242511-54242530 | None:intergenic | 30.0% | |
| AATAGGTATGTATGTATACC+TGG | - | chr1_1:54242512-54242531 | None:intergenic | 30.0% | |
| ACTAAAAACATAGGGAACTT+GGG | - | chr1_1:54242749-54242768 | None:intergenic | 30.0% | |
| TTCAAACGCTATAATTGCAT+GGG | - | chr1_1:54242772-54242791 | None:intergenic | 30.0% | |
| TTTCAAACGCTATAATTGCA+TGG | - | chr1_1:54242773-54242792 | None:intergenic | 30.0% | |
| ! | TTGTTGCTTATAGTCGTTAT+TGG | + | chr1_1:54242822-54242841 | Msa0029080:intron | 30.0% |
| ! | TGTTGCTTATAGTCGTTATT+GGG | + | chr1_1:54242823-54242842 | Msa0029080:intron | 30.0% |
| !! | CCTACAATTAAAGTGTTTTC+TGG | - | chr1_1:54242922-54242941 | None:intergenic | 30.0% |
| CCAGAAAACACTTTAATTGT+AGG | + | chr1_1:54242919-54242938 | Msa0029080:intron | 30.0% | |
| ATTACTTTCTTATTGGGGTA+TGG | + | chr1_1:54242980-54242999 | Msa0029080:intron | 30.0% | |
| TGGAATGGTTATATCAATCA+TGG | + | chr1_1:54243000-54243019 | Msa0029080:intron | 30.0% | |
| ! | TTGAGTTTATCGGATTTTCA+AGG | + | chr1_1:54243047-54243066 | Msa0029080:intron | 30.0% |
| !!! | GGAAGTTTTTTAGAAATTGC+TGG | - | chr1_1:54243536-54243555 | None:intergenic | 30.0% |
| AAGCTATTTAGAGAATGGTA+TGG | - | chr1_1:54243637-54243656 | None:intergenic | 30.0% | |
| AAAGCAAGCTATTTAGAGAA+TGG | - | chr1_1:54243642-54243661 | None:intergenic | 30.0% | |
| !! | CTAAATAGCTTGCTTTGAAA+CGG | + | chr1_1:54243646-54243665 | Msa0029080:intron | 30.0% |
| AAAGTGAAAGTGAAGATGAA+GGG | + | chr1_1:54243710-54243729 | Msa0029080:CDS | 30.0% | |
| ! | CTTGTTAAAAGTATGGATGT+TGG | + | chr1_1:54243754-54243773 | Msa0029080:CDS | 30.0% |
| CTTCTTCTCATTATGTACAT+CGG | + | chr1_1:54243779-54243798 | Msa0029080:CDS | 30.0% | |
| TTCTTCTCATTATGTACATC+GGG | + | chr1_1:54243780-54243799 | Msa0029080:CDS | 30.0% | |
| TTACTGTAACATTCAGATCT+GGG | - | chr1_1:54243837-54243856 | None:intergenic | 30.0% | |
| CAAGGTTTATAAATGCTACA+GGG | - | chr1_1:54243879-54243898 | None:intergenic | 30.0% | |
| TCAAGGTTTATAAATGCTAC+AGG | - | chr1_1:54243880-54243899 | None:intergenic | 30.0% | |
| GTAGCATTTATAAACCTTGA+AGG | + | chr1_1:54243880-54243899 | Msa0029080:CDS | 30.0% | |
| !! | AGCTAGTGAAAATTTTGATC+AGG | + | chr1_1:54244296-54244315 | Msa0029080:CDS | 30.0% |
| !! | GCTAGTGAAAATTTTGATCA+GGG | + | chr1_1:54244297-54244316 | Msa0029080:CDS | 30.0% |
| GGATGTCATTGTTGAAAATT+TGG | + | chr1_1:54244329-54244348 | Msa0029080:CDS | 30.0% | |
| AAACAATCTGAATGAAGAGT+GGG | + | chr1_1:54244443-54244462 | Msa0029080:CDS | 30.0% | |
| !!! | ATTTGTTTTTGCTTCATCGA+TGG | - | chr1_1:54244727-54244746 | None:intergenic | 30.0% |
| CGATGAAGCAAAAACAAATA+AGG | + | chr1_1:54244728-54244747 | Msa0029080:CDS | 30.0% | |
| ATTCAAAACAATGGTTACAC+TGG | - | chr1_1:54244841-54244860 | None:intergenic | 30.0% | |
| !!! | GAAAACCTTGTTTTCATCAA+TGG | + | chr1_1:54244982-54245001 | Msa0029080:intron | 30.0% |
| AGATTCCATTGATGAAAACA+AGG | - | chr1_1:54244990-54245009 | None:intergenic | 30.0% | |
| AGGGTTTGATATTCTAGATA+GGG | + | chr1_1:54245084-54245103 | Msa0029080:CDS | 30.0% | |
| !!! | TGATGGTTTTTTAGACATGA+TGG | + | chr1_1:54245213-54245232 | Msa0029080:intron | 30.0% |
| TCTGAATAATCTCAGTTAGT+CGG | - | chr1_1:54245486-54245505 | None:intergenic | 30.0% | |
| CTAACTGAGATTATTCAGAT+CGG | + | chr1_1:54245487-54245506 | Msa0029080:intron | 30.0% | |
| AAAGCTTGAAAAAGAGGAAT+CGG | + | chr1_1:54245648-54245667 | Msa0029080:CDS | 30.0% | |
| ATATTGGTCCTCTAATCTTT+AGG | + | chr1_1:54245856-54245875 | Msa0029080:intron | 30.0% | |
| TATTGGTCCTCTAATCTTTA+GGG | + | chr1_1:54245857-54245876 | Msa0029080:intron | 30.0% | |
| ! | TTTAAGATCATGATACACGT+TGG | + | chr1_1:54245968-54245987 | Msa0029080:intron | 30.0% |
| GGAATTACAAGGAAAAGATA+AGG | + | chr1_1:54246000-54246019 | Msa0029080:intron | 30.0% | |
| !! | AGCGAATGAATTTAGCTTTA+TGG | - | chr1_1:54246083-54246102 | None:intergenic | 30.0% |
| ! | CTAATCTATAGGCTTTGATT+GGG | - | chr1_1:54246124-54246143 | None:intergenic | 30.0% |
| ! | ACTAATCTATAGGCTTTGAT+TGG | - | chr1_1:54246125-54246144 | None:intergenic | 30.0% |
| CCAATCGTTAACTAATCTAT+AGG | - | chr1_1:54246135-54246154 | None:intergenic | 30.0% | |
| ! | CCTATAGATTAGTTAACGAT+TGG | + | chr1_1:54246132-54246151 | Msa0029080:intron | 30.0% |
| !! | AGTATTGATAGTTCAATACC+AGG | - | chr1_1:54246352-54246371 | None:intergenic | 30.0% |
| GTACAACAAAATGAACAGAT+AGG | - | chr1_1:54246484-54246503 | None:intergenic | 30.0% | |
| !! | ATCTGTTCATTTTGTTGTAC+TGG | + | chr1_1:54246484-54246503 | Msa0029080:intron | 30.0% |
| TAGGGAAACAGTAAATCAAA+TGG | - | chr1_1:54246513-54246532 | None:intergenic | 30.0% | |
| ATACTGAAACAGGATTTCTA+GGG | - | chr1_1:54246531-54246550 | None:intergenic | 30.0% | |
| TATACTGAAACAGGATTTCT+AGG | - | chr1_1:54246532-54246551 | None:intergenic | 30.0% | |
| AATCCTGTTTCAGTATAACT+TGG | + | chr1_1:54246535-54246554 | Msa0029080:intron | 30.0% | |
| TATCCAAGTTATACTGAAAC+AGG | - | chr1_1:54246541-54246560 | None:intergenic | 30.0% | |
| !! | CTTTTTGTTTAACTTTGCAG+AGG | + | chr1_1:54246682-54246701 | Msa0029080:intron | 30.0% |
| AGAAATTTCTGTTATCTGTC+AGG | + | chr1_1:54246705-54246724 | Msa0029080:CDS | 30.0% | |
| ! | ACAATGCTCTTATTGATGAT+GGG | + | chr1_1:54246950-54246969 | Msa0029080:CDS | 30.0% |
| ! | GGAAATATTTTTCCTTCTCT+TGG | - | chr1_1:54247037-54247056 | None:intergenic | 30.0% |
| AATAAACTTCACAATTCCGT+TGG | + | chr1_1:54247077-54247096 | Msa0029080:three_prime_UTR | 30.0% | |
| !! | AGCTCTAGAACAACTTAATA+GGG | + | chr1_1:54247164-54247183 | Msa0029080:three_prime_UTR | 30.0% |
| TAACAAAAAGGCAAAAACCA+AGG | - | chr1_1:54247221-54247240 | None:intergenic | 30.0% | |
| AATCATGCATATTCGACGTT+AGG | + | chr1_1:54242394-54242413 | Msa0029080:intron | 35.0% | |
| ATCATGCATATTCGACGTTA+GGG | + | chr1_1:54242395-54242414 | Msa0029080:intron | 35.0% | |
| TAGGTATGTATGTATACCTG+GGG | - | chr1_1:54242510-54242529 | None:intergenic | 35.0% | |
| GACTAAAAACATAGGGAACT+TGG | - | chr1_1:54242750-54242769 | None:intergenic | 35.0% | |
| TGCATGGGACTAAAAACATA+GGG | - | chr1_1:54242757-54242776 | None:intergenic | 35.0% | |
| TTGCATGGGACTAAAAACAT+AGG | - | chr1_1:54242758-54242777 | None:intergenic | 35.0% | |
| TTTCTTATTGGGGTATGGAA+TGG | + | chr1_1:54242985-54243004 | Msa0029080:intron | 35.0% | |
| ! | CATTTCTGAAGACTTATTCG+TGG | - | chr1_1:54243313-54243332 | None:intergenic | 35.0% |
| ATACAGGCAAAGAAAGAAAC+AGG | - | chr1_1:54243424-54243443 | None:intergenic | 35.0% | |
| GTTTCTTTCTTTGCCTGTAT+AGG | + | chr1_1:54243424-54243443 | Msa0029080:intron | 35.0% | |
| GAAAGTGAAAGTGAAGATGA+AGG | + | chr1_1:54243709-54243728 | Msa0029080:CDS | 35.0% | |
| AAGTGAAAGTGAAGATGAAG+GGG | + | chr1_1:54243711-54243730 | Msa0029080:CDS | 35.0% | |
| GTTACTGTAACATTCAGATC+TGG | - | chr1_1:54243838-54243857 | None:intergenic | 35.0% | |
| AGAAAGTGAACAAACCTTCA+AGG | - | chr1_1:54243897-54243916 | None:intergenic | 35.0% | |
| ! | ATACCTTGCTTGCTTTGAAT+TGG | + | chr1_1:54243937-54243956 | Msa0029080:intron | 35.0% |
| CTGTTGAAGATACTGATGTT+GGG | + | chr1_1:54244040-54244059 | Msa0029080:CDS | 35.0% | |
| ATGAAACCAGTCAATTGCTT+GGG | + | chr1_1:54244196-54244215 | Msa0029080:CDS | 35.0% | |
| TTGCTTGGGGTAAATAATGA+TGG | + | chr1_1:54244210-54244229 | Msa0029080:CDS | 35.0% | |
| TATCTCTAGTGAAATTTCCC+AGG | + | chr1_1:54244248-54244267 | Msa0029080:CDS | 35.0% | |
| AAATCCATTTGATGTCTCCT+GGG | - | chr1_1:54244268-54244287 | None:intergenic | 35.0% | |
| AAAATCCATTTGATGTCTCC+TGG | - | chr1_1:54244269-54244288 | None:intergenic | 35.0% | |
| !! | AGGAGACATCAAATGGATTT+TGG | + | chr1_1:54244268-54244287 | Msa0029080:CDS | 35.0% |
| GTTGAAAATTTGGCATCTTC+AGG | + | chr1_1:54244339-54244358 | Msa0029080:CDS | 35.0% | |
| CAAACAATCTGAATGAAGAG+TGG | + | chr1_1:54244442-54244461 | Msa0029080:CDS | 35.0% | |
| ATTGATGAGAATACGACTCT+AGG | + | chr1_1:54244660-54244679 | Msa0029080:CDS | 35.0% | |
| TCTTATCAACTTGATGAGAG+AGG | + | chr1_1:54245009-54245028 | Msa0029080:CDS | 35.0% | |
| ! | ATCTAGAATATCAAACCCTC+CGG | - | chr1_1:54245083-54245102 | None:intergenic | 35.0% |
| GAGGGTTTGATATTCTAGAT+AGG | + | chr1_1:54245083-54245102 | Msa0029080:CDS | 35.0% | |
| AAGAAGCAAATGACATGGTT+CGG | + | chr1_1:54245140-54245159 | Msa0029080:intron | 35.0% | |
| !! | ACTTTTTATTTGCAGCATGC+TGG | + | chr1_1:54245256-54245275 | Msa0029080:intron | 35.0% |
| !! | CTTTTTATTTGCAGCATGCT+GGG | + | chr1_1:54245257-54245276 | Msa0029080:intron | 35.0% |
| !! | TTTTTATTTGCAGCATGCTG+GGG | + | chr1_1:54245258-54245277 | Msa0029080:intron | 35.0% |
| CTAATCGAGATTCAAGACTT+TGG | - | chr1_1:54245591-54245610 | None:intergenic | 35.0% | |
| GCTTGAAAAGCTTGAAAAAG+AGG | + | chr1_1:54245642-54245661 | Msa0029080:CDS | 35.0% | |
| ! | TCTAGAACAAGAAGCAATGA+TGG | + | chr1_1:54245684-54245703 | Msa0029080:CDS | 35.0% |
| ATTGGTCCTCTAATCTTTAG+GGG | + | chr1_1:54245858-54245877 | Msa0029080:intron | 35.0% | |
| TTGAGATCCTCTCCATTTAA+TGG | + | chr1_1:54245881-54245900 | Msa0029080:intron | 35.0% | |
| !! | AAATGGGAGTGTCCATTAAA+TGG | - | chr1_1:54245896-54245915 | None:intergenic | 35.0% |
| ! | ATTTAATGGACACTCCCATT+TGG | + | chr1_1:54245895-54245914 | Msa0029080:intron | 35.0% |
| GACTCTAAACTGGGTAAATA+TGG | - | chr1_1:54246162-54246181 | None:intergenic | 35.0% | |
| !! | TACTGTGTTGACTCTAAACT+GGG | - | chr1_1:54246171-54246190 | None:intergenic | 35.0% |
| ACGTAACTGTAAAGATGAGA+AGG | - | chr1_1:54246239-54246258 | None:intergenic | 35.0% | |
| TTGTCTCTGCAACATTCTAT+TGG | + | chr1_1:54246372-54246391 | Msa0029080:intron | 35.0% | |
| !! | ATTAGATGCCACAGTTTTGT+GGG | - | chr1_1:54246830-54246849 | None:intergenic | 35.0% |
| AAAACTGTGGCATCTAATGT+GGG | + | chr1_1:54246832-54246851 | Msa0029080:CDS | 35.0% | |
| CACAATGCTCTTATTGATGA+TGG | + | chr1_1:54246949-54246968 | Msa0029080:CDS | 35.0% | |
| ! | TTTTGACAAAGATGCAGAAC+TGG | + | chr1_1:54246981-54247000 | Msa0029080:CDS | 35.0% |
| ! | TTTTTCTTCTCTCCAAGAGA+AGG | + | chr1_1:54247022-54247041 | Msa0029080:three_prime_UTR | 35.0% |
| ! | TTTGAGGTATAAACAGCAGT+AGG | - | chr1_1:54247058-54247077 | None:intergenic | 35.0% |
| !! | GAGCTCTAGAACAACTTAAT+AGG | + | chr1_1:54247163-54247182 | Msa0029080:three_prime_UTR | 35.0% |
| !! | ACTTAATAGGGAGTCGTTTT+TGG | + | chr1_1:54247176-54247195 | Msa0029080:three_prime_UTR | 35.0% |
| !!! | CTTAATAGGGAGTCGTTTTT+GGG | + | chr1_1:54247177-54247196 | Msa0029080:three_prime_UTR | 35.0% |
| ! | CGATTAGTGAAAGAGTGTGT+GGG | - | chr1_1:54242192-54242211 | None:intergenic | 40.0% |
| ! | TTTTGCATGACGTAACTCAC+AGG | + | chr1_1:54242331-54242350 | Msa0029080:intron | 40.0% |
| TTTGCATGACGTAACTCACA+GGG | + | chr1_1:54242332-54242351 | Msa0029080:intron | 40.0% | |
| TACGTCAAATCGTCTCATCA+TGG | + | chr1_1:54242446-54242465 | Msa0029080:exon | 40.0% | |
| ACGTCAAATCGTCTCATCAT+GGG | + | chr1_1:54242447-54242466 | Msa0029080:exon | 40.0% | |
| ! | TTTGCTCGATATTTTTCCCC+AGG | + | chr1_1:54242491-54242510 | Msa0029080:CDS | 40.0% |
| TGCAAATTCCAAAACCGTAG+CGG | - | chr1_1:54242856-54242875 | None:intergenic | 40.0% | |
| !!! | CTACGGTTTTGGAATTTGCA+AGG | + | chr1_1:54242856-54242875 | Msa0029080:intron | 40.0% |
| GAGATATTACACTGGGAATG+TGG | + | chr1_1:54243364-54243383 | Msa0029080:intron | 40.0% | |
| AAGAAGCAGGTATCAGTAAC+AGG | - | chr1_1:54243394-54243413 | None:intergenic | 40.0% | |
| TCTTTCTTTGCCTGTATAGG+TGG | + | chr1_1:54243427-54243446 | Msa0029080:intron | 40.0% | |
| TAAAAGTAGACTCACCTTCC+AGG | - | chr1_1:54243601-54243620 | None:intergenic | 40.0% | |
| ! | TGAAGATGAAGGGGAGATTT+TGG | + | chr1_1:54243720-54243739 | Msa0029080:CDS | 40.0% |
| CAAAGCAAGCAAGGTATAGA+TGG | - | chr1_1:54243934-54243953 | None:intergenic | 40.0% | |
| ACACCAATTCAAAGCAAGCA+AGG | - | chr1_1:54243943-54243962 | None:intergenic | 40.0% | |
| TGAATCTTCAGATGAAAGCG+AGG | + | chr1_1:54243987-54244006 | Msa0029080:intron | 40.0% | |
| CCAACATCAGTATCTTCAAC+AGG | - | chr1_1:54244042-54244061 | None:intergenic | 40.0% | |
| CCTGTTGAAGATACTGATGT+TGG | + | chr1_1:54244039-54244058 | Msa0029080:CDS | 40.0% | |
| ! | GCAGCTTTGATGATTTGTAC+AGG | - | chr1_1:54244102-54244121 | None:intergenic | 40.0% |
| ATCCAGTCCACAAGAAGAAT+CGG | - | chr1_1:54244124-54244143 | None:intergenic | 40.0% | |
| ! | GGTTTCATCATTTAGCTCAC+TGG | - | chr1_1:54244184-54244203 | None:intergenic | 40.0% |
| GATGAAACCAGTCAATTGCT+TGG | + | chr1_1:54244195-54244214 | Msa0029080:CDS | 40.0% | |
| TGAAACCAGTCAATTGCTTG+GGG | + | chr1_1:54244197-54244216 | Msa0029080:CDS | 40.0% | |
| ATTTACCCCAAGCAATTGAC+TGG | - | chr1_1:54244205-54244224 | None:intergenic | 40.0% | |
| ATTTCCCAGGAGACATCAAA+TGG | + | chr1_1:54244261-54244280 | Msa0029080:CDS | 40.0% | |
| TTCAGGTGTATATCACGTGT+TGG | + | chr1_1:54244356-54244375 | Msa0029080:CDS | 40.0% | |
| TGTATATCACGTGTTGGAGA+CGG | + | chr1_1:54244362-54244381 | Msa0029080:CDS | 40.0% | |
| GGAACAGATAAATGTTGCAG+AGG | + | chr1_1:54244383-54244402 | Msa0029080:CDS | 40.0% | |
| ACAGATAAATGTTGCAGAGG+AGG | + | chr1_1:54244386-54244405 | Msa0029080:CDS | 40.0% | |
| GCTACTTCCATGACTAACAA+TGG | + | chr1_1:54244408-54244427 | Msa0029080:CDS | 40.0% | |
| TCCATGACTAACAATGGCAA+TGG | + | chr1_1:54244414-54244433 | Msa0029080:CDS | 40.0% | |
| TCCATTGCCATTGTTAGTCA+TGG | - | chr1_1:54244418-54244437 | None:intergenic | 40.0% | |
| ! | GTGGGTAGATTTTGTTCCTA+AGG | + | chr1_1:54244461-54244480 | Msa0029080:CDS | 40.0% |
| GCATCATAATCTTCAGCCTT+AGG | - | chr1_1:54244480-54244499 | None:intergenic | 40.0% | |
| ACTATCTGCGATACAAGTCA+CGG | + | chr1_1:54244501-54244520 | Msa0029080:CDS | 40.0% | |
| TCAAACAGTGTCTCAAGTTC+AGG | + | chr1_1:54244572-54244591 | Msa0029080:CDS | 40.0% | |
| CAAACAGTGTCTCAAGTTCA+GGG | + | chr1_1:54244573-54244592 | Msa0029080:CDS | 40.0% | |
| AAACAGTGTCTCAAGTTCAG+GGG | + | chr1_1:54244574-54244593 | Msa0029080:CDS | 40.0% | |
| TACTGCAGGCTGGATTATAT+TGG | - | chr1_1:54244686-54244705 | None:intergenic | 40.0% | |
| CTCAAGCATATCAATACTGC+AGG | - | chr1_1:54244700-54244719 | None:intergenic | 40.0% | |
| !! | CTGCAGTATTGATATGCTTG+AGG | + | chr1_1:54244698-54244717 | Msa0029080:CDS | 40.0% |
| TATCAACTTGATGAGAGAGG+TGG | + | chr1_1:54245012-54245031 | Msa0029080:CDS | 40.0% | |
| AGATGAGTATCAAGCCATGT+TGG | + | chr1_1:54245108-54245127 | Msa0029080:CDS | 40.0% | |
| CGCTAAAGAAGCAAATGACA+TGG | + | chr1_1:54245135-54245154 | Msa0029080:CDS | 40.0% | |
| TGGGGAAATTTATGGCGAAA+AGG | + | chr1_1:54245276-54245295 | Msa0029080:CDS | 40.0% | |
| TTATGGCGAAAAGGCAATTC+TGG | + | chr1_1:54245285-54245304 | Msa0029080:CDS | 40.0% | |
| GTCTCTTGCAATTCTTGATG+AGG | + | chr1_1:54245366-54245385 | Msa0029080:CDS | 40.0% | |
| AGCAGAAATGTTGAGGAAAG+CGG | + | chr1_1:54245615-54245634 | Msa0029080:CDS | 40.0% | |
| TTGAAAAAGAGGAATCGGCA+AGG | + | chr1_1:54245653-54245672 | Msa0029080:CDS | 40.0% | |
| TGAAAAAGAGGAATCGGCAA+GGG | + | chr1_1:54245654-54245673 | Msa0029080:CDS | 40.0% | |
| ! | ACAAGAAGCAATGATGGAGA+AGG | + | chr1_1:54245690-54245709 | Msa0029080:CDS | 40.0% |
| ! | AATGATGGAGAAGGTAGTAC+AGG | + | chr1_1:54245699-54245718 | Msa0029080:CDS | 40.0% |
| AGAAGGTAGTACAGGAATCA+CGG | + | chr1_1:54245707-54245726 | Msa0029080:CDS | 40.0% | |
| GGAAGCTGAAGAGAATTCAA+AGG | + | chr1_1:54245741-54245760 | Msa0029080:CDS | 40.0% | |
| ! | ATGAAATGGTTTGGAAGCAG+AGG | - | chr1_1:54245779-54245798 | None:intergenic | 40.0% |
| TCTCAACCCCTAAAGATTAG+AGG | - | chr1_1:54245867-54245886 | None:intergenic | 40.0% | |
| CATTGTCTCTCTCTCCAAAT+GGG | - | chr1_1:54245912-54245931 | None:intergenic | 40.0% | |
| TCATTGTCTCTCTCTCCAAA+TGG | - | chr1_1:54245913-54245932 | None:intergenic | 40.0% | |
| !! | TGATACACGTTGGCTTTGAT+TGG | + | chr1_1:54245978-54245997 | Msa0029080:intron | 40.0% |
| !! | GATACACGTTGGCTTTGATT+GGG | + | chr1_1:54245979-54245998 | Msa0029080:intron | 40.0% |
| ! | GGCTTTGATTGGGAATTACA+AGG | + | chr1_1:54245989-54246008 | Msa0029080:intron | 40.0% |
| TTGGGAGTTAGGAAAGGAAT+GGG | - | chr1_1:54246106-54246125 | None:intergenic | 40.0% | |
| ATTGGGAGTTAGGAAAGGAA+TGG | - | chr1_1:54246107-54246126 | None:intergenic | 40.0% | |
| CTTTGATTGGGAGTTAGGAA+AGG | - | chr1_1:54246112-54246131 | None:intergenic | 40.0% | |
| ! | ATAGGCTTTGATTGGGAGTT+AGG | - | chr1_1:54246117-54246136 | None:intergenic | 40.0% |
| !! | CTACTGTGTTGACTCTAAAC+TGG | - | chr1_1:54246172-54246191 | None:intergenic | 40.0% |
| TTAGAGTCAACACAGTAGTG+AGG | + | chr1_1:54246174-54246193 | Msa0029080:intron | 40.0% | |
| ! | GGCTTTTCCCCATTGTTTAA+TGG | + | chr1_1:54246195-54246214 | Msa0029080:intron | 40.0% |
| !! | GCTGTGAATGATTTGCTCAA+AGG | - | chr1_1:54246769-54246788 | None:intergenic | 40.0% |
| AGTTGCATCTTAGCTTCTTC+TGG | + | chr1_1:54246799-54246818 | Msa0029080:CDS | 40.0% | |
| ! | CATTAGATGCCACAGTTTTG+TGG | - | chr1_1:54246831-54246850 | None:intergenic | 40.0% |
| CAAAACTGTGGCATCTAATG+TGG | + | chr1_1:54246831-54246850 | Msa0029080:CDS | 40.0% | |
| CCCACCATTGAAAACAATTG+GGG | - | chr1_1:54246905-54246924 | None:intergenic | 40.0% | |
| ! | CCCCAATTGTTTTCAATGGT+GGG | + | chr1_1:54246902-54246921 | Msa0029080:CDS | 40.0% |
| CCCCACCATTGAAAACAATT+GGG | - | chr1_1:54246906-54246925 | None:intergenic | 40.0% | |
| ! | CCCAATTGTTTTCAATGGTG+GGG | + | chr1_1:54246903-54246922 | Msa0029080:CDS | 40.0% |
| TCCCCACCATTGAAAACAAT+TGG | - | chr1_1:54246907-54246926 | None:intergenic | 40.0% | |
| !! | ATGCTCTTATTGATGATGGG+TGG | + | chr1_1:54246953-54246972 | Msa0029080:CDS | 40.0% |
| !! | TGCTCTTATTGATGATGGGT+GGG | + | chr1_1:54246954-54246973 | Msa0029080:CDS | 40.0% |
| ACGCAATTTCCCTATGAGTC+TGG | - | chr1_1:54242130-54242149 | None:intergenic | 45.0% | |
| CGCGTGCAACAATTAACACT+AGG | + | chr1_1:54242161-54242180 | Msa0029080:five_prime_UTR | 45.0% | |
| ! | GCGATTAGTGAAAGAGTGTG+TGG | - | chr1_1:54242193-54242212 | None:intergenic | 45.0% |
| AATTCCAAAACCGTAGCGGT+AGG | - | chr1_1:54242852-54242871 | None:intergenic | 45.0% | |
| TATTACACTGGGAATGTGGC+TGG | + | chr1_1:54243368-54243387 | Msa0029080:intron | 45.0% | |
| AACCTGGAATCCACCTATAC+AGG | - | chr1_1:54243440-54243459 | None:intergenic | 45.0% | |
| AGTGGCTATTGAACACTCGA+AGG | + | chr1_1:54243469-54243488 | Msa0029080:CDS | 45.0% | |
| ACACTCGAAGGATGCTGATA+TGG | + | chr1_1:54243481-54243500 | Msa0029080:CDS | 45.0% | |
| TAGGGTTTGTATCCCGTGAA+GGG | - | chr1_1:54243565-54243584 | None:intergenic | 45.0% | |
| CCAGGTTCACTATGACTCTA+GGG | - | chr1_1:54243583-54243602 | None:intergenic | 45.0% | |
| TCCAGGTTCACTATGACTCT+AGG | - | chr1_1:54243584-54243603 | None:intergenic | 45.0% | |
| AGAGTCATAGTGAACCTGGA+AGG | + | chr1_1:54243584-54243603 | Msa0029080:CDS | 45.0% | |
| AAATCTGCCAGCTCTTCTTC+TGG | + | chr1_1:54243811-54243830 | Msa0029080:CDS | 45.0% | |
| !!! | GCTACAGGGCTTTTAACTTG+TGG | - | chr1_1:54243865-54243884 | None:intergenic | 45.0% |
| TCAGATGAAAGCGAGGATGA+AGG | + | chr1_1:54243994-54244013 | Msa0029080:intron | 45.0% | |
| CAGATGAAAGCGAGGATGAA+GGG | + | chr1_1:54243995-54244014 | Msa0029080:intron | 45.0% | |
| AAAGCGAGGATGAAGGGAAA+AGG | + | chr1_1:54244001-54244020 | Msa0029080:CDS | 45.0% | |
| TGGGTCGTCTTCATCATCAT+TGG | + | chr1_1:54244059-54244078 | Msa0029080:CDS | 45.0% | |
| !! | AAAGCTGCCGATTCTTCTTG+TGG | + | chr1_1:54244114-54244133 | Msa0029080:CDS | 45.0% |
| ! | TTTTGATCAGGGACGACTTG+TGG | + | chr1_1:54244308-54244327 | Msa0029080:CDS | 45.0% |
| ! | AGAGTCTTCTGACTCGATCA+AGG | - | chr1_1:54244547-54244566 | None:intergenic | 45.0% |
| AGCATATCAATACTGCAGGC+TGG | - | chr1_1:54244696-54244715 | None:intergenic | 45.0% | |
| TAGAATATCAAACCCTCCGG+TGG | - | chr1_1:54245080-54245099 | None:intergenic | 45.0% | |
| TTCTTTAGCGTGCACCAACA+TGG | - | chr1_1:54245125-54245144 | None:intergenic | 45.0% | |
| CAGCATGCTGGGGAAATTTA+TGG | + | chr1_1:54245268-54245287 | Msa0029080:intron | 45.0% | |
| AGTTAGTCGGAAAGATGCTC+GGG | - | chr1_1:54245473-54245492 | None:intergenic | 45.0% | |
| CAGTTAGTCGGAAAGATGCT+CGG | - | chr1_1:54245474-54245493 | None:intergenic | 45.0% | |
| TAGCTGCAGCAGAAATGTTG+AGG | + | chr1_1:54245608-54245627 | Msa0029080:CDS | 45.0% | |
| ! | GGAGTGTCCATTAAATGGAG+AGG | - | chr1_1:54245891-54245910 | None:intergenic | 45.0% |
| GGAAAAGATAAGGGAGCAGA+AGG | + | chr1_1:54246010-54246029 | Msa0029080:intron | 45.0% | |
| ACAGTTACGTGAGTTCCTGA+TGG | + | chr1_1:54246249-54246268 | Msa0029080:intron | 45.0% | |
| TGGTTCATCCCACAAAACTG+TGG | + | chr1_1:54246819-54246838 | Msa0029080:CDS | 45.0% | |
| ! | GCAGCCCCAATTGTTTTCAA+TGG | + | chr1_1:54246898-54246917 | Msa0029080:CDS | 45.0% |
| ! | GCCCCAATTGTTTTCAATGG+TGG | + | chr1_1:54246901-54246920 | Msa0029080:CDS | 45.0% |
| !! | TGTTTTCAATGGTGGGGAAG+AGG | + | chr1_1:54246909-54246928 | Msa0029080:CDS | 45.0% |
| !! | AAGAGCATTGTGTTCAGCCT+TGG | - | chr1_1:54246941-54246960 | None:intergenic | 45.0% |
| AAAGATGCAGAACTGGACTC+TGG | + | chr1_1:54246988-54247007 | Msa0029080:CDS | 45.0% | |
| AACAGGCATCAGCAAGAAGC+AGG | - | chr1_1:54243407-54243426 | None:intergenic | 50.0% | |
| ! | TGCCTGTATAGGTGGATTCC+AGG | + | chr1_1:54243435-54243454 | Msa0029080:intron | 50.0% |
| TTCCAGGTTGTTGAGAGCAG+TGG | + | chr1_1:54243451-54243470 | Msa0029080:CDS | 50.0% | |
| GAAGGATGCTGATATGGCTG+CGG | + | chr1_1:54243487-54243506 | Msa0029080:CDS | 50.0% | |
| GGCTGCGGAAGTTGTTCTTA+CGG | + | chr1_1:54243502-54243521 | Msa0029080:CDS | 50.0% | |
| AACTTCCAGCATCCCCTTCA+CGG | + | chr1_1:54243549-54243568 | Msa0029080:CDS | 50.0% | |
| AGGGTTTGTATCCCGTGAAG+GGG | - | chr1_1:54243564-54243583 | None:intergenic | 50.0% | |
| CTAGGGTTTGTATCCCGTGA+AGG | - | chr1_1:54243566-54243585 | None:intergenic | 50.0% | |
| CCCTAGAGTCATAGTGAACC+TGG | + | chr1_1:54243580-54243599 | Msa0029080:CDS | 50.0% | |
| CGAGGATGAAGGGAAAAGGT+TGG | + | chr1_1:54244005-54244024 | Msa0029080:CDS | 50.0% | |
| !! | TGCCGATTCTTCTTGTGGAC+TGG | + | chr1_1:54244119-54244138 | Msa0029080:CDS | 50.0% |
| CTGCGATACAAGTCACGGAT+TGG | + | chr1_1:54244506-54244525 | Msa0029080:CDS | 50.0% | |
| GATGAGAGAGGTGGAACATC+AGG | + | chr1_1:54245021-54245040 | Msa0029080:CDS | 50.0% | |
| TCAGGAGAAACTTGCAGAGC+AGG | + | chr1_1:54245039-54245058 | Msa0029080:CDS | 50.0% | |
| AATTCTGGCGACTGAGCTGA+AGG | + | chr1_1:54245300-54245319 | Msa0029080:CDS | 50.0% | |
| TGTCCAGCTTGTCTGGTGAA+AGG | + | chr1_1:54245338-54245357 | Msa0029080:CDS | 50.0% | |
| GTCCAGCTTGTCTGGTGAAA+GGG | + | chr1_1:54245339-54245358 | Msa0029080:CDS | 50.0% | |
| ATCCCTTTCACCAGACAAGC+TGG | - | chr1_1:54245344-54245363 | None:intergenic | 50.0% | |
| TAAGGGAGCAGAAGGAAGCA+AGG | + | chr1_1:54246018-54246037 | Msa0029080:CDS | 50.0% | |
| AAGGGAGCAGAAGGAAGCAA+GGG | + | chr1_1:54246019-54246038 | Msa0029080:CDS | 50.0% | |
| ATGATAGCTCCCACCTTGCA+TGG | + | chr1_1:54246042-54246061 | Msa0029080:CDS | 50.0% | |
| TGATAGCTCCCACCTTGCAT+GGG | + | chr1_1:54246043-54246062 | Msa0029080:CDS | 50.0% | |
| CAAAACAGACCTCCCATGCA+AGG | - | chr1_1:54246058-54246077 | None:intergenic | 50.0% | |
| ! | GTGAGTTCCTGATGGATCGT+GGG | + | chr1_1:54246257-54246276 | Msa0029080:CDS | 50.0% |
| ! | TGAAGTACTCGAGATCACCC+AGG | + | chr1_1:54246876-54246895 | Msa0029080:CDS | 50.0% |
| GAAAACAATTGGGGCTGCCT+GGG | - | chr1_1:54246896-54246915 | None:intergenic | 50.0% | |
| TGAAAACAATTGGGGCTGCC+TGG | - | chr1_1:54246897-54246916 | None:intergenic | 50.0% | |
| TATTGGGCCACCTACCGCTA+CGG | + | chr1_1:54242839-54242858 | Msa0029080:intron | 55.0% | |
| TCCAAAACCGTAGCGGTAGG+TGG | - | chr1_1:54242849-54242868 | None:intergenic | 55.0% | |
| AGCCACTGCTCTCAACAACC+TGG | - | chr1_1:54243456-54243475 | None:intergenic | 55.0% | |
| ACTTCCAGCATCCCCTTCAC+GGG | + | chr1_1:54243550-54243569 | Msa0029080:CDS | 55.0% | |
| ATCTGGGCCAGAAGAAGAGC+TGG | - | chr1_1:54243821-54243840 | None:intergenic | 55.0% | |
| GCCAATATAGCAGCGACCAC+CGG | + | chr1_1:54245061-54245080 | Msa0029080:CDS | 55.0% | |
| TCCGGTGGTCGCTGCTATAT+TGG | - | chr1_1:54245065-54245084 | None:intergenic | 55.0% | |
| AATATAGCAGCGACCACCGG+AGG | + | chr1_1:54245064-54245083 | Msa0029080:CDS | 55.0% | |
| ATATAGCAGCGACCACCGGA+GGG | + | chr1_1:54245065-54245084 | Msa0029080:CDS | 55.0% | |
| TCACGTCTGTCCAGCTTGTC+TGG | + | chr1_1:54245331-54245350 | Msa0029080:CDS | 55.0% | |
| GGAATCACGGAGACTACAGC+AGG | + | chr1_1:54245720-54245739 | Msa0029080:CDS | 55.0% | |
| ACAGACCTCCCATGCAAGGT+GGG | - | chr1_1:54246054-54246073 | None:intergenic | 55.0% | |
| AACAGACCTCCCATGCAAGG+TGG | - | chr1_1:54246055-54246074 | None:intergenic | 55.0% | |
| ! | CGTGAGTTCCTGATGGATCG+TGG | + | chr1_1:54246256-54246275 | Msa0029080:CDS | 55.0% |
| ! | GCCACCTACCGCTACGGTTT+TGG | + | chr1_1:54242845-54242864 | Msa0029080:intron | 60.0% |
| GTATCCCGTGAAGGGGATGC+TGG | - | chr1_1:54243557-54243576 | None:intergenic | 60.0% | |
| TAGCTCCCACCTTGCATGGG+AGG | + | chr1_1:54246046-54246065 | Msa0029080:CDS | 60.0% | |
| ! | GTTCCTGATGGATCGTGGGC+AGG | + | chr1_1:54246261-54246280 | Msa0029080:CDS | 60.0% |
| CAACCTGCCCACGATCCATC+AGG | - | chr1_1:54246267-54246286 | None:intergenic | 60.0% | |
| TGGGGAAGAGGAGAGCTCCA+AGG | + | chr1_1:54246921-54246940 | Msa0029080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54242116 | 54247268 | 54242116 | ID=Msa0029080;Name=Msa0029080 |
| chr1_1 | mRNA | 54242116 | 54247268 | 54242116 | ID=Msa0029080-mRNA-1;Parent=Msa0029080;Name=Msa0029080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=197|0.8|0.90|1|0.9|0.81|11|248|682 |
| chr1_1 | exon | 54242116 | 54242292 | 54242116 | ID=Msa0029080-mRNA-1:exon:16053;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54242445 | 54242512 | 54242445 | ID=Msa0029080-mRNA-1:exon:16054;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54243446 | 54243605 | 54243446 | ID=Msa0029080-mRNA-1:exon:16055;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54243707 | 54243901 | 54243707 | ID=Msa0029080-mRNA-1:exon:16056;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54243998 | 54244749 | 54243998 | ID=Msa0029080-mRNA-1:exon:16057;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54244983 | 54245156 | 54244983 | ID=Msa0029080-mRNA-1:exon:16058;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54245271 | 54245387 | 54245271 | ID=Msa0029080-mRNA-1:exon:16059;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54245583 | 54245762 | 54245583 | ID=Msa0029080-mRNA-1:exon:16060;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54246011 | 54246067 | 54246011 | ID=Msa0029080-mRNA-1:exon:16061;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54246253 | 54246299 | 54246253 | ID=Msa0029080-mRNA-1:exon:16062;Parent=Msa0029080-mRNA-1 |
| chr1_1 | exon | 54246702 | 54247268 | 54246702 | ID=Msa0029080-mRNA-1:exon:16063;Parent=Msa0029080-mRNA-1 |
| chr1_1 | five_prime_UTR | 54242116 | 54242292 | 54242116 | ID=Msa0029080-mRNA-1:five_prime_utr;Parent=Msa0029080-mRNA-1 |
| chr1_1 | five_prime_UTR | 54242445 | 54242464 | 54242445 | ID=Msa0029080-mRNA-1:five_prime_utr;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54242465 | 54242512 | 54242465 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54243446 | 54243605 | 54243446 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54243707 | 54243901 | 54243707 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54243998 | 54244749 | 54243998 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54244983 | 54245156 | 54244983 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54245271 | 54245387 | 54245271 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54245583 | 54245762 | 54245583 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54246011 | 54246067 | 54246011 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54246253 | 54246299 | 54246253 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | CDS | 54246702 | 54247020 | 54246702 | ID=Msa0029080-mRNA-1:cds;Parent=Msa0029080-mRNA-1 |
| chr1_1 | three_prime_UTR | 54247021 | 54247268 | 54247021 | ID=Msa0029080-mRNA-1:three_prime_utr;Parent=Msa0029080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
