AlfalfaGEDB | Msa0041110

M. sativa cultivar zhongmu-4 / Msa0041110

KEGG: K04733
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041110	XP_013469925.2	88.227	671	61	3	1	653	1	671	0.0	1158

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041110	sp\|Q8S9L6\|CRK29_ARATH	51.767	651	273	12	7	623	5	648	0.0	618

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041110	A0A396JUZ0	88.227	671	61	3	1	653	1	671	0.0	1158

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0041110	Msa0135710	0.918600	1.275870e-86	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0041110	MtrunA17_Chr1g0206531	88.227	671	61	3	1	653	1	671	1158
Msa0041110	MtrunA17_Chr1g0206461	84.862	654	95	2	1	653	1	651	1131
Msa0041110	MtrunA17_Chr1g0206521	83.841	656	100	4	1	653	643	1295	1078
Msa0041110	MtrunA17_Chr1g0206521	84.194	620	93	3	18	635	19	635	1028
Msa0041110	MtrunA17_Chr1g0206451	85.518	656	92	3	1	653	35	690	1050
Msa0041110	MtrunA17_Chr1g0154371	62.463	674	229	11	1	653	8	678	774
Msa0041110	MtrunA17_Chr5g0426941	58.728	676	236	13	10	653	1	665	751
Msa0041110	MtrunA17_Chr1g0154311	59.584	673	235	11	11	653	5	670	743
Msa0041110	MtrunA17_Chr1g0206561	59.545	660	246	8	10	653	1	655	741
Msa0041110	MtrunA17_Chr1g0154351	56.871	684	254	8	1	653	1	674	736

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0041110	AT4G21410.3	51.767	651	273	12	7	623	5	648	618
Msa0041110	AT4G23180.1	49.922	645	291	13	29	653	37	669	610
Msa0041110	AT4G38830.1	49.768	647	302	8	27	653	22	665	608
Msa0041110	AT4G05200.1	47.910	670	316	14	5	652	3	661	600
Msa0041110	AT4G05200.2	47.910	670	316	14	5	652	21	679	600
Msa0041110	AT4G21400.2	51.827	602	272	8	36	620	37	637	590
Msa0041110	AT4G23230.1	49.918	609	274	11	31	620	26	622	581
Msa0041110	AT4G21400.1	50.651	614	273	9	36	620	37	649	580
Msa0041110	AT4G23280.1	48.348	666	296	16	20	653	17	666	575
Msa0041110	AT4G23280.2	48.645	664	295	16	20	653	17	664	575

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Find 131 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTCAACAAATTC+AGG	0.411251	1_1:-71396835	Msa0041110:CDS
AAACTTGGACATGGCGGATT+TGG	0.256425	1_1:-71396991	Msa0041110:CDS
AAAGAAAGCACAATTGGATT+GGG	0.471010	1_1:-71396570	Msa0041110:CDS
AAAGCTTGTCGCGTTCTTCA+TGG	0.392358	1_1:-71395954	Msa0041110:CDS
AACAACAGTCGGCACAACTA+TGG	0.428354	1_1:+71397407	None:intergenic
AACGCCATTGGACTCTGCAG+AGG	0.649863	1_1:-71398169	Msa0041110:CDS
AAGCACAATTGGATTGGGAA+AGG	0.584292	1_1:-71396565	Msa0041110:CDS
AAGCTTGTCGCGTTCTTCAT+GGG	0.499517	1_1:-71395953	Msa0041110:CDS
AAGGCAAGGATAAATCTCGA+AGG	0.672590	1_1:-71397336	Msa0041110:intron
AATATGTGATTAACAAGAGG+AGG	0.568371	1_1:+71398469	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGTGATTAACAAGAGG+AGG	+	chr1_1:71395158-71395177	None:intergenic	30.0%
GAGAAAGAGAAAAGAATACA+AGG	+	chr1_1:71395243-71395262	None:intergenic	30.0%
CCGATCAATATTTGACAATA+TGG	-	chr1_1:71395601-71395620	Msa0041110:CDS	30.0%
GAGTTCCACATATAAAATGA+AGG	+	chr1_1:71395635-71395654	None:intergenic	30.0%
GTCAATTTAATCGAGTTCTA+GGG	-	chr1_1:71395675-71395694	Msa0041110:CDS	30.0%
TCTACATGGTAATTACAGTT+AGG	-	chr1_1:71396044-71396063	Msa0041110:CDS	30.0%
ACGACTAACTAATGGAAAAA+AGG	+	chr1_1:71396105-71396124	None:intergenic	30.0%
TGACAATGATGATATTGACA+TGG	-	chr1_1:71396545-71396564	Msa0041110:CDS	30.0%
AAAAGGTTGTCAACAAATTC+AGG	-	chr1_1:71396789-71396808	Msa0041110:CDS	30.0%
TCCAATTGTGCTTTCTTTAT+TGG	+	chr1_1:71397052-71397071	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	71395104	71398542	71395104	ID=Msa0041110;Name=Msa0041110
chr1_1	mRNA	71395104	71398542	71395104	ID=Msa0041110-mRNA-1;Parent=Msa0041110;Name=Msa0041110-mRNA-1;_AED=0.10;_eAED=0.10;_QI=105\|1\|1\|1\|0.62\|0.44\|9\|310\|653
chr1_1	exon	71395104	71395166	71395104	ID=Msa0041110-mRNA-1:exon:23690;Parent=Msa0041110-mRNA-1
chr1_1	exon	71395195	71395485	71395195	ID=Msa0041110-mRNA-1:exon:23689;Parent=Msa0041110-mRNA-1
chr1_1	exon	71395534	71395795	71395534	ID=Msa0041110-mRNA-1:exon:23688;Parent=Msa0041110-mRNA-1
chr1_1	exon	71395926	71396076	71395926	ID=Msa0041110-mRNA-1:exon:23687;Parent=Msa0041110-mRNA-1
chr1_1	exon	71396362	71396599	71396362	ID=Msa0041110-mRNA-1:exon:23686;Parent=Msa0041110-mRNA-1
chr1_1	exon	71396680	71396890	71396680	ID=Msa0041110-mRNA-1:exon:23685;Parent=Msa0041110-mRNA-1
chr1_1	exon	71396978	71397111	71396978	ID=Msa0041110-mRNA-1:exon:23684;Parent=Msa0041110-mRNA-1
chr1_1	exon	71397337	71397459	71397337	ID=Msa0041110-mRNA-1:exon:23683;Parent=Msa0041110-mRNA-1
chr1_1	exon	71397639	71398542	71397639	ID=Msa0041110-mRNA-1:exon:23682;Parent=Msa0041110-mRNA-1
chr1_1	five_prime_UTR	71398438	71398542	71398438	ID=Msa0041110-mRNA-1:five_prime_utr;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71397639	71398437	71397639	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71397337	71397459	71397337	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71396978	71397111	71396978	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71396680	71396890	71396680	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71396362	71396599	71396362	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71395926	71396076	71395926	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71395534	71395795	71395534	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	CDS	71395442	71395485	71395442	ID=Msa0041110-mRNA-1:cds;Parent=Msa0041110-mRNA-1
chr1_1	three_prime_UTR	71395195	71395441	71395195	ID=Msa0041110-mRNA-1:three_prime_utr;Parent=Msa0041110-mRNA-1
chr1_1	three_prime_UTR	71395104	71395166	71395104	ID=Msa0041110-mRNA-1:three_prime_utr;Parent=Msa0041110-mRNA-1

Gene Sequence

>Msa0041110

ATGGCAATTGTTTCTTGCAAGTTATTACTTTCCTTGTATTCTTTTCTCTTTCTCATTACTTTTGTATCTCAAGCCATAGCCCAACCAAATTTTCTGTACCACTTCTGTATAAACAATAATGGCAACTACACAGCCAATAGCACCTATCAAAACAACCTCAATACCCTTTTGTCCAATCTCACTTCCAACGAACAAATCAACTACGGTTTCTACAATCTCTCTTATGGCCAAAACACCGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCCGACGTTTGCCGCAGCTGTCTCAACGATTCAAGAATTCTTCTCACAAAACTTTGTCCAAACCAAAAAGAAGCAATTGGTTGGTATGATAACTGCATGCTGCGTTACTCAAACCGATCAATATTTGACAATATGGAAGATTCACCTTCATTTTATATGTGGAACTCACAAAATGCAACAGAGGTGGGTCAATTTAATCGAGTTCTAGGGGACTTGATGAAGAGACTGAAAGAAATAGCTGCATCAAGTGATTCTCGTCGTAAGTTTGCTACGGATAATGCAACTGATGTGAATTTAAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTGTCAGAGCAAGATTGCAATGATTGTTTAGAGCGTGCTATTTCAGAAATTCCAACTTGTTGTAATAACAAAATTGGTGGTAGAGTTGTTAAACCAAGTTGCAATATTAGATATGAAACCTCTCGCTTTTACGATTCTACGACAGTAATAGACCAAGAAGAAACCTCCCCGACAGAAGAAGAAAAAAGCAAATCATCACATACTACCATCGCCATAGTTGTGCCGACTGTTGTTGTTGTTGCTGCCCTGCTAATTGTCATTTACATATGCTTAAGGAAAAGGAAGGCAAGGATAAATCTCGAAGAAATCGAAGATGACAATGATGATATTGACATGGCTGAGTCATTGCAATTCAACTTCGAGACATTACAAGTTGCTACAAGTAACTTTTCTGAAGCTAATAAACTTGGACATGGCGGATTTGGAGTTGTTTATCAGGGTATACTCTCTGGTGGACAAGTCATTGCCGTCAAAAGGTTGTCAACAAATTCAGGACAAGGGGATGTTGAATTTAAGAATGAAGTGCTTTTAGTCGCTAAGCTTCAACATCGAAATTTAGTTCGACTACTTGGTTTTTGTCTAGAAGGAAGAGAACGATTGCTTGTCTATGAATTTGTTTCCAATAAAAGTCTTGATTATTTTATATTTGATCCAATAAAGAAAGCACAATTGGATTGGGAAAGGCGCTATAAAATCATTGGAGGTATTGCTAGAGGCATTCTTTACCTTCATGAGGATTCTCAACTCCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTAGACGAAAAGTTGAATCCTAAAATATCAGATTTTGGTATGGCCAGACTACTTCTTGTTGATCAAACTCAAGTAAATACAAATAAAATCGTTGGAACATACGGATATATGGCTCCTGAGTATGCAATGTTTGGAGAATTTTCGGTAAAATCAGATGTTTTTAGTTTTGGTGTACTAGTTTTGGAGATTATAAGTGGCCAGAAAGCTTGTCGCGTTCTTCATGGGCAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATAGATCCATCATTAAACAACGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGTTTACTATGTGTTCAAGAAAATGTGGTTGAAAGACCAACAATGGCAACCGTTGTACTCATGCTTAGTAGTTATTCTATCTCTCTCTCGATACCTTTGGAGCCTGCATCTATTGTGGGCGGCAGAACTAGAAGCCTTCAAGTTCGAGACATGCAATTTGAGGGAGAATCGATAAACCATGCTTCAATTACTGACCCATACCCTCGATAG

Protein sequence

>Msa0041110

MAIVSCKLLLSLYSFLFLITFVSQAIAQPNFLYHFCINNNGNYTANSTYQNNLNTLLSNLTSNEQINYGFYNLSYGQNTDKVNAIGLCRGDVKPDVCRSCLNDSRILLTKLCPNQKEAIGWYDNCMLRYSNRSIFDNMEDSPSFYMWNSQNATEVGQFNRVLGDLMKRLKEIAASSDSRRKFATDNATDVNLNFQTIYGLVQCTPDLSEQDCNDCLERAISEIPTCCNNKIGGRVVKPSCNIRYETSRFYDSTTVIDQEETSPTEEEKSKSSHTTIAIVVPTVVVVAALLIVIYICLRKRKARINLEEIEDDNDDIDMAESLQFNFETLQVATSNFSEANKLGHGGFGVVYQGILSGGQVIAVKRLSTNSGQGDVEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVSNKSLDYFIFDPIKKAQLDWERRYKIIGGIARGILYLHEDSQLRIIHRDLKASNILLDEKLNPKISDFGMARLLLVDQTQVNTNKIVGTYGYMAPEYAMFGEFSVKSDVFSFGVLVLEIISGQKACRVLHGQSQEDLLSFAWRNWREGTITNIIDPSLNNGSQNEIMRCIHIGLLCVQENVVERPTMATVVLMLSSYSISLSIPLEPASIVGGRTRSLQVRDMQFEGESINHASITDPYPR*