AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030650 MtrunA17_Chr1g0195081 96.454 423 11 2 1 423 1 419 0.0 830
Msa0030650 MtrunA17_Chr7g0268671 70.297 101 8 2 1 101 1 79 1.04e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030650 AT1G29220.1 60.674 267 87 5 170 423 90 351 2.86e-100 303
Msa0030650 AT1G29220.2 58.065 279 87 6 170 423 90 363 1.69e-96 293

Find 141 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTAGTTAATGGATTT+TGG 0.112017 1_1:-57066214 None:intergenic
ATTTCAATGTCTCCGAAAAT+TGG 0.145672 1_1:-57067396 None:intergenic
GATTGGGGAAAATTAGTTAA+TGG 0.230090 1_1:-57066221 None:intergenic
AGGATCAGCATGCCTGTTAC+AGG 0.285876 1_1:+57069979 Msa0030650:CDS
AGATCCTGAGCCATTCATTT+TGG 0.291747 1_1:+57071276 Msa0030650:exon
CTCGCCGGTAACTTCATTTC+CGG 0.297204 1_1:-57066522 None:intergenic
TACCAGGATATTGATCAAAT+AGG 0.319035 1_1:+57069079 Msa0030650:CDS
TTGATGCCATTGAAGGGGTT+AGG 0.320295 1_1:-57066316 None:intergenic
TTGCAGGAGGGAGAGATAGA+TGG 0.331677 1_1:+57067033 Msa0030650:intron
TTTCAATGTCTCCGAAAATT+GGG 0.337673 1_1:-57067395 None:intergenic
AAACGCAGGAAAATTTGATT+TGG 0.341618 1_1:-57066172 None:intergenic
CAGAAGTAAAATCAACCTTT+TGG 0.345206 1_1:-57069921 None:intergenic
ACGCTTACGATAGTTGATTA+TGG 0.346865 1_1:+57066620 Msa0030650:CDS
ATTTCCTGCTTCAGCTGGTC+TGG 0.348800 1_1:+57071417 Msa0030650:three_prime_UTR
CGACAACAGCGACGACGATA+TGG 0.354188 1_1:+57066382 Msa0030650:CDS
AGTGTTGATGTTTAACGATT+GGG 0.359843 1_1:-57066237 None:intergenic
GGAGTGTTAGCTTGATTGTT+AGG 0.363684 1_1:-57067373 None:intergenic
TCCTCTGCCCTCTGTGGGGC+AGG 0.375291 1_1:+57070314 Msa0030650:CDS
TTCTTCTTTGATGCCATTGA+AGG 0.378186 1_1:-57066323 None:intergenic
CTGCTGTCACACAGGAATAA+AGG 0.380075 1_1:-57071441 None:intergenic
GGTAGTGGTAGAGTTATGTT+TGG 0.384601 1_1:+57067054 Msa0030650:CDS
TGTAACAGGCATGCTGATCC+TGG 0.390154 1_1:-57069977 None:intergenic
TGATGCCATTGAAGGGGTTA+GGG 0.393288 1_1:-57066315 None:intergenic
GGAGCACCAAGCACAATTCC+TGG 0.394854 1_1:-57069955 None:intergenic
GTAGTGGTAGAGTTATGTTT+GGG 0.398710 1_1:+57067055 Msa0030650:CDS
TCCTCTGAGCATTTAACTTC+GGG 0.399431 1_1:-57067532 None:intergenic
AACTACAGGTGGTTTGCATT+TGG 0.399484 1_1:+57070127 Msa0030650:CDS
AAGATCTAGTGAAAGGAGGT+TGG 0.401837 1_1:+57071248 Msa0030650:CDS
TCGCCGGTAACTTCATTTCC+GGG 0.402289 1_1:-57066521 None:intergenic
GTGATTTCTAAACCTGTAAC+AGG 0.404398 1_1:-57069991 None:intergenic
TCTCCAAGCTCTGCATCATC+AGG 0.407205 1_1:-57067451 None:intergenic
CGGCGTCATCTTGCTCCTCC+TGG 0.418490 1_1:-57066436 None:intergenic
AAGAAATTTCCTGCTTCAGC+TGG 0.420662 1_1:+57071412 Msa0030650:three_prime_UTR
TTCCCGCTGGTTGATTGGTT+GGG 0.421989 1_1:+57071505 Msa0030650:three_prime_UTR
CAGCGGGAACAACTATTTCA+TGG 0.424196 1_1:-57071491 None:intergenic
GTCGCTGTTGTCGTTGTACA+TGG 0.428690 1_1:-57066372 None:intergenic
CTCCTCTGAGCATTTAACTT+CGG 0.432251 1_1:-57067533 None:intergenic
TTTCTGGAAGAGATGAAATT+CGG 0.434072 1_1:-57066269 None:intergenic
CTTTATTCCTGTGTGACAGC+AGG 0.435632 1_1:+57071442 Msa0030650:three_prime_UTR
AGTAGCAATGTCACCTGAAC+CGG 0.443032 1_1:+57066652 Msa0030650:CDS
ACCAGGATATTGATCAAATA+GGG 0.451137 1_1:+57069080 Msa0030650:CDS
ACAGCATGCAGTAAGAAGTC+AGG 0.452748 1_1:-57069052 None:intergenic
ATATGAGGCGAGAAAGTGAT+AGG 0.455219 1_1:+57069869 Msa0030650:CDS
CAAAACCCTAACCCCTTCAA+TGG 0.456860 1_1:+57066310 Msa0030650:exon
GTTCCCGCTGGTTGATTGGT+TGG 0.461343 1_1:+57071504 Msa0030650:three_prime_UTR
CAGGATTCTGTATCTACAGC+AGG 0.461924 1_1:+57070333 Msa0030650:CDS
AAGTGTTGATGTTTAACGAT+TGG 0.465643 1_1:-57066238 None:intergenic
TCTTCTTTGATGCCATTGAA+GGG 0.466002 1_1:-57066322 None:intergenic
AAAATTCCTCTGCCCTCTGT+GGG 0.466045 1_1:+57070309 Msa0030650:CDS
GGTGGTTCTGCTGCAACTAC+AGG 0.474888 1_1:+57070113 Msa0030650:intron
AGACCTGATGATGCAGAGCT+TGG 0.477379 1_1:+57067448 Msa0030650:CDS
ACCGGCGAAAACAATCTATT+CGG 0.477813 1_1:-57066554 None:intergenic
AGTTGTTCCCGCTGGTTGAT+TGG 0.481772 1_1:+57071500 Msa0030650:three_prime_UTR
TTGCTAGATAGAACATCATC+AGG 0.482498 1_1:+57067331 Msa0030650:CDS
TTAATGCAGAAGTTCGCAAC+AGG 0.487042 1_1:+57069014 Msa0030650:CDS
ACCCGTTGTTGCTCTTGCAC+CGG 0.489660 1_1:-57066572 None:intergenic
GGAAGATTTGACTGCCGATA+CGG 0.495294 1_1:+57066478 Msa0030650:CDS
CATTTAACTTCGGGTGGAGG+AGG 0.495435 1_1:-57067523 None:intergenic
TACCATTGGTTACATGATGT+TGG 0.503613 1_1:-57067080 None:intergenic
ACAAAGCAGAAGCTGATATG+AGG 0.508051 1_1:+57069854 Msa0030650:intron
GAGCATTTAACTTCGGGTGG+AGG 0.509611 1_1:-57067526 None:intergenic
AGAATGACCGTTGCTGATCC+CGG 0.510855 1_1:+57066503 Msa0030650:CDS
CGTCGCTGAACAAGCGGCGG+AGG 0.511380 1_1:+57066457 Msa0030650:CDS
TAAATTTCTGGAGTATAAGA+AGG 0.512451 1_1:+57068979 Msa0030650:CDS
AAAGATGTATTTGATCCTCA+TGG 0.513183 1_1:+57069115 Msa0030650:CDS
AGAAGAAGACGTGAATCGCC+AGG 0.516902 1_1:+57066418 Msa0030650:CDS
TGTCAAACAGTGTTATAAGC+GGG 0.518586 1_1:+57071306 Msa0030650:three_prime_UTR
GTGTTGATGTTTAACGATTG+GGG 0.519587 1_1:-57066236 None:intergenic
AATCACATCGTCATTATTCA+CGG 0.520386 1_1:-57067425 None:intergenic
GTGTTATCTGCTACTAATGC+TGG 0.522239 1_1:+57070369 Msa0030650:CDS
GAATTGTGCTTGGTGCTCCC+AGG 0.522243 1_1:+57069959 Msa0030650:CDS
GCCGGTGCAAGAGCAACAAC+GGG 0.522968 1_1:+57066571 Msa0030650:CDS
CGCCGGTGCAAGAGCAACAA+CGG 0.525944 1_1:+57066570 Msa0030650:CDS
GGCATCAAAGAAGAAACAAT+CGG 0.534768 1_1:+57066331 Msa0030650:CDS
ACCCTATTTGATCAATATCC+TGG 0.535620 1_1:-57069081 None:intergenic
GCATAAATCTGAAGATCCAT+TGG 0.537067 1_1:+57067489 Msa0030650:CDS
GATCCCGGAAATGAAGTTAC+CGG 0.539683 1_1:+57066518 Msa0030650:CDS
GTCTTTGAGTTTGTTGTACG+AGG 0.539915 1_1:+57071596 Msa0030650:three_prime_UTR
CTTCTTTGATGCCATTGAAG+GGG 0.540176 1_1:-57066321 None:intergenic
AGAGAAGATCTAGTGAAAGG+AGG 0.544423 1_1:+57071244 Msa0030650:CDS
AGGACCAGACCAGCTGAAGC+AGG 0.545059 1_1:-57071421 None:intergenic
CTCCGCCGCTTGTTCAGCGA+CGG 0.547266 1_1:-57066456 None:intergenic
GGAGGAAGAAATTTATCCAA+TGG 0.548886 1_1:-57067505 None:intergenic
TTTCTGGAGTATAAGAAGGC+AGG 0.549624 1_1:+57068983 Msa0030650:CDS
GAAAATTCCTCTGCCCTCTG+TGG 0.551062 1_1:+57070308 Msa0030650:CDS
TCTGAGCATTTAACTTCGGG+TGG 0.551073 1_1:-57067529 None:intergenic
GAAGAAAGCACAGAACCAAA+AGG 0.553830 1_1:+57069906 Msa0030650:CDS
CATGAAATAGTTGTTCCCGC+TGG 0.555488 1_1:+57071492 Msa0030650:three_prime_UTR
ACTGCATGCTGTGAGGTACC+AGG 0.556776 1_1:+57069063 Msa0030650:CDS
GGAAATGAAGTTACCGGCGA+GGG 0.557957 1_1:+57066524 Msa0030650:CDS
TCCTGCCCCACAGAGGGCAG+AGG 0.560130 1_1:-57070315 None:intergenic
ACACAACAGACCAAAATGAA+TGG 0.560826 1_1:-57071286 None:intergenic
TTCATTTCCGGGATCAGCAA+CGG 0.561082 1_1:-57066510 None:intergenic
AACCCAACCAATCAACCAGC+GGG 0.566375 1_1:-57071507 None:intergenic
GCTGATTCTATTAATCGAGA+TGG 0.567276 1_1:+57070161 Msa0030650:CDS
CAGACCAAAATGAATGGCTC+AGG 0.567736 1_1:-57071280 None:intergenic
GTAACAGGCATGCTGATCCT+GGG 0.568611 1_1:-57069976 None:intergenic
GAGGGAGAGATAGATGGTAG+TGG 0.568695 1_1:+57067039 Msa0030650:CDS
AACGGTCATTCTATCCGTAT+CGG 0.573768 1_1:-57066492 None:intergenic
CGATTAATAGAATCAGCTGT+AGG 0.576341 1_1:-57070155 None:intergenic
GGTTCTGCTGCAACTACAGG+TGG 0.576883 1_1:+57070116 Msa0030650:CDS
CATAAATCCTGCTGTCACAC+AGG 0.580263 1_1:-57071449 None:intergenic
TCTGCTACTAATGCTGGCAG+TGG 0.582850 1_1:+57070375 Msa0030650:CDS
TTCAATGTCTCCGAAAATTG+GGG 0.583657 1_1:-57067394 None:intergenic
AGCGGGAACAACTATTTCAT+GGG 0.585351 1_1:-57071490 None:intergenic
GCAGTAAGAAGTCAGGGTTT+CGG 0.587267 1_1:-57069045 None:intergenic
AGGAGAGAAGATCTAGTGAA+AGG 0.588994 1_1:+57071241 Msa0030650:CDS
ACAGAATCCTGCCCCACAGA+GGG 0.590054 1_1:-57070321 None:intergenic
CAGCATGCAGTAAGAAGTCA+GGG 0.593688 1_1:-57069051 None:intergenic
ACACAACCAGGAATTGTGCT+TGG 0.599473 1_1:+57069949 Msa0030650:CDS
GGTGCAAGAGCAACAACGGG+TGG 0.600004 1_1:+57066574 Msa0030650:CDS
GTCAAACAGTGTTATAAGCG+GGG 0.604831 1_1:+57071307 Msa0030650:three_prime_UTR
GAAGAGATGAAATTCGGTGA+GGG 0.609024 1_1:-57066263 None:intergenic
TGACGCCGTCGCTGAACAAG+CGG 0.612156 1_1:+57066451 Msa0030650:CDS
GACCAACATCATGTAACCAA+TGG 0.613962 1_1:+57067078 Msa0030650:CDS
AGGATTCTGTATCTACAGCA+GGG 0.614180 1_1:+57070334 Msa0030650:CDS
CGCCGTCGCTGAACAAGCGG+CGG 0.615904 1_1:+57066454 Msa0030650:CDS
TCTTTGAGTTTGTTGTACGA+GGG 0.616155 1_1:+57071597 Msa0030650:three_prime_UTR
TTAATAGAATCAGCTGTAGG+AGG 0.622006 1_1:-57070152 None:intergenic
TCAAAGAAGAAACAATCGGA+AGG 0.625279 1_1:+57066335 Msa0030650:CDS
TGCAGAAGTTCGCAACAGGA+AGG 0.625826 1_1:+57069018 Msa0030650:CDS
AATGACAGGTGGATGGTGAT+CGG 0.628132 1_1:+57070286 Msa0030650:intron
AAACCCAACCAATCAACCAG+CGG 0.649693 1_1:-57071508 None:intergenic
ATTCGGAGTAAAACCCTCGC+CGG 0.650709 1_1:-57066537 None:intergenic
AGCAATGTCACCTGAACCGG+AGG 0.656869 1_1:+57066655 Msa0030650:CDS
TCAAACAGTGTTATAAGCGG+GGG 0.657123 1_1:+57071308 Msa0030650:three_prime_UTR
GTGTCAAACAGTGTTATAAG+CGG 0.661550 1_1:+57071305 Msa0030650:three_prime_UTR
CGGAAATGAAGTTACCGGCG+AGG 0.662317 1_1:+57066523 Msa0030650:CDS
ATAATCAACTATCGTAAGCG+TGG 0.663759 1_1:-57066618 None:intergenic
AAATTCCTCTGCCCTCTGTG+GGG 0.665822 1_1:+57070310 Msa0030650:CDS
TAGTGGTAGAGTTATGTTTG+GGG 0.667952 1_1:+57067056 Msa0030650:CDS
ACTTCTTACTGCATGCTGTG+AGG 0.672975 1_1:+57069056 Msa0030650:CDS
TCTAGTGAATGACAGGTGGA+TGG 0.676721 1_1:+57070279 Msa0030650:intron
ATGAAAATAGGAGAAAACGC+AGG 0.681830 1_1:-57066186 None:intergenic
GGAAGAGATGAAATTCGGTG+AGG 0.681935 1_1:-57066264 None:intergenic
GGATTCTGTATCTACAGCAG+GGG 0.695787 1_1:+57070335 Msa0030650:CDS
TACAGAATCCTGCCCCACAG+AGG 0.701178 1_1:-57070322 None:intergenic
ACCCGAAGTTAAATGCTCAG+AGG 0.706953 1_1:+57067531 Msa0030650:CDS
AGAAGACGTGAATCGCCAGG+AGG 0.711297 1_1:+57066421 Msa0030650:CDS
TCACTTGAATCATATCCATG+AGG 0.732824 1_1:-57069130 None:intergenic
CAAACTCAAAGACAATACAG+TGG 0.753185 1_1:-57071586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTTATCAAATTCAT+TGG - chr1_1:57067695-57067714 None:intergenic 15.0%
!! ATTTGATAAAAAAGAAACTT+TGG + chr1_1:57067699-57067718 Msa0030650:intron 15.0%
!! GAGAAAAATAAATAAATTTC+TGG + chr1_1:57068967-57068986 Msa0030650:intron 15.0%
!! ACAGAATAAAAAATCAAAAT+GGG + chr1_1:57070187-57070206 Msa0030650:CDS 15.0%
!! TTCTTTAATTAAATGATAAC+AGG - chr1_1:57070548-57070567 None:intergenic 15.0%
!!! TAAAAAGCATTATTTAACAT+AGG - chr1_1:57070731-57070750 None:intergenic 15.0%
!!! AAAGTGAAACTTTTTTTTAA+AGG - chr1_1:57070882-57070901 None:intergenic 15.0%
!!! TTTTTGCTTGTTTATTATTT+CGG + chr1_1:57071352-57071371 Msa0030650:three_prime_UTR 15.0%
!!! GAAAATTAGTTAATGGATTT+TGG - chr1_1:57066217-57066236 None:intergenic 20.0%
!!! GTTTTGAAATTTGTTGAATT+GGG - chr1_1:57066296-57066315 None:intergenic 20.0%
!! AAAAGTAAGTTAGTATGAAA+TGG + chr1_1:57066764-57066783 Msa0030650:intron 20.0%
!!! TTCAAGTTAGAATCAAATTT+TGG + chr1_1:57066861-57066880 Msa0030650:intron 20.0%
!!! AAAATTGATTTTGACATGTA+TGG - chr1_1:57066915-57066934 None:intergenic 20.0%
!! TTTAATCTGTGACAAATATA+TGG + chr1_1:57067172-57067191 Msa0030650:intron 20.0%
!!! ACTTTTTCTAAACAAAACAA+TGG - chr1_1:57067211-57067230 None:intergenic 20.0%
!! TTAATCTTATATTTCAGCTT+AGG - chr1_1:57067918-57067937 None:intergenic 20.0%
!!! CATAAATTTTATTTATCGAG+TGG - chr1_1:57068156-57068175 None:intergenic 20.0%
!!! AGTTTTATTATGTTGAAACT+TGG + chr1_1:57068297-57068316 Msa0030650:intron 20.0%
!! ATACAATAATCTACATAATG+TGG - chr1_1:57068330-57068349 None:intergenic 20.0%
!! TATGTAGATAAAGAATACTA+AGG + chr1_1:57068415-57068434 Msa0030650:intron 20.0%
!! ATGTAGATAAAGAATACTAA+GGG + chr1_1:57068416-57068435 Msa0030650:intron 20.0%
!! TAAAGATTTATGTTCTATGT+AGG + chr1_1:57068822-57068841 Msa0030650:intron 20.0%
!! AAAGATTTATGTTCTATGTA+GGG + chr1_1:57068823-57068842 Msa0030650:intron 20.0%
!! ATGACTTTATACTATGTTAA+CGG + chr1_1:57069587-57069606 Msa0030650:intron 20.0%
!! ACAAAATTTGTCAAAAATGA+GGG - chr1_1:57069642-57069661 None:intergenic 20.0%
!! AACAAAATTTGTCAAAAATG+AGG - chr1_1:57069643-57069662 None:intergenic 20.0%
!!! TCATTTTTGACAAATTTTGT+TGG + chr1_1:57069642-57069661 Msa0030650:intron 20.0%
!! AATAATAAAGTAGTTGAGAT+TGG - chr1_1:57069731-57069750 None:intergenic 20.0%
!! GACAGAATAAAAAATCAAAA+TGG + chr1_1:57070186-57070205 Msa0030650:CDS 20.0%
!! TAAAAAATCAAAATGGGATA+AGG + chr1_1:57070193-57070212 Msa0030650:CDS 20.0%
!!! TTCTATCTTTCTTTTGATTT+TGG + chr1_1:57070448-57070467 Msa0030650:intron 20.0%
!! TTAAATAGTTTCATTTCTCT+GGG + chr1_1:57070668-57070687 Msa0030650:intron 20.0%
!!! CACATAAACTTTAATTTTAG+TGG - chr1_1:57071062-57071081 None:intergenic 20.0%
!!! GTATCAACATTTAATTTTAG+TGG - chr1_1:57071176-57071195 None:intergenic 20.0%
!!! CAAGCAATGATATTTTTATA+CGG - chr1_1:57071545-57071564 None:intergenic 20.0%
!!! ATTTTGGAGAGAATGAAAAT+AGG - chr1_1:57066201-57066220 None:intergenic 25.0%
!!! GGTTTTGAAATTTGTTGAAT+TGG - chr1_1:57066297-57066316 None:intergenic 25.0%
! GAAAAAAAAAAAACTACCTC+CGG - chr1_1:57066674-57066693 None:intergenic 25.0%
!!! TTTTTTTTTTCCCTTTCTCT+TGG + chr1_1:57066683-57066702 Msa0030650:intron 25.0%
! AGTATGAAATGGTATATGTT+TGG + chr1_1:57066775-57066794 Msa0030650:intron 25.0%
!! AAGTTAGAATCAAATTTTGG+AGG + chr1_1:57066864-57066883 Msa0030650:intron 25.0%
! AATCTAACTAAACCTATGTT+TGG - chr1_1:57066977-57066996 None:intergenic 25.0%
! TAGTTAGATTATACACTGAA+AGG + chr1_1:57066987-57067006 Msa0030650:intron 25.0%
! ATTATACACTGAAAGGTAAT+GGG + chr1_1:57066994-57067013 Msa0030650:intron 25.0%
! AAATATATGGAAACTTCCAA+AGG + chr1_1:57067185-57067204 Msa0030650:intron 25.0%
! CACGAAAAAATTGTAACAAA+CGG + chr1_1:57067239-57067258 Msa0030650:intron 25.0%
! ACGAAAAAATTGTAACAAAC+GGG + chr1_1:57067240-57067259 Msa0030650:intron 25.0%
! TACAAGTAAGTTCTCTTTAA+TGG + chr1_1:57067557-57067576 Msa0030650:intron 25.0%
!!! TATAGTTGATGAATGTCATT+TGG + chr1_1:57067589-57067608 Msa0030650:intron 25.0%
!!! GTTTATATTGCCTTTGTTTT+GGG + chr1_1:57067892-57067911 Msa0030650:intron 25.0%
!! CTAACACCAATTTTTACATA+GGG - chr1_1:57068129-57068148 None:intergenic 25.0%
!! ACTAACACCAATTTTTACAT+AGG - chr1_1:57068130-57068149 None:intergenic 25.0%
! GGAGAAAAATAAGTGTTTAA+TGG - chr1_1:57068367-57068386 None:intergenic 25.0%
! TGTAGATAAAGAATACTAAG+GGG + chr1_1:57068417-57068436 Msa0030650:intron 25.0%
! ATAAATCCTATCATATCACT+AGG - chr1_1:57068729-57068748 None:intergenic 25.0%
! AAGATTTATGTTCTATGTAG+GGG + chr1_1:57068824-57068843 Msa0030650:intron 25.0%
!! GTAAATTGAATCTTTTGCTT+TGG + chr1_1:57068868-57068887 Msa0030650:intron 25.0%
! GATATCATGAAAATTGACAA+GGG - chr1_1:57068928-57068947 None:intergenic 25.0%
! CTCTGCAATAATCAATTTAA+AGG - chr1_1:57068950-57068969 None:intergenic 25.0%
!!! TAAATTTCTGGAGTATAAGA+AGG + chr1_1:57068979-57068998 Msa0030650:CDS 25.0%
!! AGTGACTTTTATGATCAAAT+AGG + chr1_1:57069148-57069167 Msa0030650:CDS 25.0%
! GGAAAACAAAATTCTAATAC+TGG - chr1_1:57069433-57069452 None:intergenic 25.0%
! CAAAATTTGTCAAAAATGAG+GGG - chr1_1:57069641-57069660 None:intergenic 25.0%
!! AATTAATGTTAGCGTTGTTT+TGG + chr1_1:57069781-57069800 Msa0030650:intron 25.0%
!!! AAAAGGTTGATTTTACTTCT+GGG + chr1_1:57069923-57069942 Msa0030650:CDS 25.0%
!!! TTTATGTTGACTTTTTGCAT+AGG + chr1_1:57070092-57070111 Msa0030650:intron 25.0%
! GTTAAATAGTTTCATTTCTC+TGG + chr1_1:57070667-57070686 Msa0030650:intron 25.0%
!!! GTATTTTTGCTGTAATTGTA+TGG + chr1_1:57070764-57070783 Msa0030650:intron 25.0%
!! TTTACAAACTCTGTTTTGTA+TGG + chr1_1:57070911-57070930 Msa0030650:intron 25.0%
!!! TAGATTTTGAAATCAAACTG+AGG - chr1_1:57070974-57070993 None:intergenic 25.0%
! CATAACATTGACAATAAACA+AGG - chr1_1:57071011-57071030 None:intergenic 25.0%
!!! TAGATTTTGAAATCAAACTG+AGG - chr1_1:57070974-57070993 None:intergenic 25.0%
! CATAACATTGACAATAAACA+AGG - chr1_1:57071011-57071030 None:intergenic 25.0%
AAGCAGAAAAAGAATGAAGA+CGG - chr1_1:57066133-57066152 None:intergenic 30.0%
AAACGCAGGAAAATTTGATT+TGG - chr1_1:57066175-57066194 None:intergenic 30.0%
GATTGGGGAAAATTAGTTAA+TGG - chr1_1:57066224-57066243 None:intergenic 30.0%
!! AGTGTTGATGTTTAACGATT+GGG - chr1_1:57066240-57066259 None:intergenic 30.0%
!! AAGTGTTGATGTTTAACGAT+TGG - chr1_1:57066241-57066260 None:intergenic 30.0%
! TTTCTGGAAGAGATGAAATT+CGG - chr1_1:57066272-57066291 None:intergenic 30.0%
!! ATTTGTTGAATTGGGTTTTC+TGG - chr1_1:57066288-57066307 None:intergenic 30.0%
GATTATACACTGAAAGGTAA+TGG + chr1_1:57066993-57067012 Msa0030650:intron 30.0%
CTGAAAATTGAACTTACCAT+TGG - chr1_1:57067097-57067116 None:intergenic 30.0%
CTGCAGAAAAATTTCATGTT+GGG - chr1_1:57067306-57067325 None:intergenic 30.0%
TTTCAATGTCTCCGAAAATT+GGG - chr1_1:57067398-57067417 None:intergenic 30.0%
ATTTCAATGTCTCCGAAAAT+TGG - chr1_1:57067399-57067418 None:intergenic 30.0%
AATCACATCGTCATTATTCA+CGG - chr1_1:57067428-57067447 None:intergenic 30.0%
AGAATATTGAATGCTTGATC+AGG - chr1_1:57067666-57067685 None:intergenic 30.0%
AAAGAAACTTTGGCAATTAG+AGG + chr1_1:57067709-57067728 Msa0030650:intron 30.0%
AAGAAACTTTGGCAATTAGA+GGG + chr1_1:57067710-57067729 Msa0030650:intron 30.0%
ATCTTATTACCTTTCTTTGC+TGG + chr1_1:57067753-57067772 Msa0030650:intron 30.0%
! CTGTAATTTTCACATTAGAG+TGG + chr1_1:57067870-57067889 Msa0030650:intron 30.0%
!! GGTTTATATTGCCTTTGTTT+TGG + chr1_1:57067891-57067910 Msa0030650:intron 30.0%
CTCGGTGAAAAATAAACATT+GGG - chr1_1:57068036-57068055 None:intergenic 30.0%
! ACTCGGTGAAAAATAAACAT+TGG - chr1_1:57068037-57068056 None:intergenic 30.0%
! TTTTTCACCGAGTAAAAAGA+TGG + chr1_1:57068044-57068063 Msa0030650:intron 30.0%
! TTTTCACCGAGTAAAAAGAT+GGG + chr1_1:57068045-57068064 Msa0030650:intron 30.0%
TCTTTCCGATTATTAGCAAA+AGG + chr1_1:57068225-57068244 Msa0030650:intron 30.0%
CTTTCCGATTATTAGCAAAA+GGG + chr1_1:57068226-57068245 Msa0030650:intron 30.0%
TTTCCGATTATTAGCAAAAG+GGG + chr1_1:57068227-57068246 Msa0030650:intron 30.0%
CAACATAATAAAACTTTGCC+TGG - chr1_1:57068292-57068311 None:intergenic 30.0%
ATTATGTTGAAACTTGGAAG+TGG + chr1_1:57068303-57068322 Msa0030650:intron 30.0%
AATGGTGAGTAAGTTATACA+AGG + chr1_1:57068479-57068498 Msa0030650:intron 30.0%
TAAGTTATACAAGGAACAAG+AGG + chr1_1:57068488-57068507 Msa0030650:intron 30.0%
AAGTTATACAAGGAACAAGA+GGG + chr1_1:57068489-57068508 Msa0030650:intron 30.0%
TATACTATAGAGAGTTAGTC+AGG + chr1_1:57068537-57068556 Msa0030650:intron 30.0%
AAGATCGAAGATTCAAATAC+TGG - chr1_1:57068660-57068679 None:intergenic 30.0%
ATCACTAGGTATTACATTTC+TGG - chr1_1:57068715-57068734 None:intergenic 30.0%
GTAATACCTAGTGATATGAT+AGG + chr1_1:57068720-57068739 Msa0030650:intron 30.0%
AGATTTATGTTCTATGTAGG+GGG + chr1_1:57068825-57068844 Msa0030650:intron 30.0%
! AATTGAATCTTTTGCTTTGG+TGG + chr1_1:57068871-57068890 Msa0030650:intron 30.0%
GGATATCATGAAAATTGACA+AGG - chr1_1:57068929-57068948 None:intergenic 30.0%
TACCAGGATATTGATCAAAT+AGG + chr1_1:57069079-57069098 Msa0030650:CDS 30.0%
ACCAGGATATTGATCAAATA+GGG + chr1_1:57069080-57069099 Msa0030650:CDS 30.0%
AAAGATGTATTTGATCCTCA+TGG + chr1_1:57069115-57069134 Msa0030650:CDS 30.0%
TTAGATAAAAGATGGAGAGA+GGG - chr1_1:57069185-57069204 None:intergenic 30.0%
ACTAACGCTTAGATAAAAGA+TGG - chr1_1:57069193-57069212 None:intergenic 30.0%
! ATCTTTTATCTAAGCGTTAG+TGG + chr1_1:57069192-57069211 Msa0030650:intron 30.0%
TATACTTTAAATCAGCCTTC+AGG - chr1_1:57069382-57069401 None:intergenic 30.0%
!! ATACTTTGAGGTTATCATTC+AGG + chr1_1:57069463-57069482 Msa0030650:intron 30.0%
GAACTTGTGTTAGAGTAATT+AGG + chr1_1:57069498-57069517 Msa0030650:intron 30.0%
TAGAGTAATTAGGATAAGCT+TGG + chr1_1:57069508-57069527 Msa0030650:intron 30.0%
TGATAGTCAAAATAGTAGTC+TGG - chr1_1:57069552-57069571 None:intergenic 30.0%
GGAAAGTAGTGTAAAAACAA+CGG - chr1_1:57069807-57069826 None:intergenic 30.0%
!!! TTCTGCTTTGTTTTAGACAA+CGG - chr1_1:57069845-57069864 None:intergenic 30.0%
! CAGAAGTAAAATCAACCTTT+TGG - chr1_1:57069924-57069943 None:intergenic 30.0%
!! CAAAAGGTTGATTTTACTTC+TGG + chr1_1:57069922-57069941 Msa0030650:CDS 30.0%
!! AAAGGTTGATTTTACTTCTG+GGG + chr1_1:57069924-57069943 Msa0030650:CDS 30.0%
ACTAAATTCTAGTGAATGAC+AGG + chr1_1:57070272-57070291 Msa0030650:intron 30.0%
! CAGTTTGTAAGATTTGAGTT+TGG + chr1_1:57070480-57070499 Msa0030650:intron 30.0%
! TGTAAGATTTGAGTTTGGTT+TGG + chr1_1:57070485-57070504 Msa0030650:intron 30.0%
!! TTGGAGTATTGAATTGAGAA+TGG + chr1_1:57070694-57070713 Msa0030650:intron 30.0%
!! TGGAGTATTGAATTGAGAAT+GGG + chr1_1:57070695-57070714 Msa0030650:intron 30.0%
GATTAGATGAAAGACTACAA+TGG - chr1_1:57070810-57070829 None:intergenic 30.0%
! AAAACTCTAAAAGAAGCACA+AGG - chr1_1:57070841-57070860 None:intergenic 30.0%
ATGAAAATAGGAGAAAACGC+AGG - chr1_1:57066189-57066208 None:intergenic 35.0%
! GTGTTGATGTTTAACGATTG+GGG - chr1_1:57066239-57066258 None:intergenic 35.0%
TCTTCTTTGATGCCATTGAA+GGG - chr1_1:57066325-57066344 None:intergenic 35.0%
TTCTTCTTTGATGCCATTGA+AGG - chr1_1:57066326-57066345 None:intergenic 35.0%
GGCATCAAAGAAGAAACAAT+CGG + chr1_1:57066331-57066350 Msa0030650:CDS 35.0%
TCAAAGAAGAAACAATCGGA+AGG + chr1_1:57066335-57066354 Msa0030650:CDS 35.0%
ATAATCAACTATCGTAAGCG+TGG - chr1_1:57066621-57066640 None:intergenic 35.0%
ACGCTTACGATAGTTGATTA+TGG + chr1_1:57066620-57066639 Msa0030650:CDS 35.0%
TACACCTCTTGAATCAGTTA+TGG + chr1_1:57066934-57066953 Msa0030650:intron 35.0%
!!! TGTTAGTTGGTTTTTGTTGC+AGG + chr1_1:57067017-57067036 Msa0030650:intron 35.0%
GTAGTGGTAGAGTTATGTTT+GGG + chr1_1:57067055-57067074 Msa0030650:CDS 35.0%
TAGTGGTAGAGTTATGTTTG+GGG + chr1_1:57067056-57067075 Msa0030650:CDS 35.0%
! TACCATTGGTTACATGATGT+TGG - chr1_1:57067083-57067102 None:intergenic 35.0%
CTAAACAAAACAATGGCCTT+TGG - chr1_1:57067204-57067223 None:intergenic 35.0%
ATTGTAACAAACGGGATCTT+AGG + chr1_1:57067248-57067267 Msa0030650:intron 35.0%
CCTGCAGAAAAATTTCATGT+TGG - chr1_1:57067307-57067326 None:intergenic 35.0%
! CCAACATGAAATTTTTCTGC+AGG + chr1_1:57067304-57067323 Msa0030650:intron 35.0%
TTGCTAGATAGAACATCATC+AGG + chr1_1:57067331-57067350 Msa0030650:CDS 35.0%
TTCAATGTCTCCGAAAATTG+GGG - chr1_1:57067397-57067416 None:intergenic 35.0%
GCATAAATCTGAAGATCCAT+TGG + chr1_1:57067489-57067508 Msa0030650:CDS 35.0%
GGAGGAAGAAATTTATCCAA+TGG - chr1_1:57067508-57067527 None:intergenic 35.0%
AGTTTAACTCAGCAATTGCA+TGG - chr1_1:57067630-57067649 None:intergenic 35.0%
ATGCAATTGCTGAGTTAAAC+TGG + chr1_1:57067629-57067648 Msa0030650:intron 35.0%
TCTATGCATTTCATGGAGAT+AGG + chr1_1:57067782-57067801 Msa0030650:intron 35.0%
AGGGTAAAGTAAAACAACAG+AGG - chr1_1:57068002-57068021 None:intergenic 35.0%
ACATTGGGATTCTACTATCA+GGG - chr1_1:57068021-57068040 None:intergenic 35.0%
AACATTGGGATTCTACTATC+AGG - chr1_1:57068022-57068041 None:intergenic 35.0%
! TTTCCACCCATCTTTTTACT+CGG - chr1_1:57068054-57068073 None:intergenic 35.0%
! TTGGTGCCCTATGTAAAAAT+TGG + chr1_1:57068120-57068139 Msa0030650:intron 35.0%
! CTTCCCCTTTTGCTAATAAT+CGG - chr1_1:57068233-57068252 None:intergenic 35.0%
TATTAGCAAAAGGGGAAGAA+AGG + chr1_1:57068235-57068254 Msa0030650:intron 35.0%
ACTACCATTGTTCAATAACC+AGG + chr1_1:57068271-57068290 Msa0030650:intron 35.0%
TTTGCCTGGTTATTGAACAA+TGG - chr1_1:57068278-57068297 None:intergenic 35.0%
ATAAAACTTCCAAGTAGCAG+AGG - chr1_1:57068392-57068411 None:intergenic 35.0%
AGTTATACAAGGAACAAGAG+GGG + chr1_1:57068490-57068509 Msa0030650:intron 35.0%
!!! CTTTTCCAGAGAAGTATTCT+CGG - chr1_1:57068566-57068585 None:intergenic 35.0%
! GAGAATACTTCTCTGGAAAA+GGG + chr1_1:57068565-57068584 Msa0030650:intron 35.0%
! ACAATCCAACTCTTTTTCCT+AGG + chr1_1:57068682-57068701 Msa0030650:intron 35.0%
ATATAATTGACCCCATCTAC+TGG + chr1_1:57068764-57068783 Msa0030650:intron 35.0%
ACCCTATTTGATCAATATCC+TGG - chr1_1:57069084-57069103 None:intergenic 35.0%
TCACTTGAATCATATCCATG+AGG - chr1_1:57069133-57069152 None:intergenic 35.0%
CTTAGATAAAAGATGGAGAG+AGG - chr1_1:57069186-57069205 None:intergenic 35.0%
ATCAATAGCATAACTCTCAG+TGG - chr1_1:57069341-57069360 None:intergenic 35.0%
! TTAAATCAGCCTTCAGGTTA+GGG - chr1_1:57069376-57069395 None:intergenic 35.0%
! TTTAAATCAGCCTTCAGGTT+AGG - chr1_1:57069377-57069396 None:intergenic 35.0%
! ATACTGGCATCGAAAATATG+AGG - chr1_1:57069417-57069436 None:intergenic 35.0%
CAAATTAGTAGATGCATGCA+AGG - chr1_1:57069673-57069692 None:intergenic 35.0%
!! AAGGTTGATTTTACTTCTGG+GGG + chr1_1:57069925-57069944 Msa0030650:CDS 35.0%
GTGATTTCTAAACCTGTAAC+AGG - chr1_1:57069994-57070013 None:intergenic 35.0%
! CAGCACTGAACAAATAAACT+AGG - chr1_1:57070016-57070035 None:intergenic 35.0%
!!! ATGTTGACTTTTTGCATAGG+TGG + chr1_1:57070095-57070114 Msa0030650:intron 35.0%
TTAATAGAATCAGCTGTAGG+AGG - chr1_1:57070155-57070174 None:intergenic 35.0%
CGATTAATAGAATCAGCTGT+AGG - chr1_1:57070158-57070177 None:intergenic 35.0%
! GCTGATTCTATTAATCGAGA+TGG + chr1_1:57070161-57070180 Msa0030650:CDS 35.0%
AAATTCTAGTGAATGACAGG+TGG + chr1_1:57070275-57070294 Msa0030650:intron 35.0%
AGAATGCAGAAAGAAGTTCA+AGG - chr1_1:57070432-57070451 None:intergenic 35.0%
!! GTTTCATTTCTCTGGGATAT+TGG + chr1_1:57070675-57070694 Msa0030650:intron 35.0%
!! AATGCTTTTTAGTGTAGCAG+TGG + chr1_1:57070740-57070759 Msa0030650:intron 35.0%
CTACAATGGAACAATCACAT+TGG - chr1_1:57070796-57070815 None:intergenic 35.0%
! TCTGTTTTGTATGGAGAAGA+TGG + chr1_1:57070920-57070939 Msa0030650:intron 35.0%
GATACAATTACCACTGTTGT+CGG + chr1_1:57071191-57071210 Msa0030650:intron 35.0%
ACACAACAGACCAAAATGAA+TGG - chr1_1:57071289-57071308 None:intergenic 35.0%
GTGTCAAACAGTGTTATAAG+CGG + chr1_1:57071305-57071324 Msa0030650:three_prime_UTR 35.0%
TGTCAAACAGTGTTATAAGC+GGG + chr1_1:57071306-57071325 Msa0030650:three_prime_UTR 35.0%
CAAACTCAAAGACAATACAG+TGG - chr1_1:57071589-57071608 None:intergenic 35.0%
!! TCTTTGAGTTTGTTGTACGA+GGG + chr1_1:57071597-57071616 Msa0030650:three_prime_UTR 35.0%
! GAAGAGATGAAATTCGGTGA+GGG - chr1_1:57066266-57066285 None:intergenic 40.0%
CTTCTTTGATGCCATTGAAG+GGG - chr1_1:57066324-57066343 None:intergenic 40.0%
AACGGTCATTCTATCCGTAT+CGG - chr1_1:57066495-57066514 None:intergenic 40.0%
! TCCGAATAGATTGTTTTCGC+CGG + chr1_1:57066553-57066572 Msa0030650:CDS 40.0%
ACCGGCGAAAACAATCTATT+CGG - chr1_1:57066557-57066576 None:intergenic 40.0%
AAAAAAACTACCTCCGGTTC+AGG - chr1_1:57066668-57066687 None:intergenic 40.0%
AGAGAATGCTCCAAGAGAAA+GGG - chr1_1:57066696-57066715 None:intergenic 40.0%
AAGAGAATGCTCCAAGAGAA+AGG - chr1_1:57066697-57066716 None:intergenic 40.0%
! TTCTCTTGGAGCATTCTCTT+TGG + chr1_1:57066697-57066716 Msa0030650:intron 40.0%
! GCAACCATAACTGATTCAAG+AGG - chr1_1:57066941-57066960 None:intergenic 40.0%
AGTTATGGTTGCTCCAAATG+TGG + chr1_1:57066949-57066968 Msa0030650:intron 40.0%
! CCTATGTTTGGTTCCACATT+TGG - chr1_1:57066965-57066984 None:intergenic 40.0%
CCAAATGTGGAACCAAACAT+AGG + chr1_1:57066962-57066981 Msa0030650:intron 40.0%
!! GAAAGGTAATGGGTGTTAGT+TGG + chr1_1:57067004-57067023 Msa0030650:intron 40.0%
!!! TAGTTGGTTTTTGTTGCAGG+AGG + chr1_1:57067020-57067039 Msa0030650:intron 40.0%
!!! AGTTGGTTTTTGTTGCAGGA+GGG + chr1_1:57067021-57067040 Msa0030650:intron 40.0%
! GGTAGTGGTAGAGTTATGTT+TGG + chr1_1:57067054-57067073 Msa0030650:CDS 40.0%
GACCAACATCATGTAACCAA+TGG + chr1_1:57067078-57067097 Msa0030650:CDS 40.0%
! GGAGTGTTAGCTTGATTGTT+AGG - chr1_1:57067376-57067395 None:intergenic 40.0%
! AGCTAACACTCCCCAATTTT+CGG + chr1_1:57067384-57067403 Msa0030650:CDS 40.0%
! TCCTCTGAGCATTTAACTTC+GGG - chr1_1:57067535-57067554 None:intergenic 40.0%
! CTCCTCTGAGCATTTAACTT+CGG - chr1_1:57067536-57067555 None:intergenic 40.0%
GTCAGCATCTATGCATTTCA+TGG + chr1_1:57067775-57067794 Msa0030650:intron 40.0%
CAGATTATTGTTGCTGAGAC+AGG - chr1_1:57067841-57067860 None:intergenic 40.0%
CTGTCTCAGCAACAATAATC+TGG + chr1_1:57067839-57067858 Msa0030650:intron 40.0%
! CCATTTTCTAATGCTGAGAG+CGG + chr1_1:57068090-57068109 Msa0030650:intron 40.0%
! CATTTTCTAATGCTGAGAGC+GGG + chr1_1:57068091-57068110 Msa0030650:intron 40.0%
! ATTTTCTAATGCTGAGAGCG+GGG + chr1_1:57068092-57068111 Msa0030650:intron 40.0%
AAGGGGAAGAAAGGAAAACA+AGG + chr1_1:57068244-57068263 Msa0030650:intron 40.0%
GGAGGAAAATCAGTGTCTAA+TGG + chr1_1:57068461-57068480 Msa0030650:intron 40.0%
GTTATACAAGGAACAAGAGG+GGG + chr1_1:57068491-57068510 Msa0030650:intron 40.0%
! CGAGAATACTTCTCTGGAAA+AGG + chr1_1:57068564-57068583 Msa0030650:intron 40.0%
TTATGTTCTATGTAGGGGGT+AGG + chr1_1:57068829-57068848 Msa0030650:intron 40.0%
!! TTTCTGGAGTATAAGAAGGC+AGG + chr1_1:57068983-57069002 Msa0030650:CDS 40.0%
TTAATGCAGAAGTTCGCAAC+AGG + chr1_1:57069014-57069033 Msa0030650:CDS 40.0%
GATGGAGAGAGGGAAAATTA+CGG - chr1_1:57069175-57069194 None:intergenic 40.0%
! TAAATCAGCCTTCAGGTTAG+GGG - chr1_1:57069375-57069394 None:intergenic 40.0%
! CCTCAAAGTATCTTGAGAAC+AGG - chr1_1:57069454-57069473 None:intergenic 40.0%
CCTGTTCTCAAGATACTTTG+AGG + chr1_1:57069451-57069470 Msa0030650:intron 40.0%
! TTTGAGGTTATCATTCAGGC+TGG + chr1_1:57069467-57069486 Msa0030650:intron 40.0%
TTGTCAAAAATGAGGGGAGA+GGG - chr1_1:57069635-57069654 None:intergenic 40.0%
TTTGTCAAAAATGAGGGGAG+AGG - chr1_1:57069636-57069655 None:intergenic 40.0%
CAACGGACAAAAGCAAATGA+GGG - chr1_1:57069828-57069847 None:intergenic 40.0%
ACAACGGACAAAAGCAAATG+AGG - chr1_1:57069829-57069848 None:intergenic 40.0%
ACAAAGCAGAAGCTGATATG+AGG + chr1_1:57069854-57069873 Msa0030650:intron 40.0%
ATATGAGGCGAGAAAGTGAT+AGG + chr1_1:57069869-57069888 Msa0030650:CDS 40.0%
! GAAGAAAGCACAGAACCAAA+AGG + chr1_1:57069906-57069925 Msa0030650:CDS 40.0%
! AACTACAGGTGGTTTGCATT+TGG + chr1_1:57070127-57070146 Msa0030650:CDS 40.0%
AGGATTCTGTATCTACAGCA+GGG + chr1_1:57070334-57070353 Msa0030650:CDS 40.0%
GTGTTATCTGCTACTAATGC+TGG + chr1_1:57070369-57070388 Msa0030650:CDS 40.0%
TTGCTGTAATTGTATGGCTC+AGG + chr1_1:57070770-57070789 Msa0030650:intron 40.0%
AGGAGAGAAGATCTAGTGAA+AGG + chr1_1:57071241-57071260 Msa0030650:CDS 40.0%
AGAGAAGATCTAGTGAAAGG+AGG + chr1_1:57071244-57071263 Msa0030650:CDS 40.0%
AAGATCTAGTGAAAGGAGGT+TGG + chr1_1:57071248-57071267 Msa0030650:CDS 40.0%
! AGATCCTGAGCCATTCATTT+TGG + chr1_1:57071276-57071295 Msa0030650:exon 40.0%
GTCAAACAGTGTTATAAGCG+GGG + chr1_1:57071307-57071326 Msa0030650:three_prime_UTR 40.0%
TCAAACAGTGTTATAAGCGG+GGG + chr1_1:57071308-57071327 Msa0030650:three_prime_UTR 40.0%
AAGAAATTTCCTGCTTCAGC+TGG + chr1_1:57071412-57071431 Msa0030650:three_prime_UTR 40.0%
AGCGGGAACAACTATTTCAT+GGG - chr1_1:57071493-57071512 None:intergenic 40.0%
!! GTCTTTGAGTTTGTTGTACG+AGG + chr1_1:57071596-57071615 Msa0030650:three_prime_UTR 40.0%
! GGAAGAGATGAAATTCGGTG+AGG - chr1_1:57066267-57066286 None:intergenic 45.0%
CAAAACCCTAACCCCTTCAA+TGG + chr1_1:57066310-57066329 Msa0030650:exon 45.0%
TGATGCCATTGAAGGGGTTA+GGG - chr1_1:57066318-57066337 None:intergenic 45.0%
TTGATGCCATTGAAGGGGTT+AGG - chr1_1:57066319-57066338 None:intergenic 45.0%
GGAAGATTTGACTGCCGATA+CGG + chr1_1:57066478-57066497 Msa0030650:CDS 45.0%
TTCATTTCCGGGATCAGCAA+CGG - chr1_1:57066513-57066532 None:intergenic 45.0%
GATCCCGGAAATGAAGTTAC+CGG + chr1_1:57066518-57066537 Msa0030650:CDS 45.0%
AGTAGCAATGTCACCTGAAC+CGG + chr1_1:57066652-57066671 Msa0030650:CDS 45.0%
! TCTGAGCATTTAACTTCGGG+TGG - chr1_1:57067532-57067551 None:intergenic 45.0%
ACCCGAAGTTAAATGCTCAG+AGG + chr1_1:57067531-57067550 Msa0030650:CDS 45.0%
AGATGCTGACCAGCAAAGAA+AGG - chr1_1:57067765-57067784 None:intergenic 45.0%
TCAGCTTAGGCCCAAAACAA+AGG - chr1_1:57067905-57067924 None:intergenic 45.0%
TCACCGAGTAAAAAGATGGG+TGG + chr1_1:57068048-57068067 Msa0030650:intron 45.0%
CCGCTCTCAGCATTAGAAAA+TGG - chr1_1:57068093-57068112 None:intergenic 45.0%
TTTCTCCTACCTCTGCTACT+TGG + chr1_1:57068380-57068399 Msa0030650:intron 45.0%
AACTTCCAAGTAGCAGAGGT+AGG - chr1_1:57068388-57068407 None:intergenic 45.0%
GAATACTAAGGGGCTGAACT+AGG + chr1_1:57068427-57068446 Msa0030650:intron 45.0%
GGGAAGAGAGAGATCAATTC+AGG + chr1_1:57068511-57068530 Msa0030650:intron 45.0%
CCATGCCTAGGAAAAAGAGT+TGG - chr1_1:57068690-57068709 None:intergenic 45.0%
! CCAACTCTTTTTCCTAGGCA+TGG + chr1_1:57068687-57068706 Msa0030650:intron 45.0%
!! ACATTTCTGGTACCATGCCT+AGG - chr1_1:57068702-57068721 None:intergenic 45.0%
ATTGACCCCATCTACTGGAA+TGG + chr1_1:57068769-57068788 Msa0030650:intron 45.0%
TTGACCCCATCTACTGGAAT+GGG + chr1_1:57068770-57068789 Msa0030650:intron 45.0%
CTTTCCCATTCCAGTAGATG+GGG - chr1_1:57068777-57068796 None:intergenic 45.0%
GCTTTCCCATTCCAGTAGAT+GGG - chr1_1:57068778-57068797 None:intergenic 45.0%
TCTATGTAGGGGGTAGGAAT+AGG + chr1_1:57068835-57068854 Msa0030650:intron 45.0%
GCAGTAAGAAGTCAGGGTTT+CGG - chr1_1:57069048-57069067 None:intergenic 45.0%
CAGCATGCAGTAAGAAGTCA+GGG - chr1_1:57069054-57069073 None:intergenic 45.0%
ACAGCATGCAGTAAGAAGTC+AGG - chr1_1:57069055-57069074 None:intergenic 45.0%
ACTTCTTACTGCATGCTGTG+AGG + chr1_1:57069056-57069075 Msa0030650:CDS 45.0%
!!! TGCTTTTTCCCCTAACCTGA+AGG + chr1_1:57069364-57069383 Msa0030650:intron 45.0%
! TGGCATCGAAAATATGAGGC+AGG - chr1_1:57069413-57069432 None:intergenic 45.0%
TACTATGTTAACGGTGCCTC+TGG + chr1_1:57069596-57069615 Msa0030650:intron 45.0%
ACACAACCAGGAATTGTGCT+TGG + chr1_1:57069949-57069968 Msa0030650:CDS 45.0%
TCTAGTGAATGACAGGTGGA+TGG + chr1_1:57070279-57070298 Msa0030650:intron 45.0%
AATGACAGGTGGATGGTGAT+CGG + chr1_1:57070286-57070305 Msa0030650:intron 45.0%
AAAATTCCTCTGCCCTCTGT+GGG + chr1_1:57070309-57070328 Msa0030650:CDS 45.0%
CAGGATTCTGTATCTACAGC+AGG + chr1_1:57070333-57070352 Msa0030650:CDS 45.0%
GGATTCTGTATCTACAGCAG+GGG + chr1_1:57070335-57070354 Msa0030650:CDS 45.0%
CTGACACGCAAATCACACAA+AGG - chr1_1:57070585-57070604 None:intergenic 45.0%
! AAAGAAGCACAAGGTGTGCA+AGG - chr1_1:57070832-57070851 None:intergenic 45.0%
AATTACCACTGTTGTCGGAC+AGG + chr1_1:57071196-57071215 Msa0030650:intron 45.0%
CAGACCAAAATGAATGGCTC+AGG - chr1_1:57071283-57071302 None:intergenic 45.0%
CTGCTGTCACACAGGAATAA+AGG - chr1_1:57071444-57071463 None:intergenic 45.0%
CTTTATTCCTGTGTGACAGC+AGG + chr1_1:57071442-57071461 Msa0030650:three_prime_UTR 45.0%
CATAAATCCTGCTGTCACAC+AGG - chr1_1:57071452-57071471 None:intergenic 45.0%
CAGCGGGAACAACTATTTCA+TGG - chr1_1:57071494-57071513 None:intergenic 45.0%
CATGAAATAGTTGTTCCCGC+TGG + chr1_1:57071492-57071511 Msa0030650:three_prime_UTR 45.0%
AAACCCAACCAATCAACCAG+CGG - chr1_1:57071511-57071530 None:intergenic 45.0%
!! TTGAATAAATAAATTAATTA+AGG - chr1_1:57069253-57069272 None:intergenic 5.0%
GTCGCTGTTGTCGTTGTACA+TGG - chr1_1:57066375-57066394 None:intergenic 50.0%
AGAAGAAGACGTGAATCGCC+AGG + chr1_1:57066418-57066437 Msa0030650:CDS 50.0%
AGAATGACCGTTGCTGATCC+CGG + chr1_1:57066503-57066522 Msa0030650:CDS 50.0%
TCGCCGGTAACTTCATTTCC+GGG - chr1_1:57066524-57066543 None:intergenic 50.0%
CTCGCCGGTAACTTCATTTC+CGG - chr1_1:57066525-57066544 None:intergenic 50.0%
GGAAATGAAGTTACCGGCGA+GGG + chr1_1:57066524-57066543 Msa0030650:CDS 50.0%
ATTCGGAGTAAAACCCTCGC+CGG - chr1_1:57066540-57066559 None:intergenic 50.0%
TTGCAGGAGGGAGAGATAGA+TGG + chr1_1:57067033-57067052 Msa0030650:intron 50.0%
GAGGGAGAGATAGATGGTAG+TGG + chr1_1:57067039-57067058 Msa0030650:CDS 50.0%
! AGACCTGATGATGCAGAGCT+TGG + chr1_1:57067448-57067467 Msa0030650:CDS 50.0%
TCTCCAAGCTCTGCATCATC+AGG - chr1_1:57067454-57067473 None:intergenic 50.0%
! CATTTAACTTCGGGTGGAGG+AGG - chr1_1:57067526-57067545 None:intergenic 50.0%
! GAGCATTTAACTTCGGGTGG+AGG - chr1_1:57067529-57067548 None:intergenic 50.0%
CTGAACTAGGAGAGGTAGGT+AGG + chr1_1:57068440-57068459 Msa0030650:intron 50.0%
AACTAGGAGAGGTAGGTAGG+AGG + chr1_1:57068443-57068462 Msa0030650:intron 50.0%
GGTCACCGAGAATACTTCTC+TGG + chr1_1:57068558-57068577 Msa0030650:intron 50.0%
CGCTTTCCCATTCCAGTAGA+TGG - chr1_1:57068779-57068798 None:intergenic 50.0%
!! TACTGGAATGGGAAAGCGCT+CGG + chr1_1:57068781-57068800 Msa0030650:intron 50.0%
TGCAGAAGTTCGCAACAGGA+AGG + chr1_1:57069018-57069037 Msa0030650:CDS 50.0%
GGGAGGAAAGCAAAATCCAG+AGG - chr1_1:57069615-57069634 None:intergenic 50.0%
TCAAAAATGAGGGGAGAGGG+AGG - chr1_1:57069632-57069651 None:intergenic 50.0%
GTAACAGGCATGCTGATCCT+GGG - chr1_1:57069979-57069998 None:intergenic 50.0%
TGTAACAGGCATGCTGATCC+TGG - chr1_1:57069980-57069999 None:intergenic 50.0%
AGGATCAGCATGCCTGTTAC+AGG + chr1_1:57069979-57069998 Msa0030650:CDS 50.0%
GAAAATTCCTCTGCCCTCTG+TGG + chr1_1:57070308-57070327 Msa0030650:CDS 50.0%
AAATTCCTCTGCCCTCTGTG+GGG + chr1_1:57070310-57070329 Msa0030650:CDS 50.0%
TCTGCTACTAATGCTGGCAG+TGG + chr1_1:57070375-57070394 Msa0030650:CDS 50.0%
CAGGCAACAAAAACGACGAG+AGG + chr1_1:57071215-57071234 Msa0030650:intron 50.0%
ACAAAAACGACGAGAGGCAG+AGG + chr1_1:57071221-57071240 Msa0030650:CDS 50.0%
ATTTCCTGCTTCAGCTGGTC+TGG + chr1_1:57071417-57071436 Msa0030650:three_prime_UTR 50.0%
! AGTTGTTCCCGCTGGTTGAT+TGG + chr1_1:57071500-57071519 Msa0030650:three_prime_UTR 50.0%
! TTCCCGCTGGTTGATTGGTT+GGG + chr1_1:57071505-57071524 Msa0030650:three_prime_UTR 50.0%
AACCCAACCAATCAACCAGC+GGG - chr1_1:57071510-57071529 None:intergenic 50.0%
CGACAACAGCGACGACGATA+TGG + chr1_1:57066382-57066401 Msa0030650:CDS 55.0%
AGAAGACGTGAATCGCCAGG+AGG + chr1_1:57066421-57066440 Msa0030650:CDS 55.0%
CGGAAATGAAGTTACCGGCG+AGG + chr1_1:57066523-57066542 Msa0030650:CDS 55.0%
ACCCGTTGTTGCTCTTGCAC+CGG - chr1_1:57066575-57066594 None:intergenic 55.0%
AGCAATGTCACCTGAACCGG+AGG + chr1_1:57066655-57066674 Msa0030650:CDS 55.0%
CTAAGGGGCTGAACTAGGAG+AGG + chr1_1:57068432-57068451 Msa0030650:intron 55.0%
! ACTGCATGCTGTGAGGTACC+AGG + chr1_1:57069063-57069082 Msa0030650:CDS 55.0%
! ACTTCTGGGGGTACACAACC+AGG + chr1_1:57069937-57069956 Msa0030650:CDS 55.0%
! GGAGCACCAAGCACAATTCC+TGG - chr1_1:57069958-57069977 None:intergenic 55.0%
!! GAATTGTGCTTGGTGCTCCC+AGG + chr1_1:57069959-57069978 Msa0030650:CDS 55.0%
! GGTGGTTCTGCTGCAACTAC+AGG + chr1_1:57070113-57070132 Msa0030650:intron 55.0%
GGTTCTGCTGCAACTACAGG+TGG + chr1_1:57070116-57070135 Msa0030650:CDS 55.0%
ACAGAATCCTGCCCCACAGA+GGG - chr1_1:57070324-57070343 None:intergenic 55.0%
TACAGAATCCTGCCCCACAG+AGG - chr1_1:57070325-57070344 None:intergenic 55.0%
TGTTGCCTGTCCGACAACAG+TGG - chr1_1:57071204-57071223 None:intergenic 55.0%
! GTTCCCGCTGGTTGATTGGT+TGG + chr1_1:57071504-57071523 Msa0030650:three_prime_UTR 55.0%
TGACGCCGTCGCTGAACAAG+CGG + chr1_1:57066451-57066470 Msa0030650:CDS 60.0%
CGCCGGTGCAAGAGCAACAA+CGG + chr1_1:57066570-57066589 Msa0030650:CDS 60.0%
GCCGGTGCAAGAGCAACAAC+GGG + chr1_1:57066571-57066590 Msa0030650:CDS 60.0%
GGTGCAAGAGCAACAACGGG+TGG + chr1_1:57066574-57066593 Msa0030650:CDS 60.0%
TGCTGAGAGCGGGGATGTCT+TGG + chr1_1:57068101-57068120 Msa0030650:intron 60.0%
GGGGCTGAACTAGGAGAGGT+AGG + chr1_1:57068436-57068455 Msa0030650:intron 60.0%
AGGACCAGACCAGCTGAAGC+AGG - chr1_1:57071424-57071443 None:intergenic 60.0%
CGGCGTCATCTTGCTCCTCC+TGG - chr1_1:57066439-57066458 None:intergenic 65.0%
CTCCGCCGCTTGTTCAGCGA+CGG - chr1_1:57066459-57066478 None:intergenic 65.0%
CGCCGTCGCTGAACAAGCGG+CGG + chr1_1:57066454-57066473 Msa0030650:CDS 70.0%
CGTCGCTGAACAAGCGGCGG+AGG + chr1_1:57066457-57066476 Msa0030650:CDS 70.0%
TCCTCTGCCCTCTGTGGGGC+AGG + chr1_1:57070314-57070333 Msa0030650:CDS 70.0%
TCCTGCCCCACAGAGGGCAG+AGG - chr1_1:57070318-57070337 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57066117 57071667 57066117 ID=Msa0030650;Name=Msa0030650
chr1_1 mRNA 57066117 57071667 57066117 ID=Msa0030650-mRNA-1;Parent=Msa0030650;Name=Msa0030650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=212|1|1|1|1|1|8|383|423
chr1_1 exon 57066117 57066676 57066117 ID=Msa0030650-mRNA-1:exon:17126;Parent=Msa0030650-mRNA-1
chr1_1 exon 57067039 57067099 57067039 ID=Msa0030650-mRNA-1:exon:17127;Parent=Msa0030650-mRNA-1
chr1_1 exon 57067326 57067561 57067326 ID=Msa0030650-mRNA-1:exon:17128;Parent=Msa0030650-mRNA-1
chr1_1 exon 57068968 57069169 57068968 ID=Msa0030650-mRNA-1:exon:17129;Parent=Msa0030650-mRNA-1
chr1_1 exon 57069863 57070000 57069863 ID=Msa0030650-mRNA-1:exon:17130;Parent=Msa0030650-mRNA-1
chr1_1 exon 57070114 57070214 57070114 ID=Msa0030650-mRNA-1:exon:17131;Parent=Msa0030650-mRNA-1
chr1_1 exon 57070294 57070412 57070294 ID=Msa0030650-mRNA-1:exon:17132;Parent=Msa0030650-mRNA-1
chr1_1 exon 57071218 57071667 57071218 ID=Msa0030650-mRNA-1:exon:17133;Parent=Msa0030650-mRNA-1
chr1_1 five_prime_UTR 57066117 57066328 57066117 ID=Msa0030650-mRNA-1:five_prime_utr;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57066329 57066676 57066329 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57067039 57067099 57067039 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57067326 57067561 57067326 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57068968 57069169 57068968 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57069863 57070000 57069863 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57070114 57070214 57070114 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57070294 57070412 57070294 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 CDS 57071218 57071284 57071218 ID=Msa0030650-mRNA-1:cds;Parent=Msa0030650-mRNA-1
chr1_1 three_prime_UTR 57071285 57071667 57071285 ID=Msa0030650-mRNA-1:three_prime_utr;Parent=Msa0030650-mRNA-1
Gene Sequence

>Msa0030650

ATGGCATCAAAGAAGAAACAATCGGAAGGAATCGCTTTGTTATCCATGTACAACGACAACAGCGACGACGATATGGAAGACGCTGAAGAAGAAGAAGACGTGAATCGCCAGGAGGAGCAAGATGACGCCGTCGCTGAACAAGCGGCGGAGGAAGATTTGACTGCCGATACGGATAGAATGACCGTTGCTGATCCCGGAAATGAAGTTACCGGCGAGGGTTTTACTCCGAATAGATTGTTTTCGCCGGTGCAAGAGCAACAACGGGTGGAATTGAAGATTAGTAAGAGCGCCACGCTTACGATAGTTGATTATGGTCATGATGAAGTAGCAATGTCACCTGAACCGGAGGAGGGAGAGATAGATGGTAGTGGTAGAGTTATGTTTGGGGACCAACATCATGTAACCAATGGCGATTTGCTAGATAGAACATCATCAGGAACAGCACAAATTTTGACACCTAACAATCAAGCTAACACTCCCCAATTTTCGGAGACATTGAAATCTGATACCGTGAATAATGACGATGTGATTAGACCTGATGATGCAGAGCTTGGAGAAGCAGATCAAGATGAGCATAAATCTGAAGATCCATTGGATAAATTTCTTCCTCCTCCACCCGAAGTTAAATGCTCAGAGGAGCTACAAAGAAAAATAAATAAATTTCTGGAGTATAAGAAGGCAGGAAAAAGTTTTAATGCAGAAGTTCGCAACAGGAAGGACTACCGAAACCCTGACTTCTTACTGCATGCTGTGAGGTACCAGGATATTGATCAAATAGGGTCTTGTTTCAGTAAAGATGTATTTGATCCTCATGGATATGATTCAAGTGACTTTTATGATCAAATAGAAGCTGATATGAGGCGAGAAAGTGATAGGAAAGAGCAAGAAAAGAAGAAAGCACAGAACCAAAAGGTTGATTTTACTTCTGGGGGTACACAACCAGGAATTGTGCTTGGTGCTCCCAGGATCAGCATGCCTGTTACAGGTGGTTCTGCTGCAACTACAGGTGGTTTGCATTTGGTGCCTCCTACAGCTGATTCTATTAATCGAGATGGTAGACAGAATAAAAAATCAAAATGGGATAAGGTGGATGGTGATCGGAAAATTCCTCTGCCCTCTGTGGGGCAGGATTCTGTATCTACAGCAGGGGCTCATGCAGCAGTGTTATCTGCTACTAATGCTGGCAGTGGATACATGCTATTTGCGCAACAAAAACGACGAGAGGCAGAGGAGAGAAGATCTAGTGAAAGGAGGTTGGAGAGAAGATCCTGA

Protein sequence

>Msa0030650

MASKKKQSEGIALLSMYNDNSDDDMEDAEEEEDVNRQEEQDDAVAEQAAEEDLTADTDRMTVADPGNEVTGEGFTPNRLFSPVQEQQRVELKISKSATLTIVDYGHDEVAMSPEPEEGEIDGSGRVMFGDQHHVTNGDLLDRTSSGTAQILTPNNQANTPQFSETLKSDTVNNDDVIRPDDAELGEADQDEHKSEDPLDKFLPPPPEVKCSEELQRKINKFLEYKKAGKSFNAEVRNRKDYRNPDFLLHAVRYQDIDQIGSCFSKDVFDPHGYDSSDFYDQIEADMRRESDRKEQEKKKAQNQKVDFTSGGTQPGIVLGAPRISMPVTGGSAATTGGLHLVPPTADSINRDGRQNKKSKWDKVDGDRKIPLPSVGQDSVSTAGAHAAVLSATNAGSGYMLFAQQKRREAEERRSSERRLERRS*