Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035410 | sp|Q8GYE0|PHF1_ARATH | 64.000 | 375 | 130 | 3 | 3 | 373 | 4 | 377 | 5.32e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa0035410 | 0.801182 | 1.015799e-48 | -8.615850e-47 |
| Msa0035410 | Msa0844110 | 0.802122 | 6.517619e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035410 | MtrunA17_Chr1g0197641 | 99.235 | 392 | 3 | 0 | 1 | 392 | 1 | 392 | 0.0 | 803 |
| Msa0035410 | MtrunA17_Chr4g0043971 | 32.424 | 330 | 205 | 8 | 30 | 348 | 72 | 394 | 1.45e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035410 | AT3G52190.1 | 64.000 | 375 | 130 | 3 | 3 | 373 | 4 | 377 | 5.40e-180 | 506 |
| Msa0035410 | AT5G50650.1 | 32.343 | 303 | 190 | 9 | 39 | 335 | 65 | 358 | 4.70e-42 | 152 |
| Msa0035410 | AT5G50550.1 | 32.343 | 303 | 190 | 9 | 39 | 335 | 65 | 358 | 4.70e-42 | 152 |
| Msa0035410 | AT2G01470.1 | 33.673 | 294 | 181 | 9 | 41 | 327 | 76 | 362 | 4.11e-39 | 144 |
Find 129 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAAATTTCTGAGAATT+TGG | 0.127504 | 1_1:-63596355 | Msa0035410:five_prime_UTR |
| GCCTAGCATGCGCATAATTT+TGG | 0.163518 | 1_1:-63594229 | Msa0035410:CDS |
| TCGAGAACTCTGATTCATTC+TGG | 0.214253 | 1_1:-63591495 | Msa0035410:CDS |
| ATGAGTTCATGGAACAAAAT+AGG | 0.245140 | 1_1:-63593479 | Msa0035410:CDS |
| ACATCACAATAATGGCCTTT+TGG | 0.260693 | 1_1:+63591205 | None:intergenic |
| AATCTCAACCTAGTTGTTCT+TGG | 0.269966 | 1_1:-63596266 | Msa0035410:CDS |
| CTCAGCTTCTAACACAAAAT+TGG | 0.284131 | 1_1:+63595305 | None:intergenic |
| AGATAACCTTTCCAATCTTT+AGG | 0.319043 | 1_1:+63592147 | None:intergenic |
| AAATGGTTTGGTTCCATCCT+TGG | 0.329341 | 1_1:+63593674 | None:intergenic |
| GATTTACGACTCAAGACATT+TGG | 0.335448 | 1_1:-63591112 | Msa0035410:three_prime_UTR |
| GTAGACAAAGAAACGGTTAT+AGG | 0.338185 | 1_1:+63596188 | None:intergenic |
| GGATGGACATCTCAGAATTA+TGG | 0.342132 | 1_1:-63594256 | Msa0035410:CDS |
| CTGATGGTTCAGCGAGAATC+TGG | 0.344529 | 1_1:-63593884 | Msa0035410:CDS |
| CTCATCATTGGTTTAAACCT+TGG | 0.350046 | 1_1:+63591439 | None:intergenic |
| CTCAGGGTCCGGTTACTTGC+GGG | 0.357610 | 1_1:-63596310 | Msa0035410:CDS |
| CGGACAGATTTGTGTGCTCT+TGG | 0.361558 | 1_1:+63594201 | None:intergenic |
| CTGTAGAGGGGTTAGTTCCT+TGG | 0.362550 | 1_1:+63594460 | None:intergenic |
| TTCTTTGTCTACTTCCCCTT+TGG | 0.362793 | 1_1:-63596177 | Msa0035410:intron |
| CTGTTTACACATGTAGAATT+AGG | 0.365054 | 1_1:-63591293 | Msa0035410:three_prime_UTR |
| CACTAAAAGTAATACATGTC+TGG | 0.366135 | 1_1:+63594426 | None:intergenic |
| GACCCTCTCTCTTTCCTCTT+CGG | 0.369254 | 1_1:-63596490 | Msa0035410:five_prime_UTR |
| GATTGAGGGTCTCTCATCAT+TGG | 0.378056 | 1_1:+63591427 | None:intergenic |
| CGAGAACTCTGATTCATTCT+GGG | 0.383127 | 1_1:-63591494 | Msa0035410:CDS |
| TCAATTACACATCACAATAA+TGG | 0.384633 | 1_1:+63591197 | None:intergenic |
| TTATTTGGCGCCGTTCAAAA+AGG | 0.387700 | 1_1:-63593651 | Msa0035410:intron |
| ATCCATGACCCGCAAGTAAC+CGG | 0.389128 | 1_1:+63596302 | None:intergenic |
| TGCAGATTGTTTGAGCTCTA+TGG | 0.390492 | 1_1:-63594509 | Msa0035410:intron |
| CTCAATCATTTGATGATCAA+TGG | 0.390908 | 1_1:-63591411 | Msa0035410:CDS |
| TAAGTCTCTTACAGCGGTTT+GGG | 0.391785 | 1_1:-63593504 | Msa0035410:CDS |
| ATTTACGACTCAAGACATTT+GGG | 0.392232 | 1_1:-63591111 | Msa0035410:three_prime_UTR |
| TTACTTGCGGGTCATGGATT+CGG | 0.400800 | 1_1:-63596298 | Msa0035410:CDS |
| TCAATCATTTGATGATCAAT+GGG | 0.405468 | 1_1:-63591410 | Msa0035410:CDS |
| ATAAGTCTCTTACAGCGGTT+TGG | 0.406408 | 1_1:-63593505 | Msa0035410:CDS |
| AACTGAATGTACCTAAAGAT+TGG | 0.410490 | 1_1:-63592158 | Msa0035410:CDS |
| GGTTTAAACCTTGGTCTAGC+TGG | 0.411531 | 1_1:+63591448 | None:intergenic |
| TGAAATATGAATTCAAAGTT+CGG | 0.417229 | 1_1:+63596372 | None:intergenic |
| GGCTGTTATGTAACCTTGGT+TGG | 0.429700 | 1_1:-63591134 | Msa0035410:three_prime_UTR |
| GTCCGGTTACTTGCGGGTCA+TGG | 0.431039 | 1_1:-63596304 | Msa0035410:CDS |
| GGTGTAGTCTCTTGCTATAA+TGG | 0.431141 | 1_1:+63592454 | None:intergenic |
| CGGTTTGGGACATGAGTTCA+TGG | 0.433518 | 1_1:-63593490 | Msa0035410:CDS |
| TGAGTTCATGGAACAAAATA+GGG | 0.435062 | 1_1:-63593478 | Msa0035410:CDS |
| CGCAAGTTGTTGTTGGATAG+TGG | 0.437508 | 1_1:+63596519 | None:intergenic |
| ACACAAATCTGTCCGAGATA+TGG | 0.442309 | 1_1:-63594193 | Msa0035410:CDS |
| CAAGGAACTAACCCCTCTAC+AGG | 0.442807 | 1_1:-63594459 | Msa0035410:CDS |
| ACTTACAACCTCAGTAGAAT+GGG | 0.444696 | 1_1:-63592196 | Msa0035410:CDS |
| CAATGAGCGCAAGTTGTTGT+TGG | 0.445202 | 1_1:+63596512 | None:intergenic |
| GAGAAAATCTGAAGCAAAGC+AGG | 0.450891 | 1_1:+63596218 | None:intergenic |
| TGTAGAGGGGTTAGTTCCTT+GGG | 0.453173 | 1_1:+63594461 | None:intergenic |
| TGCTGGATCACCTCAGGGTC+CGG | 0.464290 | 1_1:-63596321 | Msa0035410:CDS |
| CAAATTTCTGAGAATTTGGA+TGG | 0.465035 | 1_1:-63596351 | Msa0035410:exon |
| TAGACAAAGAAACGGTTATA+GGG | 0.466115 | 1_1:+63596189 | None:intergenic |
| GAATGATGCTGGATCACCTC+AGG | 0.466193 | 1_1:-63596327 | Msa0035410:CDS |
| TACTTACAACCTCAGTAGAA+TGG | 0.468911 | 1_1:-63592197 | Msa0035410:CDS |
| GGGTGCACAGCAATAGCAAC+CGG | 0.474667 | 1_1:+63595273 | None:intergenic |
| CAAATTGTTTCTTGAACTTG+AGG | 0.485492 | 1_1:-63591155 | Msa0035410:three_prime_UTR |
| TTCATTCTGGGGATTTCCAA+TGG | 0.490439 | 1_1:-63591482 | Msa0035410:CDS |
| CTCAGTAGAATGGGGAGCAT+TGG | 0.494832 | 1_1:-63592187 | Msa0035410:CDS |
| CTAACCCCTCTACAGGGTAT+TGG | 0.495022 | 1_1:-63594452 | Msa0035410:CDS |
| ATATAGGTTCTTACAGAGAA+AGG | 0.496610 | 1_1:+63593396 | None:intergenic |
| CATTGATCATCAAATGATTG+AGG | 0.497207 | 1_1:+63591412 | None:intergenic |
| CCTCAGGGTCCGGTTACTTG+CGG | 0.499353 | 1_1:-63596311 | Msa0035410:CDS |
| AGGACAAGAATTTCCACGCT+TGG | 0.506092 | 1_1:+63596238 | None:intergenic |
| TCATTCTGGGGATTTCCAAT+GGG | 0.509589 | 1_1:-63591481 | Msa0035410:CDS |
| TAAACCTTGGTCTAGCTGGT+TGG | 0.510557 | 1_1:+63591452 | None:intergenic |
| CTAGCTTCAACTTCTACTGA+TGG | 0.515435 | 1_1:-63593900 | Msa0035410:CDS |
| TTGAGGCTGTTATGTAACCT+TGG | 0.517016 | 1_1:-63591138 | Msa0035410:three_prime_UTR |
| ATTGATCATCAAATGATTGA+GGG | 0.517917 | 1_1:+63591413 | None:intergenic |
| TGCAGAGTGGCAGATATACT+TGG | 0.519271 | 1_1:-63591566 | Msa0035410:intron |
| CGGCACAACTATCGCAACAT+TGG | 0.521026 | 1_1:-63592430 | Msa0035410:CDS |
| TCCAAAATTATGCGCATGCT+AGG | 0.524567 | 1_1:+63594228 | None:intergenic |
| ACTAAAAGTAATACATGTCT+GGG | 0.525288 | 1_1:+63594427 | None:intergenic |
| GATCTAAATTTGCTGCTGGC+GGG | 0.525909 | 1_1:-63594397 | Msa0035410:CDS |
| TAATGGCTGTTAGCCACGAC+GGG | 0.528220 | 1_1:-63593424 | Msa0035410:CDS |
| AGAAGCTGAGGAAGGTGATC+CGG | 0.530482 | 1_1:-63595292 | Msa0035410:CDS |
| GATGGATCTAAATTTGCTGC+TGG | 0.530659 | 1_1:-63594401 | Msa0035410:CDS |
| TGTACCTAAAATCCATATCT+CGG | 0.531997 | 1_1:+63594181 | None:intergenic |
| TGGATTTCTGTCCTAGTGAA+AGG | 0.533688 | 1_1:-63592410 | Msa0035410:intron |
| TCAACCTAGTTGTTCTTGGA+AGG | 0.537175 | 1_1:-63596262 | Msa0035410:CDS |
| GTAGTATCAGTAGTTGTAAG+TGG | 0.537262 | 1_1:-63591340 | Msa0035410:three_prime_UTR |
| ACTACTGATACTACTTCCAA+TGG | 0.538599 | 1_1:+63591349 | None:intergenic |
| AGACGCGGTCACATATCTAC+TGG | 0.544878 | 1_1:+63591385 | None:intergenic |
| ATTTGGATGGAGAATGATGC+TGG | 0.544930 | 1_1:-63596338 | Msa0035410:exon |
| TTTATGTGCTCTTTGAGTAA+TGG | 0.546213 | 1_1:-63595237 | Msa0035410:CDS |
| TCTATGTGTTGTTGTTCCAT+TGG | 0.546479 | 1_1:-63591365 | Msa0035410:three_prime_UTR |
| GAGAACTCTGATTCATTCTG+GGG | 0.547394 | 1_1:-63591493 | Msa0035410:CDS |
| TGGACCTTCCAAGAACAACT+AGG | 0.547578 | 1_1:+63596258 | None:intergenic |
| GGATCTAAATTTGCTGCTGG+CGG | 0.553797 | 1_1:-63594398 | Msa0035410:CDS |
| TAGAAAGTCTGCTTCAGTAA+TGG | 0.572648 | 1_1:-63593441 | Msa0035410:CDS |
| GGAACAAAATAGGGCACAAG+AGG | 0.574914 | 1_1:-63593469 | Msa0035410:CDS |
| AGAAACGGTTATAGGGTCAA+AGG | 0.575993 | 1_1:+63596196 | None:intergenic |
| GTGGTATCAAAATTCAACTC+AGG | 0.578946 | 1_1:-63591321 | Msa0035410:three_prime_UTR |
| CACATAAAATCATCACCGCT+AGG | 0.583548 | 1_1:+63595252 | None:intergenic |
| GACCACTCTGTCTCGCAACT+CGG | 0.583764 | 1_1:-63593838 | Msa0035410:intron |
| GACATCTCAGAATTATGGAA+TGG | 0.584289 | 1_1:-63594251 | Msa0035410:CDS |
| TAAATTTGCTGCTGGCGGGT+CGG | 0.584673 | 1_1:-63594393 | Msa0035410:intron |
| GTGGATATTTACCTTTCACT+AGG | 0.590688 | 1_1:+63592399 | None:intergenic |
| ATCCGAAGAGGAAAGAGAGA+GGG | 0.593233 | 1_1:+63596488 | None:intergenic |
| GGGAACCAATACCCTGTAGA+GGG | 0.595092 | 1_1:+63594447 | None:intergenic |
| AGGGGATAAGTCTCTTACAG+CGG | 0.605985 | 1_1:-63593510 | Msa0035410:CDS |
| TTGCGAGACAGAGTGGTCAC+AGG | 0.610478 | 1_1:+63593843 | None:intergenic |
| AGGGGAAGTAGACAAAGAAA+CGG | 0.613448 | 1_1:+63596181 | None:intergenic |
| AATGTACCTAAAGATTGGAA+AGG | 0.615590 | 1_1:-63592153 | Msa0035410:intron |
| ACATAAAATCATCACCGCTA+GGG | 0.616388 | 1_1:+63595253 | None:intergenic |
| TATCCGAAGAGGAAAGAGAG+AGG | 0.616703 | 1_1:+63596487 | None:intergenic |
| TTATATAGAAATATCCGAAG+AGG | 0.619452 | 1_1:+63596476 | None:intergenic |
| TGGGAACCAATACCCTGTAG+AGG | 0.620085 | 1_1:+63594446 | None:intergenic |
| TTTGTGTTAGAAGCTGAGGA+AGG | 0.624346 | 1_1:-63595300 | Msa0035410:CDS |
| GTAATGGCTGTTAGCCACGA+CGG | 0.630145 | 1_1:-63593425 | Msa0035410:CDS |
| TTTACGACTCAAGACATTTG+GGG | 0.637607 | 1_1:-63591110 | Msa0035410:three_prime_UTR |
| AAACATGAAACTGTTACCCA+AGG | 0.640209 | 1_1:-63594477 | Msa0035410:CDS |
| AGAATCTGGAAGGTTGAAGA+CGG | 0.646935 | 1_1:-63593870 | Msa0035410:CDS |
| GAGAAAGGTATTTCCCGTCG+TGG | 0.646943 | 1_1:+63593411 | None:intergenic |
| GTTCTTGGAAGGTCCAAGCG+TGG | 0.648572 | 1_1:-63596251 | Msa0035410:CDS |
| CAATGCTCCCCATTCTACTG+AGG | 0.662088 | 1_1:+63592188 | None:intergenic |
| TGGTTCAGCGAGAATCTGGA+AGG | 0.668492 | 1_1:-63593880 | Msa0035410:CDS |
| AAGGAACTAACCCCTCTACA+GGG | 0.669728 | 1_1:-63594458 | Msa0035410:CDS |
| TACCGAGTTGCGAGACAGAG+TGG | 0.677017 | 1_1:+63593836 | None:intergenic |
| AAAACCAACCAGCTAGACCA+AGG | 0.678469 | 1_1:-63591456 | Msa0035410:CDS |
| TTGAGTCGTAAATCCAACCA+AGG | 0.681163 | 1_1:+63591121 | None:intergenic |
| AATGATGCTGGATCACCTCA+GGG | 0.681405 | 1_1:-63596326 | Msa0035410:CDS |
| CCGCAAGTAACCGGACCCTG+AGG | 0.684658 | 1_1:+63596311 | None:intergenic |
| GGAACCAATACCCTGTAGAG+GGG | 0.704785 | 1_1:+63594448 | None:intergenic |
| GCTATTGCTGTGCACCCTAG+CGG | 0.708254 | 1_1:-63595267 | Msa0035410:CDS |
| CAATCATTTGATGATCAATG+GGG | 0.709097 | 1_1:-63591409 | Msa0035410:CDS |
| CTTACAACCTCAGTAGAATG+GGG | 0.712274 | 1_1:-63592195 | Msa0035410:CDS |
| ATTGAAGAGGAATACCAAAG+GGG | 0.723778 | 1_1:+63596163 | None:intergenic |
| ATGTTGCGATAGTTGTGCCG+AGG | 0.730874 | 1_1:+63592433 | None:intergenic |
| GGAACAACAACACATAGACG+CGG | 0.758487 | 1_1:+63591370 | None:intergenic |
| TATAGCAAGAGACTACACCT+CGG | 0.773915 | 1_1:-63592450 | Msa0035410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTAAACTTAAAATAAAAA+GGG | + | chr1_1:63591571-63591590 | None:intergenic | 10.0% |
| !! | TTTCTAAACTTAAAATAAAA+AGG | + | chr1_1:63591572-63591591 | None:intergenic | 10.0% |
| !! | TATAAGTATTTATGCTATAA+GGG | + | chr1_1:63591679-63591698 | None:intergenic | 15.0% |
| !! | ATATAAGTATTTATGCTATA+AGG | + | chr1_1:63591680-63591699 | None:intergenic | 15.0% |
| !!! | TTTTTTCAAAAATGATATTG+AGG | - | chr1_1:63592859-63592878 | Msa0035410:intron | 15.0% |
| !!! | TTTTTCAAAAATGATATTGA+GGG | - | chr1_1:63592860-63592879 | Msa0035410:intron | 15.0% |
| !! | ATTATTTATTAGAATTCTAC+TGG | + | chr1_1:63593532-63593551 | None:intergenic | 15.0% |
| !!! | TTTATGTGTGTTTTTTAAAA+AGG | - | chr1_1:63594609-63594628 | Msa0035410:intron | 15.0% |
| !! | TTTCATGAAATATTTGATAA+AGG | - | chr1_1:63594663-63594682 | Msa0035410:intron | 15.0% |
| !!! | ATTAGTCCAATTATTTTAAA+AGG | - | chr1_1:63595032-63595051 | Msa0035410:intron | 15.0% |
| !!! | AGTTTACCTTTTAAAATAAT+TGG | + | chr1_1:63595041-63595060 | None:intergenic | 15.0% |
| !! | ATGATTGATATTAATCAAAA+AGG | + | chr1_1:63595266-63595285 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGTTATATTCTA+TGG | + | chr1_1:63595568-63595587 | None:intergenic | 15.0% |
| !!! | ATTAATGATGTTTAAAATTG+TGG | - | chr1_1:63595840-63595859 | Msa0035410:intron | 15.0% |
| !! | TGAAATATGAATTCAAAGTT+CGG | + | chr1_1:63591263-63591282 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTTCTGAGAATT+TGG | - | chr1_1:63591277-63591296 | Msa0035410:three_prime_UTR | 20.0% |
| !!! | TAAACTTTTGTGAGATTATT+AGG | + | chr1_1:63591954-63591973 | None:intergenic | 20.0% |
| !! | TAAACATTCATGAGATTATT+AGG | + | chr1_1:63592044-63592063 | None:intergenic | 20.0% |
| !!! | ATTGTCCTTTAAAAAGTTAA+AGG | + | chr1_1:63592582-63592601 | None:intergenic | 20.0% |
| !! | AAAAACTGTGCAAAAAAATT+TGG | + | chr1_1:63592628-63592647 | None:intergenic | 20.0% |
| !! | CAAATTGAATTTGAATTGTT+TGG | - | chr1_1:63592766-63592785 | Msa0035410:intron | 20.0% |
| !! | ACAACATAAAAACAATTTGT+TGG | + | chr1_1:63593283-63593302 | None:intergenic | 20.0% |
| !!! | GGTATAGTCTTTTTTATTTA+AGG | - | chr1_1:63593815-63593834 | Msa0035410:intron | 20.0% |
| !!! | AAAAGGAAATTTTGGATAAA+GGG | + | chr1_1:63593899-63593918 | None:intergenic | 20.0% |
| !!! | AAAAAGGAAATTTTGGATAA+AGG | + | chr1_1:63593900-63593919 | None:intergenic | 20.0% |
| !! | TTAAGCATATTTAAGTCATT+TGG | - | chr1_1:63594285-63594304 | Msa0035410:intron | 20.0% |
| !! | AAGTGTTTAAGAAAATGATT+TGG | + | chr1_1:63594412-63594431 | None:intergenic | 20.0% |
| !! | AATTAGAAATTAGCATCATA+AGG | + | chr1_1:63594444-63594463 | None:intergenic | 20.0% |
| !!! | TATCACATTTGTGTTTTTAA+GGG | - | chr1_1:63594496-63594515 | Msa0035410:CDS | 20.0% |
| !! | TAAAAGTTTAAAAAATGCAG+TGG | - | chr1_1:63595326-63595345 | Msa0035410:intron | 20.0% |
| !!! | AGCTTTTATTATTTTATGCA+GGG | - | chr1_1:63595409-63595428 | Msa0035410:intron | 20.0% |
| !! | AACAAAAATCAACATCAATT+CGG | - | chr1_1:63595606-63595625 | Msa0035410:intron | 20.0% |
| !! | TGGTTAATGAATATATAACA+AGG | + | chr1_1:63595902-63595921 | None:intergenic | 20.0% |
| !! | AACAAATTTCGAAAACAATA+TGG | + | chr1_1:63595967-63595986 | None:intergenic | 20.0% |
| !!! | AAATTTTCAGCAAAAAGAAA+AGG | + | chr1_1:63596402-63596421 | None:intergenic | 20.0% |
| ! | TTATATAGAAATATCCGAAG+AGG | + | chr1_1:63591159-63591178 | None:intergenic | 25.0% |
| ! | ATATAGTTTGAGAATTGAAG+AGG | + | chr1_1:63591485-63591504 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr1_1:63591651-63591670 | None:intergenic | 25.0% |
| ! | TAAGCATTTGTGAGATTATT+AGG | + | chr1_1:63591838-63591857 | None:intergenic | 25.0% |
| ! | TATTTAAGCTATAAGCTGTA+AGG | - | chr1_1:63591980-63591999 | Msa0035410:intron | 25.0% |
| ! | TCATGAATGTTTATACAAGT+AGG | - | chr1_1:63592051-63592070 | Msa0035410:intron | 25.0% |
| !!! | TGGTTTTAATCTTGAGTTTT+TGG | - | chr1_1:63592237-63592256 | Msa0035410:intron | 25.0% |
| ! | ATTATTCATAAAAGAGAGCA+AGG | + | chr1_1:63592464-63592483 | None:intergenic | 25.0% |
| !!! | CTGTTCCTTTAACTTTTTAA+AGG | - | chr1_1:63592574-63592593 | Msa0035410:intron | 25.0% |
| !! | GTGTATGACATAATAGTTTT+AGG | - | chr1_1:63592674-63592693 | Msa0035410:intron | 25.0% |
| !!! | GTCATTTTATATTTGTCAGT+TGG | + | chr1_1:63592809-63592828 | None:intergenic | 25.0% |
| ! | CTACTCTTAAGAAATAAGTA+CGG | + | chr1_1:63593046-63593065 | None:intergenic | 25.0% |
| ! | ACTAAAAGTAATACATGTCT+GGG | + | chr1_1:63593208-63593227 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTAGTGTTGA+TGG | - | chr1_1:63593213-63593232 | Msa0035410:intron | 25.0% |
| !!! | AATTGTTTTTATGTTGTGTG+TGG | - | chr1_1:63593286-63593305 | Msa0035410:intron | 25.0% |
| !!! | CTTTTTTATTTAAGGACCTT+TGG | - | chr1_1:63593823-63593842 | Msa0035410:intron | 25.0% |
| !! | AAAGGAAATTTTGGATAAAG+GGG | + | chr1_1:63593898-63593917 | None:intergenic | 25.0% |
| !! | AAGAGACAAAAAGGAAATTT+TGG | + | chr1_1:63593907-63593926 | None:intergenic | 25.0% |
| !! | AATTTCCTTTTTGTCTCTTT+AGG | - | chr1_1:63593908-63593927 | Msa0035410:CDS | 25.0% |
| ! | TCAAGTATGAACTTAATCAT+TGG | - | chr1_1:63594082-63594101 | Msa0035410:intron | 25.0% |
| ! | GATATGTACAAGGTAAATAT+AGG | + | chr1_1:63594255-63594274 | None:intergenic | 25.0% |
| ! | CAAAACAATTGATATGTACA+AGG | + | chr1_1:63594265-63594284 | None:intergenic | 25.0% |
| !!! | AAAATGATTTGGTAATCTCT+AGG | + | chr1_1:63594401-63594420 | None:intergenic | 25.0% |
| !!! | GTATCACATTTGTGTTTTTA+AGG | - | chr1_1:63594495-63594514 | Msa0035410:CDS | 25.0% |
| ! | AAAACTGTAATTGTAAGGAA+AGG | + | chr1_1:63594546-63594565 | None:intergenic | 25.0% |
| !! | TTTCCTTACAATTACAGTTT+TGG | - | chr1_1:63594545-63594564 | Msa0035410:intron | 25.0% |
| ! | ATTCCAAAACTGTAATTGTA+AGG | + | chr1_1:63594551-63594570 | None:intergenic | 25.0% |
| !!! | GAGAAAGTTATAGCTATTTT+AGG | - | chr1_1:63594639-63594658 | Msa0035410:intron | 25.0% |
| !! | TGGATTTGAACAAATACTTT+TGG | - | chr1_1:63594775-63594794 | Msa0035410:intron | 25.0% |
| !!! | AGTCTGTTTTTAAAATTTGC+CGG | - | chr1_1:63594921-63594940 | Msa0035410:intron | 25.0% |
| !!! | ATAGGTTTTGGATATATTAG+TGG | - | chr1_1:63594985-63595004 | Msa0035410:intron | 25.0% |
| !! | ATCGGATTTCTGTAATTTTA+GGG | - | chr1_1:63595103-63595122 | Msa0035410:intron | 25.0% |
| !!! | GAGCTTTTATTATTTTATGC+AGG | - | chr1_1:63595408-63595427 | Msa0035410:intron | 25.0% |
| !! | ACAATTGTGAATGTGTTTTA+TGG | + | chr1_1:63595534-63595553 | None:intergenic | 25.0% |
| ! | AATGGTTAATGAATATGACA+TGG | - | chr1_1:63595675-63595694 | Msa0035410:intron | 25.0% |
| ! | TGTTTATTTAACACAAACTG+TGG | + | chr1_1:63595806-63595825 | None:intergenic | 25.0% |
| ! | TTGTGGTTAATTACATTTAG+AGG | - | chr1_1:63595857-63595876 | Msa0035410:intron | 25.0% |
| ! | TTTAGAGGATGATTAATGAT+TGG | - | chr1_1:63595872-63595891 | Msa0035410:intron | 25.0% |
| ! | AATTTCGAAAACAATATGGA+TGG | + | chr1_1:63595963-63595982 | None:intergenic | 25.0% |
| ! | ATTGATCATCAAATGATTGA+GGG | + | chr1_1:63596222-63596241 | None:intergenic | 25.0% |
| !! | TCAATCATTTGATGATCAAT+GGG | - | chr1_1:63596222-63596241 | Msa0035410:CDS | 25.0% |
| !! | CTGAAAATTTTAAACCCAAA+AGG | - | chr1_1:63596412-63596431 | Msa0035410:five_prime_UTR | 25.0% |
| ! | TCAATTACACATCACAATAA+TGG | + | chr1_1:63596438-63596457 | None:intergenic | 25.0% |
| ! | CAAATTTCTGAGAATTTGGA+TGG | - | chr1_1:63591281-63591300 | Msa0035410:three_prime_UTR | 30.0% |
| !! | AACAACTAGGTTGAGATTTT+CGG | + | chr1_1:63591364-63591383 | None:intergenic | 30.0% |
| TAGACAAAGAAACGGTTATA+GGG | + | chr1_1:63591446-63591465 | None:intergenic | 30.0% | |
| AATTGAAGAGGAATACCAAA+GGG | + | chr1_1:63591473-63591492 | None:intergenic | 30.0% | |
| TATGCCTGTATATAACCTAT+AGG | - | chr1_1:63591856-63591875 | Msa0035410:intron | 30.0% | |
| !! | TTATTTTGTGCATTCCCTTT+TGG | - | chr1_1:63592134-63592153 | Msa0035410:intron | 30.0% |
| TTTCTCAGCTAAAACCAAAA+GGG | + | chr1_1:63592151-63592170 | None:intergenic | 30.0% | |
| ATTTCTCAGCTAAAACCAAA+AGG | + | chr1_1:63592152-63592171 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGAACAAGATTGT+TGG | - | chr1_1:63592175-63592194 | Msa0035410:CDS | 30.0% |
| !! | ATAATTCTGCTTTTGAAGAG+TGG | - | chr1_1:63592217-63592236 | Msa0035410:intron | 30.0% |
| !! | GAGTTTTTGGATCATGTAAT+TGG | - | chr1_1:63592250-63592269 | Msa0035410:intron | 30.0% |
| TTTATGTGCTCTTTGAGTAA+TGG | - | chr1_1:63592395-63592414 | Msa0035410:intron | 30.0% | |
| AAAGCTACTACTTTCAGTAA+CGG | - | chr1_1:63592540-63592559 | Msa0035410:intron | 30.0% | |
| GTTAAAGGAACAGAAAATGT+TGG | + | chr1_1:63592567-63592586 | None:intergenic | 30.0% | |
| !!! | TAATAGTTTTAGGCTCAGTT+TGG | - | chr1_1:63592684-63592703 | Msa0035410:intron | 30.0% |
| TGAAGTAGAACTGTTAGTAA+CGG | + | chr1_1:63592971-63592990 | None:intergenic | 30.0% | |
| GCTTATATGTTATAAGCTAG+CGG | - | chr1_1:63593000-63593019 | Msa0035410:intron | 30.0% | |
| CACTAAAAGTAATACATGTC+TGG | + | chr1_1:63593209-63593228 | None:intergenic | 30.0% | |
| TGTACCTAAAATCCATATCT+CGG | + | chr1_1:63593454-63593473 | None:intergenic | 30.0% | |
| AGATGAATGTATCTCTTAGA+AGG | + | chr1_1:63593503-63593522 | None:intergenic | 30.0% | |
| TGACAAAACGAAAGACAATA+CGG | + | chr1_1:63593688-63593707 | None:intergenic | 30.0% | |
| TTTATTTAAGGACCTTTGGA+AGG | - | chr1_1:63593827-63593846 | Msa0035410:intron | 30.0% | |
| TTCATCCTAAAGAGACAAAA+AGG | + | chr1_1:63593916-63593935 | None:intergenic | 30.0% | |
| !!! | TGAATTATGTCGATTTTCCA+AGG | - | chr1_1:63593941-63593960 | Msa0035410:intron | 30.0% |
| !! | GGAACCAAACCATTTTTATT+TGG | - | chr1_1:63593966-63593985 | Msa0035410:intron | 30.0% |
| ! | GATACTCATACCTTTTTGAA+CGG | + | chr1_1:63593994-63594013 | None:intergenic | 30.0% |
| !!! | TGGTACCTCTAATTTTGATT+AGG | - | chr1_1:63594102-63594121 | Msa0035410:intron | 30.0% |
| !!! | GGTACCTCTAATTTTGATTA+GGG | - | chr1_1:63594103-63594122 | Msa0035410:intron | 30.0% |
| !!! | GTACCTCTAATTTTGATTAG+GGG | - | chr1_1:63594104-63594123 | Msa0035410:intron | 30.0% |
| TATCCCCTAATCAAAATTAG+AGG | + | chr1_1:63594110-63594129 | None:intergenic | 30.0% | |
| ATGAGTTCATGGAACAAAAT+AGG | - | chr1_1:63594153-63594172 | Msa0035410:intron | 30.0% | |
| TGAGTTCATGGAACAAAATA+GGG | - | chr1_1:63594154-63594173 | Msa0035410:intron | 30.0% | |
| ATATAGGTTCTTACAGAGAA+AGG | + | chr1_1:63594239-63594258 | None:intergenic | 30.0% | |
| TTTAAGTCATTTGGATAGCA+AGG | - | chr1_1:63594294-63594313 | Msa0035410:intron | 30.0% | |
| TGATCATGATTAAGTCATCT+AGG | - | chr1_1:63594374-63594393 | Msa0035410:intron | 30.0% | |
| ! | TATACAATTTGCTTTCCTAG+CGG | - | chr1_1:63594471-63594490 | Msa0035410:CDS | 30.0% |
| !!! | TTTTTTTAAAAGCTCGTCCT+TGG | + | chr1_1:63594579-63594598 | None:intergenic | 30.0% |
| TTTGTCATATCTCAGAACTA+AGG | - | chr1_1:63594724-63594743 | Msa0035410:intron | 30.0% | |
| TTGACTATAACGATTCTGAA+AGG | + | chr1_1:63594964-63594983 | None:intergenic | 30.0% | |
| AGAATCGTTATAGTCAACAT+AGG | - | chr1_1:63594967-63594986 | Msa0035410:intron | 30.0% | |
| ! | GTTATAGTCAACATAGGTTT+TGG | - | chr1_1:63594973-63594992 | Msa0035410:intron | 30.0% |
| ! | CTAATTTTATCTGTGATGCA+CGG | + | chr1_1:63595017-63595036 | None:intergenic | 30.0% |
| TTGTATATTCTTGAGCTCAT+CGG | - | chr1_1:63595085-63595104 | Msa0035410:intron | 30.0% | |
| ! | CATCGGATTTCTGTAATTTT+AGG | - | chr1_1:63595102-63595121 | Msa0035410:intron | 30.0% |
| !!! | AATTTTAGGGCAAGTAAAGA+TGG | - | chr1_1:63595116-63595135 | Msa0035410:intron | 30.0% |
| ! | ATCATTCATGAACACACTTT+TGG | - | chr1_1:63595281-63595300 | Msa0035410:CDS | 30.0% |
| ! | TCATTCATGAACACACTTTT+GGG | - | chr1_1:63595282-63595301 | Msa0035410:CDS | 30.0% |
| GGCCTAAAATTTCAATCTAT+TGG | - | chr1_1:63595347-63595366 | Msa0035410:intron | 30.0% | |
| ! | GGCCAATAGATTGAAATTTT+AGG | + | chr1_1:63595352-63595371 | None:intergenic | 30.0% |
| AACTGAATGTACCTAAAGAT+TGG | - | chr1_1:63595474-63595493 | Msa0035410:intron | 30.0% | |
| AATGTACCTAAAGATTGGAA+AGG | - | chr1_1:63595479-63595498 | Msa0035410:intron | 30.0% | |
| AGATAACCTTTCCAATCTTT+AGG | + | chr1_1:63595488-63595507 | None:intergenic | 30.0% | |
| TATATTCTATGGTCTCAGAA+AGG | + | chr1_1:63595557-63595576 | None:intergenic | 30.0% | |
| AAAATCAACATCAATTCGGA+TGG | - | chr1_1:63595610-63595629 | Msa0035410:intron | 30.0% | |
| ACTTATTAACTGTCCATTGA+AGG | - | chr1_1:63595705-63595724 | Msa0035410:intron | 30.0% | |
| TTAACACAAACTGTGGTTAA+TGG | + | chr1_1:63595799-63595818 | None:intergenic | 30.0% | |
| CATTGATCATCAAATGATTG+AGG | + | chr1_1:63596223-63596242 | None:intergenic | 30.0% | |
| ! | CTCAATCATTTGATGATCAA+TGG | - | chr1_1:63596221-63596240 | Msa0035410:CDS | 30.0% |
| ! | CAATCATTTGATGATCAATG+GGG | - | chr1_1:63596223-63596242 | Msa0035410:CDS | 30.0% |
| CTGTTTACACATGTAGAATT+AGG | - | chr1_1:63596339-63596358 | Msa0035410:exon | 30.0% | |
| ! | CAAATTGTTTCTTGAACTTG+AGG | - | chr1_1:63596477-63596496 | Msa0035410:five_prime_UTR | 30.0% |
| ATTTACGACTCAAGACATTT+GGG | - | chr1_1:63596521-63596540 | Msa0035410:five_prime_UTR | 30.0% | |
| ! | TTGATTTTCAGTGACCCAAT+TGG | - | chr1_1:63591229-63591248 | Msa0035410:three_prime_UTR | 35.0% |
| ! | GTTCGGTTCTTTTTCCAATT+GGG | + | chr1_1:63591246-63591265 | None:intergenic | 35.0% |
| ! | AGTTCGGTTCTTTTTCCAAT+TGG | + | chr1_1:63591247-63591266 | None:intergenic | 35.0% |
| !! | ACAACTAGGTTGAGATTTTC+GGG | + | chr1_1:63591363-63591382 | None:intergenic | 35.0% |
| AATCTCAACCTAGTTGTTCT+TGG | - | chr1_1:63591366-63591385 | Msa0035410:three_prime_UTR | 35.0% | |
| GTAGACAAAGAAACGGTTAT+AGG | + | chr1_1:63591447-63591466 | None:intergenic | 35.0% | |
| ATTGAAGAGGAATACCAAAG+GGG | + | chr1_1:63591472-63591491 | None:intergenic | 35.0% | |
| GAATTGAAGAGGAATACCAA+AGG | + | chr1_1:63591474-63591493 | None:intergenic | 35.0% | |
| TTGCAGTTGTATACAGACTA+TGG | - | chr1_1:63591625-63591644 | Msa0035410:intron | 35.0% | |
| ACAGTTTATGAACATGCCAT+AGG | - | chr1_1:63591808-63591827 | Msa0035410:intron | 35.0% | |
| ACAGCCTATAGGTTATATAC+AGG | + | chr1_1:63591863-63591882 | None:intergenic | 35.0% | |
| TAGCTTATGATACAGCCTAT+AGG | + | chr1_1:63591874-63591893 | None:intergenic | 35.0% | |
| ! | CTATAAGCTGTAAGGTATTC+TGG | - | chr1_1:63591988-63592007 | Msa0035410:intron | 35.0% |
| ! | TGTTTGGATCGACTTATTTC+AGG | + | chr1_1:63592080-63592099 | None:intergenic | 35.0% |
| TGAAATAAGTCGATCCAAAC+AGG | - | chr1_1:63592079-63592098 | Msa0035410:intron | 35.0% | |
| CTCAGCTTCTAACACAAAAT+TGG | + | chr1_1:63592330-63592349 | None:intergenic | 35.0% | |
| ! | CAATTTTGTGTTAGAAGCTG+AGG | - | chr1_1:63592328-63592347 | Msa0035410:intron | 35.0% |
| ACATAAAATCATCACCGCTA+GGG | + | chr1_1:63592382-63592401 | None:intergenic | 35.0% | |
| ! | AGCTTCTTTTCTAATAGCCA+TGG | - | chr1_1:63592430-63592449 | Msa0035410:CDS | 35.0% |
| ! | GCTTCTTTTCTAATAGCCAT+GGG | - | chr1_1:63592431-63592450 | Msa0035410:CDS | 35.0% |
| ! | TGTTCTTATTTCCTTGAGCT+AGG | - | chr1_1:63592648-63592667 | Msa0035410:intron | 35.0% |
| TATGTTATAAGCTAGCGGTT+TGG | - | chr1_1:63593005-63593024 | Msa0035410:intron | 35.0% | |
| ! | ATATTTTGCCTCGAGTTCTA+TGG | - | chr1_1:63593073-63593092 | Msa0035410:intron | 35.0% |
| AATCTAAACCATAGAACTCG+AGG | + | chr1_1:63593084-63593103 | None:intergenic | 35.0% | |
| AAACATGAAACTGTTACCCA+AGG | - | chr1_1:63593155-63593174 | Msa0035410:intron | 35.0% | |
| ! | TACAGGACACAATTCTAAAG+AGG | + | chr1_1:63593328-63593347 | None:intergenic | 35.0% |
| AAGACAGAAGTCAAACATAC+AGG | + | chr1_1:63593345-63593364 | None:intergenic | 35.0% | |
| GACATCTCAGAATTATGGAA+TGG | - | chr1_1:63593381-63593400 | Msa0035410:intron | 35.0% | |
| TAGTCTAATTATTGCAGGCA+CGG | + | chr1_1:63593580-63593599 | None:intergenic | 35.0% | |
| TGCCTGCAATAATTAGACTA+TGG | - | chr1_1:63593580-63593599 | Msa0035410:intron | 35.0% | |
| CTCCATAGTCTAATTATTGC+AGG | + | chr1_1:63593585-63593604 | None:intergenic | 35.0% | |
| CAATGTCATCAAAGTTTCAC+AGG | + | chr1_1:63593658-63593677 | None:intergenic | 35.0% | |
| AATTCTTCAGATCCTTCCAA+AGG | + | chr1_1:63593842-63593861 | None:intergenic | 35.0% | |
| !!! | TTATGTCGATTTTCCAAGGA+TGG | - | chr1_1:63593945-63593964 | Msa0035410:intron | 35.0% |
| TAGAAAGTCTGCTTCAGTAA+TGG | - | chr1_1:63594191-63594210 | Msa0035410:CDS | 35.0% | |
| ! | ATACAATTTGCTTTCCTAGC+GGG | - | chr1_1:63594472-63594491 | Msa0035410:CDS | 35.0% |
| !!! | CAGTTTTGGAATTGTTTCCA+AGG | - | chr1_1:63594559-63594578 | Msa0035410:intron | 35.0% |
| AGATATGACAAACATGGCAT+TGG | + | chr1_1:63594716-63594735 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATATGACAAACA+TGG | + | chr1_1:63594722-63594741 | None:intergenic | 35.0% |
| ! | AGAACTAAGGCTTCTCTTTT+GGG | - | chr1_1:63594737-63594756 | Msa0035410:intron | 35.0% |
| TTGGGCTGTTCAATTTGATA+TGG | - | chr1_1:63594755-63594774 | Msa0035410:intron | 35.0% | |
| AGCTCAAGAATATACAAGCA+AGG | + | chr1_1:63595082-63595101 | None:intergenic | 35.0% | |
| GTGGATATTTACCTTTCACT+AGG | + | chr1_1:63595236-63595255 | None:intergenic | 35.0% | |
| TGAAAGGTAAATATCCACAC+TGG | - | chr1_1:63595238-63595257 | Msa0035410:CDS | 35.0% | |
| !! | TAATCAAAAAGGTACCAGTG+TGG | + | chr1_1:63595255-63595274 | None:intergenic | 35.0% |
| ! | CATTCATGAACACACTTTTG+GGG | - | chr1_1:63595283-63595302 | Msa0035410:CDS | 35.0% |
| ! | ACCAAGAGAACTGGTTTATT+AGG | + | chr1_1:63595373-63595392 | None:intergenic | 35.0% |
| TACTTACAACCTCAGTAGAA+TGG | - | chr1_1:63595435-63595454 | Msa0035410:intron | 35.0% | |
| ACTTACAACCTCAGTAGAAT+GGG | - | chr1_1:63595436-63595455 | Msa0035410:intron | 35.0% | |
| GCTAATGTCGTTCAAATATG+TGG | - | chr1_1:63595636-63595655 | Msa0035410:intron | 35.0% | |
| TCGTGTTTAATCACCTTCAA+TGG | + | chr1_1:63595721-63595740 | None:intergenic | 35.0% | |
| !! | TTATTTTATCACGTGACGTG+AGG | + | chr1_1:63595767-63595786 | None:intergenic | 35.0% |
| ! | ATGTGGTTAGTTACGTTTCA+TGG | + | chr1_1:63595926-63595945 | None:intergenic | 35.0% |
| TCGAAAACAATATGGATGGT+TGG | + | chr1_1:63595959-63595978 | None:intergenic | 35.0% | |
| !!! | CAGATATACTTGGTGCTTTT+AGG | - | chr1_1:63596076-63596095 | Msa0035410:intron | 35.0% |
| !! | CTCATCATTGGTTTAAACCT+TGG | + | chr1_1:63596196-63596215 | None:intergenic | 35.0% |
| ! | TCTATGTGTTGTTGTTCCAT+TGG | - | chr1_1:63596267-63596286 | Msa0035410:CDS | 35.0% |
| ACTACTGATACTACTTCCAA+TGG | + | chr1_1:63596286-63596305 | None:intergenic | 35.0% | |
| GTAGTATCAGTAGTTGTAAG+TGG | - | chr1_1:63596292-63596311 | Msa0035410:CDS | 35.0% | |
| GTGGTATCAAAATTCAACTC+AGG | - | chr1_1:63596311-63596330 | Msa0035410:CDS | 35.0% | |
| ! | CATCACAATAATGGCCTTTT+GGG | + | chr1_1:63596429-63596448 | None:intergenic | 35.0% |
| ! | ACATCACAATAATGGCCTTT+TGG | + | chr1_1:63596430-63596449 | None:intergenic | 35.0% |
| GATTTACGACTCAAGACATT+TGG | - | chr1_1:63596520-63596539 | Msa0035410:five_prime_UTR | 35.0% | |
| TTTACGACTCAAGACATTTG+GGG | - | chr1_1:63596522-63596541 | Msa0035410:five_prime_UTR | 35.0% | |
| ATTTGGATGGAGAATGATGC+TGG | - | chr1_1:63591294-63591313 | Msa0035410:three_prime_UTR | 40.0% | |
| TCAACCTAGTTGTTCTTGGA+AGG | - | chr1_1:63591370-63591389 | Msa0035410:three_prime_UTR | 40.0% | |
| ! | GAGAAAATCTGAAGCAAAGC+AGG | + | chr1_1:63591417-63591436 | None:intergenic | 40.0% |
| AGAAACGGTTATAGGGTCAA+AGG | + | chr1_1:63591439-63591458 | None:intergenic | 40.0% | |
| AGGGGAAGTAGACAAAGAAA+CGG | + | chr1_1:63591454-63591473 | None:intergenic | 40.0% | |
| TTCTTTGTCTACTTCCCCTT+TGG | - | chr1_1:63591455-63591474 | Msa0035410:CDS | 40.0% | |
| ATACAGACTATGGCCATGTT+TGG | - | chr1_1:63591635-63591654 | Msa0035410:intron | 40.0% | |
| GAGATTATTAGGAGAGCCTA+TGG | + | chr1_1:63591827-63591846 | None:intergenic | 40.0% | |
| GGCTGTATCATAAGCTATTC+TGG | - | chr1_1:63591877-63591896 | Msa0035410:intron | 40.0% | |
| GCATATGCATCACTCTACAT+AGG | + | chr1_1:63592106-63592125 | None:intergenic | 40.0% | |
| TTCCTGAACAAGATTGTTGG+TGG | - | chr1_1:63592178-63592197 | Msa0035410:CDS | 40.0% | |
| TTCCACCAACAATCTTGTTC+AGG | + | chr1_1:63592183-63592202 | None:intergenic | 40.0% | |
| GGATCATGTAATTGGAAGTG+TGG | - | chr1_1:63592258-63592277 | Msa0035410:intron | 40.0% | |
| TTTGTGTTAGAAGCTGAGGA+AGG | - | chr1_1:63592332-63592351 | Msa0035410:intron | 40.0% | |
| CACATAAAATCATCACCGCT+AGG | + | chr1_1:63592383-63592402 | None:intergenic | 40.0% | |
| ATTTGGTACAACTGAGCATG+CGG | + | chr1_1:63592611-63592630 | None:intergenic | 40.0% | |
| GTAGATGACTGATAAGCTAG+CGG | - | chr1_1:63592716-63592735 | Msa0035410:intron | 40.0% | |
| TGCAGATTGTTTGAGCTCTA+TGG | - | chr1_1:63593123-63593142 | Msa0035410:intron | 40.0% | |
| !! | GATGGATCTAAATTTGCTGC+TGG | - | chr1_1:63593231-63593250 | Msa0035410:intron | 40.0% |
| CTTCTGTCTTTAACACGTGT+AGG | - | chr1_1:63593355-63593374 | Msa0035410:intron | 40.0% | |
| TGTCTTTAACACGTGTAGGA+TGG | - | chr1_1:63593359-63593378 | Msa0035410:intron | 40.0% | |
| GGATGGACATCTCAGAATTA+TGG | - | chr1_1:63593376-63593395 | Msa0035410:intron | 40.0% | |
| TCCAAAATTATGCGCATGCT+AGG | + | chr1_1:63593407-63593426 | None:intergenic | 40.0% | |
| ACACAAATCTGTCCGAGATA+TGG | - | chr1_1:63593439-63593458 | Msa0035410:CDS | 40.0% | |
| ! | CTGTCCGAGATATGGATTTT+AGG | - | chr1_1:63593447-63593466 | Msa0035410:CDS | 40.0% |
| CTAGCTTCAACTTCTACTGA+TGG | - | chr1_1:63593732-63593751 | Msa0035410:intron | 40.0% | |
| AGAATCTGGAAGGTTGAAGA+CGG | - | chr1_1:63593762-63593781 | Msa0035410:intron | 40.0% | |
| !! | AAATGGTTTGGTTCCATCCT+TGG | + | chr1_1:63593961-63593980 | None:intergenic | 40.0% |
| GGCGCCAAATAAAAATGGTT+TGG | + | chr1_1:63593973-63593992 | None:intergenic | 40.0% | |
| TGAACGGCGCCAAATAAAAA+TGG | + | chr1_1:63593978-63593997 | None:intergenic | 40.0% | |
| TTATTTGGCGCCGTTCAAAA+AGG | - | chr1_1:63593981-63594000 | Msa0035410:intron | 40.0% | |
| ATAAGTCTCTTACAGCGGTT+TGG | - | chr1_1:63594127-63594146 | Msa0035410:intron | 40.0% | |
| TAAGTCTCTTACAGCGGTTT+GGG | - | chr1_1:63594128-63594147 | Msa0035410:intron | 40.0% | |
| AAGTCATTTGGATAGCAAGG+TGG | - | chr1_1:63594297-63594316 | Msa0035410:intron | 40.0% | |
| ATTGCCAAAACTGTGAAGAG+TGG | - | chr1_1:63594331-63594350 | Msa0035410:intron | 40.0% | |
| ! | TTCTCCACTCTTCACAGTTT+TGG | + | chr1_1:63594338-63594357 | None:intergenic | 40.0% |
| ! | TACAATTTGCTTTCCTAGCG+GGG | - | chr1_1:63594473-63594492 | Msa0035410:CDS | 40.0% |
| ! | CAGAACTAAGGCTTCTCTTT+TGG | - | chr1_1:63594736-63594755 | Msa0035410:intron | 40.0% |
| ! | GGTGTAGTCTCTTGCTATAA+TGG | + | chr1_1:63595181-63595200 | None:intergenic | 40.0% |
| TATAGCAAGAGACTACACCT+CGG | - | chr1_1:63595182-63595201 | Msa0035410:intron | 40.0% | |
| TGGATTTCTGTCCTAGTGAA+AGG | - | chr1_1:63595222-63595241 | Msa0035410:intron | 40.0% | |
| GCCTAATAAACCAGTTCTCT+TGG | - | chr1_1:63595369-63595388 | Msa0035410:intron | 40.0% | |
| TAAACCAGTTCTCTTGGTCT+TGG | - | chr1_1:63595375-63595394 | Msa0035410:intron | 40.0% | |
| CTTACAACCTCAGTAGAATG+GGG | - | chr1_1:63595437-63595456 | Msa0035410:intron | 40.0% | |
| TCAACATCAATTCGGATGGA+TGG | - | chr1_1:63595614-63595633 | Msa0035410:intron | 40.0% | |
| GGTTAATTACGCTCAGTGAA+TGG | - | chr1_1:63595657-63595676 | Msa0035410:intron | 40.0% | |
| ! | GGTTAGTTACGTTTCATGGA+TGG | + | chr1_1:63595922-63595941 | None:intergenic | 40.0% |
| ! | TGGTTGGTGCAATTTACATG+TGG | + | chr1_1:63595943-63595962 | None:intergenic | 40.0% |
| TCGAGAACTCTGATTCATTC+TGG | - | chr1_1:63596137-63596156 | Msa0035410:intron | 40.0% | |
| CGAGAACTCTGATTCATTCT+GGG | - | chr1_1:63596138-63596157 | Msa0035410:intron | 40.0% | |
| GAGAACTCTGATTCATTCTG+GGG | - | chr1_1:63596139-63596158 | Msa0035410:intron | 40.0% | |
| ! | TTCATTCTGGGGATTTCCAA+TGG | - | chr1_1:63596150-63596169 | Msa0035410:intron | 40.0% |
| ! | TCATTCTGGGGATTTCCAAT+GGG | - | chr1_1:63596151-63596170 | Msa0035410:intron | 40.0% |
| TTGAGGCTGTTATGTAACCT+TGG | - | chr1_1:63596494-63596513 | Msa0035410:five_prime_UTR | 40.0% | |
| TTGAGTCGTAAATCCAACCA+AGG | + | chr1_1:63596514-63596533 | None:intergenic | 40.0% | |
| ! | CGCAAGTTGTTGTTGGATAG+TGG | + | chr1_1:63591116-63591135 | None:intergenic | 45.0% |
| CAATGAGCGCAAGTTGTTGT+TGG | + | chr1_1:63591123-63591142 | None:intergenic | 45.0% | |
| ATCCGAAGAGGAAAGAGAGA+GGG | + | chr1_1:63591147-63591166 | None:intergenic | 45.0% | |
| TATCCGAAGAGGAAAGAGAG+AGG | + | chr1_1:63591148-63591167 | None:intergenic | 45.0% | |
| AATGATGCTGGATCACCTCA+GGG | - | chr1_1:63591306-63591325 | Msa0035410:three_prime_UTR | 45.0% | |
| TTACTTGCGGGTCATGGATT+CGG | - | chr1_1:63591334-63591353 | Msa0035410:three_prime_UTR | 45.0% | |
| TGGACCTTCCAAGAACAACT+AGG | + | chr1_1:63591377-63591396 | None:intergenic | 45.0% | |
| AGGACAAGAATTTCCACGCT+TGG | + | chr1_1:63591397-63591416 | None:intergenic | 45.0% | |
| CACTCTACATAGGACCTGTT+TGG | + | chr1_1:63592096-63592115 | None:intergenic | 45.0% | |
| AGAGCAAGGTTTCAATCCCA+TGG | + | chr1_1:63592450-63592469 | None:intergenic | 45.0% | |
| TCATACACTCTCCTAGCTCA+AGG | + | chr1_1:63592662-63592681 | None:intergenic | 45.0% | |
| ! | ACTGATAAGCTAGCGGATAG+TGG | - | chr1_1:63592723-63592742 | Msa0035410:intron | 45.0% |
| !! | TGTAGAGGGGTTAGTTCCTT+GGG | + | chr1_1:63593174-63593193 | None:intergenic | 45.0% |
| AAGGAACTAACCCCTCTACA+GGG | - | chr1_1:63593174-63593193 | Msa0035410:intron | 45.0% | |
| !! | GGATCTAAATTTGCTGCTGG+CGG | - | chr1_1:63593234-63593253 | Msa0035410:intron | 45.0% |
| !! | GATCTAAATTTGCTGCTGGC+GGG | - | chr1_1:63593235-63593254 | Msa0035410:intron | 45.0% |
| ! | GCCTAGCATGCGCATAATTT+TGG | - | chr1_1:63593403-63593422 | Msa0035410:intron | 45.0% |
| AGGGGATAAGTCTCTTACAG+CGG | - | chr1_1:63594122-63594141 | Msa0035410:intron | 45.0% | |
| GGAACAAAATAGGGCACAAG+AGG | - | chr1_1:63594163-63594182 | Msa0035410:intron | 45.0% | |
| GGATCTACGTTCGAATTGAC+CGG | + | chr1_1:63594943-63594962 | None:intergenic | 45.0% | |
| ATAGCCAAGACCAAGAGAAC+TGG | + | chr1_1:63595382-63595401 | None:intergenic | 45.0% | |
| TATGGATGTGTGCGAGCATA+TGG | + | chr1_1:63595516-63595535 | None:intergenic | 45.0% | |
| !!! | GCTGGTTGGTTTTTTCCCAT+TGG | + | chr1_1:63596169-63596188 | None:intergenic | 45.0% |
| AAAACCAACCAGCTAGACCA+AGG | - | chr1_1:63596176-63596195 | Msa0035410:intron | 45.0% | |
| TAAACCTTGGTCTAGCTGGT+TGG | + | chr1_1:63596183-63596202 | None:intergenic | 45.0% | |
| GGTTTAAACCTTGGTCTAGC+TGG | + | chr1_1:63596187-63596206 | None:intergenic | 45.0% | |
| GATTGAGGGTCTCTCATCAT+TGG | + | chr1_1:63596208-63596227 | None:intergenic | 45.0% | |
| GGAACAACAACACATAGACG+CGG | + | chr1_1:63596265-63596284 | None:intergenic | 45.0% | |
| GGCTGTTATGTAACCTTGGT+TGG | - | chr1_1:63596498-63596517 | Msa0035410:five_prime_UTR | 45.0% | |
| !!! | AATATCATATTTAATTTAAT+TGG | - | chr1_1:63594850-63594869 | Msa0035410:intron | 5.0% |
| GACCCTCTCTCTTTCCTCTT+CGG | - | chr1_1:63591142-63591161 | Msa0035410:three_prime_UTR | 50.0% | |
| GAATGATGCTGGATCACCTC+AGG | - | chr1_1:63591305-63591324 | Msa0035410:three_prime_UTR | 50.0% | |
| ATCCATGACCCGCAAGTAAC+CGG | + | chr1_1:63591333-63591352 | None:intergenic | 50.0% | |
| AGAAGCTGAGGAAGGTGATC+CGG | - | chr1_1:63592340-63592359 | Msa0035410:intron | 50.0% | |
| !! | CTGTAGAGGGGTTAGTTCCT+TGG | + | chr1_1:63593175-63593194 | None:intergenic | 50.0% |
| CAAGGAACTAACCCCTCTAC+AGG | - | chr1_1:63593173-63593192 | Msa0035410:intron | 50.0% | |
| CTAACCCCTCTACAGGGTAT+TGG | - | chr1_1:63593180-63593199 | Msa0035410:intron | 50.0% | |
| GGAACCAATACCCTGTAGAG+GGG | + | chr1_1:63593187-63593206 | None:intergenic | 50.0% | |
| GGGAACCAATACCCTGTAGA+GGG | + | chr1_1:63593188-63593207 | None:intergenic | 50.0% | |
| TGGGAACCAATACCCTGTAG+AGG | + | chr1_1:63593189-63593208 | None:intergenic | 50.0% | |
| !! | TAAATTTGCTGCTGGCGGGT+CGG | - | chr1_1:63593239-63593258 | Msa0035410:intron | 50.0% |
| CGGACAGATTTGTGTGCTCT+TGG | + | chr1_1:63593434-63593453 | None:intergenic | 50.0% | |
| CTGATGGTTCAGCGAGAATC+TGG | - | chr1_1:63593748-63593767 | Msa0035410:intron | 50.0% | |
| TGGTTCAGCGAGAATCTGGA+AGG | - | chr1_1:63593752-63593771 | Msa0035410:intron | 50.0% | |
| ! | CGGTTTGGGACATGAGTTCA+TGG | - | chr1_1:63594142-63594161 | Msa0035410:intron | 50.0% |
| GTAATGGCTGTTAGCCACGA+CGG | - | chr1_1:63594207-63594226 | Msa0035410:CDS | 50.0% | |
| TAATGGCTGTTAGCCACGAC+GGG | - | chr1_1:63594208-63594227 | Msa0035410:CDS | 50.0% | |
| !! | GAGAAAGGTATTTCCCGTCG+TGG | + | chr1_1:63594224-63594243 | None:intergenic | 50.0% |
| CACAAATGTGATACCCCGCT+AGG | + | chr1_1:63594489-63594508 | None:intergenic | 50.0% | |
| ATGTTGCGATAGTTGTGCCG+AGG | + | chr1_1:63595202-63595221 | None:intergenic | 50.0% | |
| CGGCACAACTATCGCAACAT+TGG | - | chr1_1:63595202-63595221 | Msa0035410:intron | 50.0% | |
| CAATGCTCCCCATTCTACTG+AGG | + | chr1_1:63595447-63595466 | None:intergenic | 50.0% | |
| ! | CTCAGTAGAATGGGGAGCAT+TGG | - | chr1_1:63595445-63595464 | Msa0035410:intron | 50.0% |
| AGACGCGGTCACATATCTAC+TGG | + | chr1_1:63596250-63596269 | None:intergenic | 50.0% | |
| GTTCTTGGAAGGTCCAAGCG+TGG | - | chr1_1:63591381-63591400 | Msa0035410:exon | 55.0% | |
| GGGTGCACAGCAATAGCAAC+CGG | + | chr1_1:63592362-63592381 | None:intergenic | 55.0% | |
| GCTATTGCTGTGCACCCTAG+CGG | - | chr1_1:63592365-63592384 | Msa0035410:intron | 55.0% | |
| TTGCGAGACAGAGTGGTCAC+AGG | + | chr1_1:63593792-63593811 | None:intergenic | 55.0% | |
| GACCACTCTGTCTCGCAACT+CGG | - | chr1_1:63593794-63593813 | Msa0035410:intron | 55.0% | |
| TACCGAGTTGCGAGACAGAG+TGG | + | chr1_1:63593799-63593818 | None:intergenic | 55.0% | |
| ATCACGTGACGTGAGGATCG+CGG | + | chr1_1:63595760-63595779 | None:intergenic | 55.0% | |
| TGCTGGATCACCTCAGGGTC+CGG | - | chr1_1:63591311-63591330 | Msa0035410:three_prime_UTR | 60.0% | |
| CCTCAGGGTCCGGTTACTTG+CGG | - | chr1_1:63591321-63591340 | Msa0035410:three_prime_UTR | 60.0% | |
| CTCAGGGTCCGGTTACTTGC+GGG | - | chr1_1:63591322-63591341 | Msa0035410:three_prime_UTR | 60.0% | |
| GTCCGGTTACTTGCGGGTCA+TGG | - | chr1_1:63591328-63591347 | Msa0035410:three_prime_UTR | 60.0% | |
| CCGCAAGTAACCGGACCCTG+AGG | + | chr1_1:63591324-63591343 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 63591070 | 63596584 | 63591070 | ID=Msa0035410;Name=Msa0035410 |
| chr1_1 | mRNA | 63591070 | 63596584 | 63591070 | ID=Msa0035410-mRNA-1;Parent=Msa0035410;Name=Msa0035410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230|1|1|1|1|1|10|323|392 |
| chr1_1 | exon | 63591070 | 63591583 | 63591070 | ID=Msa0035410-mRNA-1:exon:20315;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63592154 | 63592224 | 63592154 | ID=Msa0035410-mRNA-1:exon:20314;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63592411 | 63592530 | 63592411 | ID=Msa0035410-mRNA-1:exon:20313;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63593410 | 63593530 | 63593410 | ID=Msa0035410-mRNA-1:exon:20312;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63593652 | 63593724 | 63593652 | ID=Msa0035410-mRNA-1:exon:20311;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63593839 | 63593938 | 63593839 | ID=Msa0035410-mRNA-1:exon:20310;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63594186 | 63594277 | 63594186 | ID=Msa0035410-mRNA-1:exon:20309;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63594394 | 63594526 | 63594394 | ID=Msa0035410-mRNA-1:exon:20308;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63595228 | 63595328 | 63595228 | ID=Msa0035410-mRNA-1:exon:20307;Parent=Msa0035410-mRNA-1 |
| chr1_1 | exon | 63596178 | 63596584 | 63596178 | ID=Msa0035410-mRNA-1:exon:20306;Parent=Msa0035410-mRNA-1 |
| chr1_1 | five_prime_UTR | 63596355 | 63596584 | 63596355 | ID=Msa0035410-mRNA-1:five_prime_utr;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63596178 | 63596354 | 63596178 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63595228 | 63595328 | 63595228 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63594394 | 63594526 | 63594394 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63594186 | 63594277 | 63594186 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63593839 | 63593938 | 63593839 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63593652 | 63593724 | 63593652 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63593410 | 63593530 | 63593410 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63592411 | 63592530 | 63592411 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63592154 | 63592224 | 63592154 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | CDS | 63591393 | 63591583 | 63591393 | ID=Msa0035410-mRNA-1:cds;Parent=Msa0035410-mRNA-1 |
| chr1_1 | three_prime_UTR | 63591070 | 63591392 | 63591070 | ID=Msa0035410-mRNA-1:three_prime_utr;Parent=Msa0035410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
