AlfalfaGEDB | Msa0044950

M. sativa cultivar zhongmu-4 / Msa0044950

KEGG: K04365
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF01842.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044950	XP_003592688.2	97.256	583	14	1	1	583	1	581	0.0	1172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044950	sp\|F4JTP5\|STY46_ARATH	68.591	589	162	8	4	583	1	575	0.0	780

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044950	Msa0068980	0.987210	1.914662e-169	-8.615850e-47
Msa0044950	Msa0183100	0.978708	2.153680e-146	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044950	MtrunA17_Chr1g0211611	97.256	583	14	1	1	583	1	581	0.0	1172
Msa0044950	MtrunA17_Chr5g0406251	67.354	582	179	5	4	583	2	574	0.0	801
Msa0044950	MtrunA17_Chr1g0202101	50.654	535	238	7	23	548	10	527	1.26e-170	495
Msa0044950	MtrunA17_Chr1g0157231	55.679	361	123	4	188	515	1	357	9.42e-136	400
Msa0044950	MtrunA17_Chr3g0143531	68.872	257	80	0	303	559	25	281	5.73e-134	392
Msa0044950	MtrunA17_Chr3g0090261	44.610	269	144	3	296	559	75	343	5.94e-82	261
Msa0044950	MtrunA17_Chr4g0075541	42.424	264	147	2	296	554	80	343	1.78e-78	253
Msa0044950	MtrunA17_Chr3g0117731	41.367	278	158	2	287	559	41	318	4.26e-78	251
Msa0044950	MtrunA17_Chr2g0282321	40.364	275	157	2	296	563	154	428	2.37e-75	247
Msa0044950	MtrunA17_Chr4g0059121	41.606	274	153	3	287	554	42	314	2.42e-75	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044950	AT4G38470.2	70.000	560	150	6	4	559	1	546	0.0	783
Msa0044950	AT4G38470.1	68.591	589	162	8	4	583	1	575	0.0	780
Msa0044950	AT4G35780.1	64.151	583	193	9	2	582	1	569	0.0	747
Msa0044950	AT4G38470.3	69.844	514	137	6	4	513	1	500	0.0	713
Msa0044950	AT2G17700.1	63.309	556	185	7	7	560	5	543	0.0	692
Msa0044950	AT4G31170.7	45.556	270	140	3	296	559	124	392	1.66e-83	267
Msa0044950	AT4G31170.6	45.556	270	140	3	296	559	124	392	1.66e-83	267
Msa0044950	AT4G31170.5	45.556	270	140	3	296	559	124	392	1.66e-83	267
Msa0044950	AT4G31170.1	45.556	270	140	3	296	559	124	392	1.66e-83	267
Msa0044950	AT4G31170.2	45.556	270	140	3	296	559	124	392	1.66e-83	267

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Find 158 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTTTCTGCTTATGT+AGG	0.464870	1_1:-76607878	None:intergenic
AAAACTAAGGAATGTGTCAT+TGG	0.460687	1_1:-76610954	None:intergenic
AAAAGAAGTCTTGAAGATTG+AGG	0.557615	1_1:+76606786	Msa0044950:CDS
AAAATGACCGTGAAGGAAGA+CGG	0.625674	1_1:-76603541	None:intergenic
AAAATGTCATTGTAAAACTA+AGG	0.483897	1_1:-76610967	None:intergenic
AAACTTCGGATGAGTGCTCT+TGG	0.419845	1_1:-76609495	None:intergenic
AAATGATGGGACAGATGTTT+GGG	0.389553	1_1:+76606992	Msa0044950:CDS
AACAAAGTTGTGGACGTCGT+CGG	0.533777	1_1:-76610813	None:intergenic
AACATATCAGAGTTTATGTC+CGG	0.466290	1_1:+76607837	Msa0044950:intron
AACGAAGAAGCTATGCAACC+TGG	0.576824	1_1:+76603488	Msa0044950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTACAATAAAATTCTCCGT+CGG	+	chr1_1:76603450-76603469	Msa0044950:CDS	30.0%
ACAGAACATTCACAAAGAAA+TGG	-	chr1_1:76603604-76603623	None:intergenic	30.0%
CACAAAATAAATTGCTCCAA+AGG	-	chr1_1:76604331-76604350	None:intergenic	30.0%
CTTAACAAGAGACAATTTAG+AGG	-	chr1_1:76604979-76604998	None:intergenic	30.0%
CATTGTTCAAAGATATTTCC+AGG	-	chr1_1:76605565-76605584	None:intergenic	30.0%
TACTTATCCTTTCTTTCATG+TGG	+	chr1_1:76605600-76605619	Msa0044950:intron	30.0%
ACTTATCCTTTCTTTCATGT+GGG	+	chr1_1:76605601-76605620	Msa0044950:intron	30.0%
CAATCATACTAGTATCTCTT+TGG	+	chr1_1:76605687-76605706	Msa0044950:intron	30.0%
AGGTTTGTAATGTAGATGAT+TGG	-	chr1_1:76605787-76605806	None:intergenic	30.0%
GTCTATTTAAGCTTGAATGA+TGG	+	chr1_1:76605830-76605849	Msa0044950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	76603274	76611052	76603274	ID=Msa0044950;Name=Msa0044950
chr1_1	mRNA	76603274	76611052	76603274	ID=Msa0044950-mRNA-1;Parent=Msa0044950;Name=Msa0044950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=61\|1\|1\|1\|1\|1\|16\|249\|583
chr1_1	exon	76603274	76603555	76603274	ID=Msa0044950-mRNA-1:exon:26058;Parent=Msa0044950-mRNA-1
chr1_1	exon	76603938	76604052	76603938	ID=Msa0044950-mRNA-1:exon:26059;Parent=Msa0044950-mRNA-1
chr1_1	exon	76605127	76605227	76605127	ID=Msa0044950-mRNA-1:exon:26060;Parent=Msa0044950-mRNA-1
chr1_1	exon	76605405	76605524	76605405	ID=Msa0044950-mRNA-1:exon:26061;Parent=Msa0044950-mRNA-1
chr1_1	exon	76605966	76606020	76605966	ID=Msa0044950-mRNA-1:exon:26062;Parent=Msa0044950-mRNA-1
chr1_1	exon	76606305	76606415	76606305	ID=Msa0044950-mRNA-1:exon:26063;Parent=Msa0044950-mRNA-1
chr1_1	exon	76606757	76606807	76606757	ID=Msa0044950-mRNA-1:exon:26064;Parent=Msa0044950-mRNA-1
chr1_1	exon	76606900	76607075	76606900	ID=Msa0044950-mRNA-1:exon:26065;Parent=Msa0044950-mRNA-1
chr1_1	exon	76607185	76607292	76607185	ID=Msa0044950-mRNA-1:exon:26066;Parent=Msa0044950-mRNA-1
chr1_1	exon	76607666	76607739	76607666	ID=Msa0044950-mRNA-1:exon:26067;Parent=Msa0044950-mRNA-1
chr1_1	exon	76607847	76608022	76607847	ID=Msa0044950-mRNA-1:exon:26068;Parent=Msa0044950-mRNA-1
chr1_1	exon	76608244	76608339	76608244	ID=Msa0044950-mRNA-1:exon:26069;Parent=Msa0044950-mRNA-1
chr1_1	exon	76609100	76609180	76609100	ID=Msa0044950-mRNA-1:exon:26070;Parent=Msa0044950-mRNA-1
chr1_1	exon	76609269	76609322	76609269	ID=Msa0044950-mRNA-1:exon:26071;Parent=Msa0044950-mRNA-1
chr1_1	exon	76609476	76609610	76609476	ID=Msa0044950-mRNA-1:exon:26072;Parent=Msa0044950-mRNA-1
chr1_1	exon	76610726	76611052	76610726	ID=Msa0044950-mRNA-1:exon:26073;Parent=Msa0044950-mRNA-1
chr1_1	five_prime_UTR	76603274	76603334	76603274	ID=Msa0044950-mRNA-1:five_prime_utr;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76603335	76603555	76603335	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76603938	76604052	76603938	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76605127	76605227	76605127	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76605405	76605524	76605405	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76605966	76606020	76605966	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76606305	76606415	76606305	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76606757	76606807	76606757	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76606900	76607075	76606900	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76607185	76607292	76607185	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76607666	76607739	76607666	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76607847	76608022	76607847	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76608244	76608339	76608244	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76609100	76609180	76609100	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76609269	76609322	76609269	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76609476	76609610	76609476	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	CDS	76610726	76610803	76610726	ID=Msa0044950-mRNA-1:cds;Parent=Msa0044950-mRNA-1
chr1_1	three_prime_UTR	76610804	76611052	76610804	ID=Msa0044950-mRNA-1:three_prime_utr;Parent=Msa0044950-mRNA-1

Gene Sequence

>Msa0044950

ATGGTGACGGTGGCTATGGAAGACAACGAGAGCTGCGGCAGCGGAATACACCACCGCACGTCGTCCTCGTCATCAATTCCGGCGCAAAGTCGGCAACAGCGGCAAAAAGTGGAAGTGTACAATAAAATTCTCCGTCGGCTTAAAGATTCCGGCAACGAAGAAGCTATGCAACCTGGCTTCGATGATCAGCTTTGGACTCACTTCAACCGTCTTCCTTCACGGTATGCATTAGATGTGAATGTGGAAAGAGCAGAAGATGTACTTATGCATAAGAGATTACTACATTTAGCACATGATCCTGATAATAGGCCTTCGATTGAAGTTCGCTTAGTTCAGCTTCATCCCTCATTTGATGGAAACTCAGCCGACTCTTTCCAACCATATGCTCCTGGGGTAGATTCTGGTCAAAGCTCTTCAAAGTACTCAAGCAAACAAGGTATACATCCACCTCCTGCATTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGATTCTGAAGACTTGGAAGAGGAACGATCTGTACATGCCAGTGTGCAATATTCACGGCCCATGCATGAAATCACCTTCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATTCAAGAGGCACATGCTTTTTCCACAACTGATGGGTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAGAAGCTAAAAGAAACTTTGGAAAAAGAAGTCTTGAAGATTGAGAGGCGTGAGAGGTCCAGTCAGCAATCAGTATCATCTGTTGACGAGTGCGATCAATCAAGGATTAAAAATGAACTGGATCGTTTTACAATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCCAAACATTTGAAATATGGAACTCAAATTGCATCTGCGTCATACGGTGAACTATATAAAGGTATATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGGCTGAGCATGTTAGTTCAGAAATGCAGAGGGAGTTTGCACAGGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATGGGAGCATGTACCCAGCCCCCACGCTTATGCATAGTTACAGAGTTTATGTCCGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAAGGGTTTTTTAAATTTCCTACCGTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAACTACCTGCACCAACATAACATAATCCACAGAGACTTGAAGGCTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTCGCCGATTTTGGTGTTGCTAGAGTGAGAGCTCAATCTGGAGTTATGACAGCAGAAACTGGGACATATCGTTGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCGGATGTATTTAGTTTTGGAGTTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCGTATGAATTTTTGACCCCTCTACAGGCAGCTATAGGAGTGGTTCAGAAGGGTTTACGGCCCACCATCCCCAAGAGCACTCATCCGAAGTTTGTTCAGCTTCTTGAGAAATCCTGGCAGCAAGATCCAACTTTAAGACCTGATTTCTCAGAAATCATCGAGAGCCTGCAGCAGTTAGCTAAGGAGGTTGGAGATGAAGGAGAGGAGCGGCGCAGGGATAAATCTGGAGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA

Protein sequence

>Msa0044950

MVTVAMEDNESCGSGIHHRTSSSSSIPAQSRQQRQKVEVYNKILRRLKDSGNEEAMQPGFDDQLWTHFNRLPSRYALDVNVERAEDVLMHKRLLHLAHDPDNRPSIEVRLVQLHPSFDGNSADSFQPYAPGVDSGQSSSKYSSKQGIHPPPAFGSSPNLEALALEENDSEDLEEERSVHASVQYSRPMHEITFSTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKETLEKEVLKIERRERSSQQSVSSVDECDQSRIKNELDRFTIPNDGTDVWEIDPKHLKYGTQIASASYGELYKGIYCSQEVAIKVLKAEHVSSEMQREFAQEVYIMRKVRHKNVVQFMGACTQPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTVLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENGVVKVADFGVARVRAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEFLTPLQAAIGVVQKGLRPTIPKSTHPKFVQLLEKSWQQDPTLRPDFSEIIESLQQLAKEVGDEGEERRRDKSGGFLSVLRRGHH*