AlfalfaGEDB | Msa0046070

M. sativa cultivar zhongmu-4 / Msa0046070

KEGG: K02218
GO: -
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046070	sp\|Q852L0\|HD16N_ORYSJ	66.250	720	191	9	1	681	1	707	0.0	966

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046070	G7IF37	98.682	683	0	3	1	681	1	676	0.0	1391

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046070	Msa0437770	0.915535	5.248245e-85	-8.615850e-47
Msa0046070	Msa0793080	0.907494	4.769102e-81	-8.615850e-47
Msa0046070	Msa1373370	0.938055	1.264726e-98	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046070	MtrunA17_Chr1g0213321	98.682	683	0	3	1	681	1	676	0.0	1391
Msa0046070	MtrunA17_Chr7g0214531	85.572	603	78	2	84	681	1	599	0.0	1105
Msa0046070	MtrunA17_Chr1g0146301	71.342	663	179	4	22	680	28	683	0.0	995
Msa0046070	MtrunA17_Chr7g0253211	66.528	720	190	5	1	681	178	885	0.0	985
Msa0046070	MtrunA17_Chr3g0140431	75.125	599	142	3	86	680	2	597	0.0	969
Msa0046070	MtrunA17_Chr8g0340491	70.439	592	165	4	96	680	102	690	0.0	880
Msa0046070	MtrunA17_Chr4g0071031	37.770	278	161	5	124	398	9	277	1.02e-57	202
Msa0046070	MtrunA17_Chr2g0329981	37.770	278	161	5	124	398	9	277	1.45e-57	202
Msa0046070	MtrunA17_Chr1g0166821	38.028	284	162	6	118	398	6	278	1.36e-56	199
Msa0046070	MtrunA17_Chr8g0342821	37.956	274	157	6	124	394	9	272	6.85e-56	197

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046070	AT3G13670.1	73.684	684	158	6	9	680	29	702	0.0	1047
Msa0046070	AT5G18190.2	66.619	701	204	7	1	681	1	691	0.0	969
Msa0046070	AT5G18190.1	66.619	701	204	7	1	681	1	691	0.0	969
Msa0046070	AT2G25760.1	65.657	693	204	7	1	680	1	672	0.0	968
Msa0046070	AT3G03940.1	66.006	706	210	6	1	681	1	701	0.0	964
Msa0046070	AT2G25760.2	65.517	696	203	9	1	680	1	675	0.0	961
Msa0046070	AT3G03930.1	65.833	240	82	0	441	680	48	287	2.12e-117	353
Msa0046070	AT4G28860.2	39.100	289	159	8	114	398	2	277	6.37e-58	201
Msa0046070	AT4G28860.1	39.100	289	159	8	114	398	2	277	2.55e-57	200
Msa0046070	AT4G28880.3	39.100	289	159	8	114	398	2	277	4.88e-57	199

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 225 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAACATACCTCGA+CGG	0.677481	1_1:-78080526	None:intergenic
AAACATACCTCGACGGCTCC+TGG	0.474817	1_1:-78080519	None:intergenic
AAACTTGGTAAAGGTGGATT+TGG	0.339810	1_1:+78080459	Msa0046070:CDS
AAAGAAAACCTAAACATGTC+GGG	0.437751	1_1:-78082446	None:intergenic
AAAGTAAAGCATGCAATAAA+AGG	0.239062	1_1:-78085534	None:intergenic
AAATGCACCAGGAGCCGTCG+AGG	0.664220	1_1:+78080512	Msa0046070:CDS
AAATTGTTTCTTGTTGACCT+TGG	0.513818	1_1:+78082267	Msa0046070:CDS
AACAGTAAAGGTTGCAACTA+TGG	0.325296	1_1:+78080653	Msa0046070:CDS
AACCATTATCCCAACGTTTA+TGG	0.104765	1_1:-78085105	None:intergenic
AACGTTGGGATAATGGTTAT+AGG	0.420827	1_1:+78085110	Msa0046070:CDS

Showing 1 to 10 of 225 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTCAGTGCTAATAAAGATA+AGG	+	chr1_1:78080192-78080211	Msa0046070:CDS	30.0%
TTAGTGTTCTTAACGACTTA+TGG	+	chr1_1:78080376-78080395	Msa0046070:intron	30.0%
AACATAAACAAACACAAGAG+AGG	-	chr1_1:78080561-78080580	None:intergenic	30.0%
GTTTATGTTACCTTCTGATT+TGG	+	chr1_1:78080572-78080591	Msa0046070:intron	30.0%
ATTAAGAACTAACAACAACC+CGG	-	chr1_1:78080952-78080971	None:intergenic	30.0%
CTTCCTTTATAGTGTACTTT+AGG	-	chr1_1:78081057-78081076	None:intergenic	30.0%
ACAAGGAGAATATTATGTGA+TGG	+	chr1_1:78081077-78081096	Msa0046070:CDS	30.0%
ATTAAGTTTATACTCACGAC+TGG	-	chr1_1:78081230-78081249	None:intergenic	30.0%
TATTCACTTAACCATGTCTT+TGG	-	chr1_1:78081410-78081429	None:intergenic	30.0%
TATACTTTAATTGTCTCCGA+CGG	+	chr1_1:78081591-78081610	Msa0046070:intron	30.0%

Showing 1 to 10 of 479 entries

Previous1 2 3 4 5…48Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	78079656	78085718	78079656	ID=Msa0046070;Name=Msa0046070
chr1_1	mRNA	78079656	78085718	78079656	ID=Msa0046070-mRNA-1;Parent=Msa0046070;Name=Msa0046070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=267\|1\|1\|1\|1\|1\|16\|320\|681
chr1_1	exon	78079656	78080267	78079656	ID=Msa0046070-mRNA-1:exon:26749;Parent=Msa0046070-mRNA-1
chr1_1	exon	78080420	78080533	78080420	ID=Msa0046070-mRNA-1:exon:26750;Parent=Msa0046070-mRNA-1
chr1_1	exon	78080629	78080702	78080629	ID=Msa0046070-mRNA-1:exon:26751;Parent=Msa0046070-mRNA-1
chr1_1	exon	78081029	78081098	78081029	ID=Msa0046070-mRNA-1:exon:26752;Parent=Msa0046070-mRNA-1
chr1_1	exon	78081177	78081232	78081177	ID=Msa0046070-mRNA-1:exon:26753;Parent=Msa0046070-mRNA-1
chr1_1	exon	78081971	78082042	78081971	ID=Msa0046070-mRNA-1:exon:26754;Parent=Msa0046070-mRNA-1
chr1_1	exon	78082200	78082294	78082200	ID=Msa0046070-mRNA-1:exon:26755;Parent=Msa0046070-mRNA-1
chr1_1	exon	78082393	78082459	78082393	ID=Msa0046070-mRNA-1:exon:26756;Parent=Msa0046070-mRNA-1
chr1_1	exon	78082591	78082720	78082591	ID=Msa0046070-mRNA-1:exon:26757;Parent=Msa0046070-mRNA-1
chr1_1	exon	78082812	78083030	78082812	ID=Msa0046070-mRNA-1:exon:26758;Parent=Msa0046070-mRNA-1
chr1_1	exon	78083144	78083274	78083144	ID=Msa0046070-mRNA-1:exon:26759;Parent=Msa0046070-mRNA-1
chr1_1	exon	78083403	78083577	78083403	ID=Msa0046070-mRNA-1:exon:26760;Parent=Msa0046070-mRNA-1
chr1_1	exon	78083664	78083754	78083664	ID=Msa0046070-mRNA-1:exon:26761;Parent=Msa0046070-mRNA-1
chr1_1	exon	78084834	78084991	78084834	ID=Msa0046070-mRNA-1:exon:26762;Parent=Msa0046070-mRNA-1
chr1_1	exon	78085067	78085255	78085067	ID=Msa0046070-mRNA-1:exon:26763;Parent=Msa0046070-mRNA-1
chr1_1	exon	78085339	78085718	78085339	ID=Msa0046070-mRNA-1:exon:26764;Parent=Msa0046070-mRNA-1
chr1_1	five_prime_UTR	78079656	78079922	78079656	ID=Msa0046070-mRNA-1:five_prime_utr;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78079923	78080267	78079923	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78080420	78080533	78080420	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78080629	78080702	78080629	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78081029	78081098	78081029	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78081177	78081232	78081177	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78081971	78082042	78081971	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78082200	78082294	78082200	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78082393	78082459	78082393	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78082591	78082720	78082591	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78082812	78083030	78082812	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78083144	78083274	78083144	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78083403	78083577	78083403	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78083664	78083754	78083664	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78084834	78084991	78084834	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78085067	78085255	78085067	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	CDS	78085339	78085398	78085339	ID=Msa0046070-mRNA-1:cds;Parent=Msa0046070-mRNA-1
chr1_1	three_prime_UTR	78085399	78085718	78085399	ID=Msa0046070-mRNA-1:three_prime_utr;Parent=Msa0046070-mRNA-1

Gene Sequence

>Msa0046070

ATGCCTCAGCTTCGTAGTGGTGTTCGACGTCCTCGTCCTGCTGCTCCTTCTCCTCCTCCGCCACCCAAGCCGGCCACCAGAGGTAGACCCAGAACTAGATTAGCCGCCGCCAAGAACATCAACAAATCATCCCAGGAGGAGGACCCACCGCCGTTGTTATTACAACCTGATACTTTCGTTGTTGAACCTCCCAAAGAGAACATAGTAATTGAACAAGAAGAAGAAGAAGAAGAAGAAGCTGTTGGTGTGATGGGTGATGAAAGAGTTGGTCTCAGTGCTAATAAAGATAAGGCTGTTGCTGCTGTTCCCGAGGAAGATGCCAACTCTCCACCTCTTCCAGAGAGGGTTCAAGTAGGAGGATCGCCTCTATACAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGCCAGGTTTTTGTTGGCCGTCGTGAGCGTGCAAATGCACCAGGAGCCGTCGAGGTTGCTCTGAAATTTGAACATAGAAACAGTAAAGGTTGCAACTATGGCCCTCCTTATGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGCCAGTCGATGTCTCCTGAAATGGTCTCATGTATAGCTGTCGAGTCATTATCAATACTTGAAAAGTTGCATGCAAAAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTAGGCCAGCCCAACACAGCACAGGAGAAGAAATTGTTTCTTGTTGACCTTGGTTTAGCAACAAAGTGGAAAGATTCGTCAAGTGGAAAGCACACTGAATACGATCAACGCCCCGACATGTTTAGAGGGACTGTTCGATATGCTAGCGTTCATGCTCATTTGGGAAGAACTGCCAGTAGAAGGGATGATCTTGAATCACTTGCATATACACTAATCTTCCTTCATAGGGGTCGATTGCCATGGCAAGGTTTTCAGGGTGATGGCAAATCCTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTGCTGAGATGCTGTGCTGCTTTTGCCCCGCTCCTTTTAAACAATTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCTAACTATTCCAAGCTAATATCCTTGTTTGATGGTATGCTCGGACCTAATCCTGCATTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATGTTGAGGCAGATGATGATTCACAGCCCAAAAAGAAGGTTCGTTCAGGGATTCCTGCTTCGCAATGGATTTCAGTGTACAATGCTAGACAACCAATGAAACAAAGGTACCATTACAATGTGGCTGATGGAAGATTAGCACAGCATATTGAGAGAGGGATTGCAGACGACCTTCTTATTAGCTGTGTATCATGTTGTTCCAATCTCTGGGCACTTATAATGGATGCTGGAACTAATTATTCGGCTCAAGTTTACAAATTATCACCATTATTTTTACACAAGGAATGGATCTTGGAACAATGGGATAAGAATTTCTACATTACTTCTATTGCAGGGGCCAGTAATGGAAGCTCTGTTGTGGTGATGTCAAAAGGTACAAGGTATACTCAACAATCATACAAAGTAAGCGAATCTTTCCCCTACAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACCTCAATGGGTACTGCTGGAAATCGCTGGGGTATTGTTATGTCTCGCAACGCTGGATTCAGTGATCAGGTGGTGGAACTTGATTTTCTCTATCCAAGTGAAGGCATCCATAAACGTTGGGATAATGGTTATAGGATTACAGCAACTGCAGCTACATTGGATCAATCTGCGCTTATATTAAGCATCCCGAGGAACAGACCTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCGCTCATGTTAAGGAAAAATGGTCAAAAAACCTTTATCTTGCCCATTTGTGCTATGGGCGCACAGTATGCTGA

Protein sequence

>Msa0046070

MPQLRSGVRRPRPAAPSPPPPPKPATRGRPRTRLAAAKNINKSSQEEDPPPLLLQPDTFVVEPPKENIVIEQEEEEEEEAVGVMGDERVGLSANKDKAVAAVPEEDANSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGAVEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPNTAQEKKLFLVDLGLATKWKDSSSGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSAEMLCCFCPAPFKQFLETVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNVEADDDSQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADGRLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYSAQVYKLSPLFLHKEWILEQWDKNFYITSIAGASNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWSKNLYLAHLCYGRTVC*