Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044790 | sp|Q8N7N5|DCAF8_MOUSE | 41.007 | 417 | 194 | 12 | 11 | 422 | 147 | 516 | 2.42e-85 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044790 | Msa0183190 | 0.805621 | 1.221757e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044790 | MtrunA17_Chr1g0211421 | 84.461 | 547 | 34 | 4 | 1 | 546 | 1 | 497 | 0.0 | 906 |
| Msa0044790 | MtrunA17_Chr2g0325981 | 50.000 | 408 | 181 | 4 | 16 | 422 | 14 | 399 | 1.08e-140 | 415 |
| Msa0044790 | MtrunA17_Chr3g0133201 | 31.317 | 281 | 155 | 7 | 33 | 279 | 30 | 306 | 2.15e-33 | 135 |
| Msa0044790 | MtrunA17_Chr3g0133201 | 51.190 | 84 | 40 | 1 | 326 | 408 | 611 | 694 | 2.84e-19 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044790 | AT4G35140.2 | 62.047 | 469 | 157 | 4 | 3 | 466 | 6 | 458 | 0.0 | 578 |
| Msa0044790 | AT4G35140.1 | 67.070 | 413 | 129 | 1 | 7 | 419 | 13 | 418 | 0.0 | 577 |
| Msa0044790 | AT4G38480.1 | 63.438 | 413 | 124 | 2 | 19 | 431 | 21 | 406 | 0.0 | 536 |
| Msa0044790 | AT4G38480.2 | 62.406 | 399 | 123 | 2 | 33 | 431 | 2 | 373 | 3.21e-179 | 512 |
| Msa0044790 | AT3G45620.1 | 48.956 | 431 | 191 | 4 | 4 | 427 | 5 | 413 | 1.68e-141 | 417 |
| Msa0044790 | AT3G45620.2 | 45.073 | 477 | 196 | 5 | 28 | 460 | 57 | 511 | 3.46e-136 | 405 |
| Msa0044790 | AT5G10940.2 | 31.304 | 345 | 199 | 11 | 25 | 338 | 22 | 359 | 1.41e-37 | 148 |
| Msa0044790 | AT5G10940.2 | 47.561 | 82 | 42 | 1 | 328 | 408 | 610 | 691 | 1.02e-17 | 87.4 |
| Msa0044790 | AT5G10940.1 | 31.959 | 291 | 168 | 8 | 25 | 285 | 22 | 312 | 1.40e-36 | 145 |
| Msa0044790 | AT5G10940.1 | 47.561 | 82 | 42 | 1 | 328 | 408 | 613 | 694 | 1.10e-17 | 87.0 |
Find 140 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGTGACATTCTGCTTTC+AGG | 0.144477 | 1_1:-76381256 | Msa0044790:CDS |
| TTGATATCCGCAAGTATAAA+TGG | 0.179923 | 1_1:-76380610 | Msa0044790:CDS |
| GTGAAGGGTGTTAATTTCTT+TGG | 0.223337 | 1_1:-76380269 | Msa0044790:CDS |
| TGGGATGCATCCACTGATTT+TGG | 0.240147 | 1_1:-76380590 | Msa0044790:CDS |
| AACCCATATCTTGTGTAAAA+AGG | 0.254080 | 1_1:+76380447 | None:intergenic |
| CCAAATCTCTTTGCGGTGGC+TGG | 0.272271 | 1_1:-76380656 | Msa0044790:CDS |
| CCAGCCACCGCAAAGAGATT+TGG | 0.295922 | 1_1:+76380656 | None:intergenic |
| TTGGGACTGGACCCTGTTCC+CGG | 0.299447 | 1_1:-76380425 | Msa0044790:CDS |
| ACGTGTGGAAACCAAGTTAT+TGG | 0.302451 | 1_1:-76380964 | Msa0044790:CDS |
| TATCACTATCCACAGATATA+GGG | 0.331143 | 1_1:+76380399 | None:intergenic |
| TCGGAGGCGGCAAGGCGGTT+AGG | 0.338921 | 1_1:+76381487 | None:intergenic |
| GATATAGGGGATCCGGGAAC+AGG | 0.343194 | 1_1:+76380413 | None:intergenic |
| GTATCACTATCCACAGATAT+AGG | 0.350823 | 1_1:+76380398 | None:intergenic |
| TGAAGGGTGTTAATTTCTTT+GGG | 0.350929 | 1_1:-76380268 | Msa0044790:CDS |
| ACTATCCTTAAGTGGCTTGC+AGG | 0.355112 | 1_1:+76380733 | None:intergenic |
| ATTCTCTGGGATTGGGAAAC+CGG | 0.357909 | 1_1:-76381214 | Msa0044790:CDS |
| TGCTTTCAGGTTCTGATGAT+AGG | 0.358629 | 1_1:-76381243 | Msa0044790:CDS |
| ACATCAGCATCTGTGTTTGA+TGG | 0.359309 | 1_1:+76380338 | None:intergenic |
| CAGCCACCGCAAAGAGATTT+GGG | 0.362116 | 1_1:+76380657 | None:intergenic |
| GTAGCTTTCTCGAGGGCCTT+TGG | 0.362601 | 1_1:+76380062 | None:intergenic |
| ATTAAGCTCTCCTTCCATTC+CGG | 0.375787 | 1_1:-76381187 | Msa0044790:CDS |
| TTACAGTTTGATCTTAGAAC+TGG | 0.379457 | 1_1:-76380776 | Msa0044790:intron |
| TTTCACCTGCAAGCCACTTA+AGG | 0.381446 | 1_1:-76380738 | Msa0044790:CDS |
| TTTACACAAGATATGGGTTT+GGG | 0.387005 | 1_1:-76380443 | Msa0044790:CDS |
| GGAGGATTATTCTCTGGGAT+TGG | 0.393926 | 1_1:-76381222 | Msa0044790:CDS |
| CGGAGGCGGCAAGGCGGTTA+GGG | 0.397513 | 1_1:+76381488 | None:intergenic |
| GCAAAGAGATTTGGGTTCCT+TGG | 0.404897 | 1_1:+76380665 | None:intergenic |
| GATGAGAGAGTAGGAATAAC+AGG | 0.408500 | 1_1:-76380527 | Msa0044790:CDS |
| ATGATAGGAGGATTATTCTC+TGG | 0.413210 | 1_1:-76381228 | Msa0044790:CDS |
| CCACAGGTGTAAAATATATG+AGG | 0.420445 | 1_1:+76380894 | None:intergenic |
| CACTTGTGCTGCTGATGGCC+AGG | 0.423887 | 1_1:-76381104 | Msa0044790:intron |
| ATCCACAGATATAGGGGATC+CGG | 0.427298 | 1_1:+76380406 | None:intergenic |
| TTGATGCCTGCCCAATAACT+TGG | 0.432454 | 1_1:+76380953 | None:intergenic |
| GAGGATTATTCTCTGGGATT+GGG | 0.434417 | 1_1:-76381221 | Msa0044790:CDS |
| CTCAACTGAACAAGTCATCT+TGG | 0.441626 | 1_1:+76378164 | None:intergenic |
| CAATTGCAATTGCATTAAGA+TGG | 0.442204 | 1_1:+76380690 | None:intergenic |
| GATGTACCAGATAGCTTCTC+AGG | 0.443691 | 1_1:-76378353 | Msa0044790:intron |
| TAATTCCAACTATCCTTAAG+TGG | 0.445528 | 1_1:+76380725 | None:intergenic |
| CTGTGTCCTTTGAAAACTTG+AGG | 0.447470 | 1_1:+76380305 | None:intergenic |
| CGTGTGGAAACCAAGTTATT+GGG | 0.448241 | 1_1:-76380963 | Msa0044790:CDS |
| AGAGATCGCGAAGGGGTTTG+TGG | 0.451106 | 1_1:+76381548 | None:intergenic |
| TGATATCCGCAAGTATAAAT+GGG | 0.454556 | 1_1:-76380609 | Msa0044790:CDS |
| AAGCTCCCTTTGTTCAGAAA+AGG | 0.454590 | 1_1:+76380499 | None:intergenic |
| CCCTTTGTTCAGAAAAGGCC+AGG | 0.454950 | 1_1:+76380504 | None:intergenic |
| ACAAGATATGGGTTTGGGAC+TGG | 0.455888 | 1_1:-76380438 | Msa0044790:CDS |
| GTGAAAACAGTTGCAACATC+AGG | 0.468633 | 1_1:+76378326 | None:intergenic |
| TGTGTCCTTTGAAAACTTGA+GGG | 0.469822 | 1_1:+76380306 | None:intergenic |
| GCAAGCCACTTAAGGATAGT+TGG | 0.471845 | 1_1:-76380730 | Msa0044790:CDS |
| CAAATCTCTTTGCGGTGGCT+GGG | 0.475125 | 1_1:-76380655 | Msa0044790:CDS |
| AAGTGACAATGCTACGATCA+TGG | 0.475789 | 1_1:+76381122 | None:intergenic |
| CATGCTCAGCTTCTTGAAGA+TGG | 0.477635 | 1_1:-76380987 | Msa0044790:CDS |
| CTCACCACATACTCACAATT+AGG | 0.480965 | 1_1:+76380245 | None:intergenic |
| GAAACACGCACGCAGAAGAA+AGG | 0.484244 | 1_1:-76381772 | Msa0044790:five_prime_UTR |
| CATAAGTTGGCTATCGAGCC+TGG | 0.488382 | 1_1:-76380921 | Msa0044790:CDS |
| CACTTCCAAGACGGAGGGCT+AGG | 0.489594 | 1_1:-76378306 | Msa0044790:CDS |
| AGGAAACACGAAACACAATC+TGG | 0.490465 | 1_1:-76381708 | Msa0044790:five_prime_UTR |
| TCTGTCCTAGCCCTCCGTCT+TGG | 0.497042 | 1_1:+76378301 | None:intergenic |
| TTGAGCATGACATCAAGATA+TGG | 0.498760 | 1_1:-76380088 | Msa0044790:CDS |
| GAAAACATTGTTACTATGAC+CGG | 0.499634 | 1_1:+76381168 | None:intergenic |
| AGTGAGGCATGAACTTAGCC+TGG | 0.501626 | 1_1:+76381146 | None:intergenic |
| TGATAGGAGGATTATTCTCT+GGG | 0.505509 | 1_1:-76381227 | Msa0044790:CDS |
| AAGTTATTGGGCAGGCATCA+AGG | 0.508381 | 1_1:-76380951 | Msa0044790:CDS |
| GTAAATGGTGACCTCGGAGG+CGG | 0.512787 | 1_1:+76381474 | None:intergenic |
| TCAAGGACGGGCTCATAAGT+TGG | 0.522394 | 1_1:-76380934 | Msa0044790:CDS |
| GATAGTGATACAAGTGAAGC+AGG | 0.522808 | 1_1:-76380386 | Msa0044790:CDS |
| TTGAAGAGTGAATCTGAGAG+TGG | 0.522928 | 1_1:+76381746 | None:intergenic |
| AAGGAACCCAAATCTCTTTG+CGG | 0.527523 | 1_1:-76380663 | Msa0044790:CDS |
| ATTGGGCAGGCATCAAGGAC+GGG | 0.535058 | 1_1:-76380946 | Msa0044790:CDS |
| TAAGTGACCGAGCTCTCGAT+TGG | 0.535578 | 1_1:+76381525 | None:intergenic |
| AGTGAAGCAGGAGGCAGTCA+TGG | 0.535759 | 1_1:-76380374 | Msa0044790:CDS |
| ACCGACGATGATGGTGATGA+TGG | 0.539335 | 1_1:-76378199 | Msa0044790:CDS |
| GACGATTCTACCGACGATGA+TGG | 0.539752 | 1_1:-76378208 | Msa0044790:CDS |
| TCATATTTGATGAAATTCGT+TGG | 0.543454 | 1_1:-76378735 | Msa0044790:CDS |
| GAAACACAATCTGGCTTCCA+AGG | 0.544275 | 1_1:-76381699 | Msa0044790:intron |
| ATTGTCACTTGTGCTGCTGA+TGG | 0.547037 | 1_1:-76381109 | Msa0044790:CDS |
| TGATTATGATGATGATAATG+AGG | 0.549658 | 1_1:-76378596 | Msa0044790:CDS |
| TTGGCAAAGTAGCTTTCTCG+AGG | 0.554350 | 1_1:+76380054 | None:intergenic |
| TGGGCCTAATTGTGAGTATG+TGG | 0.554431 | 1_1:-76380249 | Msa0044790:CDS |
| TGGAAACCAAGTTATTGGGC+AGG | 0.555704 | 1_1:-76380959 | Msa0044790:CDS |
| AGTGACAATGCTACGATCAT+GGG | 0.556241 | 1_1:+76381123 | None:intergenic |
| TTCAACAACGAACGCATCAC+AGG | 0.556700 | 1_1:-76381728 | Msa0044790:five_prime_UTR |
| CGGTTAGGGAAAACTCTGGC+AGG | 0.556791 | 1_1:+76381502 | None:intergenic |
| TAAAATATATGAGGGCTACC+AGG | 0.558010 | 1_1:+76380903 | None:intergenic |
| TTTCAGGTTCTGATGATAGG+AGG | 0.559010 | 1_1:-76381240 | Msa0044790:CDS |
| AACTAATCCATCTTCACCAC+AGG | 0.561313 | 1_1:+76380878 | None:intergenic |
| ATGCAATTGCAATTGATCCA+AGG | 0.567310 | 1_1:-76380682 | Msa0044790:CDS |
| GATCTCTCCAATCGAGAGCT+CGG | 0.567700 | 1_1:-76381532 | Msa0044790:CDS |
| AATGGAAGGAGAGCTTAATA+CGG | 0.568872 | 1_1:+76381191 | None:intergenic |
| TCCACAGATATAGGGGATCC+GGG | 0.571140 | 1_1:+76380407 | None:intergenic |
| CATTGTTACTATGACCGGAA+TGG | 0.571673 | 1_1:+76381173 | None:intergenic |
| TGGTGACCTCGGAGGCGGCA+AGG | 0.573000 | 1_1:+76381479 | None:intergenic |
| TGGTGAGCTTATTCGTGTCA+TGG | 0.573234 | 1_1:-76380180 | Msa0044790:CDS |
| ATATAGGGGATCCGGGAACA+GGG | 0.574240 | 1_1:+76380414 | None:intergenic |
| TATTGGGCAGGCATCAAGGA+CGG | 0.576805 | 1_1:-76380947 | Msa0044790:CDS |
| ATGCATCCCATTTATACTTG+CGG | 0.576913 | 1_1:+76380603 | None:intergenic |
| GAAGGAGAGCTTAATACGGC+CGG | 0.578111 | 1_1:+76381195 | None:intergenic |
| ATCACTATCCACAGATATAG+GGG | 0.580937 | 1_1:+76380400 | None:intergenic |
| GAGAGTAGGAATAACAGGCC+TGG | 0.581169 | 1_1:-76380522 | Msa0044790:CDS |
| GAGGACAAGGATGACGATGA+AGG | 0.585090 | 1_1:-76378577 | Msa0044790:intron |
| TCAGGATGTACAAGAGAGCA+AGG | 0.586055 | 1_1:-76381579 | Msa0044790:exon |
| CAGGAATTGCGAGACAGTGA+AGG | 0.586583 | 1_1:-76380285 | Msa0044790:CDS |
| TACAGTTTGATCTTAGAACT+GGG | 0.587549 | 1_1:-76380775 | Msa0044790:intron |
| CACAGGTGTAAAATATATGA+GGG | 0.591272 | 1_1:+76380895 | None:intergenic |
| TCCCGGATCCCCTATATCTG+TGG | 0.591536 | 1_1:-76380408 | Msa0044790:CDS |
| AATTGTGAGTATGTGGTGAG+TGG | 0.595118 | 1_1:-76380242 | Msa0044790:CDS |
| TAACCGCCTTGCCGCCTCCG+AGG | 0.597290 | 1_1:-76381485 | Msa0044790:intron |
| GTTACTATGACCGGAATGGA+AGG | 0.597527 | 1_1:+76381177 | None:intergenic |
| TCGATTGGAGAGATCGCGAA+GGG | 0.603509 | 1_1:+76381540 | None:intergenic |
| TCATCACCAATCAAGTGCGG+AGG | 0.611799 | 1_1:+76380545 | None:intergenic |
| CTTGCAAGAACTGTTGAATG+AGG | 0.615136 | 1_1:+76380119 | None:intergenic |
| TCCATCATCACCATCATCGT+CGG | 0.616319 | 1_1:+76378198 | None:intergenic |
| TTGATTGGTGATGAGAGAGT+AGG | 0.616553 | 1_1:-76380536 | Msa0044790:CDS |
| GTGTCCTTTGAAAACTTGAG+GGG | 0.617266 | 1_1:+76380307 | None:intergenic |
| ATTGCATTAAGATGGATGAC+TGG | 0.619176 | 1_1:+76380698 | None:intergenic |
| CATCACCAATCAAGTGCGGA+GGG | 0.625108 | 1_1:+76380546 | None:intergenic |
| TCAACAGTTCTTGCAAGCAG+CGG | 0.629518 | 1_1:-76380113 | Msa0044790:CDS |
| GAACCCAAATCTCTTTGCGG+TGG | 0.635615 | 1_1:-76380660 | Msa0044790:CDS |
| AAGGCGGTTAGGGAAAACTC+TGG | 0.635631 | 1_1:+76381498 | None:intergenic |
| TGGCAAAGTAGCTTTCTCGA+GGG | 0.639432 | 1_1:+76380055 | None:intergenic |
| TTCACATGGAAGAAGAAAGG+TGG | 0.640293 | 1_1:-76380200 | Msa0044790:CDS |
| CTCTCATCACCAATCAAGTG+CGG | 0.643418 | 1_1:+76380542 | None:intergenic |
| CTCGATTGGAGAGATCGCGA+AGG | 0.644825 | 1_1:+76381539 | None:intergenic |
| TGAAGAGTGAATCTGAGAGT+GGG | 0.646073 | 1_1:+76381747 | None:intergenic |
| GCTTCTTGAAGATGGACGTG+TGG | 0.646174 | 1_1:-76380979 | Msa0044790:CDS |
| AGGAATTGCGAGACAGTGAA+GGG | 0.648153 | 1_1:-76380284 | Msa0044790:CDS |
| ATTGTGAGTATGTGGTGAGT+GGG | 0.650208 | 1_1:-76380241 | Msa0044790:CDS |
| GTTTGAGAGTGATGATGATG+AGG | 0.650306 | 1_1:-76378713 | Msa0044790:CDS |
| AGTCGGTTGACCAAAATCAG+TGG | 0.651579 | 1_1:+76380580 | None:intergenic |
| ACTGTATGCTTCAATGCAGA+TGG | 0.652391 | 1_1:-76381274 | Msa0044790:CDS |
| TGATGATGATAATGAGGACA+AGG | 0.657785 | 1_1:-76378590 | Msa0044790:CDS |
| GGGGTAAATGGTGACCTCGG+AGG | 0.659923 | 1_1:+76381471 | None:intergenic |
| CATCAAGATATGGACTCCAA+AGG | 0.659996 | 1_1:-76380078 | Msa0044790:CDS |
| GGAGGGCAAAAGTAGTCAGT+CGG | 0.661060 | 1_1:+76380563 | None:intergenic |
| ATGCTACGATCATGGGAGTG+AGG | 0.664363 | 1_1:+76381130 | None:intergenic |
| CGATTGGAGAGATCGCGAAG+GGG | 0.686133 | 1_1:+76381541 | None:intergenic |
| AGTGATACAAGTGAAGCAGG+AGG | 0.688788 | 1_1:-76380383 | Msa0044790:CDS |
| GTGGTGAGTGGGTCAGACTG+TGG | 0.699088 | 1_1:-76380230 | Msa0044790:CDS |
| GAAGAGTGAATCTGAGAGTG+GGG | 0.716943 | 1_1:+76381748 | None:intergenic |
| GTAAATTTACTCTGTTAACG+TGG | 0.720334 | 1_1:+76381800 | None:intergenic |
| TGACCTCGGAGGCGGCAAGG+CGG | 0.722404 | 1_1:+76381482 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGATAATATATGATTTT+TGG | + | chr1_1:76380016-76380035 | None:intergenic | 10.0% |
| !!! | AATTATTTGATTTCGAAAAT+TGG | + | chr1_1:76378552-76378571 | None:intergenic | 15.0% |
| !!! | ATTTTCGAAATCAAATAATT+AGG | - | chr1_1:76378552-76378571 | Msa0044790:intron | 15.0% |
| !!! | TTTTCGAAATCAAATAATTA+GGG | - | chr1_1:76378553-76378572 | Msa0044790:intron | 15.0% |
| !! | TAATTAATTAATCAGATTAC+AGG | + | chr1_1:76378602-76378621 | None:intergenic | 15.0% |
| !! | ATTCTTATTATTATCTCATT+AGG | - | chr1_1:76378931-76378950 | Msa0044790:intron | 15.0% |
| !!! | TTTACATTGTTTTAGTAAAA+GGG | + | chr1_1:76378957-76378976 | None:intergenic | 15.0% |
| !! | TATCTTCAGATTATTTATTT+GGG | + | chr1_1:76380300-76380319 | None:intergenic | 15.0% |
| !! | ATATCTTCAGATTATTTATT+TGG | + | chr1_1:76380301-76380320 | None:intergenic | 15.0% |
| !!! | ATAGAAAACATTACTTTTAT+AGG | + | chr1_1:76380566-76380585 | None:intergenic | 15.0% |
| !! | TCTATTAGAATAATTAATGA+AGG | - | chr1_1:76380581-76380600 | Msa0044790:CDS | 15.0% |
| !! | CTATTAGAATAATTAATGAA+GGG | - | chr1_1:76380582-76380601 | Msa0044790:CDS | 15.0% |
| !!! | TGGTTTAAAATAATCTTTTA+AGG | - | chr1_1:76380763-76380782 | Msa0044790:CDS | 15.0% |
| !! | GATTGATTAATGGAAAAAAA+TGG | + | chr1_1:76378323-76378342 | None:intergenic | 20.0% |
| !! | ATGATTGATTGATTGATTAA+TGG | + | chr1_1:76378333-76378352 | None:intergenic | 20.0% |
| !! | GAAAAGAGTAAAGTTAATTA+GGG | + | chr1_1:76378372-76378391 | None:intergenic | 20.0% |
| !!! | GTTTACATTGTTTTAGTAAA+AGG | + | chr1_1:76378958-76378977 | None:intergenic | 20.0% |
| !!! | CAATGTAAACTATCAATTTT+AGG | - | chr1_1:76378968-76378987 | Msa0044790:intron | 20.0% |
| !! | TATTTATATATCTCTCTAAC+TGG | - | chr1_1:76380232-76380251 | Msa0044790:CDS | 20.0% |
| !! | ATTTATATATCTCTCTAACT+GGG | - | chr1_1:76380233-76380252 | Msa0044790:CDS | 20.0% |
| !! | TTATAGGTAAAAAAATGCTT+TGG | + | chr1_1:76380550-76380569 | None:intergenic | 20.0% |
| ! | TGATTAATGGAAAAAAATGG+TGG | + | chr1_1:76378320-76378339 | None:intergenic | 25.0% |
| ! | GGAAAAGAGTAAAGTTAATT+AGG | + | chr1_1:76378373-76378392 | None:intergenic | 25.0% |
| ! | TTGATGTTATTACGTGATTT+AGG | - | chr1_1:76378627-76378646 | Msa0044790:CDS | 25.0% |
| ! | GATAAAGAACGAAAAACTAT+TGG | + | chr1_1:76379161-76379180 | None:intergenic | 25.0% |
| !! | TTACCTTTTTACACAAGATA+TGG | - | chr1_1:76379533-76379552 | Msa0044790:intron | 25.0% |
| !! | TACCTTTTTACACAAGATAT+GGG | - | chr1_1:76379534-76379553 | Msa0044790:intron | 25.0% |
| ! | TCAATATAGAAATGTTGTGT+TGG | - | chr1_1:76380096-76380115 | Msa0044790:CDS | 25.0% |
| !!! | ATATTGTCCAAAGCTTTTTT+TGG | - | chr1_1:76380317-76380336 | Msa0044790:CDS | 25.0% |
| !! | GTTTTTAATATTTGTGGTGT+GGG | + | chr1_1:76380415-76380434 | None:intergenic | 25.0% |
| !! | GTTGAGGTTTTTAATATTTG+TGG | + | chr1_1:76380421-76380440 | None:intergenic | 25.0% |
| ! | TTATTTGATTATGTAGTCCA+GGG | - | chr1_1:76380482-76380501 | Msa0044790:CDS | 25.0% |
| ! | ACATAATAACAGAAATGACT+CGG | + | chr1_1:76380637-76380656 | None:intergenic | 25.0% |
| !! | AAGGAAAATATCTGATTTTC+TGG | - | chr1_1:76380782-76380801 | Msa0044790:intron | 25.0% |
| ! | GATTAGTAGTGTTTGAATAA+TGG | - | chr1_1:76380834-76380853 | Msa0044790:intron | 25.0% |
| ! | ACCTAAATAACATAATAGCA+AGG | - | chr1_1:76380914-76380933 | Msa0044790:CDS | 25.0% |
| !!! | ACCTTGCTATTATGTTATTT+AGG | + | chr1_1:76380918-76380937 | None:intergenic | 25.0% |
| !!! | TTTAGAAGCGTTTTAAATCA+GGG | + | chr1_1:76381047-76381066 | None:intergenic | 25.0% |
| !!! | ATTTAGAAGCGTTTTAAATC+AGG | + | chr1_1:76381048-76381067 | None:intergenic | 25.0% |
| ! | AAAATTTAATATCCTCGTCT+TGG | - | chr1_1:76381077-76381096 | Msa0044790:intron | 25.0% |
| !! | TGTTAAAATGATGTTGGTTA+AGG | + | chr1_1:76381108-76381127 | None:intergenic | 25.0% |
| !!! | AACCAACATCATTTTAACAT+TGG | - | chr1_1:76381109-76381128 | Msa0044790:CDS | 25.0% |
| ! | TACCAATGTTAAAATGATGT+TGG | + | chr1_1:76381114-76381133 | None:intergenic | 25.0% |
| ! | TCATATTTGATGAAATTCGT+TGG | - | chr1_1:76381248-76381267 | Msa0044790:CDS | 25.0% |
| !! | TGATTATGATGATGATAATG+AGG | - | chr1_1:76381387-76381406 | Msa0044790:intron | 25.0% |
| ! | GATATTAATGAATGTGACAA+AGG | - | chr1_1:76381454-76381473 | Msa0044790:intron | 25.0% |
| ! | GATGATAATAATGATGACAA+TGG | - | chr1_1:76381520-76381539 | Msa0044790:CDS | 25.0% |
| !! | AAAGATGATAATTTTTCTGG+TGG | - | chr1_1:76381544-76381563 | Msa0044790:CDS | 25.0% |
| GTAAATTTACTCTGTTAACG+TGG | + | chr1_1:76378186-76378205 | None:intergenic | 30.0% | |
| ! | TTTACTCTTTTCCTTTTCTC+AGG | - | chr1_1:76378380-76378399 | Msa0044790:intron | 30.0% |
| GAAAACATTGTTACTATGAC+CGG | + | chr1_1:76378818-76378837 | None:intergenic | 30.0% | |
| ! | TCATAGTAACAATGTTTTCC+AGG | - | chr1_1:76378819-76378838 | Msa0044790:intron | 30.0% |
| CACAGGTGTAAAATATATGA+GGG | + | chr1_1:76379091-76379110 | None:intergenic | 30.0% | |
| GATCAAACTGTAAAGATAGT+TGG | + | chr1_1:76379200-76379219 | None:intergenic | 30.0% | |
| TTACAGTTTGATCTTAGAAC+TGG | - | chr1_1:76379207-76379226 | Msa0044790:intron | 30.0% | |
| TACAGTTTGATCTTAGAACT+GGG | - | chr1_1:76379208-76379227 | Msa0044790:intron | 30.0% | |
| TAATTCCAACTATCCTTAAG+TGG | + | chr1_1:76379261-76379280 | None:intergenic | 30.0% | |
| CAATTGCAATTGCATTAAGA+TGG | + | chr1_1:76379296-76379315 | None:intergenic | 30.0% | |
| TTGATATCCGCAAGTATAAA+TGG | - | chr1_1:76379373-76379392 | Msa0044790:intron | 30.0% | |
| TGATATCCGCAAGTATAAAT+GGG | - | chr1_1:76379374-76379393 | Msa0044790:intron | 30.0% | |
| AACCCATATCTTGTGTAAAA+AGG | + | chr1_1:76379539-76379558 | None:intergenic | 30.0% | |
| ! | TTTTACACAAGATATGGGTT+TGG | - | chr1_1:76379539-76379558 | Msa0044790:intron | 30.0% |
| TTTACACAAGATATGGGTTT+GGG | - | chr1_1:76379540-76379559 | Msa0044790:intron | 30.0% | |
| TATCACTATCCACAGATATA+GGG | + | chr1_1:76379587-76379606 | None:intergenic | 30.0% | |
| !! | TGAAGGGTGTTAATTTCTTT+GGG | - | chr1_1:76379715-76379734 | Msa0044790:intron | 30.0% |
| ! | ATTTTCACATGGAAGAAGAA+AGG | - | chr1_1:76379780-76379799 | Msa0044790:intron | 30.0% |
| TTTGCCAAAAAATATTGAGC+AGG | - | chr1_1:76379944-76379963 | Msa0044790:intron | 30.0% | |
| !!! | CATACCTGCTCAATATTTTT+TGG | + | chr1_1:76379951-76379970 | None:intergenic | 30.0% |
| TAACTAGTTCGAAGCATAAA+AGG | + | chr1_1:76380049-76380068 | None:intergenic | 30.0% | |
| AAGATGACCAAAAAAAGCTT+TGG | + | chr1_1:76380327-76380346 | None:intergenic | 30.0% | |
| AGTTCAAGAATATACTAGTC+TGG | - | chr1_1:76380384-76380403 | Msa0044790:CDS | 30.0% | |
| ! | GGTTTTTAATATTTGTGGTG+TGG | + | chr1_1:76380416-76380435 | None:intergenic | 30.0% |
| ATAATCAAATAACCACAGTC+TGG | + | chr1_1:76380474-76380493 | None:intergenic | 30.0% | |
| GTTATTTGATTATGTAGTCC+AGG | - | chr1_1:76380481-76380500 | Msa0044790:CDS | 30.0% | |
| TAGTATGCTTGCTTATTAAC+TGG | - | chr1_1:76380513-76380532 | Msa0044790:CDS | 30.0% | |
| AATGAAGGGTGATTTATTGA+AGG | - | chr1_1:76380596-76380615 | Msa0044790:CDS | 30.0% | |
| TGTGTTCAATACTTCATCAT+AGG | + | chr1_1:76380679-76380698 | None:intergenic | 30.0% | |
| !! | TAGTGTTTGAATAATGGACT+GGG | - | chr1_1:76380840-76380859 | Msa0044790:intron | 30.0% |
| !!! | TTAGAAGCGTTTTAAATCAG+GGG | + | chr1_1:76381046-76381065 | None:intergenic | 30.0% |
| !! | CATCATTTTAACATTGGTAC+TGG | - | chr1_1:76381115-76381134 | Msa0044790:CDS | 30.0% |
| ATTAATGAATGTGACAAAGG+CGG | - | chr1_1:76381457-76381476 | Msa0044790:intron | 30.0% | |
| ! | TGTAATGATGATGACAACAA+TGG | - | chr1_1:76381490-76381509 | Msa0044790:CDS | 30.0% |
| ! | GGCAAAGATGATAATTTTTC+TGG | - | chr1_1:76381541-76381560 | Msa0044790:CDS | 30.0% |
| ATGATAGGAGGATTATTCTC+TGG | - | chr1_1:76378755-76378774 | Msa0044790:intron | 35.0% | |
| TGATAGGAGGATTATTCTCT+GGG | - | chr1_1:76378756-76378775 | Msa0044790:intron | 35.0% | |
| AATGGAAGGAGAGCTTAATA+CGG | + | chr1_1:76378795-76378814 | None:intergenic | 35.0% | |
| TAAAATATATGAGGGCTACC+AGG | + | chr1_1:76379083-76379102 | None:intergenic | 35.0% | |
| CCACAGGTGTAAAATATATG+AGG | + | chr1_1:76379092-76379111 | None:intergenic | 35.0% | |
| ! | CCTCATATATTTTACACCTG+TGG | - | chr1_1:76379089-76379108 | Msa0044790:intron | 35.0% |
| ATTGCATTAAGATGGATGAC+TGG | + | chr1_1:76379288-76379307 | None:intergenic | 35.0% | |
| ATGCAATTGCAATTGATCCA+AGG | - | chr1_1:76379301-76379320 | Msa0044790:intron | 35.0% | |
| ACTTGCGGATATCAAAAAGT+CGG | + | chr1_1:76379368-76379387 | None:intergenic | 35.0% | |
| ATGCATCCCATTTATACTTG+CGG | + | chr1_1:76379383-76379402 | None:intergenic | 35.0% | |
| ATCACTATCCACAGATATAG+GGG | + | chr1_1:76379586-76379605 | None:intergenic | 35.0% | |
| GTATCACTATCCACAGATAT+AGG | + | chr1_1:76379588-76379607 | None:intergenic | 35.0% | |
| ! | TGTGTCCTTTGAAAACTTGA+GGG | + | chr1_1:76379680-76379699 | None:intergenic | 35.0% |
| !! | GTGAAGGGTGTTAATTTCTT+TGG | - | chr1_1:76379714-76379733 | Msa0044790:intron | 35.0% |
| TTGAGCATGACATCAAGATA+TGG | - | chr1_1:76379895-76379914 | Msa0044790:intron | 35.0% | |
| AGAAATGTTGTGTTGGAAAG+AGG | - | chr1_1:76380103-76380122 | Msa0044790:CDS | 35.0% | |
| !! | GCTCTAAAAACAACTGATCT+GGG | + | chr1_1:76380734-76380753 | None:intergenic | 35.0% |
| !! | AGCTCTAAAAACAACTGATC+TGG | + | chr1_1:76380735-76380754 | None:intergenic | 35.0% |
| !!! | GTTTTTAGAGCTCGTGATTT+TGG | - | chr1_1:76380743-76380762 | Msa0044790:CDS | 35.0% |
| !! | GTAGTGTTTGAATAATGGAC+TGG | - | chr1_1:76380839-76380858 | Msa0044790:intron | 35.0% |
| CCTATTTGACCATGTGAAAT+GGG | - | chr1_1:76380863-76380882 | Msa0044790:intron | 35.0% | |
| CTATTTGACCATGTGAAATG+GGG | - | chr1_1:76380864-76380883 | Msa0044790:intron | 35.0% | |
| GTGAGATCATAGTACTTATC+AGG | + | chr1_1:76380989-76381008 | None:intergenic | 35.0% | |
| !! | CTCTGCTGTTACTTTGAAAA+AGG | - | chr1_1:76381222-76381241 | Msa0044790:CDS | 35.0% |
| ! | TGATGATGATAATGAGGACA+AGG | - | chr1_1:76381393-76381412 | Msa0044790:intron | 35.0% |
| ! | AACTGTTTTCACTTCCAAGA+CGG | - | chr1_1:76381668-76381687 | Msa0044790:intron | 35.0% |
| TGAAGAGTGAATCTGAGAGT+GGG | + | chr1_1:76378239-76378258 | None:intergenic | 40.0% | |
| TTGAAGAGTGAATCTGAGAG+TGG | + | chr1_1:76378240-76378259 | None:intergenic | 40.0% | |
| AGGAAACACGAAACACAATC+TGG | - | chr1_1:76378275-76378294 | Msa0044790:CDS | 40.0% | |
| ATGGTGGTTCAATTCAACCT+TGG | + | chr1_1:76378304-76378323 | None:intergenic | 40.0% | |
| ! | CTTTTCCTTTTCTCAGGATC+AGG | - | chr1_1:76378386-76378405 | Msa0044790:intron | 40.0% |
| TACATCCTGATCCTGAGAAA+AGG | + | chr1_1:76378394-76378413 | None:intergenic | 40.0% | |
| AATTGGTAGAGAGAGAGAGA+GGG | + | chr1_1:76378535-76378554 | None:intergenic | 40.0% | |
| AAATTGGTAGAGAGAGAGAG+AGG | + | chr1_1:76378536-76378555 | None:intergenic | 40.0% | |
| AAAAAGCTCGATAAGCACAG+AGG | - | chr1_1:76378676-76378695 | Msa0044790:CDS | 40.0% | |
| ACTGTATGCTTCAATGCAGA+TGG | - | chr1_1:76378709-76378728 | Msa0044790:CDS | 40.0% | |
| !! | TGCTTTCAGGTTCTGATGAT+AGG | - | chr1_1:76378740-76378759 | Msa0044790:CDS | 40.0% |
| !! | TTTCAGGTTCTGATGATAGG+AGG | - | chr1_1:76378743-76378762 | Msa0044790:intron | 40.0% |
| !! | GAGGATTATTCTCTGGGATT+GGG | - | chr1_1:76378762-76378781 | Msa0044790:intron | 40.0% |
| ATTAAGCTCTCCTTCCATTC+CGG | - | chr1_1:76378796-76378815 | Msa0044790:intron | 40.0% | |
| CATTGTTACTATGACCGGAA+TGG | + | chr1_1:76378813-76378832 | None:intergenic | 40.0% | |
| AGTGACAATGCTACGATCAT+GGG | + | chr1_1:76378863-76378882 | None:intergenic | 40.0% | |
| AAGTGACAATGCTACGATCA+TGG | + | chr1_1:76378864-76378883 | None:intergenic | 40.0% | |
| GATTATGCGAGTGAAAGTGA+TGG | + | chr1_1:76378908-76378927 | None:intergenic | 40.0% | |
| ACGTGTGGAAACCAAGTTAT+TGG | - | chr1_1:76379019-76379038 | Msa0044790:intron | 40.0% | |
| CGTGTGGAAACCAAGTTATT+GGG | - | chr1_1:76379020-76379039 | Msa0044790:intron | 40.0% | |
| ! | TTTTACACCTGTGGTGAAGA+TGG | - | chr1_1:76379098-76379117 | Msa0044790:intron | 40.0% |
| AACTAATCCATCTTCACCAC+AGG | + | chr1_1:76379108-76379127 | None:intergenic | 40.0% | |
| !! | GTAAAGATAGTTGGTGAGAG+AGG | + | chr1_1:76379191-76379210 | None:intergenic | 40.0% |
| AAGGAACCCAAATCTCTTTG+CGG | - | chr1_1:76379320-76379339 | Msa0044790:intron | 40.0% | |
| CTTGCGGATATCAAAAAGTC+GGG | + | chr1_1:76379367-76379386 | None:intergenic | 40.0% | |
| !! | TTGATTGGTGATGAGAGAGT+AGG | - | chr1_1:76379447-76379466 | Msa0044790:intron | 40.0% |
| GATGAGAGAGTAGGAATAAC+AGG | - | chr1_1:76379456-76379475 | Msa0044790:intron | 40.0% | |
| AAGCTCCCTTTGTTCAGAAA+AGG | + | chr1_1:76379487-76379506 | None:intergenic | 40.0% | |
| GATAGTGATACAAGTGAAGC+AGG | - | chr1_1:76379597-76379616 | Msa0044790:intron | 40.0% | |
| ACATCAGCATCTGTGTTTGA+TGG | + | chr1_1:76379648-76379667 | None:intergenic | 40.0% | |
| ! | ATTGCCCCTCAAGTTTTCAA+AGG | - | chr1_1:76379672-76379691 | Msa0044790:intron | 40.0% |
| ! | GTGTCCTTTGAAAACTTGAG+GGG | + | chr1_1:76379679-76379698 | None:intergenic | 40.0% |
| ! | CTGTGTCCTTTGAAAACTTG+AGG | + | chr1_1:76379681-76379700 | None:intergenic | 40.0% |
| ! | CTCAAGTTTTCAAAGGACAC+AGG | - | chr1_1:76379679-76379698 | Msa0044790:intron | 40.0% |
| CTCACCACATACTCACAATT+AGG | + | chr1_1:76379741-76379760 | None:intergenic | 40.0% | |
| AATTGTGAGTATGTGGTGAG+TGG | - | chr1_1:76379741-76379760 | Msa0044790:intron | 40.0% | |
| ATTGTGAGTATGTGGTGAGT+GGG | - | chr1_1:76379742-76379761 | Msa0044790:intron | 40.0% | |
| ! | ACTGTGGTCGTATTTTCACA+TGG | - | chr1_1:76379769-76379788 | Msa0044790:intron | 40.0% |
| TTCACATGGAAGAAGAAAGG+TGG | - | chr1_1:76379783-76379802 | Msa0044790:intron | 40.0% | |
| CTTGCAAGAACTGTTGAATG+AGG | + | chr1_1:76379867-76379886 | None:intergenic | 40.0% | |
| CATCAAGATATGGACTCCAA+AGG | - | chr1_1:76379905-76379924 | Msa0044790:intron | 40.0% | |
| TGCACTTACAGCACAAGTTA+AGG | - | chr1_1:76380070-76380089 | Msa0044790:CDS | 40.0% | |
| TTGAGATTGAATGTCAGCCA+GGG | + | chr1_1:76380362-76380381 | None:intergenic | 40.0% | |
| GTTGTAGAGGATAAGAGTTG+AGG | + | chr1_1:76380437-76380456 | None:intergenic | 40.0% | |
| !! | CAAGGGAAGATTTGTTGTAG+AGG | + | chr1_1:76380450-76380469 | None:intergenic | 40.0% |
| AATAACCACAGTCTGGTCAA+GGG | + | chr1_1:76380467-76380486 | None:intergenic | 40.0% | |
| AAATAACCACAGTCTGGTCA+AGG | + | chr1_1:76380468-76380487 | None:intergenic | 40.0% | |
| GCCTATTTGACCATGTGAAA+TGG | - | chr1_1:76380862-76380881 | Msa0044790:intron | 40.0% | |
| CCCATTTCACATGGTCAAAT+AGG | + | chr1_1:76380866-76380885 | None:intergenic | 40.0% | |
| ATAGCAAGGTTTGAACATGC+TGG | - | chr1_1:76380928-76380947 | Msa0044790:CDS | 40.0% | |
| AGTGAACTATTAAGCAGCAG+AGG | - | chr1_1:76381190-76381209 | Msa0044790:CDS | 40.0% | |
| ! | GTTTGAGAGTGATGATGATG+AGG | - | chr1_1:76381270-76381289 | Msa0044790:CDS | 40.0% |
| GATGATGACAACAATGGTGT+TGG | - | chr1_1:76381496-76381515 | Msa0044790:CDS | 40.0% | |
| GTGAAAACAGTTGCAACATC+AGG | + | chr1_1:76381660-76381679 | None:intergenic | 40.0% | |
| GAAGAGTGAATCTGAGAGTG+GGG | + | chr1_1:76378238-76378257 | None:intergenic | 45.0% | |
| TTCAACAACGAACGCATCAC+AGG | - | chr1_1:76378255-76378274 | Msa0044790:CDS | 45.0% | |
| ! | GAAACACAATCTGGCTTCCA+AGG | - | chr1_1:76378284-76378303 | Msa0044790:CDS | 45.0% |
| TCAGGATGTACAAGAGAGCA+AGG | - | chr1_1:76378404-76378423 | Msa0044790:intron | 45.0% | |
| ATTGGTAGAGAGAGAGAGAG+GGG | + | chr1_1:76378534-76378553 | None:intergenic | 45.0% | |
| GATGGTGACATTCTGCTTTC+AGG | - | chr1_1:76378727-76378746 | Msa0044790:CDS | 45.0% | |
| !! | GGAGGATTATTCTCTGGGAT+TGG | - | chr1_1:76378761-76378780 | Msa0044790:intron | 45.0% |
| !! | ATTCTCTGGGATTGGGAAAC+CGG | - | chr1_1:76378769-76378788 | Msa0044790:intron | 45.0% |
| GTTACTATGACCGGAATGGA+AGG | + | chr1_1:76378809-76378828 | None:intergenic | 45.0% | |
| ! | ATTGTCACTTGTGCTGCTGA+TGG | - | chr1_1:76378874-76378893 | Msa0044790:intron | 45.0% |
| !! | GAGTGAAAGTGATGGATACC+TGG | + | chr1_1:76378900-76378919 | None:intergenic | 45.0% |
| CATGCTCAGCTTCTTGAAGA+TGG | - | chr1_1:76378996-76379015 | Msa0044790:intron | 45.0% | |
| TGGAAACCAAGTTATTGGGC+AGG | - | chr1_1:76379024-76379043 | Msa0044790:intron | 45.0% | |
| TTGATGCCTGCCCAATAACT+TGG | + | chr1_1:76379033-76379052 | None:intergenic | 45.0% | |
| AAGTTATTGGGCAGGCATCA+AGG | - | chr1_1:76379032-76379051 | Msa0044790:intron | 45.0% | |
| TTTCACCTGCAAGCCACTTA+AGG | - | chr1_1:76379245-76379264 | Msa0044790:intron | 45.0% | |
| ! | ACTATCCTTAAGTGGCTTGC+AGG | + | chr1_1:76379253-76379272 | None:intergenic | 45.0% |
| GCAAGCCACTTAAGGATAGT+TGG | - | chr1_1:76379253-76379272 | Msa0044790:intron | 45.0% | |
| ! | GCAAAGAGATTTGGGTTCCT+TGG | + | chr1_1:76379321-76379340 | None:intergenic | 45.0% |
| !!! | TGGGATGCATCCACTGATTT+TGG | - | chr1_1:76379393-76379412 | Msa0044790:intron | 45.0% |
| AGTCGGTTGACCAAAATCAG+TGG | + | chr1_1:76379406-76379425 | None:intergenic | 45.0% | |
| CTCTCATCACCAATCAAGTG+CGG | + | chr1_1:76379444-76379463 | None:intergenic | 45.0% | |
| !! | CCTGGCCTTTTCTGAACAAA+GGG | - | chr1_1:76379479-76379498 | Msa0044790:intron | 45.0% |
| ! | ACAAGATATGGGTTTGGGAC+TGG | - | chr1_1:76379545-76379564 | Msa0044790:intron | 45.0% |
| ATCCACAGATATAGGGGATC+CGG | + | chr1_1:76379580-76379599 | None:intergenic | 45.0% | |
| AGTGATACAAGTGAAGCAGG+AGG | - | chr1_1:76379600-76379619 | Msa0044790:intron | 45.0% | |
| AGGAATTGCGAGACAGTGAA+GGG | - | chr1_1:76379699-76379718 | Msa0044790:intron | 45.0% | |
| TGGGCCTAATTGTGAGTATG+TGG | - | chr1_1:76379734-76379753 | Msa0044790:intron | 45.0% | |
| TGGTGAGCTTATTCGTGTCA+TGG | - | chr1_1:76379803-76379822 | Msa0044790:intron | 45.0% | |
| TCAACAGTTCTTGCAAGCAG+CGG | - | chr1_1:76379870-76379889 | Msa0044790:intron | 45.0% | |
| TGGCAAAGTAGCTTTCTCGA+GGG | + | chr1_1:76379931-76379950 | None:intergenic | 45.0% | |
| TTGGCAAAGTAGCTTTCTCG+AGG | + | chr1_1:76379932-76379951 | None:intergenic | 45.0% | |
| TTTCCTTAACAAGTGCCCGT+AGG | - | chr1_1:76380184-76380203 | Msa0044790:CDS | 45.0% | |
| TTCCTTAACAAGTGCCCGTA+GGG | - | chr1_1:76380185-76380204 | Msa0044790:CDS | 45.0% | |
| TCATGCTAACATGTGCCCTA+CGG | + | chr1_1:76380203-76380222 | None:intergenic | 45.0% | |
| ATCTTTCCTCTAACTACCCC+TGG | - | chr1_1:76380342-76380361 | Msa0044790:CDS | 45.0% | |
| TGAGATTGAATGTCAGCCAG+GGG | + | chr1_1:76380361-76380380 | None:intergenic | 45.0% | |
| GTTGAGATTGAATGTCAGCC+AGG | + | chr1_1:76380363-76380382 | None:intergenic | 45.0% | |
| AGCATACTACAACTTTGCCC+TGG | + | chr1_1:76380502-76380521 | None:intergenic | 45.0% | |
| TCTGGCCACAACAGTTCATA+CGG | - | chr1_1:76380800-76380819 | Msa0044790:intron | 45.0% | |
| AATCCCCGTATGAACTGTTG+TGG | + | chr1_1:76380808-76380827 | None:intergenic | 45.0% | |
| !! | GGATTAGTCCCCATTTCACA+TGG | + | chr1_1:76380875-76380894 | None:intergenic | 45.0% |
| GTTAAGGACTTTCCAAGACG+AGG | + | chr1_1:76381092-76381111 | None:intergenic | 45.0% | |
| GATGTACCAGATAGCTTCTC+AGG | - | chr1_1:76381630-76381649 | Msa0044790:intron | 45.0% | |
| ! | TGTTTTCACTTCCAAGACGG+AGG | - | chr1_1:76381671-76381690 | Msa0044790:intron | 45.0% |
| ! | GTTTTCACTTCCAAGACGGA+GGG | - | chr1_1:76381672-76381691 | Msa0044790:intron | 45.0% |
| TCCATCATCACCATCATCGT+CGG | + | chr1_1:76381788-76381807 | None:intergenic | 45.0% | |
| GAAACACGCACGCAGAAGAA+AGG | - | chr1_1:76378211-76378230 | Msa0044790:CDS | 50.0% | |
| TCGATTGGAGAGATCGCGAA+GGG | + | chr1_1:76378446-76378465 | None:intergenic | 50.0% | |
| GATCTCTCCAATCGAGAGCT+CGG | - | chr1_1:76378451-76378470 | Msa0044790:intron | 50.0% | |
| TAAGTGACCGAGCTCTCGAT+TGG | + | chr1_1:76378461-76378480 | None:intergenic | 50.0% | |
| AAGGCGGTTAGGGAAAACTC+TGG | + | chr1_1:76378488-76378507 | None:intergenic | 50.0% | |
| AGAGGGGTAAATGGTGACCT+CGG | + | chr1_1:76378518-76378537 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGGGGTAAA+TGG | + | chr1_1:76378527-76378546 | None:intergenic | 50.0% | |
| GAAGGAGAGCTTAATACGGC+CGG | + | chr1_1:76378791-76378810 | None:intergenic | 50.0% | |
| AGTGAGGCATGAACTTAGCC+TGG | + | chr1_1:76378840-76378859 | None:intergenic | 50.0% | |
| ATGCTACGATCATGGGAGTG+AGG | + | chr1_1:76378856-76378875 | None:intergenic | 50.0% | |
| GCTTCTTGAAGATGGACGTG+TGG | - | chr1_1:76379004-76379023 | Msa0044790:intron | 50.0% | |
| TATTGGGCAGGCATCAAGGA+CGG | - | chr1_1:76379036-76379055 | Msa0044790:intron | 50.0% | |
| ! | TCAAGGACGGGCTCATAAGT+TGG | - | chr1_1:76379049-76379068 | Msa0044790:intron | 50.0% |
| ! | CATAAGTTGGCTATCGAGCC+TGG | - | chr1_1:76379062-76379081 | Msa0044790:intron | 50.0% |
| GAACCCAAATCTCTTTGCGG+TGG | - | chr1_1:76379323-76379342 | Msa0044790:intron | 50.0% | |
| CAGCCACCGCAAAGAGATTT+GGG | + | chr1_1:76379329-76379348 | None:intergenic | 50.0% | |
| CAAATCTCTTTGCGGTGGCT+GGG | - | chr1_1:76379328-76379347 | Msa0044790:intron | 50.0% | |
| GGAGGGCAAAAGTAGTCAGT+CGG | + | chr1_1:76379423-76379442 | None:intergenic | 50.0% | |
| ! | TTTTGCCCTCCGCACTTGAT+TGG | - | chr1_1:76379432-76379451 | Msa0044790:intron | 50.0% |
| CATCACCAATCAAGTGCGGA+GGG | + | chr1_1:76379440-76379459 | None:intergenic | 50.0% | |
| TCATCACCAATCAAGTGCGG+AGG | + | chr1_1:76379441-76379460 | None:intergenic | 50.0% | |
| GAGAGTAGGAATAACAGGCC+TGG | - | chr1_1:76379461-76379480 | Msa0044790:intron | 50.0% | |
| !! | GCCTGGCCTTTTCTGAACAA+AGG | - | chr1_1:76379478-76379497 | Msa0044790:intron | 50.0% |
| CCCTTTGTTCAGAAAAGGCC+AGG | + | chr1_1:76379482-76379501 | None:intergenic | 50.0% | |
| ATATAGGGGATCCGGGAACA+GGG | + | chr1_1:76379572-76379591 | None:intergenic | 50.0% | |
| TCCACAGATATAGGGGATCC+GGG | + | chr1_1:76379579-76379598 | None:intergenic | 50.0% | |
| CAGGAATTGCGAGACAGTGA+AGG | - | chr1_1:76379698-76379717 | Msa0044790:intron | 50.0% | |
| CATGCTAACATGTGCCCTAC+GGG | + | chr1_1:76380202-76380221 | None:intergenic | 50.0% | |
| ATCTTCCCTTGACCAGACTG+TGG | - | chr1_1:76380459-76380478 | Msa0044790:CDS | 50.0% | |
| CACACACACACACACACACA+CGG | - | chr1_1:76380695-76380714 | Msa0044790:CDS | 50.0% | |
| ACACACACACACACACACAC+GGG | - | chr1_1:76380694-76380713 | Msa0044790:CDS | 50.0% | |
| CTGGCCACAACAGTTCATAC+GGG | - | chr1_1:76380801-76380820 | Msa0044790:intron | 50.0% | |
| TGGCCACAACAGTTCATACG+GGG | - | chr1_1:76380802-76380821 | Msa0044790:intron | 50.0% | |
| GACTAATCCAGACAGCAGCA+CGG | - | chr1_1:76380886-76380905 | Msa0044790:CDS | 50.0% | |
| AGGTTTGAACATGCTGGCCA+TGG | - | chr1_1:76380934-76380953 | Msa0044790:CDS | 50.0% | |
| GGTTTGAACATGCTGGCCAT+GGG | - | chr1_1:76380935-76380954 | Msa0044790:CDS | 50.0% | |
| GTTTGAACATGCTGGCCATG+GGG | - | chr1_1:76380936-76380955 | Msa0044790:CDS | 50.0% | |
| GAGGACAAGGATGACGATGA+AGG | - | chr1_1:76381406-76381425 | Msa0044790:intron | 50.0% | |
| GGTCTTCCTGAGAAGCTATC+TGG | + | chr1_1:76381639-76381658 | None:intergenic | 50.0% | |
| GACGATTCTACCGACGATGA+TGG | - | chr1_1:76381775-76381794 | Msa0044790:five_prime_UTR | 50.0% | |
| ! | ACCGACGATGATGGTGATGA+TGG | - | chr1_1:76381784-76381803 | Msa0044790:five_prime_UTR | 50.0% |
| AGAGATCGCGAAGGGGTTTG+TGG | + | chr1_1:76378438-76378457 | None:intergenic | 55.0% | |
| CGATTGGAGAGATCGCGAAG+GGG | + | chr1_1:76378445-76378464 | None:intergenic | 55.0% | |
| CTCGATTGGAGAGATCGCGA+AGG | + | chr1_1:76378447-76378466 | None:intergenic | 55.0% | |
| CGGTTAGGGAAAACTCTGGC+AGG | + | chr1_1:76378484-76378503 | None:intergenic | 55.0% | |
| GTAAATGGTGACCTCGGAGG+CGG | + | chr1_1:76378512-76378531 | None:intergenic | 55.0% | |
| ATTGGGCAGGCATCAAGGAC+GGG | - | chr1_1:76379037-76379056 | Msa0044790:intron | 55.0% | |
| CCAGCCACCGCAAAGAGATT+TGG | + | chr1_1:76379330-76379349 | None:intergenic | 55.0% | |
| CCAAATCTCTTTGCGGTGGC+TGG | - | chr1_1:76379327-76379346 | Msa0044790:intron | 55.0% | |
| GATATAGGGGATCCGGGAAC+AGG | + | chr1_1:76379573-76379592 | None:intergenic | 55.0% | |
| TCCCGGATCCCCTATATCTG+TGG | - | chr1_1:76379575-76379594 | Msa0044790:intron | 55.0% | |
| AGTGAAGCAGGAGGCAGTCA+TGG | - | chr1_1:76379609-76379628 | Msa0044790:intron | 55.0% | |
| GTAGCTTTCTCGAGGGCCTT+TGG | + | chr1_1:76379924-76379943 | None:intergenic | 55.0% | |
| ! | TGCCCTACGGGCACTTGTTA+AGG | + | chr1_1:76380190-76380209 | None:intergenic | 55.0% |
| TGTCAGCCAGGGGTAGTTAG+AGG | + | chr1_1:76380351-76380370 | None:intergenic | 55.0% | |
| ! | GTCTTAACCGTGCTGCTGTC+TGG | + | chr1_1:76380896-76380915 | None:intergenic | 55.0% |
| GTGTGTCCGACAGAAACCCA+AGG | - | chr1_1:76381597-76381616 | Msa0044790:intron | 55.0% | |
| TCCGACAGAAACCCAAGGCT+AGG | - | chr1_1:76381602-76381621 | Msa0044790:intron | 55.0% | |
| !! | CCCTAGCCTTGGGTTTCTGT+CGG | + | chr1_1:76381606-76381625 | None:intergenic | 55.0% |
| CCGACAGAAACCCAAGGCTA+GGG | - | chr1_1:76381603-76381622 | Msa0044790:intron | 55.0% | |
| CGACAGAAACCCAAGGCTAG+GGG | - | chr1_1:76381604-76381623 | Msa0044790:intron | 55.0% | |
| ! | TACATCCAGCCCCTAGCCTT+GGG | + | chr1_1:76381616-76381635 | None:intergenic | 55.0% |
| GGGGTAAATGGTGACCTCGG+AGG | + | chr1_1:76378515-76378534 | None:intergenic | 60.0% | |
| ! | CACTTGTGCTGCTGATGGCC+AGG | - | chr1_1:76378879-76378898 | Msa0044790:intron | 60.0% |
| TTGGGACTGGACCCTGTTCC+CGG | - | chr1_1:76379558-76379577 | Msa0044790:intron | 60.0% | |
| GTGGTGAGTGGGTCAGACTG+TGG | - | chr1_1:76379753-76379772 | Msa0044790:intron | 60.0% | |
| ACATGCTGGCCATGGGGAGT+TGG | - | chr1_1:76380942-76380961 | Msa0044790:CDS | 60.0% | |
| CATGCTGGCCATGGGGAGTT+GGG | - | chr1_1:76380943-76380962 | Msa0044790:CDS | 60.0% | |
| AACACCCACCCAACTCCCCA+TGG | + | chr1_1:76380954-76380973 | None:intergenic | 60.0% | |
| AGAAACCCAAGGCTAGGGGC+TGG | - | chr1_1:76381608-76381627 | Msa0044790:intron | 60.0% | |
| GTACATCCAGCCCCTAGCCT+TGG | + | chr1_1:76381617-76381636 | None:intergenic | 60.0% | |
| CACTTCCAAGACGGAGGGCT+AGG | - | chr1_1:76381677-76381696 | Msa0044790:intron | 60.0% | |
| TCTGTCCTAGCCCTCCGTCT+TGG | + | chr1_1:76381685-76381704 | None:intergenic | 60.0% | |
| CTGGCCATGGGGAGTTGGGT+GGG | - | chr1_1:76380947-76380966 | Msa0044790:CDS | 65.0% | |
| CGGAGGCGGCAAGGCGGTTA+GGG | + | chr1_1:76378498-76378517 | None:intergenic | 70.0% | |
| TCGGAGGCGGCAAGGCGGTT+AGG | + | chr1_1:76378499-76378518 | None:intergenic | 70.0% | |
| TAACCGCCTTGCCGCCTCCG+AGG | - | chr1_1:76378498-76378517 | Msa0044790:intron | 70.0% | |
| TGACCTCGGAGGCGGCAAGG+CGG | + | chr1_1:76378504-76378523 | None:intergenic | 70.0% | |
| TGGTGACCTCGGAGGCGGCA+AGG | + | chr1_1:76378507-76378526 | None:intergenic | 70.0% | |
| GCTGGCCATGGGGAGTTGGG+TGG | - | chr1_1:76380946-76380965 | Msa0044790:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76378165 | 76381840 | 76378165 | ID=Msa0044790;Name=Msa0044790 |
| chr1_1 | mRNA | 76378165 | 76381840 | 76378165 | ID=Msa0044790-mRNA-1;Parent=Msa0044790;Name=Msa0044790-mRNA-1;_AED=0.21;_eAED=0.21;_QI=148|0.83|0.71|1|0.83|0.85|7|0|546 |
| chr1_1 | exon | 76378165 | 76378361 | 76378165 | ID=Msa0044790-mRNA-1:exon:25933;Parent=Msa0044790-mRNA-1 |
| chr1_1 | exon | 76378578 | 76378761 | 76378578 | ID=Msa0044790-mRNA-1:exon:25932;Parent=Msa0044790-mRNA-1 |
| chr1_1 | exon | 76380040 | 76380792 | 76380040 | ID=Msa0044790-mRNA-1:exon:25931;Parent=Msa0044790-mRNA-1 |
| chr1_1 | exon | 76380872 | 76381015 | 76380872 | ID=Msa0044790-mRNA-1:exon:25930;Parent=Msa0044790-mRNA-1 |
| chr1_1 | exon | 76381105 | 76381356 | 76381105 | ID=Msa0044790-mRNA-1:exon:25929;Parent=Msa0044790-mRNA-1 |
| chr1_1 | exon | 76381486 | 76381603 | 76381486 | ID=Msa0044790-mRNA-1:exon:25928;Parent=Msa0044790-mRNA-1 |
| chr1_1 | exon | 76381700 | 76381840 | 76381700 | ID=Msa0044790-mRNA-1:exon:25927;Parent=Msa0044790-mRNA-1 |
| chr1_1 | five_prime_UTR | 76381700 | 76381840 | 76381700 | ID=Msa0044790-mRNA-1:five_prime_utr;Parent=Msa0044790-mRNA-1 |
| chr1_1 | five_prime_UTR | 76381597 | 76381603 | 76381597 | ID=Msa0044790-mRNA-1:five_prime_utr;Parent=Msa0044790-mRNA-1 |
| chr1_1 | CDS | 76381486 | 76381596 | 76381486 | ID=Msa0044790-mRNA-1:cds;Parent=Msa0044790-mRNA-1 |
| chr1_1 | CDS | 76381105 | 76381356 | 76381105 | ID=Msa0044790-mRNA-1:cds;Parent=Msa0044790-mRNA-1 |
| chr1_1 | CDS | 76380872 | 76381015 | 76380872 | ID=Msa0044790-mRNA-1:cds;Parent=Msa0044790-mRNA-1 |
| chr1_1 | CDS | 76380040 | 76380792 | 76380040 | ID=Msa0044790-mRNA-1:cds;Parent=Msa0044790-mRNA-1 |
| chr1_1 | CDS | 76378578 | 76378761 | 76378578 | ID=Msa0044790-mRNA-1:cds;Parent=Msa0044790-mRNA-1 |
| chr1_1 | CDS | 76378165 | 76378361 | 76378165 | ID=Msa0044790-mRNA-1:cds;Parent=Msa0044790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
