Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032550 | XP_024638592.1 | 94.017 | 234 | 1 | 1 | 1 | 234 | 1 | 221 | 2.86e-157 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032550 | sp|Q84J70|DI193_ARATH | 58.228 | 237 | 82 | 3 | 1 | 234 | 1 | 223 | 3.55e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032550 | Msa0576440 | 0.817016 | 4.103082e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032550 | MtrunA17_Chr1g0192501 | 99.194 | 124 | 1 | 0 | 111 | 234 | 15 | 138 | 1.20e-84 | 248 |
| Msa0032550 | MtrunA17_Chr1g0192511 | 96.364 | 110 | 3 | 1 | 1 | 110 | 1 | 109 | 1.93e-75 | 223 |
| Msa0032550 | MtrunA17_Chr7g0271941 | 75.610 | 123 | 28 | 1 | 114 | 234 | 1 | 123 | 1.90e-56 | 176 |
| Msa0032550 | MtrunA17_Chr7g0271931 | 65.833 | 120 | 24 | 4 | 1 | 103 | 1 | 120 | 1.21e-46 | 151 |
| Msa0032550 | MtrunA17_Chr2g0294971 | 57.944 | 107 | 38 | 2 | 1 | 104 | 1 | 103 | 9.62e-33 | 115 |
| Msa0032550 | MtrunA17_Chr7g0269721 | 49.451 | 91 | 46 | 0 | 14 | 104 | 5 | 95 | 1.82e-29 | 106 |
| Msa0032550 | MtrunA17_Chr4g0046711 | 45.545 | 101 | 53 | 1 | 7 | 105 | 6 | 106 | 4.88e-29 | 105 |
| Msa0032550 | MtrunA17_Chr4g0058391 | 29.146 | 199 | 107 | 6 | 36 | 233 | 35 | 200 | 1.82e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032550 | AT3G05700.1 | 58.228 | 237 | 82 | 3 | 1 | 234 | 1 | 223 | 3.61e-90 | 265 |
| Msa0032550 | AT5G26990.1 | 52.542 | 236 | 96 | 3 | 1 | 234 | 1 | 222 | 1.61e-80 | 241 |
| Msa0032550 | AT3G05700.2 | 60.099 | 203 | 64 | 3 | 1 | 200 | 1 | 189 | 2.14e-79 | 237 |
| Msa0032550 | AT1G56280.1 | 50.673 | 223 | 85 | 4 | 11 | 232 | 1 | 199 | 3.15e-66 | 204 |
| Msa0032550 | AT1G56280.2 | 51.208 | 207 | 75 | 5 | 27 | 232 | 24 | 205 | 1.96e-58 | 184 |
| Msa0032550 | AT5G49230.1 | 47.087 | 206 | 86 | 5 | 27 | 232 | 27 | 209 | 6.64e-57 | 180 |
| Msa0032550 | AT3G06760.1 | 48.585 | 212 | 91 | 4 | 27 | 234 | 27 | 224 | 1.47e-55 | 177 |
| Msa0032550 | AT5G49230.2 | 45.631 | 206 | 84 | 5 | 27 | 232 | 27 | 204 | 1.10e-52 | 169 |
| Msa0032550 | AT3G06760.2 | 44.340 | 212 | 110 | 5 | 27 | 234 | 27 | 234 | 2.37e-37 | 131 |
| Msa0032550 | AT1G02750.1 | 31.507 | 219 | 124 | 4 | 19 | 233 | 20 | 216 | 9.15e-28 | 105 |
| Msa0032550 | AT4G02200.1 | 35.468 | 203 | 101 | 6 | 34 | 231 | 32 | 209 | 1.34e-26 | 102 |
| Msa0032550 | AT4G02200.3 | 33.180 | 217 | 101 | 7 | 34 | 231 | 32 | 223 | 1.42e-22 | 92.4 |
| Msa0032550 | AT4G02200.2 | 33.846 | 195 | 99 | 6 | 34 | 223 | 32 | 201 | 4.48e-22 | 90.5 |
| Msa0032550 | AT1G02750.2 | 28.767 | 219 | 114 | 4 | 19 | 233 | 20 | 200 | 1.78e-20 | 86.3 |
Find 74 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATATGTAGATATGTTTA+TGG | 0.158593 | 1_1:+59733562 | Msa0032550:intron |
| CTGAAAGAGGATTAGGGTTT+TGG | 0.201422 | 1_1:-59732788 | None:intergenic |
| AACCTCATCTGATAATTTCT+TGG | 0.251118 | 1_1:-59734518 | None:intergenic |
| TACATGGAGATCCGCCAAAA+AGG | 0.298414 | 1_1:-59734384 | None:intergenic |
| TCGTCATTTATATCACCTTT+AGG | 0.299231 | 1_1:+59734445 | Msa0032550:CDS |
| TTGTGATCTGAAAGAGGATT+AGG | 0.304223 | 1_1:-59732795 | None:intergenic |
| TCAAAATACTCAGAACAAAA+TGG | 0.307531 | 1_1:-59733635 | None:intergenic |
| ACGACGCGGATGAAGATATA+AGG | 0.313415 | 1_1:+59733597 | Msa0032550:CDS |
| TAAATATACTTCCATGTTGT+AGG | 0.329218 | 1_1:-59734035 | None:intergenic |
| TCATCAAGATGTGATGCTTC+AGG | 0.332282 | 1_1:+59735415 | Msa0032550:three_prime_UTR |
| CAGATGAGGTTGTATCAAAA+AGG | 0.348269 | 1_1:+59734530 | Msa0032550:CDS |
| TCATATGTAGATATGTTTAT+GGG | 0.364564 | 1_1:+59733563 | Msa0032550:intron |
| CCCACCCTCAATGCACAAAC+TGG | 0.369022 | 1_1:-59733988 | None:intergenic |
| TTCACCCTAACAACAACAAA+AGG | 0.372684 | 1_1:-59732676 | None:intergenic |
| TGTGATCTGAAAGAGGATTA+GGG | 0.375527 | 1_1:-59732794 | None:intergenic |
| CAGTTTGTGCATTGAGGGTG+GGG | 0.399469 | 1_1:+59733989 | Msa0032550:CDS |
| GAGATGCAATCTGCAATCTA+TGG | 0.403146 | 1_1:+59735454 | Msa0032550:three_prime_UTR |
| AAAAGATGTGAGTTTGTTCA+AGG | 0.426089 | 1_1:+59735347 | Msa0032550:CDS |
| AATGACGACAGCAGCGGATC+AGG | 0.429498 | 1_1:-59734430 | None:intergenic |
| CCAGTTTGTGCATTGAGGGT+GGG | 0.436557 | 1_1:+59733988 | Msa0032550:CDS |
| GACACCAACCATGTCAGTTA+AGG | 0.447358 | 1_1:+59735307 | Msa0032550:CDS |
| ATTCTACACTTTCATTATTG+AGG | 0.450122 | 1_1:+59734332 | Msa0032550:CDS |
| CTCCTTGTCCTTAACTGACA+TGG | 0.453146 | 1_1:-59735315 | None:intergenic |
| CATCAAGATGTGATGCTTCA+GGG | 0.471749 | 1_1:+59735416 | Msa0032550:three_prime_UTR |
| TCCAGTTTGTGCATTGAGGG+TGG | 0.471839 | 1_1:+59733987 | Msa0032550:CDS |
| AGATGTGATGCTTCAGGGGC+GGG | 0.475467 | 1_1:+59735421 | Msa0032550:three_prime_UTR |
| ATGTCCAGTTTGTGCATTGA+GGG | 0.478451 | 1_1:+59733984 | Msa0032550:CDS |
| AAATATACTTCCATGTTGTA+GGG | 0.478691 | 1_1:-59734034 | None:intergenic |
| AGAAGAAGAAAAGAAGAAGA+AGG | 0.491005 | 1_1:-59732720 | None:intergenic |
| CGACGCGGATGAAGATATAA+GGG | 0.493789 | 1_1:+59733598 | Msa0032550:CDS |
| TACACTTTCATTATTGAGGA+AGG | 0.495459 | 1_1:+59734336 | Msa0032550:CDS |
| GCCGCTCTTCAATCCCGATC+AGG | 0.499368 | 1_1:+59732877 | Msa0032550:CDS |
| GAAGAAGAAGGAACCTGATC+GGG | 0.499752 | 1_1:-59732890 | None:intergenic |
| CCTCTTTCAGATCACAATCA+TGG | 0.517741 | 1_1:+59732801 | Msa0032550:exon |
| AAGAGCGGCTTGATAACGTC+TGG | 0.519588 | 1_1:-59732863 | None:intergenic |
| TTGAGGAAGGAGCTGAGAGA+AGG | 0.522683 | 1_1:+59734349 | Msa0032550:CDS |
| TCATGGACGGTGATTCCTCT+TGG | 0.522705 | 1_1:+59732818 | Msa0032550:exon |
| AGTTTGTGCATTGAGGGTGG+GGG | 0.526173 | 1_1:+59733990 | Msa0032550:CDS |
| GAGAATACATGCAGCGCAAG+AGG | 0.529554 | 1_1:+59734287 | Msa0032550:intron |
| AAGTGAGAGAGTGAGAGAGA+AGG | 0.539872 | 1_1:-59732747 | None:intergenic |
| TCACCCTAACAACAACAAAA+GGG | 0.540105 | 1_1:-59732675 | None:intergenic |
| AGAAGAAGAAGGAACCTGAT+CGG | 0.544190 | 1_1:-59732891 | None:intergenic |
| CTCGCAGATTCATTACCTAA+AGG | 0.546009 | 1_1:-59734460 | None:intergenic |
| ACATGGTTGGTGTCTCTACA+TGG | 0.547882 | 1_1:-59735298 | None:intergenic |
| CCATGATTGTGATCTGAAAG+AGG | 0.548620 | 1_1:-59732801 | None:intergenic |
| ATTTCTTTAAGCTTTATGAT+CGG | 0.553997 | 1_1:-59735601 | None:intergenic |
| TGGCTGAACCGAATAGAACT+TGG | 0.556571 | 1_1:-59734078 | None:intergenic |
| TAAATCGTCATCAAATATTG+TGG | 0.557897 | 1_1:-59735381 | None:intergenic |
| TATGTCCAGTTTGTGCATTG+AGG | 0.571210 | 1_1:+59733983 | Msa0032550:CDS |
| TTATGCTTCTGATTTCCCGT+AGG | 0.576139 | 1_1:+59735672 | Msa0032550:three_prime_UTR |
| GGCTTGATAACGTCTGGAAG+CGG | 0.576629 | 1_1:-59732857 | None:intergenic |
| GTGCCGGTGCATTTACCTAC+GGG | 0.579318 | 1_1:-59735687 | None:intergenic |
| CGCAAGAGGAAATCACGTAA+AGG | 0.589197 | 1_1:+59734301 | Msa0032550:CDS |
| ATCCAAGAAATTATCAGATG+AGG | 0.591393 | 1_1:+59734516 | Msa0032550:CDS |
| GGTGCCGGTGCATTTACCTA+CGG | 0.594112 | 1_1:-59735688 | None:intergenic |
| TTGTCCTTAACTGACATGGT+TGG | 0.595748 | 1_1:-59735311 | None:intergenic |
| AAAACAAGTTGCAGTAGCGA+AGG | 0.611417 | 1_1:-59735634 | None:intergenic |
| ATCAAGATGTGATGCTTCAG+GGG | 0.611725 | 1_1:+59735417 | Msa0032550:three_prime_UTR |
| TTGGGTGTTCTTCATCAATG+TGG | 0.616285 | 1_1:-59733676 | None:intergenic |
| CATTGATGAAGAACACCCAA+TGG | 0.620331 | 1_1:+59733679 | Msa0032550:CDS |
| TTAGACGAGGACACTATACA+TGG | 0.625691 | 1_1:-59734400 | None:intergenic |
| TTTGGATTGTGATGATGAGG+AGG | 0.647857 | 1_1:-59732770 | None:intergenic |
| AAGATGTGATGCTTCAGGGG+CGG | 0.652551 | 1_1:+59735420 | Msa0032550:three_prime_UTR |
| AAGAGGAAATCACGTAAAGG+TGG | 0.657544 | 1_1:+59734304 | Msa0032550:CDS |
| ACCTGATCGGGATTGAAGAG+CGG | 0.658265 | 1_1:-59732878 | None:intergenic |
| AGAGAGACGAGAAGACCAAG+AGG | 0.660889 | 1_1:-59732833 | None:intergenic |
| TTTCAGATCACAATCATGGA+CGG | 0.662516 | 1_1:+59732805 | Msa0032550:exon |
| GATATAAATGACGACAGCAG+CGG | 0.665482 | 1_1:-59734436 | None:intergenic |
| TGATGAAGAACACCCAATGG+AGG | 0.674724 | 1_1:+59733682 | Msa0032550:CDS |
| AACCATGTCAGTTAAGGACA+AGG | 0.681006 | 1_1:+59735313 | Msa0032550:CDS |
| ATCAGGTGCTGCATTAGACG+AGG | 0.688052 | 1_1:-59734413 | None:intergenic |
| TTTCCCGTAGGTAAATGCAC+CGG | 0.690359 | 1_1:+59735684 | Msa0032550:three_prime_UTR |
| CATGTCAGTTAAGGACAAGG+AGG | 0.702100 | 1_1:+59735316 | Msa0032550:CDS |
| GCTCACATAACCCTACAACA+TGG | 0.721119 | 1_1:+59734024 | Msa0032550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTTTAGATTAATTTT+TGG | - | chr1_1:59733051-59733070 | None:intergenic | 10.0% |
| !!! | TTTCATAAATTTTCTAAGAT+AGG | - | chr1_1:59733397-59733416 | None:intergenic | 15.0% |
| !! | TGTAAAAATCATTTAAGAAT+TGG | - | chr1_1:59734101-59734120 | None:intergenic | 15.0% |
| !!! | TATGAAGTTTACTTATTTTA+AGG | + | chr1_1:59734185-59734204 | Msa0032550:intron | 15.0% |
| !! | CAATCAATAATAAGATAAAA+AGG | + | chr1_1:59734209-59734228 | Msa0032550:intron | 15.0% |
| !! | TTCATATGTAGATATGTTTA+TGG | + | chr1_1:59733562-59733581 | Msa0032550:intron | 20.0% |
| !! | TCATATGTAGATATGTTTAT+GGG | + | chr1_1:59733563-59733582 | Msa0032550:intron | 20.0% |
| !! | ATATGAAATGTTCAAGAAAT+TGG | + | chr1_1:59734657-59734676 | Msa0032550:intron | 20.0% |
| !! | AACATTTCTTCAAACTTAAA+TGG | + | chr1_1:59734874-59734893 | Msa0032550:intron | 20.0% |
| !! | ATGTTTATGATAGAACATTA+TGG | + | chr1_1:59734985-59735004 | Msa0032550:intron | 20.0% |
| !! | TACATACAAAGCAAATAAAA+TGG | - | chr1_1:59735105-59735124 | None:intergenic | 20.0% |
| !!! | CTACTTTTTATTTTTTCACT+AGG | - | chr1_1:59735509-59735528 | None:intergenic | 20.0% |
| !!! | ATTTCTTTAAGCTTTATGAT+CGG | - | chr1_1:59735604-59735623 | None:intergenic | 20.0% |
| ! | GAATTATATGTAATCGCAAT+TGG | + | chr1_1:59733172-59733191 | Msa0032550:intron | 25.0% |
| ! | AACAATTTAAATTCCACTGA+TGG | - | chr1_1:59733225-59733244 | None:intergenic | 25.0% |
| ! | TCAGTGGAATTTAAATTGTT+TGG | + | chr1_1:59733225-59733244 | Msa0032550:intron | 25.0% |
| ! | TTAAGCTGTTTATTCCAAAA+GGG | - | chr1_1:59733304-59733323 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATTCCAAA+AGG | - | chr1_1:59733305-59733324 | None:intergenic | 25.0% |
| ! | AAATACTTGCACATAAACAT+AGG | - | chr1_1:59733521-59733540 | None:intergenic | 25.0% |
| ! | TCAAAATACTCAGAACAAAA+TGG | - | chr1_1:59733638-59733657 | None:intergenic | 25.0% |
| !!! | TCTGAGTATTTTGATATTGT+TGG | + | chr1_1:59733644-59733663 | Msa0032550:CDS | 25.0% |
| ! | TTTCCCTGTTTATTTCATAT+AGG | + | chr1_1:59733845-59733864 | Msa0032550:intron | 25.0% |
| ! | TCACCTATATGAAATAAACA+GGG | - | chr1_1:59733851-59733870 | None:intergenic | 25.0% |
| ! | TTCACCTATATGAAATAAAC+AGG | - | chr1_1:59733852-59733871 | None:intergenic | 25.0% |
| ! | AAATATACTTCCATGTTGTA+GGG | - | chr1_1:59734037-59734056 | None:intergenic | 25.0% |
| ! | TAAATATACTTCCATGTTGT+AGG | - | chr1_1:59734038-59734057 | None:intergenic | 25.0% |
| ! | ATTCTACACTTTCATTATTG+AGG | + | chr1_1:59734332-59734351 | Msa0032550:CDS | 25.0% |
| ! | TATCACATATCAATTCAGTT+AGG | - | chr1_1:59734586-59734605 | None:intergenic | 25.0% |
| ! | AACTGAATTGATATGTGATA+TGG | + | chr1_1:59734586-59734605 | Msa0032550:intron | 25.0% |
| ! | ACAATATTTAGTATTCTCAC+AGG | - | chr1_1:59734629-59734648 | None:intergenic | 25.0% |
| ! | TTATCTGTGAATTTAGTTAC+AGG | + | chr1_1:59734959-59734978 | Msa0032550:intron | 25.0% |
| ! | TTTCCAATAACATTACACAA+TGG | + | chr1_1:59735224-59735243 | Msa0032550:intron | 25.0% |
| ! | TAAATCGTCATCAAATATTG+TGG | - | chr1_1:59735384-59735403 | None:intergenic | 25.0% |
| !! | AGAAGCATAAAAAGTTCTAA+AGG | - | chr1_1:59735662-59735681 | None:intergenic | 25.0% |
| AGAAGAAGAAAAGAAGAAGA+AGG | - | chr1_1:59732723-59732742 | None:intergenic | 30.0% | |
| TATAGAGAGAAAGAAATTGG+GGG | - | chr1_1:59732932-59732951 | None:intergenic | 30.0% | |
| CTATAGAGAGAAAGAAATTG+GGG | - | chr1_1:59732933-59732952 | None:intergenic | 30.0% | |
| GCTATAGAGAGAAAGAAATT+GGG | - | chr1_1:59732934-59732953 | None:intergenic | 30.0% | |
| AGCTATAGAGAGAAAGAAAT+TGG | - | chr1_1:59732935-59732954 | None:intergenic | 30.0% | |
| GAGCTAGTATCTATATGTAA+AGG | - | chr1_1:59732982-59733001 | None:intergenic | 30.0% | |
| ATATAGATACTAGCTCAGTT+AGG | + | chr1_1:59732986-59733005 | Msa0032550:intron | 30.0% | |
| TATAGATACTAGCTCAGTTA+GGG | + | chr1_1:59732987-59733006 | Msa0032550:intron | 30.0% | |
| !!! | GTGTTTTAGTTGTTGCTAAT+AGG | + | chr1_1:59733138-59733157 | Msa0032550:intron | 30.0% |
| TTATTCCAAAAGGGTTTAAG+TGG | - | chr1_1:59733295-59733314 | None:intergenic | 30.0% | |
| CTCAAATAAGTCAATCCTAA+CGG | + | chr1_1:59733471-59733490 | Msa0032550:intron | 30.0% | |
| TCAAATAAGTCAATCCTAAC+GGG | + | chr1_1:59733472-59733491 | Msa0032550:intron | 30.0% | |
| ACATAAACATAGGAGTAAAG+AGG | - | chr1_1:59733511-59733530 | None:intergenic | 30.0% | |
| TGTTTATGTGCAAGTATTTG+TGG | + | chr1_1:59733522-59733541 | Msa0032550:intron | 30.0% | |
| TATTTGTGGTTATTGATGTG+AGG | + | chr1_1:59733536-59733555 | Msa0032550:intron | 30.0% | |
| ! | CTTACAAGGTTTTCAGTATT+GGG | + | chr1_1:59733762-59733781 | Msa0032550:intron | 30.0% |
| AGGAATGAACAAAAGCTTTA+CGG | - | chr1_1:59733816-59733835 | None:intergenic | 30.0% | |
| AAACAGGGAAATATATGTAG+AGG | - | chr1_1:59733836-59733855 | None:intergenic | 30.0% | |
| ! | AGAACTTGGTGAGAAAAAAA+AGG | - | chr1_1:59734067-59734086 | None:intergenic | 30.0% |
| ! | TTTTCTCACCAAGTTCTATT+CGG | + | chr1_1:59734070-59734089 | Msa0032550:CDS | 30.0% |
| TGAAACCATACTCTATTACT+TGG | + | chr1_1:59734241-59734260 | Msa0032550:intron | 30.0% | |
| TTCAACCAAGTAATAGAGTA+TGG | - | chr1_1:59734249-59734268 | None:intergenic | 30.0% | |
| TACACTTTCATTATTGAGGA+AGG | + | chr1_1:59734336-59734355 | Msa0032550:CDS | 30.0% | |
| TCGTCATTTATATCACCTTT+AGG | + | chr1_1:59734445-59734464 | Msa0032550:CDS | 30.0% | |
| ATCCAAGAAATTATCAGATG+AGG | + | chr1_1:59734516-59734535 | Msa0032550:CDS | 30.0% | |
| AACCTCATCTGATAATTTCT+TGG | - | chr1_1:59734521-59734540 | None:intergenic | 30.0% | |
| GAAATGTTCAAGAAATTGGT+AGG | + | chr1_1:59734661-59734680 | Msa0032550:intron | 30.0% | |
| ! | ACAGTGAAATAAAGCTTTTC+AGG | - | chr1_1:59734770-59734789 | None:intergenic | 30.0% |
| !! | AAGCTTTATTTCACTGTTTC+TGG | + | chr1_1:59734773-59734792 | Msa0032550:intron | 30.0% |
| TATAATTTGATCCATGTAGC+CGG | + | chr1_1:59735008-59735027 | Msa0032550:intron | 30.0% | |
| AAATGGTCAATTGAATAAGC+TGG | - | chr1_1:59735088-59735107 | None:intergenic | 30.0% | |
| ACTAAATTGATTGATCGTTC+AGG | - | chr1_1:59735162-59735181 | None:intergenic | 30.0% | |
| ATGCCATTGTGTAATGTTAT+TGG | - | chr1_1:59735230-59735249 | None:intergenic | 30.0% | |
| ! | AAAAGATGTGAGTTTGTTCA+AGG | + | chr1_1:59735347-59735366 | Msa0032550:CDS | 30.0% |
| TGTGATCTGAAAGAGGATTA+GGG | - | chr1_1:59732797-59732816 | None:intergenic | 35.0% | |
| TTGTGATCTGAAAGAGGATT+AGG | - | chr1_1:59732798-59732817 | None:intergenic | 35.0% | |
| TTTCAGATCACAATCATGGA+CGG | + | chr1_1:59732805-59732824 | Msa0032550:exon | 35.0% | |
| AGATTATTGAGATCCATCAG+TGG | + | chr1_1:59733209-59733228 | Msa0032550:intron | 35.0% | |
| ! | TTGTACCACTTAAACCCTTT+TGG | + | chr1_1:59733287-59733306 | Msa0032550:intron | 35.0% |
| GCAAATAATTAGAACCCGTT+AGG | - | chr1_1:59733489-59733508 | None:intergenic | 35.0% | |
| CTGGTTGGAAAAACAACATA+AGG | - | chr1_1:59733742-59733761 | None:intergenic | 35.0% | |
| ATACTGAAAACCTTGTAAGC+TGG | - | chr1_1:59733761-59733780 | None:intergenic | 35.0% | |
| ! | GCTTACAAGGTTTTCAGTAT+TGG | + | chr1_1:59733761-59733780 | Msa0032550:intron | 35.0% |
| ATTATGACATTTCTGTGTGC+AGG | + | chr1_1:59733960-59733979 | Msa0032550:intron | 35.0% | |
| CTGCATGTATTCTCTTGTTA+AGG | - | chr1_1:59734281-59734300 | None:intergenic | 35.0% | |
| ! | GGAAATTTGCAATCCCTTTT+TGG | + | chr1_1:59734370-59734389 | Msa0032550:CDS | 35.0% |
| ! | AATTTGCAATCCCTTTTTGG+CGG | + | chr1_1:59734373-59734392 | Msa0032550:CDS | 35.0% |
| CAGATGAGGTTGTATCAAAA+AGG | + | chr1_1:59734530-59734549 | Msa0032550:CDS | 35.0% | |
| CTCACAGGAAAAACAATGAT+TGG | - | chr1_1:59734614-59734633 | None:intergenic | 35.0% | |
| TGGTACTAGTGTTTGAAAAC+AGG | + | chr1_1:59734793-59734812 | Msa0032550:intron | 35.0% | |
| TTTAACATGCCAACATCATG+CGG | - | chr1_1:59734938-59734957 | None:intergenic | 35.0% | |
| ! | TAAGCCTTATCCCACTAAAT+GGG | - | chr1_1:59735035-59735054 | None:intergenic | 35.0% |
| !! | TAGGTGTTGTTGTTGTTAGT+TGG | + | chr1_1:59735053-59735072 | Msa0032550:intron | 35.0% |
| GAAAGGCTACAAATACAATC+AGG | - | chr1_1:59735138-59735157 | None:intergenic | 35.0% | |
| CACAGACAATATTTGCAACA+AGG | - | chr1_1:59735186-59735205 | None:intergenic | 35.0% | |
| ! | TTTGGATTGTGATGATGAGG+AGG | - | chr1_1:59732773-59732792 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATTGTGATGATG+AGG | - | chr1_1:59732776-59732795 | None:intergenic | 40.0% |
| ! | CTGAAAGAGGATTAGGGTTT+TGG | - | chr1_1:59732791-59732810 | None:intergenic | 40.0% |
| CCATGATTGTGATCTGAAAG+AGG | - | chr1_1:59732804-59732823 | None:intergenic | 40.0% | |
| CCTCTTTCAGATCACAATCA+TGG | + | chr1_1:59732801-59732820 | Msa0032550:exon | 40.0% | |
| AGAAGAAGAAGGAACCTGAT+CGG | - | chr1_1:59732894-59732913 | None:intergenic | 40.0% | |
| AAAAAGGGGAGAGAAGAAGA+AGG | - | chr1_1:59732905-59732924 | None:intergenic | 40.0% | |
| AAATTGGGGGAAGGAAAAAG+GGG | - | chr1_1:59732919-59732938 | None:intergenic | 40.0% | |
| GAAATTGGGGGAAGGAAAAA+GGG | - | chr1_1:59732920-59732939 | None:intergenic | 40.0% | |
| AGAAATTGGGGGAAGGAAAA+AGG | - | chr1_1:59732921-59732940 | None:intergenic | 40.0% | |
| TTGGGTGTTCTTCATCAATG+TGG | - | chr1_1:59733679-59733698 | None:intergenic | 40.0% | |
| CATTGATGAAGAACACCCAA+TGG | + | chr1_1:59733679-59733698 | Msa0032550:CDS | 40.0% | |
| ACCCAATGGAGGCAAAAAAT+GGG | + | chr1_1:59733693-59733712 | Msa0032550:CDS | 40.0% | |
| ! | GTTTTTCCAACCAGCTTACA+AGG | + | chr1_1:59733748-59733767 | Msa0032550:intron | 40.0% |
| TGAAAACCTTGTAAGCTGGT+TGG | - | chr1_1:59733757-59733776 | None:intergenic | 40.0% | |
| TATGTCCAGTTTGTGCATTG+AGG | + | chr1_1:59733983-59734002 | Msa0032550:CDS | 40.0% | |
| ATGTCCAGTTTGTGCATTGA+GGG | + | chr1_1:59733984-59734003 | Msa0032550:CDS | 40.0% | |
| AAGAGGAAATCACGTAAAGG+TGG | + | chr1_1:59734304-59734323 | Msa0032550:CDS | 40.0% | |
| TTAGACGAGGACACTATACA+TGG | - | chr1_1:59734403-59734422 | None:intergenic | 40.0% | |
| GATATAAATGACGACAGCAG+CGG | - | chr1_1:59734439-59734458 | None:intergenic | 40.0% | |
| CTCGCAGATTCATTACCTAA+AGG | - | chr1_1:59734463-59734482 | None:intergenic | 40.0% | |
| GTGCGACAGAAATGATAAGT+AGG | - | chr1_1:59734739-59734758 | None:intergenic | 40.0% | |
| ! | CGCGAAACATTTGACAGTTT+TGG | + | chr1_1:59734820-59734839 | Msa0032550:intron | 40.0% |
| ! | AAGCCTTATCCCACTAAATG+GGG | - | chr1_1:59735034-59735053 | None:intergenic | 40.0% |
| ! | CTAAGCCTTATCCCACTAAA+TGG | - | chr1_1:59735036-59735055 | None:intergenic | 40.0% |
| CATTTAGTGGGATAAGGCTT+AGG | + | chr1_1:59735034-59735053 | Msa0032550:intron | 40.0% | |
| TGATTGATCGTTCAGGTGAA+AGG | - | chr1_1:59735155-59735174 | None:intergenic | 40.0% | |
| ATATTGTCTGTGCCTTGCTA+AGG | + | chr1_1:59735194-59735213 | Msa0032550:intron | 40.0% | |
| TATTGTCTGTGCCTTGCTAA+GGG | + | chr1_1:59735195-59735214 | Msa0032550:intron | 40.0% | |
| GGAAAATTATGCCCTTAGCA+AGG | - | chr1_1:59735209-59735228 | None:intergenic | 40.0% | |
| GCATGAGTTCTATTGTCAAC+TGG | + | chr1_1:59735246-59735265 | Msa0032550:intron | 40.0% | |
| TTGTCCTTAACTGACATGGT+TGG | - | chr1_1:59735314-59735333 | None:intergenic | 40.0% | |
| AACCATGTCAGTTAAGGACA+AGG | + | chr1_1:59735313-59735332 | Msa0032550:CDS | 40.0% | |
| TCATCAAGATGTGATGCTTC+AGG | + | chr1_1:59735415-59735434 | Msa0032550:three_prime_UTR | 40.0% | |
| CATCAAGATGTGATGCTTCA+GGG | + | chr1_1:59735416-59735435 | Msa0032550:three_prime_UTR | 40.0% | |
| ATCAAGATGTGATGCTTCAG+GGG | + | chr1_1:59735417-59735436 | Msa0032550:three_prime_UTR | 40.0% | |
| GAGATGCAATCTGCAATCTA+TGG | + | chr1_1:59735454-59735473 | Msa0032550:three_prime_UTR | 40.0% | |
| AAAACAAGTTGCAGTAGCGA+AGG | - | chr1_1:59735637-59735656 | None:intergenic | 40.0% | |
| TTATGCTTCTGATTTCCCGT+AGG | + | chr1_1:59735672-59735691 | Msa0032550:three_prime_UTR | 40.0% | |
| AAGTGAGAGAGTGAGAGAGA+AGG | - | chr1_1:59732750-59732769 | None:intergenic | 45.0% | |
| GAAGAAGAAGGAACCTGATC+GGG | - | chr1_1:59732893-59732912 | None:intergenic | 45.0% | |
| GAGAGAAAGAAATTGGGGGA+AGG | - | chr1_1:59732928-59732947 | None:intergenic | 45.0% | |
| ACGACGCGGATGAAGATATA+AGG | + | chr1_1:59733597-59733616 | Msa0032550:CDS | 45.0% | |
| CGACGCGGATGAAGATATAA+GGG | + | chr1_1:59733598-59733617 | Msa0032550:CDS | 45.0% | |
| TGATGAAGAACACCCAATGG+AGG | + | chr1_1:59733682-59733701 | Msa0032550:CDS | 45.0% | |
| CACCCAATGGAGGCAAAAAA+TGG | + | chr1_1:59733692-59733711 | Msa0032550:CDS | 45.0% | |
| !!! | CCCCATTTTTTGCCTCCATT+GGG | - | chr1_1:59733697-59733716 | None:intergenic | 45.0% |
| CCCAATGGAGGCAAAAAATG+GGG | + | chr1_1:59733694-59733713 | Msa0032550:CDS | 45.0% | |
| !!! | ACCCCATTTTTTGCCTCCAT+TGG | - | chr1_1:59733698-59733717 | None:intergenic | 45.0% |
| GCTCACATAACCCTACAACA+TGG | + | chr1_1:59734024-59734043 | Msa0032550:CDS | 45.0% | |
| TGGCTGAACCGAATAGAACT+TGG | - | chr1_1:59734081-59734100 | None:intergenic | 45.0% | |
| CGCAAGAGGAAATCACGTAA+AGG | + | chr1_1:59734301-59734320 | Msa0032550:CDS | 45.0% | |
| ACATGGAGATCCGCCAAAAA+GGG | - | chr1_1:59734386-59734405 | None:intergenic | 45.0% | |
| TACATGGAGATCCGCCAAAA+AGG | - | chr1_1:59734387-59734406 | None:intergenic | 45.0% | |
| ! | ATGCGGTTGGTACTAATAGC+GGG | - | chr1_1:59734921-59734940 | None:intergenic | 45.0% |
| ! | CATGCGGTTGGTACTAATAG+CGG | - | chr1_1:59734922-59734941 | None:intergenic | 45.0% |
| TAGTACCAACCGCATGATGT+TGG | + | chr1_1:59734926-59734945 | Msa0032550:intron | 45.0% | |
| ! | ACATGGTTGGTGTCTCTACA+TGG | - | chr1_1:59735301-59735320 | None:intergenic | 45.0% |
| GACACCAACCATGTCAGTTA+AGG | + | chr1_1:59735307-59735326 | Msa0032550:CDS | 45.0% | |
| CTCCTTGTCCTTAACTGACA+TGG | - | chr1_1:59735318-59735337 | None:intergenic | 45.0% | |
| CATGTCAGTTAAGGACAAGG+AGG | + | chr1_1:59735316-59735335 | Msa0032550:CDS | 45.0% | |
| TCATGGACGGTGATTCCTCT+TGG | + | chr1_1:59732818-59732837 | Msa0032550:exon | 50.0% | |
| AGAGAGACGAGAAGACCAAG+AGG | - | chr1_1:59732836-59732855 | None:intergenic | 50.0% | |
| !! | GGCTTGATAACGTCTGGAAG+CGG | - | chr1_1:59732860-59732879 | None:intergenic | 50.0% |
| !! | AAGAGCGGCTTGATAACGTC+TGG | - | chr1_1:59732866-59732885 | None:intergenic | 50.0% |
| ACCTGATCGGGATTGAAGAG+CGG | - | chr1_1:59732881-59732900 | None:intergenic | 50.0% | |
| !! | GGGTTTTGATGAGAACGACG+CGG | + | chr1_1:59733583-59733602 | Msa0032550:CDS | 50.0% |
| TCCAGTTTGTGCATTGAGGG+TGG | + | chr1_1:59733987-59734006 | Msa0032550:CDS | 50.0% | |
| CCAGTTTGTGCATTGAGGGT+GGG | + | chr1_1:59733988-59734007 | Msa0032550:CDS | 50.0% | |
| CAGTTTGTGCATTGAGGGTG+GGG | + | chr1_1:59733989-59734008 | Msa0032550:CDS | 50.0% | |
| AGTTTGTGCATTGAGGGTGG+GGG | + | chr1_1:59733990-59734009 | Msa0032550:CDS | 50.0% | |
| !! | ATTGAGGGTGGGGGTTGATA+TGG | + | chr1_1:59733999-59734018 | Msa0032550:CDS | 50.0% |
| GAGAATACATGCAGCGCAAG+AGG | + | chr1_1:59734287-59734306 | Msa0032550:intron | 50.0% | |
| TTGAGGAAGGAGCTGAGAGA+AGG | + | chr1_1:59734349-59734368 | Msa0032550:CDS | 50.0% | |
| ! | ATCAGGTGCTGCATTAGACG+AGG | - | chr1_1:59734416-59734435 | None:intergenic | 50.0% |
| ACATGCCAACATCATGCGGT+TGG | - | chr1_1:59734934-59734953 | None:intergenic | 50.0% | |
| CTTATCCCACTAAATGGGGC+CGG | - | chr1_1:59735030-59735049 | None:intergenic | 50.0% | |
| AAGATGTGATGCTTCAGGGG+CGG | + | chr1_1:59735420-59735439 | Msa0032550:three_prime_UTR | 50.0% | |
| CCCACCCTCAATGCACAAAC+TGG | - | chr1_1:59733991-59734010 | None:intergenic | 55.0% | |
| AATGACGACAGCAGCGGATC+AGG | - | chr1_1:59734433-59734452 | None:intergenic | 55.0% | |
| ACTAAATGGGGCCGGCTACA+TGG | - | chr1_1:59735022-59735041 | None:intergenic | 55.0% | |
| ATGTAGCCGGCCCCATTTAG+TGG | + | chr1_1:59735021-59735040 | Msa0032550:intron | 55.0% | |
| TGTAGCCGGCCCCATTTAGT+GGG | + | chr1_1:59735022-59735041 | Msa0032550:intron | 55.0% | |
| CGGCCCCATTTAGTGGGATA+AGG | + | chr1_1:59735028-59735047 | Msa0032550:intron | 55.0% | |
| AGATGTGATGCTTCAGGGGC+GGG | + | chr1_1:59735421-59735440 | Msa0032550:three_prime_UTR | 55.0% | |
| GCCGCTCTTCAATCCCGATC+AGG | + | chr1_1:59732877-59732896 | Msa0032550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59732678 | 59735705 | 59732678 | ID=Msa0032550;Name=Msa0032550 |
| chr1_1 | mRNA | 59732678 | 59735705 | 59732678 | ID=Msa0032550-mRNA-1;Parent=Msa0032550;Name=Msa0032550-mRNA-1;_AED=0.11;_eAED=0.11;_QI=142|0.75|0.6|1|0.75|0.6|5|299|234 |
| chr1_1 | exon | 59732678 | 59732898 | 59732678 | ID=Msa0032550-mRNA-1:exon:18505;Parent=Msa0032550-mRNA-1 |
| chr1_1 | exon | 59733573 | 59733715 | 59733573 | ID=Msa0032550-mRNA-1:exon:18506;Parent=Msa0032550-mRNA-1 |
| chr1_1 | exon | 59733982 | 59734091 | 59733982 | ID=Msa0032550-mRNA-1:exon:18507;Parent=Msa0032550-mRNA-1 |
| chr1_1 | exon | 59734288 | 59734551 | 59734288 | ID=Msa0032550-mRNA-1:exon:18508;Parent=Msa0032550-mRNA-1 |
| chr1_1 | exon | 59735298 | 59735705 | 59735298 | ID=Msa0032550-mRNA-1:exon:18509;Parent=Msa0032550-mRNA-1 |
| chr1_1 | five_prime_UTR | 59732678 | 59732819 | 59732678 | ID=Msa0032550-mRNA-1:five_prime_utr;Parent=Msa0032550-mRNA-1 |
| chr1_1 | CDS | 59732820 | 59732898 | 59732820 | ID=Msa0032550-mRNA-1:cds;Parent=Msa0032550-mRNA-1 |
| chr1_1 | CDS | 59733573 | 59733715 | 59733573 | ID=Msa0032550-mRNA-1:cds;Parent=Msa0032550-mRNA-1 |
| chr1_1 | CDS | 59733982 | 59734091 | 59733982 | ID=Msa0032550-mRNA-1:cds;Parent=Msa0032550-mRNA-1 |
| chr1_1 | CDS | 59734288 | 59734551 | 59734288 | ID=Msa0032550-mRNA-1:cds;Parent=Msa0032550-mRNA-1 |
| chr1_1 | CDS | 59735298 | 59735406 | 59735298 | ID=Msa0032550-mRNA-1:cds;Parent=Msa0032550-mRNA-1 |
| chr1_1 | three_prime_UTR | 59735407 | 59735705 | 59735407 | ID=Msa0032550-mRNA-1:three_prime_utr;Parent=Msa0032550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
