Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0029170 | XP_003590705.2 | 94.076 | 996 | 46 | 3 | 1 | 987 | 3 | 994 | 0.0 | 1867 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0029170 | sp|Q9SF36|PDP2_ARATH | 52.604 | 192 | 90 | 1 | 354 | 544 | 196 | 387 | 2.24e-58 | 217 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0029170 | G7I2L8 | 94.076 | 996 | 46 | 3 | 1 | 987 | 3 | 994 | 0.0 | 1867 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0029170 | Msa1097230 | 0.804300 | 2.307837e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0029170 | MtrunA17_Chr1g0185901 | 94.076 | 996 | 46 | 3 | 1 | 987 | 3 | 994 | 0.0 | 1867 |
Msa0029170 | MtrunA17_Chr1g0170751 | 54.332 | 681 | 245 | 15 | 348 | 987 | 283 | 938 | 0.0 | 650 |
Msa0029170 | MtrunA17_Chr4g0018601 | 50.535 | 374 | 158 | 10 | 306 | 662 | 255 | 618 | 3.68e-107 | 346 |
Msa0029170 | MtrunA17_Chr2g0333291 | 32.656 | 640 | 324 | 17 | 355 | 958 | 258 | 826 | 1.17e-80 | 280 |
Msa0029170 | MtrunA17_Chr2g0303331 | 43.645 | 417 | 195 | 13 | 555 | 961 | 286 | 672 | 3.21e-78 | 269 |
Msa0029170 | MtrunA17_Chr1g0181651 | 47.162 | 229 | 100 | 4 | 352 | 578 | 315 | 524 | 4.13e-58 | 216 |
Msa0029170 | MtrunA17_Chr1g0181651 | 48.980 | 98 | 50 | 0 | 861 | 958 | 805 | 902 | 1.38e-19 | 94.7 |
Msa0029170 | MtrunA17_Chr2g0333801 | 47.682 | 151 | 58 | 1 | 355 | 505 | 7 | 136 | 7.48e-45 | 158 |
Msa0029170 | MtrunA17_Chr6g0450151 | 36.957 | 184 | 113 | 3 | 355 | 537 | 272 | 453 | 9.42e-29 | 124 |
Msa0029170 | MtrunA17_Chr6g0450071 | 36.957 | 184 | 113 | 3 | 355 | 537 | 212 | 393 | 6.06e-27 | 117 |
Msa0029170 | MtrunA17_Chr1g0192031 | 34.392 | 189 | 121 | 3 | 344 | 529 | 62 | 250 | 1.16e-24 | 108 |
Msa0029170 | MtrunA17_Chr7g0272631 | 32.584 | 178 | 117 | 3 | 355 | 529 | 87 | 264 | 6.48e-24 | 108 |
Msa0029170 | MtrunA17_Chr1g0181641 | 43.902 | 82 | 44 | 1 | 878 | 959 | 35 | 114 | 1.40e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0029170 | AT3G09670.2 | 52.604 | 192 | 90 | 1 | 354 | 544 | 196 | 387 | 2.27e-59 | 217 |
Msa0029170 | AT3G09670.1 | 52.604 | 192 | 90 | 1 | 354 | 544 | 196 | 387 | 2.27e-59 | 217 |
Msa0029170 | AT5G02950.1 | 47.090 | 189 | 99 | 1 | 347 | 534 | 87 | 275 | 5.85e-52 | 194 |
Msa0029170 | AT5G02950.1 | 56.098 | 82 | 36 | 0 | 875 | 956 | 542 | 623 | 1.35e-19 | 94.7 |
Msa0029170 | AT5G02950.2 | 47.090 | 189 | 99 | 1 | 347 | 534 | 87 | 275 | 5.85e-52 | 194 |
Msa0029170 | AT5G02950.2 | 56.098 | 82 | 36 | 0 | 875 | 956 | 542 | 623 | 1.35e-19 | 94.7 |
Msa0029170 | AT3G54760.2 | 34.251 | 327 | 160 | 9 | 658 | 974 | 472 | 753 | 3.22e-42 | 166 |
Msa0029170 | AT3G54760.1 | 34.251 | 327 | 160 | 9 | 658 | 974 | 503 | 784 | 5.32e-42 | 166 |
Msa0029170 | AT5G40340.1 | 41.209 | 182 | 101 | 6 | 355 | 533 | 125 | 303 | 3.08e-29 | 126 |
Msa0029170 | AT5G40340.2 | 41.209 | 182 | 101 | 6 | 355 | 533 | 125 | 303 | 4.03e-29 | 126 |
Msa0029170 | AT3G05430.1 | 41.071 | 112 | 66 | 0 | 355 | 466 | 133 | 244 | 4.77e-22 | 103 |
Msa0029170 | AT3G05430.2 | 41.071 | 112 | 66 | 0 | 355 | 466 | 133 | 244 | 4.98e-22 | 103 |
Msa0029170 | AT5G27650.1 | 33.708 | 178 | 115 | 3 | 355 | 529 | 171 | 348 | 1.04e-21 | 102 |
Msa0029170 | AT3G27860.2 | 31.034 | 290 | 170 | 11 | 352 | 629 | 58 | 329 | 2.72e-19 | 94.0 |
Msa0029170 | AT3G27860.1 | 31.034 | 290 | 170 | 11 | 352 | 629 | 58 | 329 | 2.72e-19 | 94.0 |
Msa0029170 | AT3G48187.1 | 26.977 | 215 | 131 | 6 | 333 | 541 | 83 | 277 | 8.09e-13 | 73.2 |
Find 233 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGGGAAAGTTGGTATTTC+TGG | 0.134890 | 1_1:+54404839 | Msa0029170:CDS |
TGCTATTTGGTAGCATATTA+TGG | 0.149078 | 1_1:+54405433 | Msa0029170:CDS |
AGCAATAGTCTTTCGTTTCT+TGG | 0.161677 | 1_1:-54406169 | None:intergenic |
GTCAAAAGACGGGTCGAATT+TGG | 0.171080 | 1_1:+54405580 | Msa0029170:CDS |
GCTAAACAGTTCAACATATT+TGG | 0.174863 | 1_1:+54407071 | Msa0029170:CDS |
GGAGTTTCTTCTCTGATTTC+AGG | 0.181757 | 1_1:+54406550 | Msa0029170:CDS |
ACAAAACAATCATTTAAAAT+TGG | 0.223629 | 1_1:+54406264 | Msa0029170:CDS |
TTCTGAGTCTCCTCAAAATT+AGG | 0.233682 | 1_1:-54406417 | None:intergenic |
CCCTCTATGTTGAAATATTC+TGG | 0.237737 | 1_1:+54406327 | Msa0029170:CDS |
GCTTGCATTCTACCGGTTAA+AGG | 0.242276 | 1_1:+54405828 | Msa0029170:CDS |
TTTATCAGTATCATTAATTA+AGG | 0.246050 | 1_1:-54405908 | None:intergenic |
TTCTGTGAATGATCTGGTTT+GGG | 0.252633 | 1_1:+54405321 | Msa0029170:CDS |
TCTGTCTCAGATTCCTTTAA+AGG | 0.257461 | 1_1:-54406975 | None:intergenic |
AAAGCCTCCAGTTGGAAAAT+TGG | 0.259834 | 1_1:-54405770 | None:intergenic |
TATAGTTTCTTGAATGTTAT+AGG | 0.262506 | 1_1:+54406528 | Msa0029170:CDS |
GGACCTGGTAGTTGGGGTTT+TGG | 0.265004 | 1_1:+54404349 | Msa0029170:CDS |
CTACAAAAGTTGGCACTAAA+AGG | 0.274187 | 1_1:+54406616 | Msa0029170:CDS |
TCACAGGAAGAGAAGGAAAT+TGG | 0.277243 | 1_1:+54405034 | Msa0029170:CDS |
TCAGACAAAGAGAAGGAAAT+TGG | 0.297811 | 1_1:+54405190 | Msa0029170:CDS |
GCCGATGCGCAAGCTGCTTT+CGG | 0.300794 | 1_1:+54407044 | Msa0029170:CDS |
GGAGGAGGTTGATGAAATAT+TGG | 0.305593 | 1_1:+54404772 | Msa0029170:CDS |
TTCTTCTGCCTTTCACCCTT+GGG | 0.310129 | 1_1:-54406209 | None:intergenic |
TTTCTTCTGCCTTTCACCCT+TGG | 0.316743 | 1_1:-54406210 | None:intergenic |
ATCATTGTGGCCAGTGATCC+TGG | 0.318358 | 1_1:+54406579 | Msa0029170:CDS |
TTATGACAAGATTAATCTTC+AGG | 0.318972 | 1_1:+54405633 | Msa0029170:CDS |
TGTTCCAGGAAACAGTATTT+TGG | 0.322743 | 1_1:+54406813 | Msa0029170:CDS |
AACATTTGACTTTGATGATC+TGG | 0.323353 | 1_1:+54406668 | Msa0029170:CDS |
CATGTCCCCGTGAAGAGTTC+AGG | 0.329020 | 1_1:+54405274 | Msa0029170:CDS |
TCTGAGTCTCCTCAAAATTA+GGG | 0.332007 | 1_1:-54406416 | None:intergenic |
GATGACTGATGATGTTATTC+AGG | 0.335880 | 1_1:+54405123 | Msa0029170:CDS |
GCCACCAAAATACTGTTTCC+TGG | 0.342411 | 1_1:-54406817 | None:intergenic |
ACCTCCACAATATTGTAATT+CGG | 0.343928 | 1_1:-54405866 | None:intergenic |
ATTACAATATTGTGGAGGTT+TGG | 0.350069 | 1_1:+54405870 | Msa0029170:CDS |
GCTATTTGGTAGCATATTAT+GGG | 0.350097 | 1_1:+54405434 | Msa0029170:CDS |
CCTCCACAATATTGTAATTC+GGG | 0.351991 | 1_1:-54405865 | None:intergenic |
ATCTTGTCATAAGTATCTTT+AGG | 0.354335 | 1_1:-54405622 | None:intergenic |
TTTCTGTGAATGATCTGGTT+TGG | 0.357507 | 1_1:+54405320 | Msa0029170:CDS |
CTGAGAAGGACCTGGTAGTT+GGG | 0.363404 | 1_1:+54404342 | Msa0029170:CDS |
TATAGAGGTGGAGGGATCTA+TGG | 0.364058 | 1_1:+54404307 | Msa0029170:CDS |
GGTCTAAGCTGAAGTCCTTT+AGG | 0.367030 | 1_1:+54405482 | Msa0029170:CDS |
ATAGTTTCTTGAATGTTATA+GGG | 0.367131 | 1_1:+54406529 | Msa0029170:CDS |
CAAGTTGTTGGGTCATTAGA+AGG | 0.367450 | 1_1:+54404671 | Msa0029170:CDS |
TCAAAAGACGGGTCGAATTT+GGG | 0.377860 | 1_1:+54405581 | Msa0029170:CDS |
TGAGAAGGAGGTAGTTGAGT+TGG | 0.387816 | 1_1:+54404505 | Msa0029170:CDS |
TGATGAGTGATGATGTTATT+CGG | 0.391524 | 1_1:+54404963 | Msa0029170:CDS |
CGAGAATGAGGTAGTTGAGT+TGG | 0.391904 | 1_1:+54404700 | Msa0029170:CDS |
CTTGCATTCTACCGGTTAAA+GGG | 0.397273 | 1_1:+54405829 | Msa0029170:CDS |
AAGTATTCCATAAGCTTCTC+AGG | 0.401659 | 1_1:-54405736 | None:intergenic |
ATAGATCCCTCCACCTCTAT+AGG | 0.406908 | 1_1:-54404305 | None:intergenic |
AAAGATGTGAATGTTGCTAT+TGG | 0.407198 | 1_1:+54404623 | Msa0029170:CDS |
TAATCACTGTGGGTAGAATC+TGG | 0.412595 | 1_1:-54406099 | None:intergenic |
AACTGGAGGCTTTGATCGAT+TGG | 0.414850 | 1_1:+54405780 | Msa0029170:CDS |
GATGAGTGATGATGTTATTC+GGG | 0.418737 | 1_1:+54404964 | Msa0029170:CDS |
GAGGAGGAGGAGGATTGTCT+AGG | 0.418908 | 1_1:-54404277 | None:intergenic |
AGTTAATGACGCCGATGAAC+AGG | 0.420178 | 1_1:+54405066 | Msa0029170:CDS |
AGGGTTGCTAGCCAACTTAC+TGG | 0.421445 | 1_1:+54406300 | Msa0029170:CDS |
CTTGCGACGGGATTGGTTTG+TGG | 0.423101 | 1_1:-54406007 | None:intergenic |
AGGAGGAGGAGGATTGTCTA+GGG | 0.423666 | 1_1:-54404276 | None:intergenic |
ATTTAATGATGCCGAAGAAC+AGG | 0.424640 | 1_1:+54405222 | Msa0029170:CDS |
AAGAAACTATAATCTCCCTT+TGG | 0.428080 | 1_1:-54406516 | None:intergenic |
GAAGGGGCGCGCTCATAGTC+TGG | 0.428448 | 1_1:-54406750 | None:intergenic |
TTCGTTTCTTGGAAAGGATA+GGG | 0.437828 | 1_1:-54406158 | None:intergenic |
AATGATCAAGATGCAATTCC+TGG | 0.437834 | 1_1:-54407172 | None:intergenic |
TCAGACAAAGAGAAGGAAAT+CGG | 0.440506 | 1_1:+54404875 | Msa0029170:CDS |
AGGACAGATATTTGATCCTT+CGG | 0.441893 | 1_1:+54405372 | Msa0029170:CDS |
GAGAAGGAGGTAGTTGAGTT+GGG | 0.442262 | 1_1:+54404506 | Msa0029170:CDS |
AGGTGGAGGGATCTATGGTT+AGG | 0.442305 | 1_1:+54404312 | Msa0029170:CDS |
TTGAAGATTCTCAAGTTGTT+GGG | 0.443017 | 1_1:+54404660 | Msa0029170:CDS |
TCCTCCTCCTATAGAGGTGG+AGG | 0.447994 | 1_1:+54404298 | Msa0029170:CDS |
CATAAGCTTCTCAGGTGAAA+AGG | 0.450721 | 1_1:-54405728 | None:intergenic |
TTTGAAGATTCTCAAGTTGT+TGG | 0.451500 | 1_1:+54404659 | Msa0029170:CDS |
GATTCGACAAGAGCCAAGTT+TGG | 0.453596 | 1_1:+54405672 | Msa0029170:CDS |
GAATCTGGATTCCCATTGGC+TGG | 0.453644 | 1_1:-54406084 | None:intergenic |
GTTTACGCTTGCGACGGGAT+TGG | 0.454998 | 1_1:-54406014 | None:intergenic |
TGAAGGTAAGAGTGAGAAGG+AGG | 0.456381 | 1_1:+54404493 | Msa0029170:CDS |
GATTTCTTTCCCAGGATCAC+TGG | 0.460398 | 1_1:-54406589 | None:intergenic |
TCCAGAATATTTCAACATAG+AGG | 0.462499 | 1_1:-54406328 | None:intergenic |
CTACGTGTATAAACATGAAC+AGG | 0.463107 | 1_1:-54406786 | None:intergenic |
AATGGTGATCAAACTGGAAC+CGG | 0.464649 | 1_1:+54405973 | Msa0029170:CDS |
ACCTCTATAGGAGGAGGAGG+AGG | 0.467278 | 1_1:-54404293 | None:intergenic |
ATAAGTATCTTTAGGTATGC+AGG | 0.467302 | 1_1:-54405614 | None:intergenic |
GAGTCAGATGAAGGGAAAGT+TGG | 0.469831 | 1_1:+54404989 | Msa0029170:CDS |
AAGTTCAAAACAAGTTCAGC+AGG | 0.470527 | 1_1:-54406891 | None:intergenic |
AGCAAGAGTAACCCTTTAAC+CGG | 0.471478 | 1_1:-54405840 | None:intergenic |
TTCAGGTTGTTGAAAACTGT+GGG | 0.472229 | 1_1:+54405650 | Msa0029170:CDS |
GAGAATGAGGTAGTTGAGTT+GGG | 0.475736 | 1_1:+54404701 | Msa0029170:CDS |
ATTCAGGTTGAGTCAGATGA+AGG | 0.475737 | 1_1:+54405139 | Msa0029170:CDS |
ATACACGTAGGTCGTGTTCC+AGG | 0.478499 | 1_1:+54406799 | Msa0029170:CDS |
GAGGTAGTTGAGTTGGGTGG+TGG | 0.478840 | 1_1:+54404512 | Msa0029170:CDS |
AGAAGCCATCCATGGTGGCC+AGG | 0.480090 | 1_1:+54405352 | Msa0029170:CDS |
CTCAGCTGCTTGCATTCTAC+CGG | 0.481107 | 1_1:+54405821 | Msa0029170:CDS |
GCAGAAGAAGAAGGAGGAGG+AGG | 0.481683 | 1_1:+54404757 | Msa0029170:CDS |
GAGTCGGATGGAGGGAAAGT+TGG | 0.483400 | 1_1:+54404830 | Msa0029170:CDS |
TAGTCTTTCGTTTCTTGGAA+AGG | 0.484292 | 1_1:-54406164 | None:intergenic |
TTCTCATCTATATAACCAGC+AGG | 0.485307 | 1_1:-54406864 | None:intergenic |
GTTATTTAAGCTTGTTTCTG+AGG | 0.490022 | 1_1:-54406934 | None:intergenic |
ACTGAGAAGGACCTGGTAGT+TGG | 0.492864 | 1_1:+54404341 | Msa0029170:CDS |
GAAATCTTACCTACAAAAGT+TGG | 0.497550 | 1_1:+54406606 | Msa0029170:CDS |
TCAGAAGATTCACCTATGGC+TGG | 0.498794 | 1_1:-54406645 | None:intergenic |
ATAAGAGAAATGTGACCTAA+AGG | 0.499413 | 1_1:-54405497 | None:intergenic |
GGAACGTACGCGTGGAATGA+AGG | 0.499626 | 1_1:+54405460 | Msa0029170:CDS |
ATTCGGGTTGAGTCAGATGA+AGG | 0.500442 | 1_1:+54404980 | Msa0029170:CDS |
TGAGAAGATTGATGATTCAC+AGG | 0.500630 | 1_1:+54405018 | Msa0029170:CDS |
ATCAGTACGCTGACGTCCCA+AGG | 0.502539 | 1_1:+54406193 | Msa0029170:CDS |
GATTCTGATTTGTGCATACA+AGG | 0.502676 | 1_1:+54404371 | Msa0029170:CDS |
CTCCTCAAAATTAGGGGAGA+AGG | 0.503090 | 1_1:-54406409 | None:intergenic |
TCTCTGATGGCAGATGGTAA+TGG | 0.503504 | 1_1:+54406357 | Msa0029170:CDS |
GACCACATTAAGTTCAACAT+TGG | 0.504411 | 1_1:-54407195 | None:intergenic |
GCCGAAAGCAGCTTGCGCAT+CGG | 0.506845 | 1_1:-54407045 | None:intergenic |
ATTATGTTTACGCTTGCGAC+GGG | 0.508564 | 1_1:-54406019 | None:intergenic |
GAAGCAACTTTGCATAAAGA+TGG | 0.511858 | 1_1:+54404539 | Msa0029170:CDS |
GAGTGCTGTAGATTCTGCTT+TGG | 0.512585 | 1_1:+54405552 | Msa0029170:CDS |
CGTAAACATAATCTAAAGGT+TGG | 0.517378 | 1_1:+54406030 | Msa0029170:CDS |
TTTGCTATCTTTACTTCAGT+GGG | 0.521231 | 1_1:+54406482 | Msa0029170:CDS |
TTGGTAGCATATTATGGGGA+TGG | 0.521750 | 1_1:+54405439 | Msa0029170:CDS |
TCTGTCCTGGCCACCATGGA+TGG | 0.523479 | 1_1:-54405357 | None:intergenic |
TTTCGTTTCTTGGAAAGGAT+AGG | 0.527147 | 1_1:-54406159 | None:intergenic |
ATGTCCCCGTGAAGAGTTCA+GGG | 0.527519 | 1_1:+54405275 | Msa0029170:CDS |
ATTTGCTATCTTTACTTCAG+TGG | 0.528385 | 1_1:+54406481 | Msa0029170:CDS |
GCAATGGCCTCATCATCATT+CGG | 0.528387 | 1_1:-54406123 | None:intergenic |
TCCTCCTCCTCCTATAGAGG+TGG | 0.529173 | 1_1:+54404295 | Msa0029170:CDS |
AGGAAGCAAGCGGGCAAGAG+TGG | 0.530153 | 1_1:+54407007 | Msa0029170:CDS |
ATGAGGTAGTTGAGTTGGGT+GGG | 0.530499 | 1_1:+54404705 | Msa0029170:CDS |
TAATAAGTGACGATGTTACT+CGG | 0.531017 | 1_1:+54404804 | Msa0029170:CDS |
GGTCTTACTATTCGAGCTGA+AGG | 0.531948 | 1_1:+54404464 | Msa0029170:CDS |
TCAACTCTATGTACCAAACT+TGG | 0.533287 | 1_1:-54405685 | None:intergenic |
GTTGCTATTGGAGGAACTGT+AGG | 0.533303 | 1_1:+54404635 | Msa0029170:CDS |
GAACGTACGCGTGGAATGAA+GGG | 0.534286 | 1_1:+54405461 | Msa0029170:CDS |
TTATTTAAGCTTGTTTCTGA+GGG | 0.535145 | 1_1:-54406933 | None:intergenic |
TGAAGCAACTTCGAAAACAT+TGG | 0.535299 | 1_1:+54404730 | Msa0029170:CDS |
TTGCATAAAGATGGTGTTTG+TGG | 0.535887 | 1_1:+54404548 | Msa0029170:CDS |
TTTACTTCAGTGGGTAGCAC+AGG | 0.536694 | 1_1:+54406491 | Msa0029170:CDS |
CAAGCGTAAACATAATCTAA+AGG | 0.537630 | 1_1:+54406026 | Msa0029170:CDS |
TGATGATTCACAGGAAGAGA+AGG | 0.537658 | 1_1:+54405027 | Msa0029170:CDS |
GAGTCAGATGAAGGGAAAGT+TGG | 0.538889 | 1_1:+54405148 | Msa0029170:CDS |
GGTGGAGGGATCTATGGTTA+GGG | 0.541957 | 1_1:+54404313 | Msa0029170:CDS |
GTAGGTAAGATTTCTTTCCC+AGG | 0.542544 | 1_1:-54406597 | None:intergenic |
AATGAGGTAGTTGAGTTGGG+TGG | 0.543283 | 1_1:+54404704 | Msa0029170:CDS |
TGAGCAGAAGAAGAAGGAGG+AGG | 0.543585 | 1_1:+54404754 | Msa0029170:CDS |
CACTCGGTGAGTAGTTAAGC+TGG | 0.544989 | 1_1:-54407112 | None:intergenic |
TCAGGGAAAAGTCGTAGAGA+AGG | 0.545278 | 1_1:+54405292 | Msa0029170:CDS |
GAAGGATCAAATATCTGTCC+TGG | 0.546699 | 1_1:-54405370 | None:intergenic |
TCCTCAAAATTAGGGGAGAA+GGG | 0.547058 | 1_1:-54406408 | None:intergenic |
CGATGTTACTCGGGTTGAGT+CGG | 0.551257 | 1_1:+54404814 | Msa0029170:CDS |
CCCTCCACCTCTATAGGAGG+AGG | 0.551375 | 1_1:-54404299 | None:intergenic |
TGTTTCAGAAGATTCACCTA+TGG | 0.552514 | 1_1:-54406649 | None:intergenic |
TTGCTATTGGAGGAACTGTA+GGG | 0.554114 | 1_1:+54404636 | Msa0029170:CDS |
GCTTGTTAGAACCAGCCAAT+GGG | 0.554154 | 1_1:+54406073 | Msa0029170:CDS |
AAATTGGTGATTGTATCCGT+AGG | 0.554514 | 1_1:+54406280 | Msa0029170:CDS |
TCTAGAGATGAAAACTCTGT+AGG | 0.554887 | 1_1:-54406456 | None:intergenic |
TTCCAATGTTGAACTTAATG+TGG | 0.555710 | 1_1:+54407193 | Msa0029170:CDS |
GGGTTGCTAGCCAACTTACT+GGG | 0.555983 | 1_1:+54406301 | Msa0029170:CDS |
TCCTTCGGATGCATCTGTGC+AGG | 0.556154 | 1_1:+54405387 | Msa0029170:CDS |
TCTGAGACAGAAATTGATAG+AGG | 0.558240 | 1_1:+54406987 | Msa0029170:CDS |
GAACAGGTAAAAGCATCAGC+TGG | 0.558343 | 1_1:+54405082 | Msa0029170:CDS |
AATTGGTGATTGTATCCGTA+GGG | 0.559642 | 1_1:+54406281 | Msa0029170:CDS |
AGAAGGTAAGAGCGAGAATG+AGG | 0.560204 | 1_1:+54404688 | Msa0029170:CDS |
AATCCAAAACCCCAACTACC+AGG | 0.560254 | 1_1:-54404352 | None:intergenic |
TCGTTTCTTGGAAAGGATAG+GGG | 0.562588 | 1_1:-54406157 | None:intergenic |
GACACTTGTTGCATGCAGAA+TGG | 0.563729 | 1_1:+54406693 | Msa0029170:CDS |
CCAGAATATTTCAACATAGA+GGG | 0.564536 | 1_1:-54406327 | None:intergenic |
GTTACTCGGGTTGAGTCGGA+TGG | 0.565075 | 1_1:+54404818 | Msa0029170:CDS |
TGAGAAGGACCTGGTAGTTG+GGG | 0.565127 | 1_1:+54404343 | Msa0029170:CDS |
GAATGATCTGGTTTGGGGCA+AGG | 0.565852 | 1_1:+54405327 | Msa0029170:CDS |
AAGACGGGTCGAATTTGGGC+TGG | 0.567552 | 1_1:+54405585 | Msa0029170:CDS |
TCCACCTCTATAGGAGGAGG+AGG | 0.568775 | 1_1:-54404296 | None:intergenic |
GCTGACGTCCCAAGGGTGAA+AGG | 0.569331 | 1_1:+54406201 | Msa0029170:CDS |
TTTCAGGAATTCAATCATTG+TGG | 0.569656 | 1_1:+54406566 | Msa0029170:CDS |
TAGAGGGCGACCCAGTAAGT+TGG | 0.571586 | 1_1:-54406311 | None:intergenic |
CTTCAGGTTGTTGAAAACTG+TGG | 0.571723 | 1_1:+54405649 | Msa0029170:CDS |
GAACAGGCAAAAGCATCAGA+TGG | 0.571998 | 1_1:+54404923 | Msa0029170:CDS |
GTGGGTAGCACAGGAACCAA+AGG | 0.573631 | 1_1:+54406500 | Msa0029170:CDS |
ATTGGATGAGCAGAAGAAGA+AGG | 0.575488 | 1_1:+54404748 | Msa0029170:CDS |
GAACAGGTAAAAGCATCAGA+TGG | 0.576894 | 1_1:+54405238 | Msa0029170:CDS |
AAAATTAGGGGAGAAGGGAT+CGG | 0.577244 | 1_1:-54406403 | None:intergenic |
TTCTGGAGACACTTCTCTGA+TGG | 0.577268 | 1_1:+54406344 | Msa0029170:CDS |
TCATTGTGGCCAGTGATCCT+GGG | 0.577427 | 1_1:+54406580 | Msa0029170:CDS |
GATGTGAATGTTGCTATTGG+AGG | 0.577509 | 1_1:+54404626 | Msa0029170:CDS |
AATCGATCAAAGCCTCCAGT+TGG | 0.585502 | 1_1:-54405778 | None:intergenic |
CTTTGGATGAAGTCAAAAGA+CGG | 0.588987 | 1_1:+54405569 | Msa0029170:CDS |
CTCGGGTTGAGTCGGATGGA+GGG | 0.591613 | 1_1:+54404822 | Msa0029170:CDS |
AGCTTGTTAGAACCAGCCAA+TGG | 0.592127 | 1_1:+54406072 | Msa0029170:CDS |
TGATGATTCAGACAAAGAGA+AGG | 0.592792 | 1_1:+54404868 | Msa0029170:CDS |
GATTGATTCAGACAAAGAGA+AGG | 0.593485 | 1_1:+54405183 | Msa0029170:CDS |
ACTCGGGTTGAGTCGGATGG+AGG | 0.594408 | 1_1:+54404821 | Msa0029170:CDS |
CCCGAATTACAATATTGTGG+AGG | 0.595704 | 1_1:+54405865 | Msa0029170:CDS |
CAGGGAAAAGTCGTAGAGAA+GGG | 0.596276 | 1_1:+54405293 | Msa0029170:CDS |
GCCTGCACAGATGCATCCGA+AGG | 0.596912 | 1_1:-54405388 | None:intergenic |
TGCTGAGCTGAATCATGATG+TGG | 0.597423 | 1_1:+54404406 | Msa0029170:CDS |
TTTGGATGAAGTCAAAAGAC+GGG | 0.598056 | 1_1:+54405570 | Msa0029170:CDS |
GGTAGAATCTGGATTCCCAT+TGG | 0.599521 | 1_1:-54406088 | None:intergenic |
AATAAGTGACGATGTTACTC+GGG | 0.599832 | 1_1:+54404805 | Msa0029170:CDS |
GACACTTCTCTGATGGCAGA+TGG | 0.600480 | 1_1:+54406351 | Msa0029170:CDS |
TGGGTAGCACAGGAACCAAA+GGG | 0.603458 | 1_1:+54406501 | Msa0029170:CDS |
GATCCCTCCACCTCTATAGG+AGG | 0.609680 | 1_1:-54404302 | None:intergenic |
AAGGAGGTAGTTGAGTTGGG+TGG | 0.611624 | 1_1:+54404509 | Msa0029170:CDS |
CTATTTGGTAGCATATTATG+GGG | 0.612060 | 1_1:+54405435 | Msa0029170:CDS |
GGTTCAAGGGGATAAAGATG+TGG | 0.613142 | 1_1:+54404442 | Msa0029170:CDS |
AATTGATAGAGGAAGCAAGC+GGG | 0.613209 | 1_1:+54406998 | Msa0029170:CDS |
ATCATTCGGATAATCACTGT+GGG | 0.613540 | 1_1:-54406109 | None:intergenic |
GCAAGGTGAGAAGCCATCCA+TGG | 0.614983 | 1_1:+54405344 | Msa0029170:CDS |
TTGCCCGAATTACAATATTG+TGG | 0.615408 | 1_1:+54405862 | Msa0029170:CDS |
CCTCCTCCTATAGAGGTGGA+GGG | 0.617666 | 1_1:+54404299 | Msa0029170:CDS |
GGTTAGGGATGATACTGAGA+AGG | 0.619186 | 1_1:+54404328 | Msa0029170:CDS |
GATTATGTTTACGCTTGCGA+CGG | 0.620559 | 1_1:-54406020 | None:intergenic |
AAAAGGAAGAAACCAGCCAT+AGG | 0.628089 | 1_1:+54406633 | Msa0029170:CDS |
GTTCAAGGGGATAAAGATGT+GGG | 0.628591 | 1_1:+54404443 | Msa0029170:CDS |
GTCTTACTATTCGAGCTGAA+GGG | 0.628703 | 1_1:+54404465 | Msa0029170:CDS |
AAGCTTCTCAGGTGAAAAGG+AGG | 0.628731 | 1_1:-54405725 | None:intergenic |
TTCAGGTTGAGTCAGATGAA+GGG | 0.631536 | 1_1:+54405140 | Msa0029170:CDS |
TAAGTTGGCTAGCAACCCTA+CGG | 0.637189 | 1_1:-54406296 | None:intergenic |
GTTCAAAACAAGTTCAGCAG+GGG | 0.637786 | 1_1:-54406889 | None:intergenic |
TCAGTACGCTGACGTCCCAA+GGG | 0.638239 | 1_1:+54406194 | Msa0029170:CDS |
TTCGGGTTGAGTCAGATGAA+GGG | 0.639871 | 1_1:+54404981 | Msa0029170:CDS |
TCTGTGAATGATCTGGTTTG+GGG | 0.640253 | 1_1:+54405322 | Msa0029170:CDS |
CTGAGTCTCCTCAAAATTAG+GGG | 0.644036 | 1_1:-54406415 | None:intergenic |
AATATCTGTCCTGGCCACCA+TGG | 0.644606 | 1_1:-54405361 | None:intergenic |
ATTGGAGCTTACAACAGCGA+AGG | 0.645925 | 1_1:+54405798 | Msa0029170:CDS |
TGATTATCCGAATGATGATG+AGG | 0.647957 | 1_1:+54406116 | Msa0029170:CDS |
GGATGATACTGAGAAGGACC+TGG | 0.650312 | 1_1:+54404334 | Msa0029170:CDS |
AGTTCAAAACAAGTTCAGCA+GGG | 0.652707 | 1_1:-54406890 | None:intergenic |
GAAGCTTTCAACAATGCACT+CGG | 0.655548 | 1_1:-54407128 | None:intergenic |
ATGGGGATGGAACGTACGCG+TGG | 0.660026 | 1_1:+54405452 | Msa0029170:CDS |
CATCATTCGGATAATCACTG+TGG | 0.677313 | 1_1:-54406110 | None:intergenic |
AAGCAGAATCTACAGCACTC+CGG | 0.679557 | 1_1:-54405549 | None:intergenic |
GTTGAGCTGAATAACGATGT+GGG | 0.684140 | 1_1:+54404575 | Msa0029170:CDS |
GGATGAGCAGAAGAAGAAGG+AGG | 0.687283 | 1_1:+54404751 | Msa0029170:CDS |
AGGTGAGAAGCCATCCATGG+TGG | 0.691278 | 1_1:+54405347 | Msa0029170:CDS |
TGTTGAGCTGAATAACGATG+TGG | 0.694789 | 1_1:+54404574 | Msa0029170:CDS |
GCTGAGCTGAATCATGATGT+GGG | 0.707525 | 1_1:+54404407 | Msa0029170:CDS |
CTGTTCATGTTTATACACGT+AGG | 0.716902 | 1_1:+54406787 | Msa0029170:CDS |
AAATTGATAGAGGAAGCAAG+CGG | 0.720495 | 1_1:+54406997 | Msa0029170:CDS |
ATGCAATTCCTGGTCCTGTG+TGG | 0.729902 | 1_1:-54407162 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATCAGTATCATTAATTA+AGG | - | chr1_1:54405911-54405930 | None:intergenic | 15.0% |
!!! | AATTTTAAATGATTGTTTTG+TGG | - | chr1_1:54406265-54406284 | None:intergenic | 15.0% |
!!! | ACAAAACAATCATTTAAAAT+TGG | + | chr1_1:54406264-54406283 | Msa0029170:CDS | 15.0% |
!!! | AATAACATTTTTAAGCATTT+TGG | + | chr1_1:54406951-54406970 | Msa0029170:CDS | 15.0% |
!! | TATTGAAAAGCAGAAAAATT+TGG | + | chr1_1:54405519-54405538 | Msa0029170:CDS | 20.0% |
!! | ACAATTCATACAAGTAAAAA+TGG | + | chr1_1:54405955-54405974 | Msa0029170:CDS | 20.0% |
!! | TATAGTTTCTTGAATGTTAT+AGG | + | chr1_1:54406528-54406547 | Msa0029170:CDS | 20.0% |
!! | ATAGTTTCTTGAATGTTATA+GGG | + | chr1_1:54406529-54406548 | Msa0029170:CDS | 20.0% |
!!! | TTTTAGAAAGAACTGCTATT+TGG | + | chr1_1:54405420-54405439 | Msa0029170:CDS | 25.0% |
! | ATCTTGTCATAAGTATCTTT+AGG | - | chr1_1:54405625-54405644 | None:intergenic | 25.0% |
! | TTATGACAAGATTAATCTTC+AGG | + | chr1_1:54405633-54405652 | Msa0029170:CDS | 25.0% |
!!! | TTATTTAAGCTTGTTTCTGA+GGG | - | chr1_1:54406936-54406955 | None:intergenic | 25.0% |
! | AATAACGATGTGGGTTTTTA+TGG | + | chr1_1:54404584-54404603 | Msa0029170:CDS | 30.0% |
! | ATAACGATGTGGGTTTTTAT+GGG | + | chr1_1:54404585-54404604 | Msa0029170:CDS | 30.0% |
AAAGATGTGAATGTTGCTAT+TGG | + | chr1_1:54404623-54404642 | Msa0029170:CDS | 30.0% | |
! | TTTGAAGATTCTCAAGTTGT+TGG | + | chr1_1:54404659-54404678 | Msa0029170:CDS | 30.0% |
! | TTGAAGATTCTCAAGTTGTT+GGG | + | chr1_1:54404660-54404679 | Msa0029170:CDS | 30.0% |
TAATAAGTGACGATGTTACT+CGG | + | chr1_1:54404804-54404823 | Msa0029170:CDS | 30.0% | |
! | TGATGAGTGATGATGTTATT+CGG | + | chr1_1:54404963-54404982 | Msa0029170:CDS | 30.0% |
! | TGCTATTTGGTAGCATATTA+TGG | + | chr1_1:54405433-54405452 | Msa0029170:CDS | 30.0% |
! | GCTATTTGGTAGCATATTAT+GGG | + | chr1_1:54405434-54405453 | Msa0029170:CDS | 30.0% |
! | CTATTTGGTAGCATATTATG+GGG | + | chr1_1:54405435-54405454 | Msa0029170:CDS | 30.0% |
ATAAGAGAAATGTGACCTAA+AGG | - | chr1_1:54405500-54405519 | None:intergenic | 30.0% | |
!! | AGAAAAATTTGGAAGTGTTC+CGG | + | chr1_1:54405530-54405549 | Msa0029170:CDS | 30.0% |
ATAAGTATCTTTAGGTATGC+AGG | - | chr1_1:54405617-54405636 | None:intergenic | 30.0% | |
ACCTCCACAATATTGTAATT+CGG | - | chr1_1:54405869-54405888 | None:intergenic | 30.0% | |
ATTACAATATTGTGGAGGTT+TGG | + | chr1_1:54405870-54405889 | Msa0029170:CDS | 30.0% | |
AGTAAAAATGGTGATCAAAC+TGG | + | chr1_1:54405967-54405986 | Msa0029170:CDS | 30.0% | |
CAAGCGTAAACATAATCTAA+AGG | + | chr1_1:54406026-54406045 | Msa0029170:CDS | 30.0% | |
CGTAAACATAATCTAAAGGT+TGG | + | chr1_1:54406030-54406049 | Msa0029170:CDS | 30.0% | |
CCAGAATATTTCAACATAGA+GGG | - | chr1_1:54406330-54406349 | None:intergenic | 30.0% | |
TCCAGAATATTTCAACATAG+AGG | - | chr1_1:54406331-54406350 | None:intergenic | 30.0% | |
!! | ATTTGCTATCTTTACTTCAG+TGG | + | chr1_1:54406481-54406500 | Msa0029170:CDS | 30.0% |
! | TTTGCTATCTTTACTTCAGT+GGG | + | chr1_1:54406482-54406501 | Msa0029170:CDS | 30.0% |
AAGAAACTATAATCTCCCTT+TGG | - | chr1_1:54406519-54406538 | None:intergenic | 30.0% | |
TTTCAGGAATTCAATCATTG+TGG | + | chr1_1:54406566-54406585 | Msa0029170:CDS | 30.0% | |
GAAATCTTACCTACAAAAGT+TGG | + | chr1_1:54406606-54406625 | Msa0029170:CDS | 30.0% | |
! | AACATTTGACTTTGATGATC+TGG | + | chr1_1:54406668-54406687 | Msa0029170:CDS | 30.0% |
! | TAAACATGAACAGGTTTTTC+TGG | - | chr1_1:54406780-54406799 | None:intergenic | 30.0% |
!! | GTTATTTAAGCTTGTTTCTG+AGG | - | chr1_1:54406937-54406956 | None:intergenic | 30.0% |
! | TAAGCATTTTGGACCTTTAA+AGG | + | chr1_1:54406962-54406981 | Msa0029170:CDS | 30.0% |
GCTAAACAGTTCAACATATT+TGG | + | chr1_1:54407071-54407090 | Msa0029170:CDS | 30.0% | |
TTCCAATGTTGAACTTAATG+TGG | + | chr1_1:54407193-54407212 | Msa0029170:CDS | 30.0% | |
! | GATTCTGATTTGTGCATACA+AGG | + | chr1_1:54404371-54404390 | Msa0029170:CDS | 35.0% |
!! | AATCATGATGTGGGTTTTGA+TGG | + | chr1_1:54404416-54404435 | Msa0029170:CDS | 35.0% |
!! | ATCATGATGTGGGTTTTGAT+GGG | + | chr1_1:54404417-54404436 | Msa0029170:CDS | 35.0% |
!! | TTTTGAAGGTAAGAGTGAGA+AGG | + | chr1_1:54404490-54404509 | Msa0029170:CDS | 35.0% |
GAAGCAACTTTGCATAAAGA+TGG | + | chr1_1:54404539-54404558 | Msa0029170:CDS | 35.0% | |
TTGCATAAAGATGGTGTTTG+TGG | + | chr1_1:54404548-54404567 | Msa0029170:CDS | 35.0% | |
TGAAGCAACTTCGAAAACAT+TGG | + | chr1_1:54404730-54404749 | Msa0029170:CDS | 35.0% | |
AATAAGTGACGATGTTACTC+GGG | + | chr1_1:54404805-54404824 | Msa0029170:CDS | 35.0% | |
TGATGATTCAGACAAAGAGA+AGG | + | chr1_1:54404868-54404887 | Msa0029170:CDS | 35.0% | |
TCAGACAAAGAGAAGGAAAT+CGG | + | chr1_1:54404875-54404894 | Msa0029170:CDS | 35.0% | |
! | GGAGACAAAGAAGTTTTTGA+TGG | + | chr1_1:54404896-54404915 | Msa0029170:CDS | 35.0% |
! | GATGAGTGATGATGTTATTC+GGG | + | chr1_1:54404964-54404983 | Msa0029170:CDS | 35.0% |
! | TGAGAAGATTGATGATTCAC+AGG | + | chr1_1:54405018-54405037 | Msa0029170:CDS | 35.0% |
! | TGATGCTTTTACCTGTTCAT+CGG | - | chr1_1:54405080-54405099 | None:intergenic | 35.0% |
! | GATGACTGATGATGTTATTC+AGG | + | chr1_1:54405123-54405142 | Msa0029170:CDS | 35.0% |
! | GATTGATTCAGACAAAGAGA+AGG | + | chr1_1:54405183-54405202 | Msa0029170:CDS | 35.0% |
TCAGACAAAGAGAAGGAAAT+TGG | + | chr1_1:54404875-54404894 | Msa0029170:CDS | 35.0% | |
ATTTAATGATGCCGAAGAAC+AGG | + | chr1_1:54405222-54405241 | Msa0029170:CDS | 35.0% | |
! | TGATGCTTTTACCTGTTCTT+CGG | - | chr1_1:54405236-54405255 | None:intergenic | 35.0% |
! | GAAGTTTTCTGTGAATGATC+TGG | + | chr1_1:54405315-54405334 | Msa0029170:CDS | 35.0% |
TTTCTGTGAATGATCTGGTT+TGG | + | chr1_1:54405320-54405339 | Msa0029170:CDS | 35.0% | |
! | TTCTGTGAATGATCTGGTTT+GGG | + | chr1_1:54405321-54405340 | Msa0029170:CDS | 35.0% |
AGGACAGATATTTGATCCTT+CGG | + | chr1_1:54405372-54405391 | Msa0029170:CDS | 35.0% | |
CTTTGGATGAAGTCAAAAGA+CGG | + | chr1_1:54405569-54405588 | Msa0029170:CDS | 35.0% | |
TTTGGATGAAGTCAAAAGAC+GGG | + | chr1_1:54405570-54405589 | Msa0029170:CDS | 35.0% | |
!! | TTCAGGTTGTTGAAAACTGT+GGG | + | chr1_1:54405650-54405669 | Msa0029170:CDS | 35.0% |
TCAACTCTATGTACCAAACT+TGG | - | chr1_1:54405688-54405707 | None:intergenic | 35.0% | |
AAGTATTCCATAAGCTTCTC+AGG | - | chr1_1:54405739-54405758 | None:intergenic | 35.0% | |
! | GCTTTATCCAATTTTCCAAC+TGG | + | chr1_1:54405763-54405782 | Msa0029170:CDS | 35.0% |
! | TTATCCAATTTTCCAACTGG+AGG | + | chr1_1:54405766-54405785 | Msa0029170:CDS | 35.0% |
TTGCCCGAATTACAATATTG+TGG | + | chr1_1:54405862-54405881 | Msa0029170:CDS | 35.0% | |
CCTCCACAATATTGTAATTC+GGG | - | chr1_1:54405868-54405887 | None:intergenic | 35.0% | |
ATCATTCGGATAATCACTGT+GGG | - | chr1_1:54406112-54406131 | None:intergenic | 35.0% | |
! | TGATTATCCGAATGATGATG+AGG | + | chr1_1:54406116-54406135 | Msa0029170:CDS | 35.0% |
AGGGGAAAAAAGATTAGCAA+TGG | - | chr1_1:54406142-54406161 | None:intergenic | 35.0% | |
TTCGTTTCTTGGAAAGGATA+GGG | - | chr1_1:54406161-54406180 | None:intergenic | 35.0% | |
TTTCGTTTCTTGGAAAGGAT+AGG | - | chr1_1:54406162-54406181 | None:intergenic | 35.0% | |
TAGTCTTTCGTTTCTTGGAA+AGG | - | chr1_1:54406167-54406186 | None:intergenic | 35.0% | |
AGCAATAGTCTTTCGTTTCT+TGG | - | chr1_1:54406172-54406191 | None:intergenic | 35.0% | |
! | AAATTGGTGATTGTATCCGT+AGG | + | chr1_1:54406280-54406299 | Msa0029170:CDS | 35.0% |
! | AATTGGTGATTGTATCCGTA+GGG | + | chr1_1:54406281-54406300 | Msa0029170:CDS | 35.0% |
CCCTCTATGTTGAAATATTC+TGG | + | chr1_1:54406327-54406346 | Msa0029170:CDS | 35.0% | |
TCTGAGTCTCCTCAAAATTA+GGG | - | chr1_1:54406419-54406438 | None:intergenic | 35.0% | |
TTCTGAGTCTCCTCAAAATT+AGG | - | chr1_1:54406420-54406439 | None:intergenic | 35.0% | |
TCTAGAGATGAAAACTCTGT+AGG | - | chr1_1:54406459-54406478 | None:intergenic | 35.0% | |
! | CTTTTAGTGCCAACTTTTGT+AGG | - | chr1_1:54406618-54406637 | None:intergenic | 35.0% |
CTACAAAAGTTGGCACTAAA+AGG | + | chr1_1:54406616-54406635 | Msa0029170:CDS | 35.0% | |
TGTTTCAGAAGATTCACCTA+TGG | - | chr1_1:54406652-54406671 | None:intergenic | 35.0% | |
CTACGTGTATAAACATGAAC+AGG | - | chr1_1:54406789-54406808 | None:intergenic | 35.0% | |
CTGTTCATGTTTATACACGT+AGG | + | chr1_1:54406787-54406806 | Msa0029170:CDS | 35.0% | |
! | TGTTCCAGGAAACAGTATTT+TGG | + | chr1_1:54406813-54406832 | Msa0029170:CDS | 35.0% |
! | ATATAACCAGCAGGTTTTTC+AGG | - | chr1_1:54406858-54406877 | None:intergenic | 35.0% |
TTCTCATCTATATAACCAGC+AGG | - | chr1_1:54406867-54406886 | None:intergenic | 35.0% | |
AGTTCAAAACAAGTTCAGCA+GGG | - | chr1_1:54406893-54406912 | None:intergenic | 35.0% | |
AAGTTCAAAACAAGTTCAGC+AGG | - | chr1_1:54406894-54406913 | None:intergenic | 35.0% | |
!! | TGTTTTGAACTTTGCTGACT+TGG | + | chr1_1:54406902-54406921 | Msa0029170:CDS | 35.0% |
TCTGTCTCAGATTCCTTTAA+AGG | - | chr1_1:54406978-54406997 | None:intergenic | 35.0% | |
! | TCTGAGACAGAAATTGATAG+AGG | + | chr1_1:54406987-54407006 | Msa0029170:CDS | 35.0% |
AAATTGATAGAGGAAGCAAG+CGG | + | chr1_1:54406997-54407016 | Msa0029170:CDS | 35.0% | |
AATGATCAAGATGCAATTCC+TGG | - | chr1_1:54407175-54407194 | None:intergenic | 35.0% | |
GACCACATTAAGTTCAACAT+TGG | - | chr1_1:54407198-54407217 | None:intergenic | 35.0% | |
GTTCAAGGGGATAAAGATGT+GGG | + | chr1_1:54404443-54404462 | Msa0029170:CDS | 40.0% | |
GTCTTACTATTCGAGCTGAA+GGG | + | chr1_1:54404465-54404484 | Msa0029170:CDS | 40.0% | |
TGTTGAGCTGAATAACGATG+TGG | + | chr1_1:54404574-54404593 | Msa0029170:CDS | 40.0% | |
GTTGAGCTGAATAACGATGT+GGG | + | chr1_1:54404575-54404594 | Msa0029170:CDS | 40.0% | |
! | TTTTTATGGGTCAGTTGAGG+AGG | + | chr1_1:54404598-54404617 | Msa0029170:CDS | 40.0% |
! | TTTTATGGGTCAGTTGAGGA+GGG | + | chr1_1:54404599-54404618 | Msa0029170:CDS | 40.0% |
! | GATGTGAATGTTGCTATTGG+AGG | + | chr1_1:54404626-54404645 | Msa0029170:CDS | 40.0% |
! | TTGCTATTGGAGGAACTGTA+GGG | + | chr1_1:54404636-54404655 | Msa0029170:CDS | 40.0% |
CAAGTTGTTGGGTCATTAGA+AGG | + | chr1_1:54404671-54404690 | Msa0029170:CDS | 40.0% | |
GAGAATGAGGTAGTTGAGTT+GGG | + | chr1_1:54404701-54404720 | Msa0029170:CDS | 40.0% | |
ATTGGATGAGCAGAAGAAGA+AGG | + | chr1_1:54404748-54404767 | Msa0029170:CDS | 40.0% | |
!! | GGAGGAGGTTGATGAAATAT+TGG | + | chr1_1:54404772-54404791 | Msa0029170:CDS | 40.0% |
!!! | AGTTTTTGATGGCGAAGAAC+AGG | + | chr1_1:54404907-54404926 | Msa0029170:CDS | 40.0% |
TGATGATTCACAGGAAGAGA+AGG | + | chr1_1:54405027-54405046 | Msa0029170:CDS | 40.0% | |
TCACAGGAAGAGAAGGAAAT+TGG | + | chr1_1:54405034-54405053 | Msa0029170:CDS | 40.0% | |
!! | ATTCAGGTTGAGTCAGATGA+AGG | + | chr1_1:54405139-54405158 | Msa0029170:CDS | 40.0% |
!! | TTCAGGTTGAGTCAGATGAA+GGG | + | chr1_1:54405140-54405159 | Msa0029170:CDS | 40.0% |
!! | GAACAGGTAAAAGCATCAGA+TGG | + | chr1_1:54405238-54405257 | Msa0029170:CDS | 40.0% |
! | ACTTTTCCCTGAACTCTTCA+CGG | - | chr1_1:54405284-54405303 | None:intergenic | 40.0% |
! | TCTGTGAATGATCTGGTTTG+GGG | + | chr1_1:54405322-54405341 | Msa0029170:CDS | 40.0% |
GAAGGATCAAATATCTGTCC+TGG | - | chr1_1:54405373-54405392 | None:intergenic | 40.0% | |
! | TTGGTAGCATATTATGGGGA+TGG | + | chr1_1:54405439-54405458 | Msa0029170:CDS | 40.0% |
TCAAAAGACGGGTCGAATTT+GGG | + | chr1_1:54405581-54405600 | Msa0029170:CDS | 40.0% | |
!! | CTTCAGGTTGTTGAAAACTG+TGG | + | chr1_1:54405649-54405668 | Msa0029170:CDS | 40.0% |
CATAAGCTTCTCAGGTGAAA+AGG | - | chr1_1:54405731-54405750 | None:intergenic | 40.0% | |
! | CTTTTCACCTGAGAAGCTTA+TGG | + | chr1_1:54405729-54405748 | Msa0029170:CDS | 40.0% |
AAAGCCTCCAGTTGGAAAAT+TGG | - | chr1_1:54405773-54405792 | None:intergenic | 40.0% | |
! | CTTGCATTCTACCGGTTAAA+GGG | + | chr1_1:54405829-54405848 | Msa0029170:CDS | 40.0% |
AGCAAGAGTAACCCTTTAAC+CGG | - | chr1_1:54405843-54405862 | None:intergenic | 40.0% | |
CCCGAATTACAATATTGTGG+AGG | + | chr1_1:54405865-54405884 | Msa0029170:CDS | 40.0% | |
AATGGTGATCAAACTGGAAC+CGG | + | chr1_1:54405973-54405992 | Msa0029170:CDS | 40.0% | |
! | GTTTGTGGCTTTTGAATCTC+CGG | - | chr1_1:54405995-54406014 | None:intergenic | 40.0% |
ATTATGTTTACGCTTGCGAC+GGG | - | chr1_1:54406022-54406041 | None:intergenic | 40.0% | |
GATTATGTTTACGCTTGCGA+CGG | - | chr1_1:54406023-54406042 | None:intergenic | 40.0% | |
TAATCACTGTGGGTAGAATC+TGG | - | chr1_1:54406102-54406121 | None:intergenic | 40.0% | |
CATCATTCGGATAATCACTG+TGG | - | chr1_1:54406113-54406132 | None:intergenic | 40.0% | |
TCGTTTCTTGGAAAGGATAG+GGG | - | chr1_1:54406160-54406179 | None:intergenic | 40.0% | |
! | GGTGCTTGAACTTTTCTCAA+GGG | - | chr1_1:54406244-54406263 | None:intergenic | 40.0% |
! | TGGTGCTTGAACTTTTCTCA+AGG | - | chr1_1:54406245-54406264 | None:intergenic | 40.0% |
AAAATTAGGGGAGAAGGGAT+CGG | - | chr1_1:54406406-54406425 | None:intergenic | 40.0% | |
TCCTCAAAATTAGGGGAGAA+GGG | - | chr1_1:54406411-54406430 | None:intergenic | 40.0% | |
CTGAGTCTCCTCAAAATTAG+GGG | - | chr1_1:54406418-54406437 | None:intergenic | 40.0% | |
GGAGTTTCTTCTCTGATTTC+AGG | + | chr1_1:54406550-54406569 | Msa0029170:CDS | 40.0% | |
GTAGGTAAGATTTCTTTCCC+AGG | - | chr1_1:54406600-54406619 | None:intergenic | 40.0% | |
AAAAGGAAGAAACCAGCCAT+AGG | + | chr1_1:54406633-54406652 | Msa0029170:CDS | 40.0% | |
!! | TCCAGGAAACAGTATTTTGG+TGG | + | chr1_1:54406816-54406835 | Msa0029170:CDS | 40.0% |
GTTCAAAACAAGTTCAGCAG+GGG | - | chr1_1:54406892-54406911 | None:intergenic | 40.0% | |
AATTGATAGAGGAAGCAAGC+GGG | + | chr1_1:54406998-54407017 | Msa0029170:CDS | 40.0% | |
GAAGCTTTCAACAATGCACT+CGG | - | chr1_1:54407131-54407150 | None:intergenic | 40.0% | |
! | TTCATCTTTTGCTACCACAC+AGG | + | chr1_1:54407148-54407167 | Msa0029170:CDS | 40.0% |
ATAGATCCCTCCACCTCTAT+AGG | - | chr1_1:54404308-54404327 | None:intergenic | 45.0% | |
TATAGAGGTGGAGGGATCTA+TGG | + | chr1_1:54404307-54404326 | Msa0029170:CDS | 45.0% | |
GGTTAGGGATGATACTGAGA+AGG | + | chr1_1:54404328-54404347 | Msa0029170:CDS | 45.0% | |
AATCCAAAACCCCAACTACC+AGG | - | chr1_1:54404355-54404374 | None:intergenic | 45.0% | |
TGCTGAGCTGAATCATGATG+TGG | + | chr1_1:54404406-54404425 | Msa0029170:CDS | 45.0% | |
GCTGAGCTGAATCATGATGT+GGG | + | chr1_1:54404407-54404426 | Msa0029170:CDS | 45.0% | |
!! | TGATGTGGGTTTTGATGGGT+CGG | + | chr1_1:54404421-54404440 | Msa0029170:CDS | 45.0% |
!! | GTTTTGATGGGTCGGTTCAA+GGG | + | chr1_1:54404429-54404448 | Msa0029170:CDS | 45.0% |
!! | TTTTGATGGGTCGGTTCAAG+GGG | + | chr1_1:54404430-54404449 | Msa0029170:CDS | 45.0% |
GGTTCAAGGGGATAAAGATG+TGG | + | chr1_1:54404442-54404461 | Msa0029170:CDS | 45.0% | |
GGTCTTACTATTCGAGCTGA+AGG | + | chr1_1:54404464-54404483 | Msa0029170:CDS | 45.0% | |
TGAAGGTAAGAGTGAGAAGG+AGG | + | chr1_1:54404493-54404512 | Msa0029170:CDS | 45.0% | |
TGAGAAGGAGGTAGTTGAGT+TGG | + | chr1_1:54404505-54404524 | Msa0029170:CDS | 45.0% | |
GAGAAGGAGGTAGTTGAGTT+GGG | + | chr1_1:54404506-54404525 | Msa0029170:CDS | 45.0% | |
! | GGGTTTTTATGGGTCAGTTG+AGG | + | chr1_1:54404595-54404614 | Msa0029170:CDS | 45.0% |
! | GTTGCTATTGGAGGAACTGT+AGG | + | chr1_1:54404635-54404654 | Msa0029170:CDS | 45.0% |
AGAAGGTAAGAGCGAGAATG+AGG | + | chr1_1:54404688-54404707 | Msa0029170:CDS | 45.0% | |
CGAGAATGAGGTAGTTGAGT+TGG | + | chr1_1:54404700-54404719 | Msa0029170:CDS | 45.0% | |
!! | AATGAGGTAGTTGAGTTGGG+TGG | + | chr1_1:54404704-54404723 | Msa0029170:CDS | 45.0% |
!! | ATGAGGTAGTTGAGTTGGGT+GGG | + | chr1_1:54404705-54404724 | Msa0029170:CDS | 45.0% |
!! | GGAGGGAAAGTTGGTATTTC+TGG | + | chr1_1:54404839-54404858 | Msa0029170:CDS | 45.0% |
!! | GAACAGGCAAAAGCATCAGA+TGG | + | chr1_1:54404923-54404942 | Msa0029170:CDS | 45.0% |
!! | ATTCGGGTTGAGTCAGATGA+AGG | + | chr1_1:54404980-54404999 | Msa0029170:CDS | 45.0% |
!! | TTCGGGTTGAGTCAGATGAA+GGG | + | chr1_1:54404981-54405000 | Msa0029170:CDS | 45.0% |
GAGTCAGATGAAGGGAAAGT+TGG | + | chr1_1:54404989-54405008 | Msa0029170:CDS | 45.0% | |
AGTTAATGACGCCGATGAAC+AGG | + | chr1_1:54405066-54405085 | Msa0029170:CDS | 45.0% | |
!! | GAACAGGTAAAAGCATCAGC+TGG | + | chr1_1:54405082-54405101 | Msa0029170:CDS | 45.0% |
GAGTCAGATGAAGGGAAAGT+TGG | + | chr1_1:54404989-54405008 | Msa0029170:CDS | 45.0% | |
! | TTTTCCCTGAACTCTTCACG+GGG | - | chr1_1:54405282-54405301 | None:intergenic | 45.0% |
! | CTTTTCCCTGAACTCTTCAC+GGG | - | chr1_1:54405283-54405302 | None:intergenic | 45.0% |
TCAGGGAAAAGTCGTAGAGA+AGG | + | chr1_1:54405292-54405311 | Msa0029170:CDS | 45.0% | |
CAGGGAAAAGTCGTAGAGAA+GGG | + | chr1_1:54405293-54405312 | Msa0029170:CDS | 45.0% | |
GGTCTAAGCTGAAGTCCTTT+AGG | + | chr1_1:54405482-54405501 | Msa0029170:CDS | 45.0% | |
AAGCAGAATCTACAGCACTC+CGG | - | chr1_1:54405552-54405571 | None:intergenic | 45.0% | |
! | GAGTGCTGTAGATTCTGCTT+TGG | + | chr1_1:54405552-54405571 | Msa0029170:CDS | 45.0% |
GTCAAAAGACGGGTCGAATT+TGG | + | chr1_1:54405580-54405599 | Msa0029170:CDS | 45.0% | |
GATTCGACAAGAGCCAAGTT+TGG | + | chr1_1:54405672-54405691 | Msa0029170:CDS | 45.0% | |
AAGCTTCTCAGGTGAAAAGG+AGG | - | chr1_1:54405728-54405747 | None:intergenic | 45.0% | |
AATCGATCAAAGCCTCCAGT+TGG | - | chr1_1:54405781-54405800 | None:intergenic | 45.0% | |
! | AACTGGAGGCTTTGATCGAT+TGG | + | chr1_1:54405780-54405799 | Msa0029170:CDS | 45.0% |
ATTGGAGCTTACAACAGCGA+AGG | + | chr1_1:54405798-54405817 | Msa0029170:CDS | 45.0% | |
! | GCTTGCATTCTACCGGTTAA+AGG | + | chr1_1:54405828-54405847 | Msa0029170:CDS | 45.0% |
!! | AGCTTGTTAGAACCAGCCAA+TGG | + | chr1_1:54406072-54406091 | Msa0029170:CDS | 45.0% |
! | GCTTGTTAGAACCAGCCAAT+GGG | + | chr1_1:54406073-54406092 | Msa0029170:CDS | 45.0% |
GGTAGAATCTGGATTCCCAT+TGG | - | chr1_1:54406091-54406110 | None:intergenic | 45.0% | |
GCAATGGCCTCATCATCATT+CGG | - | chr1_1:54406126-54406145 | None:intergenic | 45.0% | |
TTCTTCTGCCTTTCACCCTT+GGG | - | chr1_1:54406212-54406231 | None:intergenic | 45.0% | |
TTTCTTCTGCCTTTCACCCT+TGG | - | chr1_1:54406213-54406232 | None:intergenic | 45.0% | |
! | TAAGTTGGCTAGCAACCCTA+CGG | - | chr1_1:54406299-54406318 | None:intergenic | 45.0% |
! | TTCTGGAGACACTTCTCTGA+TGG | + | chr1_1:54406344-54406363 | Msa0029170:CDS | 45.0% |
TCTCTGATGGCAGATGGTAA+TGG | + | chr1_1:54406357-54406376 | Msa0029170:CDS | 45.0% | |
! | TCCCTTCTCCCCTAATTTTG+AGG | + | chr1_1:54406407-54406426 | Msa0029170:CDS | 45.0% |
CTCCTCAAAATTAGGGGAGA+AGG | - | chr1_1:54406412-54406431 | None:intergenic | 45.0% | |
TTTACTTCAGTGGGTAGCAC+AGG | + | chr1_1:54406491-54406510 | Msa0029170:CDS | 45.0% | |
GATTTCTTTCCCAGGATCAC+TGG | - | chr1_1:54406592-54406611 | None:intergenic | 45.0% | |
TCAGAAGATTCACCTATGGC+TGG | - | chr1_1:54406648-54406667 | None:intergenic | 45.0% | |
! | GACACTTGTTGCATGCAGAA+TGG | + | chr1_1:54406693-54406712 | Msa0029170:CDS | 45.0% |
!!! | AGGTTTTTCTGGCTCAGAAG+GGG | - | chr1_1:54406769-54406788 | None:intergenic | 45.0% |
!!! | CAGGTTTTTCTGGCTCAGAA+GGG | - | chr1_1:54406770-54406789 | None:intergenic | 45.0% |
!!! | ACAGGTTTTTCTGGCTCAGA+AGG | - | chr1_1:54406771-54406790 | None:intergenic | 45.0% |
GCCACCAAAATACTGTTTCC+TGG | - | chr1_1:54406820-54406839 | None:intergenic | 45.0% | |
AGGAGGAGGAGGATTGTCTA+GGG | - | chr1_1:54404279-54404298 | None:intergenic | 50.0% | |
AGGTGGAGGGATCTATGGTT+AGG | + | chr1_1:54404312-54404331 | Msa0029170:CDS | 50.0% | |
GGTGGAGGGATCTATGGTTA+GGG | + | chr1_1:54404313-54404332 | Msa0029170:CDS | 50.0% | |
GGATGATACTGAGAAGGACC+TGG | + | chr1_1:54404334-54404353 | Msa0029170:CDS | 50.0% | |
ACTGAGAAGGACCTGGTAGT+TGG | + | chr1_1:54404341-54404360 | Msa0029170:CDS | 50.0% | |
CTGAGAAGGACCTGGTAGTT+GGG | + | chr1_1:54404342-54404361 | Msa0029170:CDS | 50.0% | |
TGAGAAGGACCTGGTAGTTG+GGG | + | chr1_1:54404343-54404362 | Msa0029170:CDS | 50.0% | |
!! | GGTTTTGATGGGTCGGTTCA+AGG | + | chr1_1:54404428-54404447 | Msa0029170:CDS | 50.0% |
! | CGAGCTGAAGGGTCTTTTGA+AGG | + | chr1_1:54404476-54404495 | Msa0029170:CDS | 50.0% |
!! | AAGGAGGTAGTTGAGTTGGG+TGG | + | chr1_1:54404509-54404528 | Msa0029170:CDS | 50.0% |
GGATGAGCAGAAGAAGAAGG+AGG | + | chr1_1:54404751-54404770 | Msa0029170:CDS | 50.0% | |
TGAGCAGAAGAAGAAGGAGG+AGG | + | chr1_1:54404754-54404773 | Msa0029170:CDS | 50.0% | |
!! | CGATGTTACTCGGGTTGAGT+CGG | + | chr1_1:54404814-54404833 | Msa0029170:CDS | 50.0% |
ATGTCCCCGTGAAGAGTTCA+GGG | + | chr1_1:54405275-54405294 | Msa0029170:CDS | 50.0% | |
!! | GAATGATCTGGTTTGGGGCA+AGG | + | chr1_1:54405327-54405346 | Msa0029170:CDS | 50.0% |
AATATCTGTCCTGGCCACCA+TGG | - | chr1_1:54405364-54405383 | None:intergenic | 50.0% | |
GAACGTACGCGTGGAATGAA+GGG | + | chr1_1:54405461-54405480 | Msa0029170:CDS | 50.0% | |
CTCAGCTGCTTGCATTCTAC+CGG | + | chr1_1:54405821-54405840 | Msa0029170:CDS | 50.0% | |
GAATCTGGATTCCCATTGGC+TGG | - | chr1_1:54406087-54406106 | None:intergenic | 50.0% | |
AGGGTTGCTAGCCAACTTAC+TGG | + | chr1_1:54406300-54406319 | Msa0029170:CDS | 50.0% | |
GGGTTGCTAGCCAACTTACT+GGG | + | chr1_1:54406301-54406320 | Msa0029170:CDS | 50.0% | |
GACACTTCTCTGATGGCAGA+TGG | + | chr1_1:54406351-54406370 | Msa0029170:CDS | 50.0% | |
TGGGTAGCACAGGAACCAAA+GGG | + | chr1_1:54406501-54406520 | Msa0029170:CDS | 50.0% | |
ATCATTGTGGCCAGTGATCC+TGG | + | chr1_1:54406579-54406598 | Msa0029170:CDS | 50.0% | |
TCATTGTGGCCAGTGATCCT+GGG | + | chr1_1:54406580-54406599 | Msa0029170:CDS | 50.0% | |
ATACACGTAGGTCGTGTTCC+AGG | + | chr1_1:54406799-54406818 | Msa0029170:CDS | 50.0% | |
!! | TTTTGGTGGCAATCACGCTG+AGG | + | chr1_1:54406830-54406849 | Msa0029170:CDS | 50.0% |
GAGGTTCCTGAAAAACCTGC+TGG | + | chr1_1:54406849-54406868 | Msa0029170:CDS | 50.0% | |
! | CACTCGGTGAGTAGTTAAGC+TGG | - | chr1_1:54407115-54407134 | None:intergenic | 50.0% |
! | TTTTGCTACCACACAGGACC+AGG | + | chr1_1:54407154-54407173 | Msa0029170:CDS | 50.0% |
ATGCAATTCCTGGTCCTGTG+TGG | - | chr1_1:54407165-54407184 | None:intergenic | 50.0% | |
GAGGAGGAGGAGGATTGTCT+AGG | - | chr1_1:54404280-54404299 | None:intergenic | 55.0% | |
TCTATAGGAGGAGGAGGAGG+AGG | - | chr1_1:54404293-54404312 | None:intergenic | 55.0% | |
TCCTCCTCCTCCTCCTATAG+AGG | + | chr1_1:54404292-54404311 | Msa0029170:CDS | 55.0% | |
ACCTCTATAGGAGGAGGAGG+AGG | - | chr1_1:54404296-54404315 | None:intergenic | 55.0% | |
TCCTCCTCCTCCTATAGAGG+TGG | + | chr1_1:54404295-54404314 | Msa0029170:CDS | 55.0% | |
TCCACCTCTATAGGAGGAGG+AGG | - | chr1_1:54404299-54404318 | None:intergenic | 55.0% | |
TCCTCCTCCTATAGAGGTGG+AGG | + | chr1_1:54404298-54404317 | Msa0029170:CDS | 55.0% | |
CCTCCTCCTATAGAGGTGGA+GGG | + | chr1_1:54404299-54404318 | Msa0029170:CDS | 55.0% | |
GATCCCTCCACCTCTATAGG+AGG | - | chr1_1:54404305-54404324 | None:intergenic | 55.0% | |
! | GGACCTGGTAGTTGGGGTTT+TGG | + | chr1_1:54404349-54404368 | Msa0029170:CDS | 55.0% |
!! | GAGGTAGTTGAGTTGGGTGG+TGG | + | chr1_1:54404512-54404531 | Msa0029170:CDS | 55.0% |
GCAGAAGAAGAAGGAGGAGG+AGG | + | chr1_1:54404757-54404776 | Msa0029170:CDS | 55.0% | |
!! | GTTACTCGGGTTGAGTCGGA+TGG | + | chr1_1:54404818-54404837 | Msa0029170:CDS | 55.0% |
GAGTCGGATGGAGGGAAAGT+TGG | + | chr1_1:54404830-54404849 | Msa0029170:CDS | 55.0% | |
CATGTCCCCGTGAAGAGTTC+AGG | + | chr1_1:54405274-54405293 | Msa0029170:CDS | 55.0% | |
GCAAGGTGAGAAGCCATCCA+TGG | + | chr1_1:54405344-54405363 | Msa0029170:CDS | 55.0% | |
AGGTGAGAAGCCATCCATGG+TGG | + | chr1_1:54405347-54405366 | Msa0029170:CDS | 55.0% | |
TCCTTCGGATGCATCTGTGC+AGG | + | chr1_1:54405387-54405406 | Msa0029170:CDS | 55.0% | |
GGAACGTACGCGTGGAATGA+AGG | + | chr1_1:54405460-54405479 | Msa0029170:CDS | 55.0% | |
AAGACGGGTCGAATTTGGGC+TGG | + | chr1_1:54405585-54405604 | Msa0029170:CDS | 55.0% | |
!! | CTTGCGACGGGATTGGTTTG+TGG | - | chr1_1:54406010-54406029 | None:intergenic | 55.0% |
GTTTACGCTTGCGACGGGAT+TGG | - | chr1_1:54406017-54406036 | None:intergenic | 55.0% | |
ATCAGTACGCTGACGTCCCA+AGG | + | chr1_1:54406193-54406212 | Msa0029170:CDS | 55.0% | |
TCAGTACGCTGACGTCCCAA+GGG | + | chr1_1:54406194-54406213 | Msa0029170:CDS | 55.0% | |
TAGAGGGCGACCCAGTAAGT+TGG | - | chr1_1:54406314-54406333 | None:intergenic | 55.0% | |
GTGGGTAGCACAGGAACCAA+AGG | + | chr1_1:54406500-54406519 | Msa0029170:CDS | 55.0% | |
ATAGGAGGAGGAGGAGGAGG+AGG | - | chr1_1:54404290-54404309 | None:intergenic | 60.0% | |
CCCTCCACCTCTATAGGAGG+AGG | - | chr1_1:54404302-54404321 | None:intergenic | 60.0% | |
!! | ACTCGGGTTGAGTCGGATGG+AGG | + | chr1_1:54404821-54404840 | Msa0029170:CDS | 60.0% |
!! | CTCGGGTTGAGTCGGATGGA+GGG | + | chr1_1:54404822-54404841 | Msa0029170:CDS | 60.0% |
AGAAGCCATCCATGGTGGCC+AGG | + | chr1_1:54405352-54405371 | Msa0029170:CDS | 60.0% | |
TCTGTCCTGGCCACCATGGA+TGG | - | chr1_1:54405360-54405379 | None:intergenic | 60.0% | |
GCCTGCACAGATGCATCCGA+AGG | - | chr1_1:54405391-54405410 | None:intergenic | 60.0% | |
ATGGGGATGGAACGTACGCG+TGG | + | chr1_1:54405452-54405471 | Msa0029170:CDS | 60.0% | |
GCTGACGTCCCAAGGGTGAA+AGG | + | chr1_1:54406201-54406220 | Msa0029170:CDS | 60.0% | |
AGGAAGCAAGCGGGCAAGAG+TGG | + | chr1_1:54407007-54407026 | Msa0029170:CDS | 60.0% | |
! | GCCGATGCGCAAGCTGCTTT+CGG | + | chr1_1:54407044-54407063 | Msa0029170:CDS | 60.0% |
GCCGAAAGCAGCTTGCGCAT+CGG | - | chr1_1:54407048-54407067 | None:intergenic | 60.0% | |
! | GAAGGGGCGCGCTCATAGTC+TGG | - | chr1_1:54406753-54406772 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 54404257 | 54407220 | 54404257 | ID=Msa0029170;Name=Msa0029170 |
chr1_1 | mRNA | 54404257 | 54407220 | 54404257 | ID=Msa0029170-mRNA-1;Parent=Msa0029170;Name=Msa0029170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|987 |
chr1_1 | exon | 54404257 | 54407220 | 54404257 | ID=Msa0029170-mRNA-1:exon:16157;Parent=Msa0029170-mRNA-1 |
chr1_1 | CDS | 54404257 | 54407220 | 54404257 | ID=Msa0029170-mRNA-1:cds;Parent=Msa0029170-mRNA-1 |
Gene Sequence |
Protein sequence |