Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047010 | XP_003623727.3 | 95.364 | 302 | 6 | 1 | 1 | 302 | 1 | 294 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047010 | Msa0824660 | 0.804108 | 2.530423e-49 | -8.615850e-47 |
| Msa0047010 | Msa1111070 | 0.965177 | 2.878871e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047010 | MtrunA17_Chr7g0245921 | 95.364 | 302 | 6 | 1 | 1 | 302 | 1 | 294 | 0.0 | 584 |
| Msa0047010 | MtrunA17_Chr8g0359191 | 93.709 | 302 | 11 | 1 | 1 | 302 | 1 | 294 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047010 | AT3G20070.2 | 38.762 | 307 | 154 | 4 | 1 | 300 | 1 | 280 | 1.61e-60 | 194 |
| Msa0047010 | AT3G20070.4 | 38.762 | 307 | 154 | 4 | 1 | 300 | 1 | 280 | 1.61e-60 | 194 |
| Msa0047010 | AT3G20070.1 | 38.762 | 307 | 154 | 4 | 1 | 300 | 1 | 280 | 1.61e-60 | 194 |
| Msa0047010 | AT3G20070.3 | 34.221 | 263 | 139 | 4 | 45 | 300 | 1 | 236 | 2.06e-39 | 138 |
Find 94 sgRNAs with CRISPR-Local
Find 429 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCCACTTCAATTATT+TGG | 0.074728 | 1_1:+79546594 | Msa0047010:three_prime_UTR |
| CTTCCATTGTTTGGAGAATT+AGG | 0.087482 | 1_1:-79540845 | None:intergenic |
| AGAATTCATTTCCTAGTTTA+AGG | 0.120694 | 1_1:+79546886 | Msa0047010:three_prime_UTR |
| ATTACGAGATTGTACGAATT+TGG | 0.201958 | 1_1:+79540674 | Msa0047010:five_prime_UTR |
| GTTCTAATTCCTCACCTTAT+TGG | 0.204078 | 1_1:-79543028 | None:intergenic |
| ATTCATTAATCAAATTAATT+AGG | 0.208967 | 1_1:-79546673 | None:intergenic |
| AACCTTGAGAGTAGTGTATT+TGG | 0.216226 | 1_1:-79540889 | None:intergenic |
| CGTCACCCTTTCAAAGAATA+TGG | 0.221307 | 1_1:-79546473 | None:intergenic |
| TCTTGGACAAATTAATGATT+TGG | 0.236004 | 1_1:+79541247 | Msa0047010:CDS |
| CCAATGTGTCCACTTCAATT+TGG | 0.236654 | 1_1:-79546707 | None:intergenic |
| TTTCGAAATTTGAAAGAGTT+TGG | 0.240767 | 1_1:-79540780 | None:intergenic |
| CATTCTTATAGATGAGTTAT+TGG | 0.252362 | 1_1:-79542881 | None:intergenic |
| AGTCTTACATTGATATTTAT+AGG | 0.262897 | 1_1:-79546993 | None:intergenic |
| TTCAACCAGTTCATTGTCTT+TGG | 0.270102 | 1_1:-79541775 | None:intergenic |
| CTTGGACAAATTAATGATTT+GGG | 0.321697 | 1_1:+79541248 | Msa0047010:CDS |
| ACTGAAAATGATAAGCTTCT+TGG | 0.322097 | 1_1:+79541230 | Msa0047010:CDS |
| TCGGTTTACCCTCCACCTTT+TGG | 0.329048 | 1_1:+79546550 | Msa0047010:three_prime_UTR |
| TGTAGAGAGCTTCCATTGTT+TGG | 0.350542 | 1_1:-79540854 | None:intergenic |
| TTCCATTGTTTGGAGAATTA+GGG | 0.355139 | 1_1:-79540844 | None:intergenic |
| AGCAGTTCTGCTTCCTCTCC+AGG | 0.368676 | 1_1:-79546364 | None:intergenic |
| CTTGTTAACATCTTCCAATT+CGG | 0.369685 | 1_1:-79541008 | None:intergenic |
| CAAGGAGAATGCTTCCAATA+AGG | 0.369976 | 1_1:+79543014 | Msa0047010:CDS |
| GACTAACAAACTCTCCGAAT+TGG | 0.379912 | 1_1:+79540994 | Msa0047010:intron |
| TTATCCACTGACTGTCAAAC+TGG | 0.384280 | 1_1:+79543401 | Msa0047010:CDS |
| CTTCTGAAGGAAGGAACTTC+CGG | 0.403959 | 1_1:+79542823 | Msa0047010:CDS |
| GCAGGAGTGCTCTACTTCTA+AGG | 0.404996 | 1_1:+79543192 | Msa0047010:CDS |
| AACGCACTTATCAATGCTAT+TGG | 0.413531 | 1_1:+79546923 | Msa0047010:three_prime_UTR |
| AATGAAATTAACGAGTGAAT+AGG | 0.416971 | 1_1:-79540714 | None:intergenic |
| GTCACCCTTTCAAAGAATAT+GGG | 0.439478 | 1_1:-79546472 | None:intergenic |
| GTTACTCCTTCAGTATATCA+TGG | 0.442874 | 1_1:+79546329 | Msa0047010:CDS |
| GTAATGAATTAACTTCAGTT+AGG | 0.445657 | 1_1:+79541270 | Msa0047010:CDS |
| AAATTCCTCAAATTTGTCTC+TGG | 0.449362 | 1_1:+79541043 | Msa0047010:CDS |
| TCTAAGGCTAATGATCAATC+AGG | 0.458281 | 1_1:+79543208 | Msa0047010:CDS |
| GCAGTTCTGCTTCCTCTCCA+GGG | 0.466747 | 1_1:-79546363 | None:intergenic |
| AAGAATATGGGGCACATGGT+TGG | 0.471766 | 1_1:-79546460 | None:intergenic |
| GATTAGCACCAGAGTGGATG+AGG | 0.477950 | 1_1:+79546419 | Msa0047010:CDS |
| ATCTGATTTCTCTCTCGCGC+GGG | 0.478565 | 1_1:-79540757 | None:intergenic |
| AAAACGTATGAGGCAGGAAC+AGG | 0.482742 | 1_1:+79542909 | Msa0047010:CDS |
| CAAATTGAAGTGGACACATT+GGG | 0.486696 | 1_1:+79546708 | Msa0047010:three_prime_UTR |
| CGGTGATTTAAGTAACAGAA+AGG | 0.490633 | 1_1:+79542843 | Msa0047010:CDS |
| CTTTCTGTTACTTAAATCAC+CGG | 0.503366 | 1_1:-79542842 | None:intergenic |
| GTGCCCCATATTCTTTGAAA+GGG | 0.505330 | 1_1:+79546468 | Msa0047010:CDS |
| TGGAGTATTGATGAGAAACT+AGG | 0.507262 | 1_1:+79546614 | Msa0047010:three_prime_UTR |
| CTATACCATGTTCTATCTCT+AGG | 0.509430 | 1_1:+79546385 | Msa0047010:CDS |
| CAATGCTATTGGTAAATACA+TGG | 0.510776 | 1_1:+79546934 | Msa0047010:three_prime_UTR |
| ATGTCTTCCCTCATCCACTC+TGG | 0.518274 | 1_1:-79546427 | None:intergenic |
| TGTGCCCCATATTCTTTGAA+AGG | 0.521452 | 1_1:+79546467 | Msa0047010:CDS |
| AATACTCCAAATAATTGAAG+TGG | 0.521636 | 1_1:-79546600 | None:intergenic |
| GAGGCAGGAACAGGATGCAT+TGG | 0.522526 | 1_1:+79542918 | Msa0047010:CDS |
| ATTTATAGGCTAAGCTTGAA+AGG | 0.524522 | 1_1:-79546979 | None:intergenic |
| ATCACTTTCTTGTGTATCAA+CGG | 0.524742 | 1_1:-79543327 | None:intergenic |
| TTTATACCATCTGAAAATGA+AGG | 0.531763 | 1_1:+79542955 | Msa0047010:CDS |
| CACTACACACTAAAATGACA+TGG | 0.545829 | 1_1:-79546863 | None:intergenic |
| TCTTATAGATGAGTTATTGG+AGG | 0.545996 | 1_1:-79542878 | None:intergenic |
| TCATGGATTAGCAGAGCCCC+TGG | 0.546093 | 1_1:+79546346 | Msa0047010:CDS |
| GGTTGCCAAAGACAATGAAC+TGG | 0.546734 | 1_1:+79541770 | Msa0047010:CDS |
| GAATGACAAGAAAACGTATG+AGG | 0.548734 | 1_1:+79542899 | Msa0047010:CDS |
| GCTTTGAGTCCAAATTGAAG+TGG | 0.553377 | 1_1:+79546698 | Msa0047010:three_prime_UTR |
| GACAAGAAAACGTATGAGGC+AGG | 0.556312 | 1_1:+79542903 | Msa0047010:CDS |
| ACAACAAAGCCATATCCAAA+AGG | 0.558962 | 1_1:-79546565 | None:intergenic |
| AAGCCATATCCAAAAGGTGG+AGG | 0.559932 | 1_1:-79546559 | None:intergenic |
| GAAGTTGCAAAAGCTTCTGA+AGG | 0.569658 | 1_1:+79542810 | Msa0047010:CDS |
| CCAAATTGAAGTGGACACAT+TGG | 0.571152 | 1_1:+79546707 | Msa0047010:three_prime_UTR |
| TTGCAAAAGCTTCTGAAGGA+AGG | 0.573902 | 1_1:+79542814 | Msa0047010:CDS |
| TAGTACCAGAGACAAATTTG+AGG | 0.576550 | 1_1:-79541048 | None:intergenic |
| TCGTCCAGTTTGACAGTCAG+TGG | 0.577183 | 1_1:-79543405 | None:intergenic |
| AACCCTAATTCTCCAAACAA+TGG | 0.580166 | 1_1:+79540842 | Msa0047010:exon |
| ATGAACTGGTTGAACATCAA+AGG | 0.581642 | 1_1:+79541784 | Msa0047010:CDS |
| TTCAAAGAATATGGGGCACA+TGG | 0.582147 | 1_1:-79546464 | None:intergenic |
| CTCCAAATAATTGAAGTGGA+AGG | 0.583053 | 1_1:-79546596 | None:intergenic |
| TGAAAATGAAGGTAATTCTG+TGG | 0.586128 | 1_1:+79542966 | Msa0047010:CDS |
| GCTAATCCATGATATACTGA+AGG | 0.589699 | 1_1:-79546335 | None:intergenic |
| AAGAAGTAATAGATCACTTG+AGG | 0.598230 | 1_1:+79541207 | Msa0047010:CDS |
| ATTAGCACCAGAGTGGATGA+GGG | 0.598318 | 1_1:+79546420 | Msa0047010:CDS |
| CTCCAAATACACTACTCTCA+AGG | 0.601722 | 1_1:+79540887 | Msa0047010:CDS |
| TCTGATTTCTCTCTCGCGCG+GGG | 0.602441 | 1_1:-79540756 | None:intergenic |
| ATCGAAAATAACCTTAAACT+AGG | 0.607395 | 1_1:-79546897 | None:intergenic |
| CGAATTGGAAGATGTTAACA+AGG | 0.607782 | 1_1:+79541009 | Msa0047010:CDS |
| GTCAACACGAAGCTTTCTCA+AGG | 0.615618 | 1_1:+79542996 | Msa0047010:CDS |
| CAGTTCTGCTTCCTCTCCAG+GGG | 0.617514 | 1_1:-79546362 | None:intergenic |
| GCGCGGGGTTTCTCACGTAG+AGG | 0.617566 | 1_1:-79540741 | None:intergenic |
| TCTGCAATGCATCAATCAAG+TGG | 0.617859 | 1_1:+79543437 | Msa0047010:CDS |
| ACAAAGCCATATCCAAAAGG+TGG | 0.626651 | 1_1:-79546562 | None:intergenic |
| GATTAGCAGAGCCCCTGGAG+AGG | 0.632797 | 1_1:+79546351 | Msa0047010:CDS |
| GATCTGATTTCTCTCTCGCG+CGG | 0.633517 | 1_1:-79540758 | None:intergenic |
| AGCCATATCCAAAAGGTGGA+GGG | 0.636505 | 1_1:-79546558 | None:intergenic |
| AAATTAACGAGTGAATAGGA+AGG | 0.643943 | 1_1:-79540710 | None:intergenic |
| TCACCCTTTCAAAGAATATG+GGG | 0.651458 | 1_1:-79546471 | None:intergenic |
| ATGCATTGGACATAGAAGCA+AGG | 0.662443 | 1_1:+79542932 | Msa0047010:CDS |
| GTTATCAATTTGAAACACTG+AGG | 0.664501 | 1_1:+79546499 | Msa0047010:CDS |
| GAAACTAGGAATGAAACTTG+AGG | 0.668280 | 1_1:+79546628 | Msa0047010:three_prime_UTR |
| TTGAAAGATTAGCACCAGAG+TGG | 0.679575 | 1_1:+79546413 | Msa0047010:CDS |
| GTGTGCCTAGAGATAGAACA+TGG | 0.680456 | 1_1:-79546390 | None:intergenic |
| ATTGAAGTGGACACATTGGG+AGG | 0.682316 | 1_1:+79546711 | Msa0047010:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACAAAATAATAAAAAAG+GGG | - | chr1_1:79541318-79541337 | None:intergenic | 10.0% |
| !!! | ATATCATTTTTAAATAGATT+TGG | + | chr1_1:79541629-79541648 | Msa0047010:intron | 10.0% |
| !!! | AATTTTAATTATTTGCTTTT+GGG | - | chr1_1:79542444-79542463 | None:intergenic | 10.0% |
| !!! | TAATTTTAATTATTTGCTTT+TGG | - | chr1_1:79542445-79542464 | None:intergenic | 10.0% |
| !!! | TTTGAAGAATTTTAAAATTA+GGG | - | chr1_1:79543973-79543992 | None:intergenic | 10.0% |
| !!! | ATTTGAAGAATTTTAAAATT+AGG | - | chr1_1:79543974-79543993 | None:intergenic | 10.0% |
| !! | ATTCATTAATCAAATTAATT+AGG | - | chr1_1:79546676-79546695 | None:intergenic | 10.0% |
| !! | TTAATCACTAATAGTTATTT+AGG | + | chr1_1:79541135-79541154 | Msa0047010:intron | 15.0% |
| !! | TTACAAAATAATAAAAAAGG+GGG | - | chr1_1:79541317-79541336 | None:intergenic | 15.0% |
| !! | TATGGATATTAATTGAAAAA+AGG | + | chr1_1:79541342-79541361 | Msa0047010:intron | 15.0% |
| !! | ATGGATATTAATTGAAAAAA+GGG | + | chr1_1:79541343-79541362 | Msa0047010:intron | 15.0% |
| !!! | TTTTTTTTTTGGTTTATTTG+TGG | + | chr1_1:79541690-79541709 | Msa0047010:intron | 15.0% |
| !!! | TTTTTATGTTTGAATGATTT+CGG | + | chr1_1:79542034-79542053 | Msa0047010:intron | 15.0% |
| !!! | CCATTTTATAATTACTATTT+GGG | - | chr1_1:79542230-79542249 | None:intergenic | 15.0% |
| !! | AAATAGTAATTATAAAATGG+CGG | + | chr1_1:79542230-79542249 | Msa0047010:intron | 15.0% |
| !!! | ATTTTAATTATTTGCTTTTG+GGG | - | chr1_1:79542443-79542462 | None:intergenic | 15.0% |
| !! | AATTAAAATTATTGTCTTTC+AGG | + | chr1_1:79542454-79542473 | Msa0047010:intron | 15.0% |
| !!! | GTTTCATTTTATTATTTTGA+TGG | + | chr1_1:79543124-79543143 | Msa0047010:intron | 15.0% |
| !! | ACTATTACTTTGTTAATATA+TGG | + | chr1_1:79543650-79543669 | Msa0047010:intron | 15.0% |
| !!! | TATAAATTTTAAACATCTCA+TGG | - | chr1_1:79543827-79543846 | None:intergenic | 15.0% |
| !! | ATTTATAGAATTTAGAAATC+AGG | + | chr1_1:79543840-79543859 | Msa0047010:intron | 15.0% |
| !! | TTTATAGAATTTAGAAATCA+GGG | + | chr1_1:79543841-79543860 | Msa0047010:intron | 15.0% |
| !!! | TATTTCGTTTTGTTTTATTT+TGG | + | chr1_1:79544126-79544145 | Msa0047010:intron | 15.0% |
| !!! | TATTTCGTTTTGTTTTATTT+TGG | - | chr1_1:79544126-79544145 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAATCTTTCAAA+TGG | - | chr1_1:79544689-79544708 | None:intergenic | 15.0% |
| !! | TATACTATTTGTAGATAATA+TGG | + | chr1_1:79544897-79544916 | Msa0047010:intron | 15.0% |
| !!! | TTATACAAACAATATCGATT+TGG | + | chr1_1:79541378-79541397 | Msa0047010:intron | 20.0% |
| !!! | TATACAAACAATATCGATTT+GGG | + | chr1_1:79541379-79541398 | Msa0047010:intron | 20.0% |
| !!! | ATATTTTTGGAAATAGTATC+CGG | - | chr1_1:79541605-79541624 | None:intergenic | 20.0% |
| !!! | GAAATATTGTTTTTTTGACT+TGG | + | chr1_1:79541902-79541921 | Msa0047010:intron | 20.0% |
| !! | CCCAAATAGTAATTATAAAA+TGG | + | chr1_1:79542227-79542246 | Msa0047010:intron | 20.0% |
| !!! | GCCATTTTATAATTACTATT+TGG | - | chr1_1:79542231-79542250 | None:intergenic | 20.0% |
| !! | AATAGTAATTATAAAATGGC+GGG | + | chr1_1:79542231-79542250 | Msa0047010:intron | 20.0% |
| !!! | TTAGTTACTTCTCTTATTTT+TGG | + | chr1_1:79542549-79542568 | Msa0047010:intron | 20.0% |
| !! | TTTATCATATGAACTTATGT+AGG | + | chr1_1:79542626-79542645 | Msa0047010:intron | 20.0% |
| !! | AAACATGATATAAATGCTTA+AGG | - | chr1_1:79542734-79542753 | None:intergenic | 20.0% |
| !!! | ATTTATATCATGTTTTACTG+AGG | + | chr1_1:79542739-79542758 | Msa0047010:intron | 20.0% |
| !! | AACAAAAAGTGATCATATTA+AGG | - | chr1_1:79543162-79543181 | None:intergenic | 20.0% |
| !! | GACTAAGAAATAATAAGAAA+AGG | - | chr1_1:79543527-79543546 | None:intergenic | 20.0% |
| !!! | TTTTCTATATTGTGTTAATC+TGG | + | chr1_1:79543596-79543615 | Msa0047010:intron | 20.0% |
| !! | TTGAATTAAAGCAAATTGTA+TGG | - | chr1_1:79543693-79543712 | None:intergenic | 20.0% |
| !! | TCTAGAAAATTACTAAGATT+TGG | - | chr1_1:79544532-79544551 | None:intergenic | 20.0% |
| !! | TCTAGAAAATTACTAAGATT+TGG | + | chr1_1:79544532-79544551 | Msa0047010:intron | 20.0% |
| !!! | TGAAAGATTTTAAAATTGAC+AGG | + | chr1_1:79544691-79544710 | Msa0047010:intron | 20.0% |
| !! | CTATTACAATTGATATTTCA+TGG | - | chr1_1:79544753-79544772 | None:intergenic | 20.0% |
| !!! | AAAGATTTTCTTACTACTAT+AGG | + | chr1_1:79544817-79544836 | Msa0047010:intron | 20.0% |
| !! | ATATGTATTGTAAGTTTAGT+AGG | + | chr1_1:79545021-79545040 | Msa0047010:intron | 20.0% |
| !! | AATTGGGAAATATAAACTAT+TGG | + | chr1_1:79545135-79545154 | Msa0047010:intron | 20.0% |
| !!! | TTTAAGGGAAATTTTTATTG+CGG | + | chr1_1:79545216-79545235 | Msa0047010:intron | 20.0% |
| !! | TTAAAGGACTTAGATTTAAA+TGG | + | chr1_1:79545558-79545577 | Msa0047010:intron | 20.0% |
| !! | AAAATAAGAGGATGAAATAT+TGG | - | chr1_1:79545846-79545865 | None:intergenic | 20.0% |
| !! | TTACTGAACTGAATAAAAAA+GGG | - | chr1_1:79546153-79546172 | None:intergenic | 20.0% |
| !! | TTTACTGAACTGAATAAAAA+AGG | - | chr1_1:79546154-79546173 | None:intergenic | 20.0% |
| !! | AGTCTTACATTGATATTTAT+AGG | - | chr1_1:79546996-79547015 | None:intergenic | 20.0% |
| !!! | GTCTTTTTTCAAATTTCTAG+AGG | + | chr1_1:79540649-79540668 | Msa0047010:five_prime_UTR | 25.0% |
| ! | AATGAAATTAACGAGTGAAT+AGG | - | chr1_1:79540717-79540736 | None:intergenic | 25.0% |
| ! | TTTCGAAATTTGAAAGAGTT+TGG | - | chr1_1:79540783-79540802 | None:intergenic | 25.0% |
| ! | TCTTGGACAAATTAATGATT+TGG | + | chr1_1:79541247-79541266 | Msa0047010:CDS | 25.0% |
| ! | CTTGGACAAATTAATGATTT+GGG | + | chr1_1:79541248-79541267 | Msa0047010:CDS | 25.0% |
| ! | GTAATGAATTAACTTCAGTT+AGG | + | chr1_1:79541270-79541289 | Msa0047010:CDS | 25.0% |
| !! | TGGGTATTATGATTCAATTT+TGG | + | chr1_1:79541398-79541417 | Msa0047010:intron | 25.0% |
| !!! | TTTTTTTGGTTTATTTGTGG+TGG | + | chr1_1:79541693-79541712 | Msa0047010:intron | 25.0% |
| !!! | TAAATTTGTTTTTCTCATCC+AGG | + | chr1_1:79541748-79541767 | Msa0047010:intron | 25.0% |
| !!! | AAATTTGTTTTTCTCATCCA+GGG | + | chr1_1:79541749-79541768 | Msa0047010:intron | 25.0% |
| ! | CTTACAAGATCTTAGTTTAT+TGG | + | chr1_1:79541933-79541952 | Msa0047010:intron | 25.0% |
| !! | AAAGCTCGTTCTATATTTTT+AGG | + | chr1_1:79542093-79542112 | Msa0047010:intron | 25.0% |
| !!! | ATTTTTCAACGAGATATTCA+TGG | + | chr1_1:79542383-79542402 | Msa0047010:intron | 25.0% |
| ! | TATGTAGGAATCTTTATTCT+AGG | + | chr1_1:79542641-79542660 | Msa0047010:intron | 25.0% |
| ! | ATATAAATGCTTAAGGACAA+AGG | - | chr1_1:79542727-79542746 | None:intergenic | 25.0% |
| ! | CATTCTTATAGATGAGTTAT+TGG | - | chr1_1:79542884-79542903 | None:intergenic | 25.0% |
| ! | TTTATACCATCTGAAAATGA+AGG | + | chr1_1:79542955-79542974 | Msa0047010:CDS | 25.0% |
| ! | TTACATGTGAATTGTTTCAA+TGG | + | chr1_1:79543261-79543280 | Msa0047010:intron | 25.0% |
| ! | TACATGTGAATTGTTTCAAT+GGG | + | chr1_1:79543262-79543281 | Msa0047010:intron | 25.0% |
| ! | AAGAAAGTGATCATAAAAAC+TGG | + | chr1_1:79543339-79543358 | Msa0047010:CDS | 25.0% |
| !!! | TACTCTTTTTGAGTATACAT+TGG | + | chr1_1:79543370-79543389 | Msa0047010:CDS | 25.0% |
| ! | CAATTGTTAACTGAAAAACA+TGG | - | chr1_1:79543558-79543577 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTTAACAATTGTC+TGG | + | chr1_1:79543560-79543579 | Msa0047010:intron | 25.0% |
| ! | TCTAGTTAGGTTACATTAAT+GGG | + | chr1_1:79543801-79543820 | Msa0047010:intron | 25.0% |
| !!! | AAACTTGTTCTTTTCTATCT+AGG | + | chr1_1:79544318-79544337 | Msa0047010:intron | 25.0% |
| ! | CAATTGATATTTCATGGTAT+TGG | - | chr1_1:79544747-79544766 | None:intergenic | 25.0% |
| !! | AGTAGTAAGAAAATCTTTTG+TGG | - | chr1_1:79544815-79544834 | None:intergenic | 25.0% |
| !! | CTTGTGATTTTTCATTTAAC+AGG | + | chr1_1:79544985-79545004 | Msa0047010:intron | 25.0% |
| ! | ACCCATCATACAAATTAATT+GGG | + | chr1_1:79545119-79545138 | Msa0047010:intron | 25.0% |
| !!! | TCCCAATTAATTTGTATGAT+GGG | - | chr1_1:79545123-79545142 | None:intergenic | 25.0% |
| !!! | TTCCCAATTAATTTGTATGA+TGG | - | chr1_1:79545124-79545143 | None:intergenic | 25.0% |
| ! | TATAAACTATTGGATTCAAG+TGG | + | chr1_1:79545145-79545164 | Msa0047010:intron | 25.0% |
| ! | ATAAACTATTGGATTCAAGT+GGG | + | chr1_1:79545146-79545165 | Msa0047010:intron | 25.0% |
| ! | AAATTTCCCTTAAATATGAC+TGG | - | chr1_1:79545210-79545229 | None:intergenic | 25.0% |
| !! | TTAAGGGAAATTTTTATTGC+GGG | + | chr1_1:79545217-79545236 | Msa0047010:intron | 25.0% |
| !! | AATGTGTTTGAGATGAAATT+TGG | + | chr1_1:79545383-79545402 | Msa0047010:intron | 25.0% |
| !! | AATTTGGTTAATCCCTATTT+TGG | + | chr1_1:79545399-79545418 | Msa0047010:intron | 25.0% |
| ! | ATCATGTCTATAGTATGTTT+AGG | - | chr1_1:79545539-79545558 | None:intergenic | 25.0% |
| ! | CATACTATAGACATGATTAA+AGG | + | chr1_1:79545542-79545561 | Msa0047010:intron | 25.0% |
| !! | AAATGGTTTTCCTTTAGATA+TGG | + | chr1_1:79545575-79545594 | Msa0047010:intron | 25.0% |
| ! | CTATTGAAAACCATATCTAA+AGG | - | chr1_1:79545588-79545607 | None:intergenic | 25.0% |
| !! | CTTTAGATATGGTTTTCAAT+AGG | + | chr1_1:79545586-79545605 | Msa0047010:intron | 25.0% |
| ! | GATATATGCAGAAAAAAAAG+AGG | - | chr1_1:79545780-79545799 | None:intergenic | 25.0% |
| ! | TTTAAAGAGAAAAAAGAGAC+AGG | - | chr1_1:79545869-79545888 | None:intergenic | 25.0% |
| !!! | TCTTTAAAACAGTTGTTGTA+TGG | + | chr1_1:79545881-79545900 | Msa0047010:intron | 25.0% |
| !!! | CTTTAAAACAGTTGTTGTAT+GGG | + | chr1_1:79545882-79545901 | Msa0047010:intron | 25.0% |
| ! | AAAATGATACATAAGCTGAT+TGG | - | chr1_1:79545961-79545980 | None:intergenic | 25.0% |
| !! | AATCAGCTTATGTATCATTT+TGG | + | chr1_1:79545960-79545979 | Msa0047010:intron | 25.0% |
| ! | AACATTATAACATCAAGAGA+TGG | + | chr1_1:79546058-79546077 | Msa0047010:intron | 25.0% |
| ! | TACTGAACTGAATAAAAAAG+GGG | - | chr1_1:79546152-79546171 | None:intergenic | 25.0% |
| ! | ATCAAACAAGAATCTAGTAT+AGG | - | chr1_1:79546194-79546213 | None:intergenic | 25.0% |
| !! | TACTAGATTCTTGTTTGATT+TGG | + | chr1_1:79546195-79546214 | Msa0047010:intron | 25.0% |
| !!! | TCATGGCTTTAAATTTTCAT+CGG | + | chr1_1:79546531-79546550 | Msa0047010:three_prime_UTR | 25.0% |
| ! | AATACTCCAAATAATTGAAG+TGG | - | chr1_1:79546603-79546622 | None:intergenic | 25.0% |
| ! | AGAATTCATTTCCTAGTTTA+AGG | + | chr1_1:79546886-79546905 | Msa0047010:three_prime_UTR | 25.0% |
| ! | ATCGAAAATAACCTTAAACT+AGG | - | chr1_1:79546900-79546919 | None:intergenic | 25.0% |
| !!! | TGTAAGACTTCACTTTTAAT+CGG | + | chr1_1:79547007-79547026 | Msa0047010:three_prime_UTR | 25.0% |
| ATTACGAGATTGTACGAATT+TGG | + | chr1_1:79540674-79540693 | Msa0047010:five_prime_UTR | 30.0% | |
| AAATTAACGAGTGAATAGGA+AGG | - | chr1_1:79540713-79540732 | None:intergenic | 30.0% | |
| TTCCATTGTTTGGAGAATTA+GGG | - | chr1_1:79540847-79540866 | None:intergenic | 30.0% | |
| CTTGTTAACATCTTCCAATT+CGG | - | chr1_1:79541011-79541030 | None:intergenic | 30.0% | |
| AAATTCCTCAAATTTGTCTC+TGG | + | chr1_1:79541043-79541062 | Msa0047010:CDS | 30.0% | |
| AAGAAGTAATAGATCACTTG+AGG | + | chr1_1:79541207-79541226 | Msa0047010:CDS | 30.0% | |
| ACTGAAAATGATAAGCTTCT+TGG | + | chr1_1:79541230-79541249 | Msa0047010:CDS | 30.0% | |
| !! | ATTATGATTCAATTTTGGCC+CGG | + | chr1_1:79541403-79541422 | Msa0047010:intron | 30.0% |
| TTGAACTTATGATCTTAGAG+AGG | - | chr1_1:79541466-79541485 | None:intergenic | 30.0% | |
| !! | TTTGGTGTATCTGAATGTTT+TGG | + | chr1_1:79541647-79541666 | Msa0047010:intron | 30.0% |
| ! | TTGGTGTATCTGAATGTTTT+GGG | + | chr1_1:79541648-79541667 | Msa0047010:intron | 30.0% |
| ! | TGAACATCAAAGGCTTTTAT+TGG | + | chr1_1:79541794-79541813 | Msa0047010:CDS | 30.0% |
| AAGATCTTAGTTTATTGGCA+TGG | + | chr1_1:79541938-79541957 | Msa0047010:intron | 30.0% | |
| ! | ATGCTCTAAATGTCTAATCT+TGG | + | chr1_1:79542159-79542178 | Msa0047010:intron | 30.0% |
| ! | TGCTCTAAATGTCTAATCTT+GGG | + | chr1_1:79542160-79542179 | Msa0047010:intron | 30.0% |
| GCTATATAACTAGTCAATGT+GGG | - | chr1_1:79542208-79542227 | None:intergenic | 30.0% | |
| TAACTTATGACCTCTGAATT+TGG | - | chr1_1:79542305-79542324 | None:intergenic | 30.0% | |
| ATGTGCTTATGTCAGTAATA+TGG | + | chr1_1:79542337-79542356 | Msa0047010:intron | 30.0% | |
| GAATATCTCGTTGAAAAATC+AGG | - | chr1_1:79542382-79542401 | None:intergenic | 30.0% | |
| !! | TAATTATTTGCTTTTGGGGA+TGG | - | chr1_1:79542439-79542458 | None:intergenic | 30.0% |
| TTTGGTTAAGTCCTTATTAG+AGG | + | chr1_1:79542567-79542586 | Msa0047010:intron | 30.0% | |
| TCATATGATAAAGATCAACC+AGG | - | chr1_1:79542618-79542637 | None:intergenic | 30.0% | |
| ! | GTGTTATGATTTGTGAATGT+AGG | + | chr1_1:79542687-79542706 | Msa0047010:intron | 30.0% |
| ! | ATCATGTTTTACTGAGGATT+TGG | + | chr1_1:79542745-79542764 | Msa0047010:intron | 30.0% |
| ! | CTTTCTGTTACTTAAATCAC+CGG | - | chr1_1:79542845-79542864 | None:intergenic | 30.0% |
| TCTTATAGATGAGTTATTGG+AGG | - | chr1_1:79542881-79542900 | None:intergenic | 30.0% | |
| ! | GAATTACCTTCATTTTCAGA+TGG | - | chr1_1:79542964-79542983 | None:intergenic | 30.0% |
| TGAAAATGAAGGTAATTCTG+TGG | + | chr1_1:79542966-79542985 | Msa0047010:CDS | 30.0% | |
| GCAAATATATTCCGATTTCA+GGG | - | chr1_1:79543053-79543072 | None:intergenic | 30.0% | |
| TGCAAATATATTCCGATTTC+AGG | - | chr1_1:79543054-79543073 | None:intergenic | 30.0% | |
| !!! | TCACTTTTTGTTGTGAAAAG+CGG | + | chr1_1:79543170-79543189 | Msa0047010:intron | 30.0% |
| ACATGTGAATTGTTTCAATG+GGG | + | chr1_1:79543263-79543282 | Msa0047010:intron | 30.0% | |
| ATCACTTTCTTGTGTATCAA+CGG | - | chr1_1:79543330-79543349 | None:intergenic | 30.0% | |
| TTGTGTTAATCTGGTTATGT+TGG | + | chr1_1:79543605-79543624 | Msa0047010:intron | 30.0% | |
| TGTGTTAATCTGGTTATGTT+GGG | + | chr1_1:79543606-79543625 | Msa0047010:intron | 30.0% | |
| GCTTTAATTCAACATTATCC+TGG | + | chr1_1:79543701-79543720 | Msa0047010:intron | 30.0% | |
| CAAATTTAGATGCTCTAGTT+AGG | + | chr1_1:79543788-79543807 | Msa0047010:intron | 30.0% | |
| CTCTAGTTAGGTTACATTAA+TGG | + | chr1_1:79543800-79543819 | Msa0047010:intron | 30.0% | |
| TAAAACGTGCTCGTTAAAAA+GGG | + | chr1_1:79544019-79544038 | Msa0047010:intron | 30.0% | |
| !! | GTTAAAAAGGGTTTTGATGT+AGG | + | chr1_1:79544031-79544050 | Msa0047010:intron | 30.0% |
| !!! | TTTTGTTTTATTTTGGCCCA+CGG | + | chr1_1:79544133-79544152 | Msa0047010:intron | 30.0% |
| !!! | GATTCAACCCTTATTTTGAT+AGG | + | chr1_1:79544254-79544273 | Msa0047010:intron | 30.0% |
| CGACAAACCTATCAAAATAA+GGG | - | chr1_1:79544356-79544375 | None:intergenic | 30.0% | |
| CGACAAACCTATCAAAATAA+GGG | + | chr1_1:79544356-79544375 | Msa0047010:intron | 30.0% | |
| !!! | TTTTGTTTTATTTTGGCCCA+CGG | - | chr1_1:79544133-79544152 | None:intergenic | 30.0% |
| ! | AAATGGATTCAATCATAACC+TGG | - | chr1_1:79544672-79544691 | None:intergenic | 30.0% |
| GGTTAATTGAGTTAAAGAAC+TGG | - | chr1_1:79544865-79544884 | None:intergenic | 30.0% | |
| AATAGTATACATCATGACAG+TGG | - | chr1_1:79544886-79544905 | None:intergenic | 30.0% | |
| CTAAAGATTTGAAGACAAGT+TGG | + | chr1_1:79544958-79544977 | Msa0047010:intron | 30.0% | |
| TTCATTTAACAGGAGCAAAA+AGG | + | chr1_1:79544995-79545014 | Msa0047010:intron | 30.0% | |
| TTGTAAGTTTAGTAGGAACT+AGG | + | chr1_1:79545028-79545047 | Msa0047010:intron | 30.0% | |
| GTATACTAATTCTTGTGTAG+AGG | + | chr1_1:79545053-79545072 | Msa0047010:intron | 30.0% | |
| TATATAAACCGCAAGATCTA+TGG | - | chr1_1:79545095-79545114 | None:intergenic | 30.0% | |
| AGATCTTGCGGTTTATATAT+TGG | + | chr1_1:79545096-79545115 | Msa0047010:intron | 30.0% | |
| GACCCATCATACAAATTAAT+TGG | + | chr1_1:79545118-79545137 | Msa0047010:intron | 30.0% | |
| !! | AAAAGCACCAGTCATATTTA+AGG | + | chr1_1:79545200-79545219 | Msa0047010:intron | 30.0% |
| ! | AAAGCACCAGTCATATTTAA+GGG | + | chr1_1:79545201-79545220 | Msa0047010:intron | 30.0% |
| !! | AATCCCTATTTTGGAAAAGA+TGG | + | chr1_1:79545408-79545427 | Msa0047010:intron | 30.0% |
| !!! | CTTTTTGTTGTTTTCATTGC+TGG | + | chr1_1:79545659-79545678 | Msa0047010:intron | 30.0% |
| ATTCAAACAAACCCAATCAA+GGG | + | chr1_1:79545745-79545764 | Msa0047010:intron | 30.0% | |
| AAATATTGGATGAACAGAAG+AGG | - | chr1_1:79545832-79545851 | None:intergenic | 30.0% | |
| AAAAGAGACAGGAAAATAAG+AGG | - | chr1_1:79545858-79545877 | None:intergenic | 30.0% | |
| ACTGAACTGAATAAAAAAGG+GGG | - | chr1_1:79546151-79546170 | None:intergenic | 30.0% | |
| TCAGTTCAGTAAACAATTCA+TGG | + | chr1_1:79546161-79546180 | Msa0047010:intron | 30.0% | |
| !! | TAGATTCTTGTTTGATTTGG+AGG | + | chr1_1:79546198-79546217 | Msa0047010:intron | 30.0% |
| !! | AGATTCTTGTTTGATTTGGA+GGG | + | chr1_1:79546199-79546218 | Msa0047010:intron | 30.0% |
| ACAATAAAATGTAGCAGAGA+AGG | - | chr1_1:79546225-79546244 | None:intergenic | 30.0% | |
| AACATTTCATTACAAGTGCT+TGG | + | chr1_1:79546274-79546293 | Msa0047010:intron | 30.0% | |
| TCTCTTATTGTCTCTATGAT+AGG | + | chr1_1:79546307-79546326 | Msa0047010:intron | 30.0% | |
| ! | GTTATCAATTTGAAACACTG+AGG | + | chr1_1:79546499-79546518 | Msa0047010:CDS | 30.0% |
| TTCCTTCCACTTCAATTATT+TGG | + | chr1_1:79546594-79546613 | Msa0047010:three_prime_UTR | 30.0% | |
| CAATGCTATTGGTAAATACA+TGG | + | chr1_1:79546934-79546953 | Msa0047010:three_prime_UTR | 30.0% | |
| ATTTATAGGCTAAGCTTGAA+AGG | - | chr1_1:79546982-79547001 | None:intergenic | 30.0% | |
| AACCCTAATTCTCCAAACAA+TGG | + | chr1_1:79540842-79540861 | Msa0047010:exon | 35.0% | |
| CTTCCATTGTTTGGAGAATT+AGG | - | chr1_1:79540848-79540867 | None:intergenic | 35.0% | |
| AACCTTGAGAGTAGTGTATT+TGG | - | chr1_1:79540892-79540911 | None:intergenic | 35.0% | |
| ! | GTTAGTCTGCGAGAATAAAT+AGG | - | chr1_1:79540981-79541000 | None:intergenic | 35.0% |
| CGAATTGGAAGATGTTAACA+AGG | + | chr1_1:79541009-79541028 | Msa0047010:CDS | 35.0% | |
| TAGTACCAGAGACAAATTTG+AGG | - | chr1_1:79541051-79541070 | None:intergenic | 35.0% | |
| !! | ATTAATTTGCGTTACAGCTG+CGG | + | chr1_1:79541184-79541203 | Msa0047010:intron | 35.0% |
| TTCAACGTGCTAACAATTCT+TGG | + | chr1_1:79541481-79541500 | Msa0047010:intron | 35.0% | |
| TCAACGTGCTAACAATTCTT+GGG | + | chr1_1:79541482-79541501 | Msa0047010:intron | 35.0% | |
| TTTGATCAGTCCATACATAC+AGG | + | chr1_1:79541505-79541524 | Msa0047010:intron | 35.0% | |
| TTGATCAGTCCATACATACA+GGG | + | chr1_1:79541506-79541525 | Msa0047010:intron | 35.0% | |
| ! | TGGTGTATCTGAATGTTTTG+GGG | + | chr1_1:79541649-79541668 | Msa0047010:intron | 35.0% |
| !!! | TTTTGGTTTATTTGTGGTGG+TGG | + | chr1_1:79541696-79541715 | Msa0047010:intron | 35.0% |
| TTCAACCAGTTCATTGTCTT+TGG | - | chr1_1:79541778-79541797 | None:intergenic | 35.0% | |
| ATGAACTGGTTGAACATCAA+AGG | + | chr1_1:79541784-79541803 | Msa0047010:CDS | 35.0% | |
| ! | ACATCAAAGGCTTTTATTGG+AGG | + | chr1_1:79541797-79541816 | Msa0047010:CDS | 35.0% |
| TGAATGATTTCGGATGAGTT+AGG | + | chr1_1:79542044-79542063 | Msa0047010:intron | 35.0% | |
| !! | TTTTAGGTCACCTGTTATCA+AGG | + | chr1_1:79542109-79542128 | Msa0047010:intron | 35.0% |
| GGCTATATAACTAGTCAATG+TGG | - | chr1_1:79542209-79542228 | None:intergenic | 35.0% | |
| GTTCAAAAGACCAAATTCAG+AGG | + | chr1_1:79542292-79542311 | Msa0047010:intron | 35.0% | |
| TTAAGTCCTTATTAGAGGCA+AGG | + | chr1_1:79542572-79542591 | Msa0047010:intron | 35.0% | |
| ! | AGGATTTGGTTGTCAACATT+TGG | + | chr1_1:79542759-79542778 | Msa0047010:intron | 35.0% |
| CGGTGATTTAAGTAACAGAA+AGG | + | chr1_1:79542843-79542862 | Msa0047010:CDS | 35.0% | |
| GAATGACAAGAAAACGTATG+AGG | + | chr1_1:79542899-79542918 | Msa0047010:CDS | 35.0% | |
| GTTCTAATTCCTCACCTTAT+TGG | - | chr1_1:79543031-79543050 | None:intergenic | 35.0% | |
| AGGAATTAGAACCCTGAAAT+CGG | + | chr1_1:79543039-79543058 | Msa0047010:intron | 35.0% | |
| ! | TCTAAGGCTAATGATCAATC+AGG | + | chr1_1:79543208-79543227 | Msa0047010:CDS | 35.0% |
| TTAATCTGGTTATGTTGGGA+AGG | + | chr1_1:79543610-79543629 | Msa0047010:intron | 35.0% | |
| ATTCAACATTATCCTGGCAA+TGG | + | chr1_1:79543707-79543726 | Msa0047010:intron | 35.0% | |
| GTAAAACGTGCTCGTTAAAA+AGG | + | chr1_1:79544018-79544037 | Msa0047010:intron | 35.0% | |
| !! | AAAAAGGGTTTTGATGTAGG+AGG | + | chr1_1:79544034-79544053 | Msa0047010:intron | 35.0% |
| !! | AAAAGGGTTTTGATGTAGGA+GGG | + | chr1_1:79544035-79544054 | Msa0047010:intron | 35.0% |
| !!! | TTTGTTTTATTTTGGCCCAC+GGG | + | chr1_1:79544134-79544153 | Msa0047010:intron | 35.0% |
| GAAAGAAATAACAAACCCGT+GGG | - | chr1_1:79544474-79544493 | None:intergenic | 35.0% | |
| TGAAAGAAATAACAAACCCG+TGG | - | chr1_1:79544473-79544492 | None:intergenic | 35.0% | |
| ! | AATCAAAAAGTGTGCCTCTT+AGG | - | chr1_1:79544427-79544446 | None:intergenic | 35.0% |
| ! | TCGAGATTTTCTCTCAATTC+TGG | + | chr1_1:79544229-79544248 | Msa0047010:intron | 35.0% |
| ! | AGATTTTCTCTCAATTCTGG+TGG | + | chr1_1:79544232-79544251 | Msa0047010:intron | 35.0% |
| GCGACAAACCTATCAAAATA+AGG | - | chr1_1:79544355-79544374 | None:intergenic | 35.0% | |
| GCGACAAACTTGTGAAAATA+GGG | - | chr1_1:79544294-79544313 | None:intergenic | 35.0% | |
| AGCGACAAACTTGTGAAAAT+AGG | - | chr1_1:79544295-79544314 | None:intergenic | 35.0% | |
| GCGACAAACCTATCAAAATA+AGG | + | chr1_1:79544355-79544374 | Msa0047010:intron | 35.0% | |
| !!! | CTGGAAACCCTTATTTTGAT+AGG | - | chr1_1:79544366-79544385 | None:intergenic | 35.0% |
| ! | AGATTTTCTCTCAATTCTGG+TGG | - | chr1_1:79544232-79544251 | None:intergenic | 35.0% |
| ! | TCGAGATTTTCTCTCAATTC+TGG | - | chr1_1:79544229-79544248 | None:intergenic | 35.0% |
| ! | AATCAAAAAGTGTGCCTCTT+AGG | + | chr1_1:79544427-79544446 | Msa0047010:intron | 35.0% |
| TGAAAGAAATAACAAACCCG+TGG | + | chr1_1:79544473-79544492 | Msa0047010:intron | 35.0% | |
| GAAAGAAATAACAAACCCGT+GGG | + | chr1_1:79544474-79544493 | Msa0047010:intron | 35.0% | |
| !!! | TTTGTTTTATTTTGGCCCAC+GGG | - | chr1_1:79544134-79544153 | None:intergenic | 35.0% |
| AAATTGACAGGACCATAACT+TGG | + | chr1_1:79544703-79544722 | Msa0047010:intron | 35.0% | |
| !!! | CATTTTCAAGTGCCAAGTTA+TGG | - | chr1_1:79544718-79544737 | None:intergenic | 35.0% |
| CATAACTTGGCACTTGAAAA+TGG | + | chr1_1:79544716-79544735 | Msa0047010:intron | 35.0% | |
| TTGAGTTAAAGAACTGGACT+CGG | - | chr1_1:79544859-79544878 | None:intergenic | 35.0% | |
| ATTCTTGTGTAGAGGTGAAT+TGG | + | chr1_1:79545061-79545080 | Msa0047010:intron | 35.0% | |
| GTATGAGATTGAATGTGTAG+TGG | + | chr1_1:79545267-79545286 | Msa0047010:intron | 35.0% | |
| ATTGAATGTGTAGTGGTAGA+GGG | + | chr1_1:79545274-79545293 | Msa0047010:intron | 35.0% | |
| ! | CCACCATCTTTTCCAAAATA+GGG | - | chr1_1:79545414-79545433 | None:intergenic | 35.0% |
| ! | TCCACCATCTTTTCCAAAAT+AGG | - | chr1_1:79545415-79545434 | None:intergenic | 35.0% |
| ACACATGCTCAAACTACATA+AGG | - | chr1_1:79545444-79545463 | None:intergenic | 35.0% | |
| TTATGTAGTTTGAGCATGTG+TGG | + | chr1_1:79545443-79545462 | Msa0047010:intron | 35.0% | |
| TCCTATTTATTCTGCCAATG+AGG | - | chr1_1:79545485-79545504 | None:intergenic | 35.0% | |
| CATTGGCAGAATAAATAGGA+TGG | + | chr1_1:79545485-79545504 | Msa0047010:intron | 35.0% | |
| GGTAAACTGTTATAGGTCAA+AGG | + | chr1_1:79545510-79545529 | Msa0047010:intron | 35.0% | |
| AAAAGCCATTTCTCAATAGC+TGG | - | chr1_1:79545644-79545663 | None:intergenic | 35.0% | |
| ATTGCTGGTAGAAATGCAAT+TGG | + | chr1_1:79545674-79545693 | Msa0047010:intron | 35.0% | |
| ATTGGCAAATCATTATGCCT+CGG | + | chr1_1:79545692-79545711 | Msa0047010:intron | 35.0% | |
| CATTCAAACAAACCCAATCA+AGG | + | chr1_1:79545744-79545763 | Msa0047010:intron | 35.0% | |
| AATAAAAAAGGGGGGAAAGA+GGG | - | chr1_1:79546142-79546161 | None:intergenic | 35.0% | |
| CTGAACTGAATAAAAAAGGG+GGG | - | chr1_1:79546150-79546169 | None:intergenic | 35.0% | |
| GTTACTCCTTCAGTATATCA+TGG | + | chr1_1:79546329-79546348 | Msa0047010:CDS | 35.0% | |
| GCTAATCCATGATATACTGA+AGG | - | chr1_1:79546338-79546357 | None:intergenic | 35.0% | |
| CTATACCATGTTCTATCTCT+AGG | + | chr1_1:79546385-79546404 | Msa0047010:CDS | 35.0% | |
| TCACCCTTTCAAAGAATATG+GGG | - | chr1_1:79546474-79546493 | None:intergenic | 35.0% | |
| GTCACCCTTTCAAAGAATAT+GGG | - | chr1_1:79546475-79546494 | None:intergenic | 35.0% | |
| ACAACAAAGCCATATCCAAA+AGG | - | chr1_1:79546568-79546587 | None:intergenic | 35.0% | |
| CTCCAAATAATTGAAGTGGA+AGG | - | chr1_1:79546599-79546618 | None:intergenic | 35.0% | |
| !! | TGGAGTATTGATGAGAAACT+AGG | + | chr1_1:79546614-79546633 | Msa0047010:three_prime_UTR | 35.0% |
| GAAACTAGGAATGAAACTTG+AGG | + | chr1_1:79546628-79546647 | Msa0047010:three_prime_UTR | 35.0% | |
| CAAATTGAAGTGGACACATT+GGG | + | chr1_1:79546708-79546727 | Msa0047010:three_prime_UTR | 35.0% | |
| CACTACACACTAAAATGACA+TGG | - | chr1_1:79546866-79546885 | None:intergenic | 35.0% | |
| AACGCACTTATCAATGCTAT+TGG | + | chr1_1:79546923-79546942 | Msa0047010:three_prime_UTR | 35.0% | |
| !! | ACTTCACTTTTAATCGGTCA+AGG | + | chr1_1:79547013-79547032 | Msa0047010:three_prime_UTR | 35.0% |
| !! | CTTCACTTTTAATCGGTCAA+GGG | + | chr1_1:79547014-79547033 | Msa0047010:three_prime_UTR | 35.0% |
| TGTAGAGAGCTTCCATTGTT+TGG | - | chr1_1:79540857-79540876 | None:intergenic | 40.0% | |
| CTCCAAATACACTACTCTCA+AGG | + | chr1_1:79540887-79540906 | Msa0047010:CDS | 40.0% | |
| GACTAACAAACTCTCCGAAT+TGG | + | chr1_1:79540994-79541013 | Msa0047010:intron | 40.0% | |
| CTTATGATCTTAGAGAGGAG+AGG | - | chr1_1:79541461-79541480 | None:intergenic | 40.0% | |
| ! | GAGACTCTCAATCTTTTCTG+TGG | + | chr1_1:79541834-79541853 | Msa0047010:CDS | 40.0% |
| GTTTATTGGCATGGTGATCA+CGG | + | chr1_1:79541947-79541966 | Msa0047010:intron | 40.0% | |
| TTTATTGGCATGGTGATCAC+GGG | + | chr1_1:79541948-79541967 | Msa0047010:intron | 40.0% | |
| CTTTGATACCATCAGAAGCT+GGG | - | chr1_1:79542077-79542096 | None:intergenic | 40.0% | |
| !! | AAAAGCCAGCTTTGGGATAA+GGG | - | chr1_1:79542260-79542279 | None:intergenic | 40.0% |
| !!! | TTATCCCAAAGCTGGCTTTT+GGG | + | chr1_1:79542260-79542279 | Msa0047010:intron | 40.0% |
| ! | GTCAGTAATATGGACTGACT+CGG | + | chr1_1:79542347-79542366 | Msa0047010:intron | 40.0% |
| CAACCAGGTAGTCATCATAA+TGG | - | chr1_1:79542603-79542622 | None:intergenic | 40.0% | |
| GAAGTTGCAAAAGCTTCTGA+AGG | + | chr1_1:79542810-79542829 | Msa0047010:CDS | 40.0% | |
| ! | TTGCAAAAGCTTCTGAAGGA+AGG | + | chr1_1:79542814-79542833 | Msa0047010:CDS | 40.0% |
| ATGCATTGGACATAGAAGCA+AGG | + | chr1_1:79542932-79542951 | Msa0047010:CDS | 40.0% | |
| CAAGGAGAATGCTTCCAATA+AGG | + | chr1_1:79543014-79543033 | Msa0047010:CDS | 40.0% | |
| AGAATGCTTCCAATAAGGTG+AGG | + | chr1_1:79543019-79543038 | Msa0047010:intron | 40.0% | |
| !! | TTTTTGTTGTGAAAAGCGGC+AGG | + | chr1_1:79543174-79543193 | Msa0047010:intron | 40.0% |
| AGGCTAATGATCAATCAGGT+TGG | + | chr1_1:79543212-79543231 | Msa0047010:intron | 40.0% | |
| ACGGCTGTTAAACACAATGA+AGG | - | chr1_1:79543311-79543330 | None:intergenic | 40.0% | |
| ! | TTATCCACTGACTGTCAAAC+TGG | + | chr1_1:79543401-79543420 | Msa0047010:CDS | 40.0% |
| TCTGCAATGCATCAATCAAG+TGG | + | chr1_1:79543437-79543456 | Msa0047010:CDS | 40.0% | |
| ATAGTATGCTCAAGCATGAC+TGG | + | chr1_1:79544769-79544788 | Msa0047010:intron | 40.0% | |
| AGACCATTCCATAGATCTTG+CGG | + | chr1_1:79545084-79545103 | Msa0047010:intron | 40.0% | |
| AAACCGCAAGATCTATGGAA+TGG | - | chr1_1:79545090-79545109 | None:intergenic | 40.0% | |
| ACTATTGGATTCAAGTGGGA+TGG | + | chr1_1:79545150-79545169 | Msa0047010:intron | 40.0% | |
| GATTGAATGTGTAGTGGTAG+AGG | + | chr1_1:79545273-79545292 | Msa0047010:intron | 40.0% | |
| GTGCATGACACGATATGATT+AGG | + | chr1_1:79545355-79545374 | Msa0047010:intron | 40.0% | |
| !! | CCCTATTTTGGAAAAGATGG+TGG | + | chr1_1:79545411-79545430 | Msa0047010:intron | 40.0% |
| GCCTCATTGGCAGAATAAAT+AGG | + | chr1_1:79545481-79545500 | Msa0047010:intron | 40.0% | |
| TGGCAGAATAAATAGGATGG+AGG | + | chr1_1:79545488-79545507 | Msa0047010:intron | 40.0% | |
| GGCAGAATAAATAGGATGGA+GGG | + | chr1_1:79545489-79545508 | Msa0047010:intron | 40.0% | |
| GATGGAGGGTAAACTGTTAT+AGG | + | chr1_1:79545503-79545522 | Msa0047010:intron | 40.0% | |
| CATTTCTCAATAGCTGGAGT+TGG | - | chr1_1:79545638-79545657 | None:intergenic | 40.0% | |
| CAACTCCAGCTATTGAGAAA+TGG | + | chr1_1:79545636-79545655 | Msa0047010:intron | 40.0% | |
| ACTTATGTTTGCAGCCAGTA+GGG | + | chr1_1:79545716-79545735 | Msa0047010:intron | 40.0% | |
| GTTTGAATGTTCAACCCTAC+TGG | - | chr1_1:79545733-79545752 | None:intergenic | 40.0% | |
| AGGAATTTGGAAGATGTGCA+AGG | - | chr1_1:79545812-79545831 | None:intergenic | 40.0% | |
| GGATGAACAGAAGAGGAATT+TGG | - | chr1_1:79545825-79545844 | None:intergenic | 40.0% | |
| GAATAAAAAAGGGGGGAAAG+AGG | - | chr1_1:79546143-79546162 | None:intergenic | 40.0% | |
| TTGAAAGATTAGCACCAGAG+TGG | + | chr1_1:79546413-79546432 | Msa0047010:CDS | 40.0% | |
| TTCAAAGAATATGGGGCACA+TGG | - | chr1_1:79546467-79546486 | None:intergenic | 40.0% | |
| TGTGCCCCATATTCTTTGAA+AGG | + | chr1_1:79546467-79546486 | Msa0047010:CDS | 40.0% | |
| ! | GTGCCCCATATTCTTTGAAA+GGG | + | chr1_1:79546468-79546487 | Msa0047010:CDS | 40.0% |
| CGTCACCCTTTCAAAGAATA+TGG | - | chr1_1:79546476-79546495 | None:intergenic | 40.0% | |
| ! | CACTGAGGTTTCTCTTTTCA+TGG | + | chr1_1:79546514-79546533 | Msa0047010:exon | 40.0% |
| ACAAAGCCATATCCAAAAGG+TGG | - | chr1_1:79546565-79546584 | None:intergenic | 40.0% | |
| ! | GCTTTGAGTCCAAATTGAAG+TGG | + | chr1_1:79546698-79546717 | Msa0047010:three_prime_UTR | 40.0% |
| CCAATGTGTCCACTTCAATT+TGG | - | chr1_1:79546710-79546729 | None:intergenic | 40.0% | |
| CCAAATTGAAGTGGACACAT+TGG | + | chr1_1:79546707-79546726 | Msa0047010:three_prime_UTR | 40.0% | |
| !! | ATGATTCAATTTTGGCCCGG+TGG | + | chr1_1:79541406-79541425 | Msa0047010:intron | 45.0% |
| GGAGTAAAGCCCTGTATGTA+TGG | - | chr1_1:79541518-79541537 | None:intergenic | 45.0% | |
| GGCTTTACTCCGACTTCAAT+TGG | + | chr1_1:79541527-79541546 | Msa0047010:intron | 45.0% | |
| AATCCCACCATCTACTAGCA+GGG | - | chr1_1:79541555-79541574 | None:intergenic | 45.0% | |
| CCAAAGACCACCTAATATGG+GGG | - | chr1_1:79541581-79541600 | None:intergenic | 45.0% | |
| CCCAAAGACCACCTAATATG+GGG | - | chr1_1:79541582-79541601 | None:intergenic | 45.0% | |
| CCCCATATTAGGTGGTCTTT+GGG | + | chr1_1:79541579-79541598 | Msa0047010:intron | 45.0% | |
| GCCCAAAGACCACCTAATAT+GGG | - | chr1_1:79541583-79541602 | None:intergenic | 45.0% | |
| ATATTAGGTGGTCTTTGGGC+CGG | + | chr1_1:79541583-79541602 | Msa0047010:intron | 45.0% | |
| ATGCTGTGTGTGTTGGACTA+TGG | + | chr1_1:79541719-79541738 | Msa0047010:intron | 45.0% | |
| TTCATTGTCTTTGGCAACCC+TGG | - | chr1_1:79541769-79541788 | None:intergenic | 45.0% | |
| GGTTGCCAAAGACAATGAAC+TGG | + | chr1_1:79541770-79541789 | Msa0047010:CDS | 45.0% | |
| GCTTTGATACCATCAGAAGC+TGG | - | chr1_1:79542078-79542097 | None:intergenic | 45.0% | |
| ! | ACCTGTTATCAAGGCATCTG+TGG | + | chr1_1:79542118-79542137 | Msa0047010:intron | 45.0% |
| ! | TCCACAGATGCCTTGATAAC+AGG | - | chr1_1:79542122-79542141 | None:intergenic | 45.0% |
| ATGTCTAATCTTGGGCGTGA+AGG | + | chr1_1:79542168-79542187 | Msa0047010:intron | 45.0% | |
| !! | CAAAAGCCAGCTTTGGGATA+AGG | - | chr1_1:79542261-79542280 | None:intergenic | 45.0% |
| !!! | CTTATCCCAAAGCTGGCTTT+TGG | + | chr1_1:79542259-79542278 | Msa0047010:intron | 45.0% |
| !!! | TATCCCAAAGCTGGCTTTTG+GGG | + | chr1_1:79542261-79542280 | Msa0047010:intron | 45.0% |
| CCAGGTAGTCATCATAATGG+AGG | - | chr1_1:79542600-79542619 | None:intergenic | 45.0% | |
| CCTCCATTATGATGACTACC+TGG | + | chr1_1:79542597-79542616 | Msa0047010:intron | 45.0% | |
| ! | CTTCTGAAGGAAGGAACTTC+CGG | + | chr1_1:79542823-79542842 | Msa0047010:CDS | 45.0% |
| GACAAGAAAACGTATGAGGC+AGG | + | chr1_1:79542903-79542922 | Msa0047010:CDS | 45.0% | |
| AAAACGTATGAGGCAGGAAC+AGG | + | chr1_1:79542909-79542928 | Msa0047010:CDS | 45.0% | |
| GTCAACACGAAGCTTTCTCA+AGG | + | chr1_1:79542996-79543015 | Msa0047010:CDS | 45.0% | |
| TATCCTGGCAATGGTGCAAT+AGG | + | chr1_1:79543716-79543735 | Msa0047010:intron | 45.0% | |
| CAGAACTTATGCAGCCTAAG+AGG | + | chr1_1:79544180-79544199 | Msa0047010:intron | 45.0% | |
| !! | CTCTCAATTCTGGTGGATTC+TGG | - | chr1_1:79544239-79544258 | None:intergenic | 45.0% |
| CAGAACTTATGCAGCCTAAG+AGG | - | chr1_1:79544180-79544199 | None:intergenic | 45.0% | |
| TAAGAAAGCCCTCCTACATC+AGG | + | chr1_1:79544580-79544599 | Msa0047010:intron | 45.0% | |
| GTATCCCTCAAACCTGATGT+AGG | - | chr1_1:79544595-79544614 | None:intergenic | 45.0% | |
| ATCAGGTTTGAGGGATACTG+TGG | + | chr1_1:79544597-79544616 | Msa0047010:intron | 45.0% | |
| TCAGGTTTGAGGGATACTGT+GGG | + | chr1_1:79544598-79544617 | Msa0047010:intron | 45.0% | |
| GGAAATGGCTAGCAATAACC+AGG | + | chr1_1:79544651-79544670 | Msa0047010:intron | 45.0% | |
| ATGACTGGTGTGAGAACACA+AGG | + | chr1_1:79544784-79544803 | Msa0047010:intron | 45.0% | |
| GTGGGATGGATGAAATCAAC+TGG | + | chr1_1:79545164-79545183 | Msa0047010:intron | 45.0% | |
| TGTAGTTTGAGCATGTGTGG+AGG | + | chr1_1:79545446-79545465 | Msa0047010:intron | 45.0% | |
| ! | CATGTGTGGAGGAGACTTTT+CGG | + | chr1_1:79545457-79545476 | Msa0047010:intron | 45.0% |
| CACTTATGTTTGCAGCCAGT+AGG | + | chr1_1:79545715-79545734 | Msa0047010:intron | 45.0% | |
| GGAGAGATGTACCCTTGATT+GGG | - | chr1_1:79545759-79545778 | None:intergenic | 45.0% | |
| AGGAGAGATGTACCCTTGAT+TGG | - | chr1_1:79545760-79545779 | None:intergenic | 45.0% | |
| ATTCAGTTCAGCAGTCCATC+AGG | + | chr1_1:79546012-79546031 | Msa0047010:intron | 45.0% | |
| AGATGGAATTCAAATCCCCC+CGG | + | chr1_1:79546075-79546094 | Msa0047010:intron | 45.0% | |
| GTGTGCCTAGAGATAGAACA+TGG | - | chr1_1:79546393-79546412 | None:intergenic | 45.0% | |
| ATTAGCACCAGAGTGGATGA+GGG | + | chr1_1:79546420-79546439 | Msa0047010:CDS | 45.0% | |
| AAGAATATGGGGCACATGGT+TGG | - | chr1_1:79546463-79546482 | None:intergenic | 45.0% | |
| ! | TACCCTCCACCTTTTGGATA+TGG | + | chr1_1:79546556-79546575 | Msa0047010:three_prime_UTR | 45.0% |
| AGCCATATCCAAAAGGTGGA+GGG | - | chr1_1:79546561-79546580 | None:intergenic | 45.0% | |
| AAGCCATATCCAAAAGGTGG+AGG | - | chr1_1:79546562-79546581 | None:intergenic | 45.0% | |
| ATTGAAGTGGACACATTGGG+AGG | + | chr1_1:79546711-79546730 | Msa0047010:three_prime_UTR | 45.0% | |
| !! | ATTTACAAAATAATAAAAAA+GGG | - | chr1_1:79541319-79541338 | None:intergenic | 5.0% |
| !! | AATTTACAAAATAATAAAAA+AGG | - | chr1_1:79541320-79541339 | None:intergenic | 5.0% |
| !!! | TATTATTTTGTAAATTTTTA+TGG | + | chr1_1:79541324-79541343 | Msa0047010:intron | 5.0% |
| !!! | AAATGATATATATATATTTT+TGG | - | chr1_1:79541618-79541637 | None:intergenic | 5.0% |
| !!! | AGATTTTTTTTTTTTTTTTT+TGG | + | chr1_1:79541679-79541698 | Msa0047010:intron | 5.0% |
| ATCTGATTTCTCTCTCGCGC+GGG | - | chr1_1:79540760-79540779 | None:intergenic | 50.0% | |
| GATCTGATTTCTCTCTCGCG+CGG | - | chr1_1:79540761-79540780 | None:intergenic | 50.0% | |
| AGCAGGGGACCAATTGAAGT+CGG | - | chr1_1:79541539-79541558 | None:intergenic | 50.0% | |
| ATTGGTCCCCTGCTAGTAGA+TGG | + | chr1_1:79541545-79541564 | Msa0047010:intron | 50.0% | |
| ATCCCACCATCTACTAGCAG+GGG | - | chr1_1:79541554-79541573 | None:intergenic | 50.0% | |
| CAATCCCACCATCTACTAGC+AGG | - | chr1_1:79541556-79541575 | None:intergenic | 50.0% | |
| !! | CTGCTAGTAGATGGTGGGAT+TGG | + | chr1_1:79541554-79541573 | Msa0047010:intron | 50.0% |
| !! | TGGGATTGGTCCCCCATATT+AGG | + | chr1_1:79541568-79541587 | Msa0047010:intron | 50.0% |
| ! | GATTGGTCCCCCATATTAGG+TGG | + | chr1_1:79541571-79541590 | Msa0047010:intron | 50.0% |
| CCCCCATATTAGGTGGTCTT+TGG | + | chr1_1:79541578-79541597 | Msa0047010:intron | 50.0% | |
| GGCCCAAAGACCACCTAATA+TGG | - | chr1_1:79541584-79541603 | None:intergenic | 50.0% | |
| ACCATCAGAAGCTGGGCTTT+AGG | - | chr1_1:79542070-79542089 | None:intergenic | 50.0% | |
| CAACCCCAAAAGCCAGCTTT+GGG | - | chr1_1:79542267-79542286 | None:intergenic | 50.0% | |
| TCAACCCCAAAAGCCAGCTT+TGG | - | chr1_1:79542268-79542287 | None:intergenic | 50.0% | |
| ! | GAGGCACCTTGCCTCTAATA+AGG | - | chr1_1:79542581-79542600 | None:intergenic | 50.0% |
| !! | GCAGGAGTGCTCTACTTCTA+AGG | + | chr1_1:79543192-79543211 | Msa0047010:CDS | 50.0% |
| TCGTCCAGTTTGACAGTCAG+TGG | - | chr1_1:79543408-79543427 | None:intergenic | 50.0% | |
| CATCCTATTGCACCATTGCC+AGG | - | chr1_1:79543722-79543741 | None:intergenic | 50.0% | |
| TGGTGCAATAGGATGCTGCA+CGG | + | chr1_1:79543727-79543746 | Msa0047010:intron | 50.0% | |
| CCCTCAAACCTGATGTAGGA+GGG | - | chr1_1:79544591-79544610 | None:intergenic | 50.0% | |
| CCCTCCTACATCAGGTTTGA+GGG | + | chr1_1:79544588-79544607 | Msa0047010:intron | 50.0% | |
| TCCCTCAAACCTGATGTAGG+AGG | - | chr1_1:79544592-79544611 | None:intergenic | 50.0% | |
| !! | GACTCGGTTGATTCTAGAGC+AGG | - | chr1_1:79544843-79544862 | None:intergenic | 50.0% |
| ! | GAGACTTTTCGGAGCCTCAT+TGG | + | chr1_1:79545468-79545487 | Msa0047010:intron | 50.0% |
| TCCATCAGGTGTTAGCTCAG+TGG | + | chr1_1:79546026-79546045 | Msa0047010:intron | 50.0% | |
| ACCACTGAGCTAACACCTGA+TGG | - | chr1_1:79546030-79546049 | None:intergenic | 50.0% | |
| GATGGAATTCAAATCCCCCC+GGG | + | chr1_1:79546076-79546095 | Msa0047010:intron | 50.0% | |
| ATGGAATTCAAATCCCCCCG+GGG | + | chr1_1:79546077-79546096 | Msa0047010:intron | 50.0% | |
| TGATGACTAACAACCGTCCC+CGG | - | chr1_1:79546097-79546116 | None:intergenic | 50.0% | |
| GATTAGCACCAGAGTGGATG+AGG | + | chr1_1:79546419-79546438 | Msa0047010:CDS | 50.0% | |
| ATGTCTTCCCTCATCCACTC+TGG | - | chr1_1:79546430-79546449 | None:intergenic | 50.0% | |
| ! | TCGGTTTACCCTCCACCTTT+TGG | + | chr1_1:79546550-79546569 | Msa0047010:three_prime_UTR | 50.0% |
| TCTGATTTCTCTCTCGCGCG+GGG | - | chr1_1:79540759-79540778 | None:intergenic | 55.0% | |
| ATCCCCAAGTCACACACCAC+CGG | - | chr1_1:79541425-79541444 | None:intergenic | 55.0% | |
| GTCCCCTGCTAGTAGATGGT+GGG | + | chr1_1:79541549-79541568 | Msa0047010:intron | 55.0% | |
| !! | GTGGTGGATGCTGTGTGTGT+TGG | + | chr1_1:79541712-79541731 | Msa0047010:intron | 55.0% |
| GCCTAAAGCCCAGCTTCTGA+TGG | + | chr1_1:79542066-79542085 | Msa0047010:intron | 55.0% | |
| GGCAACCCTTATCCCAAAGC+TGG | + | chr1_1:79542252-79542271 | Msa0047010:intron | 55.0% | |
| GAGGCAGGAACAGGATGCAT+TGG | + | chr1_1:79542918-79542937 | Msa0047010:CDS | 55.0% | |
| GCCCTCCTACATCAGGTTTG+AGG | + | chr1_1:79544587-79544606 | Msa0047010:intron | 55.0% | |
| ! | GGCTGCAAACATAAGTGCCG+AGG | - | chr1_1:79545712-79545731 | None:intergenic | 55.0% |
| AATTCAAATCCCCCCGGGGA+CGG | + | chr1_1:79546081-79546100 | Msa0047010:intron | 55.0% | |
| ATGACTAACAACCGTCCCCG+GGG | - | chr1_1:79546095-79546114 | None:intergenic | 55.0% | |
| GATGACTAACAACCGTCCCC+GGG | - | chr1_1:79546096-79546115 | None:intergenic | 55.0% | |
| !! | TCATGGATTAGCAGAGCCCC+TGG | + | chr1_1:79546346-79546365 | Msa0047010:CDS | 55.0% |
| CAGTTCTGCTTCCTCTCCAG+GGG | - | chr1_1:79546365-79546384 | None:intergenic | 55.0% | |
| GCAGTTCTGCTTCCTCTCCA+GGG | - | chr1_1:79546366-79546385 | None:intergenic | 55.0% | |
| AGCAGTTCTGCTTCCTCTCC+AGG | - | chr1_1:79546367-79546386 | None:intergenic | 55.0% | |
| TCCCCAAGTCACACACCACC+GGG | - | chr1_1:79541424-79541443 | None:intergenic | 60.0% | |
| GGTCCCCTGCTAGTAGATGG+TGG | + | chr1_1:79541548-79541567 | Msa0047010:intron | 60.0% | |
| TGACTAACAACCGTCCCCGG+GGG | - | chr1_1:79546094-79546113 | None:intergenic | 60.0% | |
| GATTAGCAGAGCCCCTGGAG+AGG | + | chr1_1:79546351-79546370 | Msa0047010:CDS | 60.0% | |
| GCGCGGGGTTTCTCACGTAG+AGG | - | chr1_1:79540744-79540763 | None:intergenic | 65.0% | |
| TGGCCCGGTGGTGTGTGACT+TGG | + | chr1_1:79541418-79541437 | Msa0047010:intron | 65.0% | |
| GGCCCGGTGGTGTGTGACTT+GGG | + | chr1_1:79541419-79541438 | Msa0047010:intron | 65.0% | |
| GCCCGGTGGTGTGTGACTTG+GGG | + | chr1_1:79541420-79541439 | Msa0047010:intron | 65.0% | |
| GACTAACAACCGTCCCCGGG+GGG | - | chr1_1:79546093-79546112 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79540641 | 79547044 | 79540641 | ID=Msa0047010;Name=Msa0047010 |
| chr1_1 | mRNA | 79540641 | 79547044 | 79540641 | ID=Msa0047010-mRNA-1;Parent=Msa0047010;Name=Msa0047010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=220|0.85|0.87|1|1|1|8|525|302 |
| chr1_1 | exon | 79540641 | 79540908 | 79540641 | ID=Msa0047010-mRNA-1:exon:27447;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79540995 | 79541064 | 79540995 | ID=Msa0047010-mRNA-1:exon:27448;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79541201 | 79541291 | 79541201 | ID=Msa0047010-mRNA-1:exon:27449;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79541770 | 79541855 | 79541770 | ID=Msa0047010-mRNA-1:exon:27450;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79542785 | 79543035 | 79542785 | ID=Msa0047010-mRNA-1:exon:27451;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79543190 | 79543229 | 79543190 | ID=Msa0047010-mRNA-1:exon:27452;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79543327 | 79543458 | 79543327 | ID=Msa0047010-mRNA-1:exon:27453;Parent=Msa0047010-mRNA-1 |
| chr1_1 | exon | 79546329 | 79547044 | 79546329 | ID=Msa0047010-mRNA-1:exon:27454;Parent=Msa0047010-mRNA-1 |
| chr1_1 | five_prime_UTR | 79540641 | 79540860 | 79540641 | ID=Msa0047010-mRNA-1:five_prime_utr;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79540861 | 79540908 | 79540861 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79540995 | 79541064 | 79540995 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79541201 | 79541291 | 79541201 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79541770 | 79541855 | 79541770 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79542785 | 79543035 | 79542785 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79543190 | 79543229 | 79543190 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79543327 | 79543458 | 79543327 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | CDS | 79546329 | 79546519 | 79546329 | ID=Msa0047010-mRNA-1:cds;Parent=Msa0047010-mRNA-1 |
| chr1_1 | three_prime_UTR | 79546520 | 79547044 | 79546520 | ID=Msa0047010-mRNA-1:three_prime_utr;Parent=Msa0047010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
