AlfalfaGEDB | Msa0035520

M. sativa cultivar zhongmu-4 / Msa0035520

KEGG: K06276
GO: GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033674 GO:0035091 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070300 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035520	sp\|Q9XF67\|PDPK1_ARATH	80.924	498	87	3	1	497	1	491	0.0	833

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035520	A0A072VPR7	98.994	497	5	0	1	497	1	497	0.0	1018

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035520	Msa0035600	0.995291	7.972052e-215	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035520	MtrunA17_Chr1g0197721	98.994	497	5	0	1	497	1	497	0.0	1018
Msa0035520	MtrunA17_Chr4g0059751	34.824	313	185	3	43	347	81	382	1.61e-66	220
Msa0035520	MtrunA17_Chr7g0245031	36.170	282	169	1	48	329	145	415	4.24e-64	215
Msa0035520	MtrunA17_Chr6g0478601	34.270	356	203	6	31	362	91	439	1.25e-56	196
Msa0035520	MtrunA17_Chr4g0030361	35.976	328	183	6	32	334	284	609	1.48e-55	196
Msa0035520	MtrunA17_Chr8g0369091	37.179	312	174	6	44	334	592	902	2.95e-55	199
Msa0035520	MtrunA17_Chr2g0285711	31.343	402	197	9	32	369	59	445	8.61e-54	187
Msa0035520	MtrunA17_Chr1g0183651	34.242	330	180	6	31	326	100	426	2.27e-52	186
Msa0035520	MtrunA17_Chr1g0167311	35.849	318	166	6	50	332	114	428	2.62e-52	185
Msa0035520	MtrunA17_Chr3g0135951	33.038	339	181	6	31	326	74	409	5.00e-52	184

Showing 1 to 10 of 384 entries

Previous1 2 3 4 5…39Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035520	AT5G04510.1	80.924	498	87	3	1	497	1	491	0.0	833
Msa0035520	AT3G10540.1	81.288	497	82	4	1	497	1	486	0.0	831
Msa0035520	AT5G04510.2	78.841	397	76	3	1	396	1	390	0.0	648
Msa0035520	AT5G04510.3	85.374	294	36	2	1	294	1	287	0.0	526
Msa0035520	AT3G08720.1	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0035520	AT3G08720.3	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0035520	AT3G08720.4	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0035520	AT3G08720.2	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0035520	AT3G08730.1	37.589	282	164	2	48	329	131	400	2.37e-67	224
Msa0035520	AT3G08730.2	37.589	282	164	2	48	329	131	400	2.37e-67	224

Showing 1 to 10 of 524 entries

Previous1 2 3 4 5…53Next

Find 167 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGATGGGAATGTA+GGG	0.487589	1_1:-63754423	Msa0035520:five_prime_UTR
AAAGCTTTGGAATTGGAAAT+TGG	0.212137	1_1:+63754551	None:intergenic
AAAGGTGAAAGCTTTGGAAT+TGG	0.406284	1_1:+63754544	None:intergenic
AAATATAGCCGCACAATGCC+AGG	0.437484	1_1:+63752735	None:intergenic
AACAGTTACCCAAAGGTTGC+TGG	0.366889	1_1:+63751245	None:intergenic
AACTCCTCCGAAACTTGCTC+TGG	0.483658	1_1:-63749312	Msa0035520:CDS
AACTTGTTACTCACAACTGA+AGG	0.589816	1_1:-63751495	Msa0035520:CDS
AAGAGCATCTCAGTGGAAAA+AGG	0.364147	1_1:-63747883	Msa0035520:CDS
AAGCAAGAGACCTTATTGAC+CGG	0.573869	1_1:-63750887	Msa0035520:CDS
AAGGGAATTTGAGATTGGAA+TGG	0.509625	1_1:+63754520	None:intergenic

Showing 1 to 10 of 167 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGATGTTATGCCTAAAT+TGG	+	chr1_1:63747557-63747576	None:intergenic	30.0%
AGAGAAGAAAACAATGATGT+TGG	+	chr1_1:63747609-63747628	None:intergenic	30.0%
CTAGAGAGAGAAAATTATGA+TGG	-	chr1_1:63747777-63747796	Msa0035520:three_prime_UTR	30.0%
ATTCCAAGCTAAAGATTCAA+AGG	-	chr1_1:63747860-63747879	Msa0035520:CDS	30.0%
TGAATTGTATAATTCTCCTG+AGG	+	chr1_1:63747961-63747980	None:intergenic	30.0%
TCAGGAGAATTATACAATTC+AGG	-	chr1_1:63747960-63747979	Msa0035520:intron	30.0%
TACAATTCAGGACTTTGAAT+TGG	-	chr1_1:63747972-63747991	Msa0035520:intron	30.0%
ACAATTCAGGACTTTGAATT+GGG	-	chr1_1:63747973-63747992	Msa0035520:intron	30.0%
GTGATTATATATGTTGGTGT+CGG	-	chr1_1:63748257-63748276	Msa0035520:CDS	30.0%
TTCAACAGTAGCAACAATAA+TGG	+	chr1_1:63748485-63748504	None:intergenic	30.0%

Showing 1 to 10 of 514 entries

Previous1 2 3 4 5…52Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	63747504	63754728	63747504	ID=Msa0035520;Name=Msa0035520
chr1_1	mRNA	63747504	63754728	63747504	ID=Msa0035520-mRNA-1;Parent=Msa0035520;Name=Msa0035520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=331\|1\|1\|1\|1\|1\|11\|353\|497
chr1_1	exon	63747504	63747940	63747504	ID=Msa0035520-mRNA-1:exon:20373;Parent=Msa0035520-mRNA-1
chr1_1	exon	63748204	63748426	63748204	ID=Msa0035520-mRNA-1:exon:20372;Parent=Msa0035520-mRNA-1
chr1_1	exon	63749010	63749173	63749010	ID=Msa0035520-mRNA-1:exon:20371;Parent=Msa0035520-mRNA-1
chr1_1	exon	63749298	63749438	63749298	ID=Msa0035520-mRNA-1:exon:20370;Parent=Msa0035520-mRNA-1
chr1_1	exon	63750881	63751046	63750881	ID=Msa0035520-mRNA-1:exon:20369;Parent=Msa0035520-mRNA-1
chr1_1	exon	63751254	63751332	63751254	ID=Msa0035520-mRNA-1:exon:20368;Parent=Msa0035520-mRNA-1
chr1_1	exon	63751415	63751523	63751415	ID=Msa0035520-mRNA-1:exon:20367;Parent=Msa0035520-mRNA-1
chr1_1	exon	63751600	63751701	63751600	ID=Msa0035520-mRNA-1:exon:20366;Parent=Msa0035520-mRNA-1
chr1_1	exon	63752547	63752599	63752547	ID=Msa0035520-mRNA-1:exon:20365;Parent=Msa0035520-mRNA-1
chr1_1	exon	63752709	63752889	63752709	ID=Msa0035520-mRNA-1:exon:20364;Parent=Msa0035520-mRNA-1
chr1_1	exon	63754206	63754728	63754206	ID=Msa0035520-mRNA-1:exon:20363;Parent=Msa0035520-mRNA-1
chr1_1	five_prime_UTR	63754398	63754728	63754398	ID=Msa0035520-mRNA-1:five_prime_utr;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63754206	63754397	63754206	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63752709	63752889	63752709	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63752547	63752599	63752547	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63751600	63751701	63751600	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63751415	63751523	63751415	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63751254	63751332	63751254	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63750881	63751046	63750881	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63749298	63749438	63749298	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63749010	63749173	63749010	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63748204	63748426	63748204	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	CDS	63747857	63747940	63747857	ID=Msa0035520-mRNA-1:cds;Parent=Msa0035520-mRNA-1
chr1_1	three_prime_UTR	63747504	63747856	63747504	ID=Msa0035520-mRNA-1:three_prime_utr;Parent=Msa0035520-mRNA-1

Gene Sequence

>Msa0035520

ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGCTAAAGATTCAAAGGAGTTCTTCCTCTTCCAATGGTGGTGGTGGTGGTGCTGGGAGTGTTCAGAGATCCAAAAGCTTTGCTTTTAGAGCTCCTCAGGAGAATTATACAATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAGTTGTGTATGCAATGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACTGCATATGTGAAGTTGGAACGCATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGCGGCTATATTTCACATTTCAAGACACATTTTCTCTGTACATGGCACTTGAATCATGTGAAGGTGGAGAGCTTTTTGATCAAATTACCAGGAAAAGTCGTCTAACTCAGGACGAGGCACGATTTTATGCAGCTGAAGTTGTCGATGCTCTTGAATACATACACAGTTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTGTTACTCACAACTGAAGGACATATTAAAATAGCTGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATTACTGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACATTCGTGGGAACTGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCCCCAGCAACCTTTGGAAATGACCTTTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCAAGAGAAATTCGATTTCCTGATTACTTTTCAGACGAAGCAAGAGACCTTATTGACCGGCTATTGGATTTAGACCCCAGCAGGAGACCAGGTGCAGGACCCGATGGTTATGCTATTTTGAAAAGCCACCCCTTTTTCAAGGGGGTTGACTGGAATAACTTAAGGGCACAAACTCCTCCGAAACTTGCTCTGGAACCTGGGGCAGGGACTCAATCGCCTGCTGATGATTCTCATGAGTCGTCATGGAGTCCTGCTCACACTGGCGATGGTTCTGCAGCTTCTGCTAGACAGCCTGATGGTGCTACATCGTCTTCAGAGGGAACTGGTTCCATAACCAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGAGCCTGGGGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTACAAAAGCTAACAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCGAAGTTGATCTATGTTGACCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATTCAAGTGACTAGTCCCTCAAATTTCAAGATTTGCACACCGAAAAAGGTAATGTCGTTTGAGGATGCAAAGCAAAGAGCATCTCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA

Protein sequence

>Msa0035520

MLEMEKDFDSKLKIQRSSSSSNGGGGGAGSVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGVVYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDTFSLYMALESCEGGELFDQITRKSRLTQDEARFYAAEVVDALEYIHSLGVIHRDIKPENLLLTTEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKSHPFFKGVDWNNLRAQTPPKLALEPGAGTQSPADDSHESSWSPAHTGDGSAASARQPDGATSSSEGTGSITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSNFKICTPKKVMSFEDAKQRASQWKKAIEGLQNR*