AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049580 MtrunA17_Chr4g0053121 93.572 1089 60 3 1 1089 1 1079 0.0 1964
Msa0049580 MtrunA17_Chr5g0401911 47.967 738 245 16 349 1077 231 838 0.0 569
Msa0049580 MtrunA17_Chr5g0401911 62.185 238 89 1 1 238 1 237 8.34e-82 285
Msa0049580 MtrunA17_Chr4g0044561 33.996 1106 598 24 1 1083 1 997 7.44e-146 462
Msa0049580 MtrunA17_Chr3g0142411 40.961 437 239 6 43 463 90 523 4.92e-77 275
Msa0049580 MtrunA17_Chr1g0156371 36.051 552 288 12 1 503 1 536 4.07e-75 270
Msa0049580 MtrunA17_Chr5g0405291 34.851 505 255 11 1 458 1 478 1.46e-59 219
Msa0049580 MtrunA17_Chr8g0384881 37.417 302 129 5 1 271 1 273 3.26e-41 162
Msa0049580 MtrunA17_Chr1g0159951 36.797 231 121 2 41 271 138 343 2.90e-31 132
Msa0049580 MtrunA17_Chr3g0130811 38.494 239 114 5 38 271 47 257 4.80e-30 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049580 AT2G23360.1 45.406 751 323 13 1 741 1 674 0.0 552
Msa0049580 AT2G23360.1 36.269 193 82 6 913 1087 727 896 2.22e-17 88.2
Msa0049580 AT1G19835.6 38.788 495 259 9 1 457 1 489 9.57e-78 276
Msa0049580 AT1G19835.5 38.788 495 259 9 1 457 1 489 9.57e-78 276
Msa0049580 AT1G19835.3 38.788 495 259 9 1 457 1 489 9.57e-78 276
Msa0049580 AT1G19835.1 38.788 495 259 9 1 457 1 489 9.57e-78 276
Msa0049580 AT1G19835.4 38.788 495 259 9 1 457 1 489 9.57e-78 276
Msa0049580 AT1G19835.2 38.788 495 259 9 1 457 1 489 9.57e-78 276
Msa0049580 AT1G47900.2 28.300 947 549 26 33 945 101 951 2.61e-74 267
Msa0049580 AT1G47900.3 28.148 945 555 25 33 945 101 953 6.23e-74 266
Msa0049580 AT1G47900.1 28.148 945 555 25 33 945 101 953 6.23e-74 266
Msa0049580 AT4G36120.2 35.141 498 276 10 1 454 1 495 7.26e-62 229
Msa0049580 AT4G36120.1 35.141 498 276 10 1 454 1 495 7.26e-62 229
Msa0049580 AT1G77580.4 39.224 232 106 3 39 270 20 216 3.24e-33 138
Msa0049580 AT1G77580.2 39.224 232 106 3 39 270 54 250 3.44e-33 139
Msa0049580 AT1G77580.3 39.224 232 106 3 39 270 54 250 3.44e-33 139
Msa0049580 AT1G77580.1 39.224 232 106 3 39 270 20 216 3.85e-33 137
Msa0049580 AT3G05270.3 32.573 307 166 6 1 294 1 279 2.02e-31 132
Msa0049580 AT3G05270.2 32.573 307 166 6 1 294 1 279 2.02e-31 132
Msa0049580 AT3G05270.1 32.573 307 166 6 1 294 1 279 2.02e-31 132
Msa0049580 AT3G19370.3 30.102 392 165 12 155 545 143 426 3.79e-30 128
Msa0049580 AT3G19370.3 31.690 284 126 10 802 1082 480 698 7.61e-16 83.2
Msa0049580 AT3G19370.1 30.102 392 165 12 155 545 143 426 3.79e-30 128
Msa0049580 AT3G19370.1 31.690 284 126 10 802 1082 480 698 7.61e-16 83.2
Msa0049580 AT3G19370.2 30.102 392 165 12 155 545 143 426 3.79e-30 128
Msa0049580 AT3G19370.2 31.690 284 126 10 802 1082 480 698 7.61e-16 83.2
Msa0049580 AT1G21810.3 36.364 209 91 3 62 270 14 180 6.16e-25 111
Msa0049580 AT1G21810.1 36.364 209 91 3 62 270 14 180 6.16e-25 111

Find 224 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGCAATGGCTTGTCTTTC+TGG 0.087478 1_2:+2934347 None:intergenic
TGCTGTTTGGTTCTCTTTAT+TGG 0.145621 1_2:+2935401 None:intergenic
TCTAATGAAATTTGAGATTA+AGG 0.179292 1_2:+2938161 None:intergenic
CTGCAATAACATTGTCAAAA+AGG 0.191246 1_2:+2933190 None:intergenic
CAAAGTATCGATTCTTCTAT+TGG 0.248764 1_2:+2936213 None:intergenic
CCAATCAAATTGTTTCTTGA+TGG 0.251020 1_2:+2935037 None:intergenic
TTAATCTCAAATTTCATTAG+AGG 0.251362 1_2:-2938159 Msa0049580:intron
GTTTGTGGAAGAAGTTATTA+TGG 0.255118 1_2:-2932843 Msa0049580:CDS
CGAAATGAAGAGAGAGAATT+TGG 0.270780 1_2:-2936481 Msa0049580:CDS
GTCCTTAACGGATCAACTTT+TGG 0.276773 1_2:-2934751 Msa0049580:CDS
AGAGGTCGGTCTCAAGGTTT+TGG 0.284127 1_2:-2934589 Msa0049580:CDS
TTACATTCTTCGTAGCATTA+TGG 0.286634 1_2:-2937705 Msa0049580:exon
CAAATTCTCTCTCTTCATTT+CGG 0.289408 1_2:+2936482 None:intergenic
TTCCACAAACTTCCGCTTCC+CGG 0.295489 1_2:+2932856 None:intergenic
AGCGAAAGTGAGGCAGAGTT+TGG 0.301566 1_2:-2935002 Msa0049580:CDS
TGTCTTTCTGGTTAATATCA+TGG 0.309747 1_2:+2934359 None:intergenic
CAATCCTTAAAAGAATCTTA+TGG 0.311961 1_2:-2934690 Msa0049580:CDS
TGATCCTTCAAATAACTCTT+TGG 0.316192 1_2:-2935465 Msa0049580:CDS
AATCTCACTTCAAAAGAAAA+TGG 0.325222 1_2:-2937617 Msa0049580:CDS
TTGGCATCAATGTCTGATAT+TGG 0.327469 1_2:-2935989 Msa0049580:CDS
TAACATTCCCAGTTGGCTTC+AGG 0.333343 1_2:-2935639 Msa0049580:CDS
TCTTGCTGATAAAGAAGAAT+TGG 0.337844 1_2:-2937200 Msa0049580:CDS
TCAGCTGCTTCCCAAGATTA+AGG 0.339508 1_2:+2933241 None:intergenic
CATGGATGACTTTGTTGAAA+TGG 0.341756 1_2:-2935837 Msa0049580:CDS
CCATCAAGAAACAATTTGAT+TGG 0.345168 1_2:-2935037 Msa0049580:CDS
ATCTTGATGCACAGCATAAA+GGG 0.347191 1_2:-2934623 Msa0049580:CDS
TAACCTTTGCGAGTTCTCTT+TGG 0.348817 1_2:-2936008 Msa0049580:CDS
CAAGAAACCATCCTTAATCT+TGG 0.356322 1_2:-2933252 Msa0049580:CDS
GTACCCTCAGTAAATAATTC+AGG 0.357209 1_2:-2935263 Msa0049580:CDS
ATGTCAGAGATTGCGCCTTC+TGG 0.357476 1_2:-2936386 Msa0049580:CDS
TACTACATCCTGAAGCCAAC+TGG 0.357862 1_2:+2935631 None:intergenic
AGTTATCAGTGACAAGTAAA+AGG 0.358696 1_2:-2936702 Msa0049580:CDS
TTCTGCATTGATTTCAGATT+CGG 0.358960 1_2:-2935930 Msa0049580:CDS
GATCTTGATGCACAGCATAA+AGG 0.362676 1_2:-2934624 Msa0049580:CDS
CCGCTTCCCGGTTTCTTAGT+AGG 0.365002 1_2:+2932868 None:intergenic
AATCTAGATCCGTGCGTCTT+TGG 0.365024 1_2:-2935521 Msa0049580:CDS
AAAGCATTACTCTTGAGAAT+TGG 0.371530 1_2:+2936116 None:intergenic
TCCGATCTCACCACCATTCC+AGG 0.374557 1_2:-2933003 Msa0049580:CDS
AAAGTATCGATTCTTCTATT+GGG 0.379720 1_2:+2936214 None:intergenic
GGCTTCAGGATGTAGTAAAA+AGG 0.380017 1_2:-2935625 Msa0049580:CDS
ACTTGTTCCTTCTTATTTCA+AGG 0.384785 1_2:+2936290 None:intergenic
TCTTCACTTGACAGTTCTCC+TGG 0.388800 1_2:-2936241 Msa0049580:CDS
AGTCTCATCACTTGTGCATA+AGG 0.390608 1_2:+2935286 None:intergenic
TGAAGAAAGAGTAGCCCATT+TGG 0.391774 1_2:-2936851 Msa0049580:CDS
ATGAAAATGTAAATGATGTT+TGG 0.396016 1_2:+2938256 None:intergenic
AGGTCTGGATGAAGCTTTGC+GGG 0.398196 1_2:-2936887 Msa0049580:CDS
TTCATAACTTTCAGGGGAGC+AGG 0.401277 1_2:+2933105 None:intergenic
TTCCAAAAGTTGATCCGTTA+AGG 0.403468 1_2:+2934749 None:intergenic
GGAGTCACGGTCACTTACTT+TGG 0.404277 1_2:+2933023 None:intergenic
TCATGGTTTGAGCCCTCCTT+TGG 0.414165 1_2:+2934376 None:intergenic
TTTGGTTCCGTCAAAGTCTC+TGG 0.415432 1_2:-2935503 Msa0049580:CDS
CATTGTACCTACTAAGAAAC+CGG 0.419244 1_2:-2932875 Msa0049580:CDS
TGTTGTGATGGTGGTGGTGG+TGG 0.424811 1_2:+2933146 None:intergenic
CTGACATTCTGATTCTAACT+TGG 0.426526 1_2:+2936402 None:intergenic
AAGGGAAAGAAGTGAAAAGA+TGG 0.429360 1_2:+2938357 None:intergenic
TGCGCCTTCTGGTTCGGAAA+CGG 0.432770 1_2:-2936375 Msa0049580:CDS
GAGTTGCAATTCCAGACATC+TGG 0.435090 1_2:+2934515 None:intergenic
CCTCAAGTAACTACTTCAAA+TGG 0.436735 1_2:-2934915 Msa0049580:CDS
CCTTCAGAGCTCCATCCAAA+TGG 0.438475 1_2:+2936836 None:intergenic
CATCAAGAAACAATTTGATT+GGG 0.442321 1_2:-2935036 Msa0049580:CDS
GTCACTTACTTTGGAAACCT+TGG 0.443153 1_2:+2933032 None:intergenic
GTCTTCGTGAGCTTGCTGTT+TGG 0.444123 1_2:+2935388 None:intergenic
CAGTGTTACTGCTAATGATT+TGG 0.444242 1_2:-2932923 Msa0049580:CDS
GTGGTGGATGTGGTACTGAT+AGG 0.446196 1_2:+2933162 None:intergenic
GACTACCCCTGATCACATTT+CGG 0.446440 1_2:-2935711 Msa0049580:CDS
AGCAAAAGTTGAAGTGTTGT+CGG 0.446874 1_2:-2936917 Msa0049580:CDS
AAAGAAGTTGATGAGATCAA+TGG 0.447443 1_2:-2935758 Msa0049580:CDS
AGAGATTGCGCCTTCTGGTT+CGG 0.447959 1_2:-2936381 Msa0049580:CDS
TCAGGATGTTTCTTGTATGA+AGG 0.449394 1_2:-2935063 Msa0049580:CDS
GTCAGTAATATTTACATCAC+TGG 0.452498 1_2:+2935430 None:intergenic
TGATAGGATTGAGTCCTTAA+CGG 0.453872 1_2:-2934763 Msa0049580:CDS
TTTGGTGAGAGAAAGAGAAA+AGG 0.455433 1_2:+2938338 None:intergenic
ATTGCACAAGAAGCAGTTGC+AGG 0.455974 1_2:-2937088 Msa0049580:intron
AACTAACAACAGCTTTGGAT+TGG 0.456338 1_2:-2935109 Msa0049580:CDS
TGAAGAACTAACAACAGCTT+TGG 0.456722 1_2:-2935114 Msa0049580:CDS
GTCTCATCACTTGTGCATAA+GGG 0.458049 1_2:+2935287 None:intergenic
TGTTGTTGTGATGGTGGTGG+TGG 0.459605 1_2:+2933143 None:intergenic
GTTAAACTCAACTAGTTCAA+TGG 0.460981 1_2:-2936269 Msa0049580:CDS
CTCTTTCTTCATAAACCAAT+CGG 0.462800 1_2:+2936863 None:intergenic
TCCAGAGGTTGTATAATGCC+TGG 0.464954 1_2:+2932985 None:intergenic
AAGAAACCATCCTTAATCTT+GGG 0.465020 1_2:-2933251 Msa0049580:CDS
CAACAGAGAGAGTGTGTGTT+TGG 0.466141 1_2:+2938320 None:intergenic
TTGGTGAGAGAAAGAGAAAA+GGG 0.470958 1_2:+2938339 None:intergenic
TGGGAAGCAGCTGAGGTCAT+TGG 0.471135 1_2:-2933232 Msa0049580:CDS
GATCAATGCTGAATCTCAAA+AGG 0.476356 1_2:-2934817 Msa0049580:CDS
GCGAAAGTGAGGCAGAGTTT+GGG 0.478219 1_2:-2935001 Msa0049580:CDS
CATTGTAACTACTAAGAAAC+CGG 0.478375 1_2:-2932899 Msa0049580:CDS
GTTGTCGGCGAAGCAAGGTC+TGG 0.478507 1_2:-2936902 Msa0049580:CDS
TCCAGGCATTATACAACCTC+TGG 0.478551 1_2:-2932986 Msa0049580:CDS
CTTCAGAAGTGGAAAACAAA+AGG 0.479195 1_2:-2935903 Msa0049580:CDS
ACCACCAAAGAGTTATTTGA+AGG 0.479471 1_2:+2935461 None:intergenic
AGAATTAGAGACCAGATGTC+TGG 0.480614 1_2:-2934526 Msa0049580:CDS
ATTAGAAAATAAGCTTGCTT+CGG 0.480813 1_2:-2937161 Msa0049580:CDS
AAAGTCTCTGGTCATATTGA+AGG 0.480911 1_2:-2935491 Msa0049580:CDS
CGGAAACGGTTACCAGGTCC+TGG 0.484770 1_2:-2936361 Msa0049580:CDS
GAAGACCTGAGTAAGTCAAT+AGG 0.484823 1_2:-2935371 Msa0049580:CDS
ATCTTCCCTTGATGAACTAA+AGG 0.486259 1_2:-2935663 Msa0049580:CDS
CTTGTTCCTTCTTATTTCAA+GGG 0.487122 1_2:+2936291 None:intergenic
TCATGGTCCTGCAGAAGCAT+TGG 0.487131 1_2:-2935878 Msa0049580:CDS
TGACGGAGTGAGTGTGTTGT+TGG 0.487446 1_2:+2938409 None:intergenic
TTAGCAGTAACACTGTCATC+TGG 0.489817 1_2:+2932931 None:intergenic
GAGGCAGAGTTTGGGATGAT+AGG 0.489992 1_2:-2934993 Msa0049580:CDS
GAGATGTCCGAAATGTGATC+AGG 0.490158 1_2:+2935704 None:intergenic
GTGGAAAACAAAAGGAATCA+TGG 0.494775 1_2:-2935895 Msa0049580:CDS
TGTTATCCTTTAGTTCATCA+AGG 0.494969 1_2:+2935657 None:intergenic
AGAATATTAGAGTAGCTTTG+AGG 0.496510 1_2:-2935553 Msa0049580:CDS
TGAAGCTCCAATGCTTCTGC+AGG 0.497457 1_2:+2935871 None:intergenic
AGAAGCATTATCTTTCTCAA+TGG 0.498267 1_2:+2936546 None:intergenic
GTTACCAGGTCCTGGTTCCC+TGG 0.500382 1_2:-2936353 Msa0049580:CDS
TGAAGCTTTGCGGGACCGAT+TGG 0.502334 1_2:-2936878 Msa0049580:CDS
AACCGGGAAGCGGAAGTTTG+TGG 0.503170 1_2:-2932858 Msa0049580:CDS
ACTTTCAGGGGAGCAGGGAT+AGG 0.504663 1_2:+2933111 None:intergenic
CTGGTTCGGAAACGGTTACC+AGG 0.505039 1_2:-2936367 Msa0049580:CDS
AATAATTCAGGAATGCCAAC+GGG 0.505739 1_2:-2935251 Msa0049580:CDS
TCTTTCCTATTGACTTACTC+AGG 0.507520 1_2:+2935366 None:intergenic
GAGATTCCCTTGAAATAAGA+AGG 0.508635 1_2:-2936297 Msa0049580:CDS
AACAGCCGCTTCAGAAAAGT+TGG 0.508979 1_2:-2933283 Msa0049580:CDS
AATTGCAACTCCAGCTTGAA+AGG 0.510120 1_2:-2934503 Msa0049580:intron
CCATTTGGATGGAGCTCTGA+AGG 0.512295 1_2:-2936836 Msa0049580:CDS
CTTCAGAGCTCCATCCAAAT+GGG 0.513136 1_2:+2936837 None:intergenic
ATCAGTGACAAGTAAAAGGC+TGG 0.515046 1_2:-2936698 Msa0049580:CDS
TGGTTCTCTTTATTGGTGAG+AGG 0.516501 1_2:+2935408 None:intergenic
ACTTTCAAGTGTTCAGTGGA+AGG 0.518015 1_2:+2932788 None:intergenic
CCTTAAAAGATTCCCTAAGT+AGG 0.521430 1_2:-2936153 Msa0049580:CDS
GTGTGTTATGATTTACTGAA+TGG 0.521589 1_2:-2935161 Msa0049580:CDS
ATAGGACTTACCTTTCAAGC+TGG 0.522101 1_2:+2934493 None:intergenic
AGCTTCAGACATAAATCTCA+TGG 0.522285 1_2:-2935855 Msa0049580:CDS
TCAATGGCTTCTCAGAAACT+AGG 0.522844 1_2:-2935742 Msa0049580:CDS
AAACATGGAAACTGTTCTGC+GGG 0.522978 1_2:+2934939 None:intergenic
AAGATGGGAAAGTGAAGAGT+GGG 0.524676 1_2:+2938373 None:intergenic
CGATTTGTTCGAGAAGAACA+AGG 0.524891 1_2:-2936796 Msa0049580:CDS
ACAATAGTAACTGCTGAAAA+CGG 0.525224 1_2:-2937641 Msa0049580:CDS
TCCTTCAAATAACTCTTTGG+TGG 0.527792 1_2:-2935462 Msa0049580:CDS
TGAGGTCCGAGTACTTGAAA+AGG 0.531107 1_2:-2936515 Msa0049580:CDS
CATAATGAAGAATCATCTAA+AGG 0.532662 1_2:-2936058 Msa0049580:CDS
GAGAAAGACACTGAAATCTC+TGG 0.532861 1_2:-2935791 Msa0049580:CDS
GGCTTCAATCAGCTACTGAT+AGG 0.532979 1_2:-2934779 Msa0049580:CDS
AATATGACCAGAGACTTTGA+CGG 0.533520 1_2:+2935496 None:intergenic
CTGCTTCCCAAGATTAAGGA+TGG 0.533937 1_2:+2933245 None:intergenic
GTGTAATTCTAAAGATGAGC+TGG 0.534506 1_2:-2937128 Msa0049580:CDS
AGGAATGCCAACGGGCTACA+TGG 0.535263 1_2:-2935243 Msa0049580:CDS
GAAAGAGTAGCCCATTTGGA+TGG 0.535573 1_2:-2936847 Msa0049580:CDS
AAGAATCAACTTGCCTGCCG+TGG 0.539762 1_2:-2935327 Msa0049580:CDS
AAAAGGGATGCATCCTTTGG+TGG 0.540639 1_2:+2933207 None:intergenic
GCCTGGAATGGTGGTGAGAT+CGG 0.542225 1_2:+2933002 None:intergenic
ATATTCTCGAGTATATCATC+AGG 0.542580 1_2:+2935569 None:intergenic
ATTCCTGAATTATTTACTGA+GGG 0.542973 1_2:+2935260 None:intergenic
CCGAGTACTTGAAAAGGAGT+TGG 0.546516 1_2:-2936509 Msa0049580:CDS
TTCGAGAAGAACAAGGGCAA+AGG 0.547361 1_2:-2936789 Msa0049580:CDS
AGGGAAAGAAGTGAAAAGAT+GGG 0.547589 1_2:+2938358 None:intergenic
GATTCGGAGCACTTCAGAAG+TGG 0.547858 1_2:-2935914 Msa0049580:CDS
ATTCTTCTATTGGGAGTCCC+AGG 0.550407 1_2:+2936223 None:intergenic
ATTAAAAGAGGTCGGTCTCA+AGG 0.553721 1_2:-2934595 Msa0049580:CDS
TTCTTAGTAGGTACAATGGC+CGG 0.554541 1_2:+2932880 None:intergenic
GATTCATGATGCTGTGATGA+AGG 0.557033 1_2:-2936767 Msa0049580:CDS
TGAATCTCAAAAGGAAACAT+TGG 0.560533 1_2:-2934808 Msa0049580:CDS
TGTTCTCAGCATGCCAAAGG+AGG 0.561256 1_2:-2934389 Msa0049580:intron
TAATGCTTCTCTGACATATG+AGG 0.561537 1_2:-2936533 Msa0049580:CDS
GAGGTCATTGGCTCCACCAA+AGG 0.561831 1_2:-2933220 Msa0049580:CDS
TGCTGTGATGAAGGCTTCAA+AGG 0.562296 1_2:-2936758 Msa0049580:CDS
TTTGCCAGGGAACCAGGACC+TGG 0.563279 1_2:+2936349 None:intergenic
GAAGTGTTGTCGGCGAAGCA+AGG 0.564546 1_2:-2936907 Msa0049580:CDS
CGGTTTCTTAGTAGGTACAA+TGG 0.565201 1_2:+2932876 None:intergenic
ATCTGAATTATCACAATCCA+CGG 0.569864 1_2:+2935310 None:intergenic
TCATAACTTTCAGGGGAGCA+GGG 0.570846 1_2:+2933106 None:intergenic
AAGGTCTGGATGAAGCTTTG+CGG 0.572407 1_2:-2936888 Msa0049580:CDS
ACTACATCCTGAAGCCAACT+GGG 0.574852 1_2:+2935632 None:intergenic
GAATTATCACAATCCACGGC+AGG 0.575539 1_2:+2935314 None:intergenic
CCATTTGAAGTAGTTACTTG+AGG 0.575575 1_2:+2934915 None:intergenic
AAAGATGGGAAAGTGAAGAG+TGG 0.576595 1_2:+2938372 None:intergenic
GTTATCCTTTAGTTCATCAA+GGG 0.578574 1_2:+2935658 None:intergenic
CATTCCTGAATTATTTACTG+AGG 0.578669 1_2:+2935259 None:intergenic
ATCTAAAGGTCAAGTTGCTG+TGG 0.578768 1_2:-2936044 Msa0049580:CDS
GGTTAGCTGTGCTGACTCCT+CGG 0.581274 1_2:-2935954 Msa0049580:CDS
AGATGTCCGAAATGTGATCA+GGG 0.583171 1_2:+2935705 None:intergenic
CGGTTTCTTAGTAGTTACAA+TGG 0.584722 1_2:+2932900 None:intergenic
CTTTCAAGTGTTCAGTGGAA+GGG 0.585485 1_2:+2932789 None:intergenic
CTTCACTTGACAGTTCTCCT+GGG 0.587869 1_2:-2936240 Msa0049580:CDS
TCGAGAGATGTATTCTGATG+AGG 0.588322 1_2:-2934871 Msa0049580:CDS
GGTGATAGTAAGTGTCGGCT+TGG 0.589706 1_2:+2938471 None:intergenic
TGAGACTTTCAAGTGTTCAG+TGG 0.591758 1_2:+2932784 None:intergenic
AGAATCTTATGGAATACTTG+AGG 0.592051 1_2:-2934679 Msa0049580:CDS
TTAATCTTGGGAAGCAGCTG+AGG 0.592805 1_2:-2933239 Msa0049580:CDS
GATAAACTTACAGTTCGCAA+TGG 0.595440 1_2:+2934334 None:intergenic
TCTCAAAAGGAAACATTGGA+AGG 0.596127 1_2:-2934804 Msa0049580:CDS
GTTCTCAGCATGCCAAAGGA+GGG 0.598290 1_2:-2934388 Msa0049580:intron
TGAAGATGATACTAAATCCA+AGG 0.601228 1_2:-2933049 Msa0049580:CDS
AAAAGAGTGCATGGTTTGGG+AGG 0.602469 1_2:-2936728 Msa0049580:CDS
TAAAGGATAACATTCCCAGT+TGG 0.608418 1_2:-2935646 Msa0049580:CDS
AAAGATAAAATCTTCTCCAG+AGG 0.609414 1_2:+2932970 None:intergenic
CCTACTAAGAAACCGGGAAG+CGG 0.611824 1_2:-2932868 Msa0049580:CDS
TGGTGGTGAGATCGGAGTCA+CGG 0.613950 1_2:+2933010 None:intergenic
CTCAAAAGGAAACATTGGAA+GGG 0.614996 1_2:-2934803 Msa0049580:CDS
AAATAATTCAGGAATGCCAA+CGG 0.615232 1_2:-2935252 Msa0049580:CDS
TTGTATAATGCCTGGAATGG+TGG 0.616953 1_2:+2932993 None:intergenic
TAAAGGGGCGGAATTAAAAG+AGG 0.618771 1_2:-2934607 Msa0049580:CDS
TAATGTTCTCAGCATGCCAA+AGG 0.619696 1_2:-2934392 Msa0049580:intron
GTAATATTTACATCACTGGA+TGG 0.620257 1_2:+2935434 None:intergenic
GTAGTTACTTGAGGAAAACA+TGG 0.620760 1_2:+2934924 None:intergenic
TCTCTAATTCTTCACAACTG+TGG 0.621010 1_2:+2934538 None:intergenic
TGGGAGTCAAGAGAAAATGA+CGG 0.622687 1_2:+2938392 None:intergenic
TGAGACACGAAGCGAAAGTG+AGG 0.623978 1_2:-2935012 Msa0049580:CDS
TGAAATCAATGCAGAAGCCG+AGG 0.632280 1_2:+2935937 None:intergenic
TTATGATTTACTGAATGGCA+AGG 0.634162 1_2:-2935156 Msa0049580:CDS
GAGAAACATCAGCTGTCCGA+CGG 0.634574 1_2:+2936458 None:intergenic
AAAAGGAAACATTGGAAGGG+CGG 0.636835 1_2:-2934800 Msa0049580:CDS
AAGAGAGAGAATTTGGCCGT+CGG 0.643970 1_2:-2936474 Msa0049580:CDS
ACACGGACCATGTAGCCCGT+TGG 0.651352 1_2:+2935236 None:intergenic
GGGGCGGAATTAAAAGAGGT+CGG 0.656076 1_2:-2934603 Msa0049580:CDS
AAAACATGGAAACTGTTCTG+CGG 0.658488 1_2:+2934938 None:intergenic
GATTTGTTCGAGAAGAACAA+GGG 0.659287 1_2:-2936795 Msa0049580:CDS
AAAACAATTGACTCAAGCTG+AGG 0.660596 1_2:-2936602 Msa0049580:CDS
AGGTTGTATAATGCCTGGAA+TGG 0.662462 1_2:+2932990 None:intergenic
TCTTGATGCACAGCATAAAG+GGG 0.662787 1_2:-2934622 Msa0049580:CDS
TGATATTGGCAGTGATGACA+AGG 0.666015 1_2:-2935975 Msa0049580:CDS
TTGTTGGTGAGAACAGAGAG+AGG 0.669117 1_2:+2938425 None:intergenic
ATTGTACCTACTAAGAAACC+GGG 0.677949 1_2:-2932874 Msa0049580:CDS
ATGCCAAAGAGAACTCGCAA+AGG 0.678638 1_2:+2936005 None:intergenic
TGATGCACAGCATAAAGGGG+CGG 0.680634 1_2:-2934619 Msa0049580:CDS
TTGACGGAACCAAAGACGCA+CGG 0.681223 1_2:+2935512 None:intergenic
CACTTCAAAAGAAAATGGAG+AGG 0.682330 1_2:-2937612 Msa0049580:intron
AGGGTGGTGATAGTAAGTGT+CGG 0.685730 1_2:+2938466 None:intergenic
GTAACCGTTTCCGAACCAGA+AGG 0.688384 1_2:+2936371 None:intergenic
GATGTCCGAAATGTGATCAG+GGG 0.709099 1_2:+2935706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATAGAAAGAAAA+TGG + chr1_2:2933011-2933030 None:intergenic 10.0%
!! AGATAAATAAATGAATAAAA+AGG + chr1_2:2933693-2933712 None:intergenic 10.0%
!! GAAGAAATTAAAAATATTAA+AGG - chr1_2:2936288-2936307 Msa0049580:CDS 10.0%
!!! TGTTTTATAAATTACAAATT+AGG - chr1_2:2936957-2936976 Msa0049580:intron 10.0%
!!! GTTTTATAAATTACAAATTA+GGG - chr1_2:2936958-2936977 Msa0049580:intron 10.0%
!!! TTTTAGATGTTTTTATGAAA+TGG - chr1_2:2933241-2933260 Msa0049580:CDS 15.0%
!!! TTTAGATGTTTTTATGAAAT+GGG - chr1_2:2933242-2933261 Msa0049580:CDS 15.0%
!!! TTATCATTTTCCAATTATTA+TGG - chr1_2:2933610-2933629 Msa0049580:intron 15.0%
!! AAATAAATGAATAAAAAGGA+TGG + chr1_2:2933689-2933708 None:intergenic 15.0%
!! TTAATTAGATTGTAAAATGT+AGG - chr1_2:2933827-2933846 Msa0049580:intron 15.0%
!!! AAAATAATTGGTATGTTTTT+TGG - chr1_2:2933880-2933899 Msa0049580:intron 15.0%
!!! TATTTTTAGAGTTCTTTTAA+CGG - chr1_2:2934159-2934178 Msa0049580:intron 15.0%
!!! TAACTTTTAATTTCTAATTG+AGG - chr1_2:2936701-2936720 Msa0049580:CDS 15.0%
!! GTGTAAAAAGTTGTAAAAAA+GGG + chr1_2:2932690-2932709 None:intergenic 20.0%
!! ATGAAAATGTAAATGATGTT+TGG + chr1_2:2932881-2932900 None:intergenic 20.0%
!!! TCTAATGAAATTTGAGATTA+AGG + chr1_2:2932976-2932995 None:intergenic 20.0%
!! TTAATCTCAAATTTCATTAG+AGG - chr1_2:2932975-2932994 Msa0049580:CDS 20.0%
!! AAAAATAGAAAGAAAATGGA+AGG + chr1_2:2933007-2933026 None:intergenic 20.0%
!! TGTTAGTACTATACTTATAA+TGG - chr1_2:2933071-2933090 Msa0049580:CDS 20.0%
!!! ACTTTTTTTCTCGTTATTTT+CGG - chr1_2:2933110-2933129 Msa0049580:CDS 20.0%
!!! TATTTTATTTTAGTGTGAAC+CGG - chr1_2:2933171-2933190 Msa0049580:CDS 20.0%
!!! TGTTTTTTTGTCTTTTTTTG+TGG - chr1_2:2933308-2933327 Msa0049580:intron 20.0%
!! TTACAACATACCATAATAAT+TGG + chr1_2:2933623-2933642 None:intergenic 20.0%
!! AAAAAATGAAAGAATCTTCT+TGG + chr1_2:2933786-2933805 None:intergenic 20.0%
!!! GATTCTTTCATTTTTTTCTT+AGG - chr1_2:2933790-2933809 Msa0049580:intron 20.0%
!!! ATGTAGGAAATAATTTTTTG+AGG - chr1_2:2933843-2933862 Msa0049580:intron 20.0%
!! CTACTTGTGATAAAAATAAT+TGG - chr1_2:2933868-2933887 Msa0049580:intron 20.0%
!! AAAAATGAAGTTGAAATGTT+AGG - chr1_2:2934812-2934831 Msa0049580:CDS 20.0%
!!! TATTCCATAAGATTCTTTTA+AGG + chr1_2:2936451-2936470 None:intergenic 20.0%
!! TCAAACAAATATTTGAAGAT+AGG + chr1_2:2936662-2936681 None:intergenic 20.0%
!! TTCAAACTAATTTGAATAGA+AGG - chr1_2:2937165-2937184 Msa0049580:CDS 20.0%
!! AATAAAAATTGATACCTAGA+TGG + chr1_2:2937456-2937475 None:intergenic 20.0%
!! AATCAGAAGATAACAAAAAT+AGG + chr1_2:2937489-2937508 None:intergenic 20.0%
!! ATAATTCAATTTGACAACAT+TGG + chr1_2:2937767-2937786 None:intergenic 20.0%
!!! ATTCTTTTTCATAACTTTCA+GGG + chr1_2:2938039-2938058 None:intergenic 20.0%
! TAAAAAGTTGTAAAAAAGGG+TGG + chr1_2:2932687-2932706 None:intergenic 25.0%
! GGTGTAAAAAGTTGTAAAAA+AGG + chr1_2:2932691-2932710 None:intergenic 25.0%
!! CAATGTCTTTTATGTATGAA+AGG + chr1_2:2933041-2933060 None:intergenic 25.0%
!!! ATTTTATTTTAGTGTGAACC+GGG - chr1_2:2933172-2933191 Msa0049580:CDS 25.0%
!!! TTGATGATTTGTTTTTTCTG+AGG - chr1_2:2933379-2933398 Msa0049580:intron 25.0%
! AATCTCACTTCAAAAGAAAA+TGG - chr1_2:2933517-2933536 Msa0049580:intron 25.0%
! TTATATCATGATGATTACGT+TGG - chr1_2:2933653-2933672 Msa0049580:intron 25.0%
! TCTAATTAATTCAGCACAAA+GGG + chr1_2:2933816-2933835 None:intergenic 25.0%
! ATCTAATTAATTCAGCACAA+AGG + chr1_2:2933817-2933836 None:intergenic 25.0%
!! ATTAGAAAATAAGCTTGCTT+CGG - chr1_2:2933973-2933992 Msa0049580:intron 25.0%
! AAAAATACTTCAGTCATAAG+TGG + chr1_2:2934146-2934165 None:intergenic 25.0%
! TCAAAGAGAAAAATTGATTG+AGG - chr1_2:2934502-2934521 Msa0049580:intron 25.0%
!!! TTCATTTTTCATTTTTGCCA+GGG + chr1_2:2934801-2934820 None:intergenic 25.0%
!!! AAAGTATCGATTCTTCTATT+GGG + chr1_2:2934923-2934942 None:intergenic 25.0%
! CATAATGAAGAATCATCTAA+AGG - chr1_2:2935076-2935095 Msa0049580:CDS 25.0%
! ATTCCTGAATTATTTACTGA+GGG + chr1_2:2935877-2935896 None:intergenic 25.0%
! CATCAAGAAACAATTTGATT+GGG - chr1_2:2936098-2936117 Msa0049580:CDS 25.0%
! CAATCCTTAAAAGAATCTTA+TGG - chr1_2:2936444-2936463 Msa0049580:CDS 25.0%
! AATATTCCAGAGTTTAACAT+AGG + chr1_2:2936872-2936891 None:intergenic 25.0%
! ATTCCTAATTGAAATAGTCT+TGG - chr1_2:2937301-2937320 Msa0049580:intron 25.0%
! TTTCACAGTGAAAACAAAAT+GGG + chr1_2:2937410-2937429 None:intergenic 25.0%
!! TTTTCACAGTGAAAACAAAA+TGG + chr1_2:2937411-2937430 None:intergenic 25.0%
!! CATTTAATTAGTTTCCATCT+AGG - chr1_2:2937439-2937458 Msa0049580:intron 25.0%
!! TATCTAACAGTTTCTTGTTT+CGG + chr1_2:2937536-2937555 None:intergenic 25.0%
! TCCAGTATAATTGTAAATGA+TGG - chr1_2:2937584-2937603 Msa0049580:intron 25.0%
! ACCATCATTTACAATTATAC+TGG + chr1_2:2937588-2937607 None:intergenic 25.0%
!!! TTTTTAGTCAATCATACACA+TGG + chr1_2:2937726-2937745 None:intergenic 25.0%
! TGTCAAATTGAATTATGAGT+TGG - chr1_2:2937771-2937790 Msa0049580:intron 25.0%
! TGCAATAACATTGTCAAAAA+GGG + chr1_2:2937946-2937965 None:intergenic 25.0%
!!! TTCTTTTTCATAACTTTCAG+GGG + chr1_2:2938038-2938057 None:intergenic 25.0%
!!! GATTCTTTTTCATAACTTTC+AGG + chr1_2:2938040-2938059 None:intergenic 25.0%
! GTCTCTTCAATAAAAAATAC+AGG + chr1_2:2938441-2938460 None:intergenic 25.0%
TTACATTCTTCGTAGCATTA+TGG - chr1_2:2933429-2933448 Msa0049580:intron 30.0%
ACAATAGTAACTGCTGAAAA+CGG - chr1_2:2933493-2933512 Msa0049580:intron 30.0%
!! GGTTTGATTTTTCGTGTTTT+AGG - chr1_2:2933901-2933920 Msa0049580:intron 30.0%
TCTTGCTGATAAAGAAGAAT+TGG - chr1_2:2933934-2933953 Msa0049580:intron 30.0%
GTGTTAAAATCTTGCTTTGA+AGG - chr1_2:2934185-2934204 Msa0049580:intron 30.0%
CTCTTTCTTCATAAACCAAT+CGG + chr1_2:2934274-2934293 None:intergenic 30.0%
AGTTATCAGTGACAAGTAAA+AGG - chr1_2:2934432-2934451 Msa0049580:intron 30.0%
!! AGAAGCATTATCTTTCTCAA+TGG + chr1_2:2934591-2934610 None:intergenic 30.0%
CAAATTCTCTCTCTTCATTT+CGG + chr1_2:2934655-2934674 None:intergenic 30.0%
!! CTTCATTTTTCATTTTTGCC+AGG + chr1_2:2934802-2934821 None:intergenic 30.0%
! CTTGTTCCTTCTTATTTCAA+GGG + chr1_2:2934846-2934865 None:intergenic 30.0%
! ACTTGTTCCTTCTTATTTCA+AGG + chr1_2:2934847-2934866 None:intergenic 30.0%
GTTAAACTCAACTAGTTCAA+TGG - chr1_2:2934865-2934884 Msa0049580:CDS 30.0%
!! CAAAGTATCGATTCTTCTAT+TGG + chr1_2:2934924-2934943 None:intergenic 30.0%
! CTCATTCATTTTCCTACTTA+GGG + chr1_2:2934996-2935015 None:intergenic 30.0%
! AAAGCATTACTCTTGAGAAT+TGG + chr1_2:2935021-2935040 None:intergenic 30.0%
!! TTCTGCATTGATTTCAGATT+CGG - chr1_2:2935204-2935223 Msa0049580:CDS 30.0%
TGAAATGGAAAAATTAGCAG+TGG - chr1_2:2935312-2935331 Msa0049580:CDS 30.0%
!! AAAGAAGTTGATGAGATCAA+TGG - chr1_2:2935376-2935395 Msa0049580:CDS 30.0%
! GTTATCCTTTAGTTCATCAA+GGG + chr1_2:2935479-2935498 None:intergenic 30.0%
! TGTTATCCTTTAGTTCATCA+AGG + chr1_2:2935480-2935499 None:intergenic 30.0%
ATATTCTCGAGTATATCATC+AGG + chr1_2:2935568-2935587 None:intergenic 30.0%
! AGAATATTAGAGTAGCTTTG+AGG - chr1_2:2935581-2935600 Msa0049580:CDS 30.0%
TGATCCTTCAAATAACTCTT+TGG - chr1_2:2935669-2935688 Msa0049580:CDS 30.0%
GTAATATTTACATCACTGGA+TGG + chr1_2:2935703-2935722 None:intergenic 30.0%
GTCAGTAATATTTACATCAC+TGG + chr1_2:2935707-2935726 None:intergenic 30.0%
ATCTGAATTATCACAATCCA+CGG + chr1_2:2935827-2935846 None:intergenic 30.0%
CATTCCTGAATTATTTACTG+AGG + chr1_2:2935878-2935897 None:intergenic 30.0%
AAATAATTCAGGAATGCCAA+CGG - chr1_2:2935882-2935901 Msa0049580:CDS 30.0%
! ATGTTTTCCATTGGAAAACA+CGG + chr1_2:2935918-2935937 None:intergenic 30.0%
GTGTGTTATGATTTACTGAA+TGG - chr1_2:2935973-2935992 Msa0049580:CDS 30.0%
TTATGATTTACTGAATGGCA+AGG - chr1_2:2935978-2935997 Msa0049580:CDS 30.0%
! CCAATCAAATTGTTTCTTGA+TGG + chr1_2:2936100-2936119 None:intergenic 30.0%
CCATCAAGAAACAATTTGAT+TGG - chr1_2:2936097-2936116 Msa0049580:CDS 30.0%
TGAATCTCAAAAGGAAACAT+TGG - chr1_2:2936326-2936345 Msa0049580:CDS 30.0%
AGAATCTTATGGAATACTTG+AGG - chr1_2:2936455-2936474 Msa0049580:CDS 30.0%
!! TGTCTTTCTGGTTAATATCA+TGG + chr1_2:2936778-2936797 None:intergenic 30.0%
ACTATGAGTCATTGAGAAAA+AGG + chr1_2:2936836-2936855 None:intergenic 30.0%
! CGAGATGTAACTTTTGTATA+GGG + chr1_2:2936919-2936938 None:intergenic 30.0%
! TCGAGATGTAACTTTTGTAT+AGG + chr1_2:2936920-2936939 None:intergenic 30.0%
AAATTAGGGATATCCCAATT+TGG - chr1_2:2936972-2936991 Msa0049580:intron 30.0%
TTCAATGCTTACTCCAAATT+GGG + chr1_2:2936988-2937007 None:intergenic 30.0%
!! TCTCTGAAACATACAATGTA+CGG - chr1_2:2937028-2937047 Msa0049580:intron 30.0%
TTGGAATTAAACATACCTAC+AGG - chr1_2:2937095-2937114 Msa0049580:CDS 30.0%
GAGATATGTTAATGCTTTGT+TGG - chr1_2:2937207-2937226 Msa0049580:CDS 30.0%
! ATATGTTAATGCTTTGTTGG+TGG - chr1_2:2937210-2937229 Msa0049580:CDS 30.0%
! TATGTTAATGCTTTGTTGGT+GGG - chr1_2:2937211-2937230 Msa0049580:CDS 30.0%
TCTATAACTTCCAACTTTCA+AGG - chr1_2:2937259-2937278 Msa0049580:intron 30.0%
! GTTTTTGTTACCTTGAAAGT+TGG + chr1_2:2937272-2937291 None:intergenic 30.0%
TCAAGGTAACAAAAACTTAC+AGG - chr1_2:2937276-2937295 Msa0049580:intron 30.0%
! ATCTAACAGTTTCTTGTTTC+GGG + chr1_2:2937535-2937554 None:intergenic 30.0%
AAACATCAAACCTGAATTAG+GGG + chr1_2:2937656-2937675 None:intergenic 30.0%
CAAACATCAAACCTGAATTA+GGG + chr1_2:2937657-2937676 None:intergenic 30.0%
!!! TATGAGTTGGTTTTTCATGT+TGG - chr1_2:2937784-2937803 Msa0049580:intron 30.0%
AAGAAACCATCCTTAATCTT+GGG - chr1_2:2937883-2937902 Msa0049580:intron 30.0%
CTGCAATAACATTGTCAAAA+AGG + chr1_2:2937947-2937966 None:intergenic 30.0%
!!! ATTCGTTTTTGTTGTTGTGA+TGG + chr1_2:2938003-2938022 None:intergenic 30.0%
TGAAGATGATACTAAATCCA+AGG - chr1_2:2938085-2938104 Msa0049580:intron 30.0%
AAAGATAAAATCTTCTCCAG+AGG + chr1_2:2938167-2938186 None:intergenic 30.0%
CATTGTAACTACTAAGAAAC+CGG - chr1_2:2938235-2938254 Msa0049580:five_prime_UTR 30.0%
GTTTGTGGAAGAAGTTATTA+TGG - chr1_2:2938291-2938310 Msa0049580:five_prime_UTR 30.0%
! TTTTATTGAAGAGACTTGTC+TGG - chr1_2:2938446-2938465 Msa0049580:five_prime_UTR 30.0%
AGGGAAAGAAGTGAAAAGAT+GGG + chr1_2:2932779-2932798 None:intergenic 35.0%
AAGGGAAAGAAGTGAAAAGA+TGG + chr1_2:2932780-2932799 None:intergenic 35.0%
TTGGTGAGAGAAAGAGAAAA+GGG + chr1_2:2932798-2932817 None:intergenic 35.0%
TTTGGTGAGAGAAAGAGAAA+AGG + chr1_2:2932799-2932818 None:intergenic 35.0%
CACTTCAAAAGAAAATGGAG+AGG - chr1_2:2933522-2933541 Msa0049580:intron 35.0%
! GTGTAATTCTAAAGATGAGC+TGG - chr1_2:2934006-2934025 Msa0049580:intron 35.0%
TATTGTTCGCCTTGTAAACT+TGG - chr1_2:2934101-2934120 Msa0049580:intron 35.0%
! TTTTCACGTCCAAGTTTACA+AGG + chr1_2:2934113-2934132 None:intergenic 35.0%
!! AAAATCTTGCTTTGAAGGCT+TGG - chr1_2:2934190-2934209 Msa0049580:intron 35.0%
!! AGCAAAAGTTGAAGTGTTGT+CGG - chr1_2:2934217-2934236 Msa0049580:intron 35.0%
! GATTTGTTCGAGAAGAACAA+GGG - chr1_2:2934339-2934358 Msa0049580:intron 35.0%
! GGAATTTGAAAAAGAGTGCA+TGG - chr1_2:2934397-2934416 Msa0049580:intron 35.0%
! TTGAAAAAGAGTGCATGGTT+TGG - chr1_2:2934402-2934421 Msa0049580:intron 35.0%
! TGAAAAAGAGTGCATGGTTT+GGG - chr1_2:2934403-2934422 Msa0049580:intron 35.0%
! AAAACAATTGACTCAAGCTG+AGG - chr1_2:2934532-2934551 Msa0049580:CDS 35.0%
TAATGCTTCTCTGACATATG+AGG - chr1_2:2934601-2934620 Msa0049580:CDS 35.0%
CGAAATGAAGAGAGAGAATT+TGG - chr1_2:2934653-2934672 Msa0049580:CDS 35.0%
CTGACATTCTGATTCTAACT+TGG + chr1_2:2934735-2934754 None:intergenic 35.0%
GAGATTCCCTTGAAATAAGA+AGG - chr1_2:2934837-2934856 Msa0049580:CDS 35.0%
! CCTACTTAGGGAATCTTTTA+AGG + chr1_2:2934984-2935003 None:intergenic 35.0%
CCTTAAAAGATTCCCTAAGT+AGG - chr1_2:2934981-2935000 Msa0049580:CDS 35.0%
! GCTCATTCATTTTCCTACTT+AGG + chr1_2:2934997-2935016 None:intergenic 35.0%
TTGGCATCAATGTCTGATAT+TGG - chr1_2:2935145-2935164 Msa0049580:CDS 35.0%
CTTCAGAAGTGGAAAACAAA+AGG - chr1_2:2935231-2935250 Msa0049580:CDS 35.0%
GTGGAAAACAAAAGGAATCA+TGG - chr1_2:2935239-2935258 Msa0049580:CDS 35.0%
AGCTTCAGACATAAATCTCA+TGG - chr1_2:2935279-2935298 Msa0049580:CDS 35.0%
CATGGATGACTTTGTTGAAA+TGG - chr1_2:2935297-2935316 Msa0049580:CDS 35.0%
ATCTTCCCTTGATGAACTAA+AGG - chr1_2:2935471-2935490 Msa0049580:CDS 35.0%
TAAAGGATAACATTCCCAGT+TGG - chr1_2:2935488-2935507 Msa0049580:CDS 35.0%
AATATGACCAGAGACTTTGA+CGG + chr1_2:2935641-2935660 None:intergenic 35.0%
AAAGTCTCTGGTCATATTGA+AGG - chr1_2:2935643-2935662 Msa0049580:CDS 35.0%
TCCTTCAAATAACTCTTTGG+TGG - chr1_2:2935672-2935691 Msa0049580:CDS 35.0%
ACCACCAAAGAGTTATTTGA+AGG + chr1_2:2935676-2935695 None:intergenic 35.0%
!! TGCTGTTTGGTTCTCTTTAT+TGG + chr1_2:2935736-2935755 None:intergenic 35.0%
!! TCTTTCCTATTGACTTACTC+AGG + chr1_2:2935771-2935790 None:intergenic 35.0%
GTACCCTCAGTAAATAATTC+AGG - chr1_2:2935871-2935890 Msa0049580:CDS 35.0%
AATAATTCAGGAATGCCAAC+GGG - chr1_2:2935883-2935902 Msa0049580:CDS 35.0%
! TGAGTTCAGATGTTTTCCAT+TGG + chr1_2:2935927-2935946 None:intergenic 35.0%
TGAAGAACTAACAACAGCTT+TGG - chr1_2:2936020-2936039 Msa0049580:CDS 35.0%
!! AACTAACAACAGCTTTGGAT+TGG - chr1_2:2936025-2936044 Msa0049580:CDS 35.0%
!! GAATCACTGTTTTTCACTTC+AGG - chr1_2:2936053-2936072 Msa0049580:CDS 35.0%
TCAGGATGTTTCTTGTATGA+AGG - chr1_2:2936071-2936090 Msa0049580:CDS 35.0%
AAAACATGGAAACTGTTCTG+CGG + chr1_2:2936199-2936218 None:intergenic 35.0%
GTAGTTACTTGAGGAAAACA+TGG + chr1_2:2936213-2936232 None:intergenic 35.0%
! CCATTTGAAGTAGTTACTTG+AGG + chr1_2:2936222-2936241 None:intergenic 35.0%
CCTCAAGTAACTACTTCAAA+TGG - chr1_2:2936219-2936238 Msa0049580:CDS 35.0%
GATCAATGCTGAATCTCAAA+AGG - chr1_2:2936317-2936336 Msa0049580:CDS 35.0%
TCTCAAAAGGAAACATTGGA+AGG - chr1_2:2936330-2936349 Msa0049580:CDS 35.0%
CTCAAAAGGAAACATTGGAA+GGG - chr1_2:2936331-2936350 Msa0049580:CDS 35.0%
TGATAGGATTGAGTCCTTAA+CGG - chr1_2:2936371-2936390 Msa0049580:CDS 35.0%
! TTCCAAAAGTTGATCCGTTA+AGG + chr1_2:2936388-2936407 None:intergenic 35.0%
ATCTTGATGCACAGCATAAA+GGG - chr1_2:2936511-2936530 Msa0049580:CDS 35.0%
!!! CAAGGTTTTGGAATTAGAAG+TGG - chr1_2:2936557-2936576 Msa0049580:CDS 35.0%
TCTCTAATTCTTCACAACTG+TGG + chr1_2:2936599-2936618 None:intergenic 35.0%
GATAAACTTACAGTTCGCAA+TGG + chr1_2:2936803-2936822 None:intergenic 35.0%
CTAGTTCCTATGTTAAACTC+TGG - chr1_2:2936863-2936882 Msa0049580:CDS 35.0%
GTTCAATGCTTACTCCAAAT+TGG + chr1_2:2936989-2937008 None:intergenic 35.0%
AATTCCAATCATCTACCAGA+AGG + chr1_2:2937083-2937102 None:intergenic 35.0%
CACATAATATCGAAGAACCA+AGG + chr1_2:2937127-2937146 None:intergenic 35.0%
TAAATGATGGTCGACTGATA+TGG - chr1_2:2937597-2937616 Msa0049580:intron 35.0%
GACTGATATGGTTTAGAAAG+TGG - chr1_2:2937609-2937628 Msa0049580:intron 35.0%
CCAAACATCAAACCTGAATT+AGG + chr1_2:2937658-2937677 None:intergenic 35.0%
! CCTAATTCAGGTTTGATGTT+TGG - chr1_2:2937655-2937674 Msa0049580:CDS 35.0%
ATCATACACATGGAGATAAG+TGG + chr1_2:2937716-2937735 None:intergenic 35.0%
CAAGAAACCATCCTTAATCT+TGG - chr1_2:2937882-2937901 Msa0049580:intron 35.0%
! CAGTGTTACTGCTAATGATT+TGG - chr1_2:2938211-2938230 Msa0049580:five_prime_UTR 35.0%
CGGTTTCTTAGTAGTTACAA+TGG + chr1_2:2938237-2938256 None:intergenic 35.0%
CATTGTACCTACTAAGAAAC+CGG - chr1_2:2938259-2938278 Msa0049580:five_prime_UTR 35.0%
ATTGTACCTACTAAGAAACC+GGG - chr1_2:2938260-2938279 Msa0049580:five_prime_UTR 35.0%
!!! TGTCGGCTTGGTTGTTTTAT+TGG + chr1_2:2932654-2932673 None:intergenic 40.0%
TGGGAGTCAAGAGAAAATGA+CGG + chr1_2:2932745-2932764 None:intergenic 40.0%
AAGATGGGAAAGTGAAGAGT+GGG + chr1_2:2932764-2932783 None:intergenic 40.0%
AAAGATGGGAAAGTGAAGAG+TGG + chr1_2:2932765-2932784 None:intergenic 40.0%
GCATTATGGATCAAAAACCG+TGG - chr1_2:2933443-2933462 Msa0049580:intron 40.0%
!! TCTGATGACTTTTTCCTCCA+AGG + chr1_2:2933469-2933488 None:intergenic 40.0%
TGAAGAAAGAGTAGCCCATT+TGG - chr1_2:2934283-2934302 Msa0049580:intron 40.0%
! CGATTTGTTCGAGAAGAACA+AGG - chr1_2:2934338-2934357 Msa0049580:intron 40.0%
GATTCATGATGCTGTGATGA+AGG - chr1_2:2934367-2934386 Msa0049580:CDS 40.0%
ATCAGTGACAAGTAAAAGGC+TGG - chr1_2:2934436-2934455 Msa0049580:intron 40.0%
!!! CCAACTCCTTTTCAAGTACT+CGG + chr1_2:2934628-2934647 None:intergenic 40.0%
!!! GGCTTTGTTTTCTTCTTCGA+CGG + chr1_2:2934963-2934982 None:intergenic 40.0%
! ATCTAAAGGTCAAGTTGCTG+TGG - chr1_2:2935090-2935109 Msa0049580:CDS 40.0%
TAACCTTTGCGAGTTCTCTT+TGG - chr1_2:2935126-2935145 Msa0049580:CDS 40.0%
TGATATTGGCAGTGATGACA+AGG - chr1_2:2935159-2935178 Msa0049580:CDS 40.0%
GAGAAAGACACTGAAATCTC+TGG - chr1_2:2935343-2935362 Msa0049580:CDS 40.0%
TCAATGGCTTCTCAGAAACT+AGG - chr1_2:2935392-2935411 Msa0049580:CDS 40.0%
AGATGTCCGAAATGTGATCA+GGG + chr1_2:2935432-2935451 None:intergenic 40.0%
GGCTTCAGGATGTAGTAAAA+AGG - chr1_2:2935509-2935528 Msa0049580:CDS 40.0%
GGATGTAGTAAAAAGGATCC+TGG - chr1_2:2935516-2935535 Msa0049580:CDS 40.0%
! CAGGATTTTTGTGAGTGACA+TGG + chr1_2:2935549-2935568 None:intergenic 40.0%
TGGTTCTCTTTATTGGTGAG+AGG + chr1_2:2935729-2935748 None:intergenic 40.0%
GAAGACCTGAGTAAGTCAAT+AGG - chr1_2:2935763-2935782 Msa0049580:CDS 40.0%
GTCTCATCACTTGTGCATAA+GGG + chr1_2:2935850-2935869 None:intergenic 40.0%
AGTCTCATCACTTGTGCATA+AGG + chr1_2:2935851-2935870 None:intergenic 40.0%
!! GGATGATAGGTCATTTTGCA+GGG - chr1_2:2936154-2936173 Msa0049580:CDS 40.0%
!! GATGATAGGTCATTTTGCAG+GGG - chr1_2:2936155-2936174 Msa0049580:CDS 40.0%
AAACATGGAAACTGTTCTGC+GGG + chr1_2:2936198-2936217 None:intergenic 40.0%
TCGAGAGATGTATTCTGATG+AGG - chr1_2:2936263-2936282 Msa0049580:CDS 40.0%
AAAAGGAAACATTGGAAGGG+CGG - chr1_2:2936334-2936353 Msa0049580:CDS 40.0%
!! GTCCTTAACGGATCAACTTT+TGG - chr1_2:2936383-2936402 Msa0049580:CDS 40.0%
GATCTTGATGCACAGCATAA+AGG - chr1_2:2936510-2936529 Msa0049580:CDS 40.0%
TCTTGATGCACAGCATAAAG+GGG - chr1_2:2936512-2936531 Msa0049580:CDS 40.0%
TAAAGGGGCGGAATTAAAAG+AGG - chr1_2:2936527-2936546 Msa0049580:CDS 40.0%
ATTAAAAGAGGTCGGTCTCA+AGG - chr1_2:2936539-2936558 Msa0049580:CDS 40.0%
AGAATTAGAGACCAGATGTC+TGG - chr1_2:2936608-2936627 Msa0049580:CDS 40.0%
AATTGCAACTCCAGCTTGAA+AGG - chr1_2:2936631-2936650 Msa0049580:CDS 40.0%
ATAGGACTTACCTTTCAAGC+TGG + chr1_2:2936644-2936663 None:intergenic 40.0%
GGCATGCTGAGAACATTAAT+TGG + chr1_2:2936740-2936759 None:intergenic 40.0%
TAATGTTCTCAGCATGCCAA+AGG - chr1_2:2936742-2936761 Msa0049580:CDS 40.0%
GATATTACCGCACCATGATT+TGG - chr1_2:2937055-2937074 Msa0049580:intron 40.0%
TACCAGAAGGAACCAAATCA+TGG + chr1_2:2937070-2937089 None:intergenic 40.0%
GCGCCAAGACTATTTCAATT+AGG + chr1_2:2937307-2937326 None:intergenic 40.0%
!! TTAATTCTGAAGCTGCCTCT+AGG + chr1_2:2937381-2937400 None:intergenic 40.0%
! TCTTGTTTCGGGCATATTAG+AGG + chr1_2:2937524-2937543 None:intergenic 40.0%
CAGGTTTGATGTTTGGAGAT+TGG - chr1_2:2937662-2937681 Msa0049580:CDS 40.0%
AGATTGGCAATCGACAAGTT+AGG - chr1_2:2937678-2937697 Msa0049580:CDS 40.0%
GATTGGCAATCGACAAGTTA+GGG - chr1_2:2937679-2937698 Msa0049580:CDS 40.0%
!! AGAGTGTTGCTAAATCCTAC+AGG - chr1_2:2937818-2937837 Msa0049580:intron 40.0%
TTGCTAAATCCTACAGGACT+TGG - chr1_2:2937824-2937843 Msa0049580:intron 40.0%
TCAAAAAGGGATGCATCCTT+TGG + chr1_2:2937933-2937952 None:intergenic 40.0%
!!! TTTTGTTGTTGTGATGGTGG+TGG + chr1_2:2937997-2938016 None:intergenic 40.0%
!!! CGTTTTTGTTGTTGTGATGG+TGG + chr1_2:2938000-2938019 None:intergenic 40.0%
! GTCACTTACTTTGGAAACCT+TGG + chr1_2:2938105-2938124 None:intergenic 40.0%
TTGTATAATGCCTGGAATGG+TGG + chr1_2:2938144-2938163 None:intergenic 40.0%
AGGTTGTATAATGCCTGGAA+TGG + chr1_2:2938147-2938166 None:intergenic 40.0%
TTAGCAGTAACACTGTCATC+TGG + chr1_2:2938206-2938225 None:intergenic 40.0%
TTCTTAGTAGGTACAATGGC+CGG + chr1_2:2938257-2938276 None:intergenic 40.0%
CGGTTTCTTAGTAGGTACAA+TGG + chr1_2:2938261-2938280 None:intergenic 40.0%
! TGGAAGGGATGTTTTCATGT+TGG + chr1_2:2938333-2938352 None:intergenic 40.0%
! CTTTCAAGTGTTCAGTGGAA+GGG + chr1_2:2938348-2938367 None:intergenic 40.0%
! ACTTTCAAGTGTTCAGTGGA+AGG + chr1_2:2938349-2938368 None:intergenic 40.0%
! TGAGACTTTCAAGTGTTCAG+TGG + chr1_2:2938353-2938372 None:intergenic 40.0%
AGGGTGGTGATAGTAAGTGT+CGG + chr1_2:2932671-2932690 None:intergenic 45.0%
! TTGTTGGTGAGAACAGAGAG+AGG + chr1_2:2932712-2932731 None:intergenic 45.0%
! CAACAGAGAGAGTGTGTGTT+TGG + chr1_2:2932817-2932836 None:intergenic 45.0%
GTATCTTCTGCGGTTCTACT+TGG - chr1_2:2933194-2933213 Msa0049580:CDS 45.0%
ATTGCACAAGAAGCAGTTGC+AGG - chr1_2:2934046-2934065 Msa0049580:intron 45.0%
AAGGTCTGGATGAAGCTTTG+CGG - chr1_2:2934246-2934265 Msa0049580:intron 45.0%
GAAAGAGTAGCCCATTTGGA+TGG - chr1_2:2934287-2934306 Msa0049580:intron 45.0%
CTTCAGAGCTCCATCCAAAT+GGG + chr1_2:2934300-2934319 None:intergenic 45.0%
TTCGAGAAGAACAAGGGCAA+AGG - chr1_2:2934345-2934364 Msa0049580:CDS 45.0%
TGCTGTGATGAAGGCTTCAA+AGG - chr1_2:2934376-2934395 Msa0049580:CDS 45.0%
! AAAAGAGTGCATGGTTTGGG+AGG - chr1_2:2934406-2934425 Msa0049580:intron 45.0%
TGAGGTCCGAGTACTTGAAA+AGG - chr1_2:2934619-2934638 Msa0049580:CDS 45.0%
CCGAGTACTTGAAAAGGAGT+TGG - chr1_2:2934625-2934644 Msa0049580:CDS 45.0%
AAGAGAGAGAATTTGGCCGT+CGG - chr1_2:2934660-2934679 Msa0049580:CDS 45.0%
!! TTCATTTTTGCCAGGGAACC+AGG + chr1_2:2934794-2934813 None:intergenic 45.0%
TCTTCACTTGACAGTTCTCC+TGG - chr1_2:2934893-2934912 Msa0049580:CDS 45.0%
CTTCACTTGACAGTTCTCCT+GGG - chr1_2:2934894-2934913 Msa0049580:CDS 45.0%
ATTCTTCTATTGGGAGTCCC+AGG + chr1_2:2934914-2934933 None:intergenic 45.0%
ATGCCAAAGAGAACTCGCAA+AGG + chr1_2:2935132-2935151 None:intergenic 45.0%
TGAAATCAATGCAGAAGCCG+AGG + chr1_2:2935200-2935219 None:intergenic 45.0%
GACTACCCCTGATCACATTT+CGG - chr1_2:2935423-2935442 Msa0049580:CDS 45.0%
GATGTCCGAAATGTGATCAG+GGG + chr1_2:2935431-2935450 None:intergenic 45.0%
GAGATGTCCGAAATGTGATC+AGG + chr1_2:2935433-2935452 None:intergenic 45.0%
! TAACATTCCCAGTTGGCTTC+AGG - chr1_2:2935495-2935514 Msa0049580:CDS 45.0%
ACTACATCCTGAAGCCAACT+GGG + chr1_2:2935505-2935524 None:intergenic 45.0%
TACTACATCCTGAAGCCAAC+TGG + chr1_2:2935506-2935525 None:intergenic 45.0%
!!! GAGTGACATGGTTTTGTTCC+AGG + chr1_2:2935537-2935556 None:intergenic 45.0%
AATCTAGATCCGTGCGTCTT+TGG - chr1_2:2935613-2935632 Msa0049580:CDS 45.0%
! TTTGGTTCCGTCAAAGTCTC+TGG - chr1_2:2935631-2935650 Msa0049580:CDS 45.0%
GAATTATCACAATCCACGGC+AGG + chr1_2:2935823-2935842 None:intergenic 45.0%
! ACATGGTCCGTGTTTTCCAA+TGG - chr1_2:2935908-2935927 Msa0049580:CDS 45.0%
!! GGGATGATAGGTCATTTTGC+AGG - chr1_2:2936153-2936172 Msa0049580:CDS 45.0%
GGCTTCAATCAGCTACTGAT+AGG - chr1_2:2936355-2936374 Msa0049580:CDS 45.0%
GAGTTGCAATTCCAGACATC+TGG + chr1_2:2936622-2936641 None:intergenic 45.0%
! TTCGCAATGGCTTGTCTTTC+TGG + chr1_2:2936790-2936809 None:intergenic 45.0%
GAAGGAACCAAATCATGGTG+CGG + chr1_2:2937065-2937084 None:intergenic 45.0%
!! CACCATGATTTGGTTCCTTC+TGG - chr1_2:2937065-2937084 Msa0049580:intron 45.0%
GGTTCCTTCTGGTAGATGAT+TGG - chr1_2:2937076-2937095 Msa0049580:intron 45.0%
! GAAATAGTCTTGGCGCAAGT+TGG - chr1_2:2937311-2937330 Msa0049580:intron 45.0%
CAGTGAGAGTCATATTACCG+TGG + chr1_2:2937340-2937359 None:intergenic 45.0%
GTCTACATAGAAGCTCCTAG+AGG - chr1_2:2937363-2937382 Msa0049580:intron 45.0%
GAAATCGAAGCCCCTAATTC+AGG - chr1_2:2937643-2937662 Msa0049580:CDS 45.0%
CTGTTATCTCCAAGTCCTGT+AGG + chr1_2:2937836-2937855 None:intergenic 45.0%
AACAGCCGCTTCAGAAAAGT+TGG - chr1_2:2937851-2937870 Msa0049580:intron 45.0%
!! CTCTGCCAACTTTTCTGAAG+CGG + chr1_2:2937859-2937878 None:intergenic 45.0%
CTGCTTCCCAAGATTAAGGA+TGG + chr1_2:2937892-2937911 None:intergenic 45.0%
TCAGCTGCTTCCCAAGATTA+AGG + chr1_2:2937896-2937915 None:intergenic 45.0%
TTAATCTTGGGAAGCAGCTG+AGG - chr1_2:2937895-2937914 Msa0049580:intron 45.0%
AAAAGGGATGCATCCTTTGG+TGG + chr1_2:2937930-2937949 None:intergenic 45.0%
TCATAACTTTCAGGGGAGCA+GGG + chr1_2:2938031-2938050 None:intergenic 45.0%
TTCATAACTTTCAGGGGAGC+AGG + chr1_2:2938032-2938051 None:intergenic 45.0%
TCCAGGCATTATACAACCTC+TGG - chr1_2:2938148-2938167 Msa0049580:intron 45.0%
TCCAGAGGTTGTATAATGCC+TGG + chr1_2:2938152-2938171 None:intergenic 45.0%
!! GGTGATAGTAAGTGTCGGCT+TGG + chr1_2:2932666-2932685 None:intergenic 50.0%
TGACGGAGTGAGTGTGTTGT+TGG + chr1_2:2932728-2932747 None:intergenic 50.0%
TGTGAACCGGGTATCTTCTG+CGG - chr1_2:2933184-2933203 Msa0049580:CDS 50.0%
GTAGAACCGCAGAAGATACC+CGG + chr1_2:2933193-2933212 None:intergenic 50.0%
TGGATCAAAAACCGTGGCCT+TGG - chr1_2:2933449-2933468 Msa0049580:intron 50.0%
! ATCAAAAACCGTGGCCTTGG+AGG - chr1_2:2933452-2933471 Msa0049580:intron 50.0%
!! GACTTTTTCCTCCAAGGCCA+CGG + chr1_2:2933463-2933482 None:intergenic 50.0%
AGGTCTGGATGAAGCTTTGC+GGG - chr1_2:2934247-2934266 Msa0049580:intron 50.0%
CCTTCAGAGCTCCATCCAAA+TGG + chr1_2:2934301-2934320 None:intergenic 50.0%
! CCATTTGGATGGAGCTCTGA+AGG - chr1_2:2934298-2934317 Msa0049580:intron 50.0%
GAGAAACATCAGCTGTCCGA+CGG + chr1_2:2934679-2934698 None:intergenic 50.0%
ATGTCAGAGATTGCGCCTTC+TGG - chr1_2:2934748-2934767 Msa0049580:CDS 50.0%
! AGAGATTGCGCCTTCTGGTT+CGG - chr1_2:2934753-2934772 Msa0049580:CDS 50.0%
GTAACCGTTTCCGAACCAGA+AGG + chr1_2:2934766-2934785 None:intergenic 50.0%
! GATTCGGAGCACTTCAGAAG+TGG - chr1_2:2935220-2935239 Msa0049580:CDS 50.0%
! TCATGGTCCTGCAGAAGCAT+TGG - chr1_2:2935256-2935275 Msa0049580:CDS 50.0%
TGAAGCTCCAATGCTTCTGC+AGG + chr1_2:2935266-2935285 None:intergenic 50.0%
TTGACGGAACCAAAGACGCA+CGG + chr1_2:2935625-2935644 None:intergenic 50.0%
!! GTCTTCGTGAGCTTGCTGTT+TGG + chr1_2:2935749-2935768 None:intergenic 50.0%
AAGAATCAACTTGCCTGCCG+TGG - chr1_2:2935807-2935826 Msa0049580:CDS 50.0%
TGAGACACGAAGCGAAAGTG+AGG - chr1_2:2936122-2936141 Msa0049580:CDS 50.0%
AGCGAAAGTGAGGCAGAGTT+TGG - chr1_2:2936132-2936151 Msa0049580:CDS 50.0%
GCGAAAGTGAGGCAGAGTTT+GGG - chr1_2:2936133-2936152 Msa0049580:CDS 50.0%
! GAGGCAGAGTTTGGGATGAT+AGG - chr1_2:2936141-2936160 Msa0049580:CDS 50.0%
TGATGCACAGCATAAAGGGG+CGG - chr1_2:2936515-2936534 Msa0049580:CDS 50.0%
GGGGCGGAATTAAAAGAGGT+CGG - chr1_2:2936531-2936550 Msa0049580:CDS 50.0%
! AGAGGTCGGTCTCAAGGTTT+TGG - chr1_2:2936545-2936564 Msa0049580:CDS 50.0%
TGTTCTCAGCATGCCAAAGG+AGG - chr1_2:2936745-2936764 Msa0049580:CDS 50.0%
GTTCTCAGCATGCCAAAGGA+GGG - chr1_2:2936746-2936765 Msa0049580:CDS 50.0%
TCATGGTTTGAGCCCTCCTT+TGG + chr1_2:2936761-2936780 None:intergenic 50.0%
ATACCTACAGGCTACTGCCT+TGG - chr1_2:2937107-2937126 Msa0049580:CDS 50.0%
!! TTGGCGCAAGTTGGTTTCCA+CGG - chr1_2:2937320-2937339 Msa0049580:intron 50.0%
!! GTGGTGGATGTGGTACTGAT+AGG + chr1_2:2937975-2937994 None:intergenic 50.0%
!! TGTTGTTGTGATGGTGGTGG+TGG + chr1_2:2937994-2938013 None:intergenic 50.0%
GGAGTCACGGTCACTTACTT+TGG + chr1_2:2938114-2938133 None:intergenic 50.0%
CCTACTAAGAAACCGGGAAG+CGG - chr1_2:2938266-2938285 Msa0049580:five_prime_UTR 50.0%
TTCCACAAACTTCCGCTTCC+CGG + chr1_2:2938281-2938300 None:intergenic 50.0%
!! GAAGTGTTGTCGGCGAAGCA+AGG - chr1_2:2934227-2934246 Msa0049580:intron 55.0%
TGAAGCTTTGCGGGACCGAT+TGG - chr1_2:2934256-2934275 Msa0049580:intron 55.0%
!! TGCGCCTTCTGGTTCGGAAA+CGG - chr1_2:2934759-2934778 Msa0049580:CDS 55.0%
!! CTGGTTCGGAAACGGTTACC+AGG - chr1_2:2934767-2934786 Msa0049580:CDS 55.0%
!! GGTTAGCTGTGCTGACTCCT+CGG - chr1_2:2935180-2935199 Msa0049580:CDS 55.0%
!! AGGAATGCCAACGGGCTACA+TGG - chr1_2:2935891-2935910 Msa0049580:CDS 55.0%
GAACCAAGGCAGTAGCCTGT+AGG + chr1_2:2937113-2937132 None:intergenic 55.0%
TGGGAAGCAGCTGAGGTCAT+TGG - chr1_2:2937902-2937921 Msa0049580:intron 55.0%
!! GAGGTCATTGGCTCCACCAA+AGG - chr1_2:2937914-2937933 Msa0049580:intron 55.0%
!! TGTTGTGATGGTGGTGGTGG+TGG + chr1_2:2937991-2938010 None:intergenic 55.0%
ACTTTCAGGGGAGCAGGGAT+AGG + chr1_2:2938026-2938045 None:intergenic 55.0%
! TGGTGGTGAGATCGGAGTCA+CGG + chr1_2:2938127-2938146 None:intergenic 55.0%
TCCGATCTCACCACCATTCC+AGG - chr1_2:2938131-2938150 Msa0049580:intron 55.0%
! GCCTGGAATGGTGGTGAGAT+CGG + chr1_2:2938135-2938154 None:intergenic 55.0%
CCGCTTCCCGGTTTCTTAGT+AGG + chr1_2:2938269-2938288 None:intergenic 55.0%
AACCGGGAAGCGGAAGTTTG+TGG - chr1_2:2938276-2938295 Msa0049580:five_prime_UTR 55.0%
GTTGTCGGCGAAGCAAGGTC+TGG - chr1_2:2934232-2934251 Msa0049580:intron 60.0%
CGGAAACGGTTACCAGGTCC+TGG - chr1_2:2934773-2934792 Msa0049580:CDS 60.0%
GTTACCAGGTCCTGGTTCCC+TGG - chr1_2:2934781-2934800 Msa0049580:CDS 60.0%
TTTGCCAGGGAACCAGGACC+TGG + chr1_2:2934788-2934807 None:intergenic 60.0%
ACACGGACCATGTAGCCCGT+TGG + chr1_2:2935901-2935920 None:intergenic 60.0%
!! GATGGTGGTGGTGGTGGATG+TGG + chr1_2:2937985-2938004 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 2932637 2938519 2932637 ID=Msa0049580;Name=Msa0049580
chr1_2 mRNA 2932637 2938519 2932637 ID=Msa0049580-mRNA-1;Parent=Msa0049580;Name=Msa0049580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=379|1|1|1|0.8|0.66|6|155|1089
chr1_2 exon 2932637 2933316 2932637 ID=Msa0049580-mRNA-1:exon:645;Parent=Msa0049580-mRNA-1
chr1_2 exon 2934345 2934402 2934345 ID=Msa0049580-mRNA-1:exon:644;Parent=Msa0049580-mRNA-1
chr1_2 exon 2934504 2936949 2934504 ID=Msa0049580-mRNA-1:exon:643;Parent=Msa0049580-mRNA-1
chr1_2 exon 2937089 2937233 2937089 ID=Msa0049580-mRNA-1:exon:642;Parent=Msa0049580-mRNA-1
chr1_2 exon 2937613 2937727 2937613 ID=Msa0049580-mRNA-1:exon:641;Parent=Msa0049580-mRNA-1
chr1_2 exon 2938160 2938519 2938160 ID=Msa0049580-mRNA-1:exon:640;Parent=Msa0049580-mRNA-1
chr1_2 five_prime_UTR 2938160 2938519 2938160 ID=Msa0049580-mRNA-1:five_prime_utr;Parent=Msa0049580-mRNA-1
chr1_2 five_prime_UTR 2937709 2937727 2937709 ID=Msa0049580-mRNA-1:five_prime_utr;Parent=Msa0049580-mRNA-1
chr1_2 CDS 2937613 2937708 2937613 ID=Msa0049580-mRNA-1:cds;Parent=Msa0049580-mRNA-1
chr1_2 CDS 2937089 2937233 2937089 ID=Msa0049580-mRNA-1:cds;Parent=Msa0049580-mRNA-1
chr1_2 CDS 2934504 2936949 2934504 ID=Msa0049580-mRNA-1:cds;Parent=Msa0049580-mRNA-1
chr1_2 CDS 2934345 2934402 2934345 ID=Msa0049580-mRNA-1:cds;Parent=Msa0049580-mRNA-1
chr1_2 CDS 2932792 2933316 2932792 ID=Msa0049580-mRNA-1:cds;Parent=Msa0049580-mRNA-1
chr1_2 three_prime_UTR 2932637 2932791 2932637 ID=Msa0049580-mRNA-1:three_prime_utr;Parent=Msa0049580-mRNA-1
Gene Sequence

>Msa0049580

ATGGATCAAAAACCGTGGCCTTGGAGGAAAAAGTCATCAGAAAAGACAATAGTAACTGCTGAAAACGGCAATCTCACTTCAAAAGAAAATGGAGAGGTACACGCACTTCTTGCTGATAAAGAAGAATTGGAGAAAGACTTCAAAGAATTAGAAAATAAGCTTGCTTCGGCGCTTTCTGAGTGTAATTCTAAAGATGAGCTGGTAAAGAAACAAACTAAAATTGCACAAGAAGCAGTTGCAGGCTTGGAAAAAGCAAAAGTTGAAGTGTTGTCGGCGAAGCAAGGTCTGGATGAAGCTTTGCGGGACCGATTGGTTTATGAAGAAAGAGTAGCCCATTTGGATGGAGCTCTGAAGGAATGTATGCAGCAGTTACGATTTGTTCGAGAAGAACAAGGGCAAAGGATTCATGATGCTGTGATGAAGGCTTCAAAGGAATTTGAAAAAGAGTGCATGGTTTGGGAGGATCAGTTATCAGTGACAAGTAAAAGGCTGGCAAAAGTTGAGACTGAAAATTCTCATCTTAATACATCTATTTTTCAAAGAGAAAAATTGATTGAGGATCTGAAAAAACAATTGACTCAAGCTGAGGCAGATCATAGTGCATTGATGATTAGATTAGAGTCCATTGAGAAAGATAATGCTTCTCTGACATATGAGGTCCGAGTACTTGAAAAGGAGTTGGAGATCCGAAATGAAGAGAGAGAATTTGGCCGTCGGACAGCTGATGTTTCTCACAAACATCACTTAGAGAATGTTAAAAAAATTGCCAAGTTAGAATCAGAATGTCAGAGATTGCGCCTTCTGGTTCGGAAACGGTTACCAGGTCCTGGTTCCCTGGCAAAAATGAAAAATGAAGTTGAAATGTTAGGACGAGATTCCCTTGAAATAAGAAGGAACAAGTTAAACTCAACTAGTTCAATGGTTGAATCTTCACTTGACAGTTCTCCTGGGACTCCCAATAGAAGAATCGATACTTTGACAGAGCAGCTGTATGCCGTCGAAGAAGAAAACAAAGCCTTAAAAGATTCCCTAAGTAGGAAAATGAATGAGCTCCAATTCTCAAGAGTAATGCTTTCTCGCACAGCTTCAAAACTTTTGCAACTCGAGTCGCATAATGAAGAATCATCTAAAGGTCAAGTTGCTGTGGAGCAGCTTAGAAGTAACCTTTGCGAGTTCTCTTTGGCATCAATGTCTGATATTGGCAGTGATGACAAGGTTAGCTGTGCTGACTCCTCGGCTTCTGCATTGATTTCAGATTCGGAGCACTTCAGAAGTGGAAAACAAAAGGAATCATGGTCCTGCAGAAGCATTGGAGCTTCAGACATAAATCTCATGGATGACTTTGTTGAAATGGAAAAATTAGCAGTGGTCTCTGTTGAGAAAGACACTGAAATCTCTGGTGCTTCTTTGAAAGAAGTTGATGAGATCAATGGCTTCTCAGAAACTAGGAAAAATGAGACTACCCCTGATCACATTTCGGACATCTCAACATCAAATAAAAAAGTATCTTCCCTTGATGAACTAAAGGATAACATTCCCAGTTGGCTTCAGGATGTAGTAAAAAGGATCCTGGAACAAAACCATGTCACTCACAAAAATCCTGATGATATACTCGAGAATATTAGAGTAGCTTTGAGGAATCTGAATAATCTAGATCCGTGCGTCTTTGGTTCCGTCAAAGTCTCTGGTCATATTGAAGGATCTGATCCTTCAAATAACTCTTTGGTGGTAGTTCCATCCAGTGATGTAAATATTACTGACCTCTCACCAATAAAGAGAACCAAACAGCAAGCTCACGAAGACCTGAGTAAGTCAATAGGAAAGATAATTGAGCTTATTGAAAGAATCAACTTGCCTGCCGTGGATTGTGATAATTCAGATCCCTTATGCACAAGTGATGAGACTGTACCCTCAGTAAATAATTCAGGAATGCCAACGGGCTACATGGTCCGTGTTTTCCAATGGAAAACATCTGAACTCAGCAACGTTTTGCAGAAATTTCTACATGTGTGTTATGATTTACTGAATGGCAAGGTTGATCATGAAAAATTTGCTGAAGAACTAACAACAGCTTTGGATTGGATAATGAATCACTGTTTTTCACTTCAGGATGTTTCTTGTATGAAGGATGCCATCAAGAAACAATTTGATTGGGATGAGACACGAAGCGAAAGTGAGGCAGAGTTTGGGATGATAGGTCATTTTGCAGGGGAAGATAAGTTGCATCATCCCGCAGAACAGTTTCCATGTTTTCCTCAAGTAACTACTTCAAATGGTCATGATTTTCAGAGTCAGAGTCGAGAGATGTATTCTGATGAGGAAGAAGAAATTAAAAATATTAAAGGAAAATTGATCAATGCTGAATCTCAAAAGGAAACATTGGAAGGGCGGCTTCAATCAGCTACTGATAGGATTGAGTCCTTAACGGATCAACTTTTGGAATCAGAGAAAACTATTGACAGCTCAAGACTAGAGTTACAATCCTTAAAAGAATCTTATGGAATACTTGAGGATCAAATAAAAAATCACACAGTTATGAAATCAGATCTTGATGCACAGCATAAAGGGGCGGAATTAAAAGAGGTCGGTCTCAAGGTTTTGGAATTAGAAGTGGAACTAGAGAACAAGAACCACAGTTGTGAAGAATTAGAGACCAGATGTCTGGAATTGCAACTCCAGCTTGAAAGCATGCCAAAGGAGGGCTCAAACCATGATATTAACCAGAAAGACAAGCCATTGCGAACTGACTTGGAGATAACAGCCGCTTCAGAAAAGTTGGCAGAGTGTCAAGAAACCATCCTTAATCTTGGGAAGCAGCTGAGGTCATTGGCTCCACCAAAGGATGCATCCCTTTTTGACAATGTTATTGCAGCACAGCCTATCAGTACCACATCCACCACCACCACCATCACAACAACAAAAACGAATCCTATCCCTGCTCCCCTGAAAGTTATGAAAAAGAATCGATCTTTACTCGATCAGATGCTATCTGAAGATGATACTAAATCCAAGGTTTCCAAAGTAAGTGACCGTGACTCCGATCTCACCACCATTCCAGGCATTATACAACCTCTGGAGAAGATTTTATCTTTGAATGAATTTAAAGCTCCAGATGACAGTGTTACTGCTAATGATTTGGCCATTGTAACTACTAAGAAACCGGCCATTGTACCTACTAAGAAACCGGGAAGCGGAAGTTTGTGGAAGAAGTTATTATGGAAAAAGAAGAAAAGTACCAACATGAAAACATCCCTTCCACTGAACACTTGA
Protein sequence

>Msa0049580

MDQKPWPWRKKSSEKTIVTAENGNLTSKENGEVHALLADKEELEKDFKELENKLASALSECNSKDELVKKQTKIAQEAVAGLEKAKVEVLSAKQGLDEALRDRLVYEERVAHLDGALKECMQQLRFVREEQGQRIHDAVMKASKEFEKECMVWEDQLSVTSKRLAKVETENSHLNTSIFQREKLIEDLKKQLTQAEADHSALMIRLESIEKDNASLTYEVRVLEKELEIRNEEREFGRRTADVSHKHHLENVKKIAKLESECQRLRLLVRKRLPGPGSLAKMKNEVEMLGRDSLEIRRNKLNSTSSMVESSLDSSPGTPNRRIDTLTEQLYAVEEENKALKDSLSRKMNELQFSRVMLSRTASKLLQLESHNEESSKGQVAVEQLRSNLCEFSLASMSDIGSDDKVSCADSSASALISDSEHFRSGKQKESWSCRSIGASDINLMDDFVEMEKLAVVSVEKDTEISGASLKEVDEINGFSETRKNETTPDHISDISTSNKKVSSLDELKDNIPSWLQDVVKRILEQNHVTHKNPDDILENIRVALRNLNNLDPCVFGSVKVSGHIEGSDPSNNSLVVVPSSDVNITDLSPIKRTKQQAHEDLSKSIGKIIELIERINLPAVDCDNSDPLCTSDETVPSVNNSGMPTGYMVRVFQWKTSELSNVLQKFLHVCYDLLNGKVDHEKFAEELTTALDWIMNHCFSLQDVSCMKDAIKKQFDWDETRSESEAEFGMIGHFAGEDKLHHPAEQFPCFPQVTTSNGHDFQSQSREMYSDEEEEIKNIKGKLINAESQKETLEGRLQSATDRIESLTDQLLESEKTIDSSRLELQSLKESYGILEDQIKNHTVMKSDLDAQHKGAELKEVGLKVLELEVELENKNHSCEELETRCLELQLQLESMPKEGSNHDINQKDKPLRTDLEITAASEKLAECQETILNLGKQLRSLAPPKDASLFDNVIAAQPISTTSTTTTITTTKTNPIPAPLKVMKKNRSLLDQMLSEDDTKSKVSKVSDRDSDLTTIPGIIQPLEKILSLNEFKAPDDSVTANDLAIVTTKKPAIVPTKKPGSGSLWKKLLWKKKKSTNMKTSLPLNT*