Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055700 | KEH39811.1 | 74.020 | 204 | 40 | 5 | 1 | 191 | 1 | 204 | 1.13e-89 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055700 | sp|Q9LMP1|WAK2_ARATH | 27.397 | 219 | 125 | 12 | 4 | 198 | 1 | 209 | 1.69e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055700 | A0A072VDZ8 | 74.020 | 204 | 40 | 5 | 1 | 191 | 1 | 204 | 5.38e-90 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055700 | Msa0055730 | 0.816909 | 4.337006e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055700 | MtrunA17_Chr1g0148511 | 74.020 | 204 | 40 | 5 | 1 | 191 | 1 | 204 | 2.04e-93 | 293 |
| Msa0055700 | MtrunA17_Chr1g0148481 | 62.109 | 256 | 70 | 11 | 15 | 249 | 1 | 250 | 5.62e-90 | 269 |
| Msa0055700 | MtrunA17_Chr1g0158221 | 43.750 | 208 | 101 | 6 | 2 | 193 | 6 | 213 | 2.52e-46 | 159 |
| Msa0055700 | MtrunA17_Chr1g0148491 | 68.852 | 122 | 34 | 3 | 74 | 191 | 7 | 128 | 3.49e-43 | 157 |
| Msa0055700 | MtrunA17_Chr1g0158261 | 45.729 | 199 | 91 | 8 | 9 | 191 | 15 | 212 | 4.11e-41 | 152 |
| Msa0055700 | MtrunA17_Chr1g0158201 | 44.724 | 199 | 92 | 6 | 11 | 191 | 13 | 211 | 2.12e-39 | 147 |
| Msa0055700 | MtrunA17_Chr1g0158161 | 42.000 | 200 | 96 | 7 | 11 | 191 | 3 | 201 | 1.36e-37 | 135 |
| Msa0055700 | MtrunA17_Chr1g0148501 | 37.445 | 227 | 104 | 11 | 1 | 191 | 1 | 225 | 1.99e-31 | 124 |
| Msa0055700 | MtrunA17_Chr1g0158241 | 39.024 | 205 | 102 | 9 | 11 | 193 | 13 | 216 | 1.54e-30 | 117 |
| Msa0055700 | MtrunA17_Chr1g0158251 | 36.500 | 200 | 107 | 8 | 11 | 191 | 18 | 216 | 1.84e-28 | 115 |
| Msa0055700 | MtrunA17_Chr1g0148461 | 34.247 | 219 | 113 | 7 | 4 | 191 | 20 | 238 | 1.99e-28 | 115 |
| Msa0055700 | MtrunA17_Chr3g0125471 | 24.201 | 219 | 138 | 8 | 1 | 191 | 1 | 219 | 3.97e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTACTCGCGTATATTT+TGG | 0.200572 | 1_2:+10844130 | None:intergenic |
| TATGACCAGGACATGGATTT+TGG | 0.218434 | 1_2:-10843582 | Msa0055700:CDS |
| GTTCTTGCATCCATTATTAT+TGG | 0.249192 | 1_2:+10843617 | None:intergenic |
| ATCTGATGAAGTGTCGTTTA+TGG | 0.275959 | 1_2:+10844202 | None:intergenic |
| ATCAGATTCAGATTGTTTCT+TGG | 0.318948 | 1_2:-10844186 | Msa0055700:CDS |
| TCAGATTCAGATTGTTTCTT+GGG | 0.331904 | 1_2:-10844185 | Msa0055700:CDS |
| TCGTTTATGGCAAATGGATA+TGG | 0.337219 | 1_2:+10844215 | None:intergenic |
| GAGGAGGCAATGGAGGTGTT+TGG | 0.346771 | 1_2:-10839828 | Msa0055700:CDS |
| GATCAAAGATCGATTGATAA+TGG | 0.365125 | 1_2:-10843882 | Msa0055700:CDS |
| ACAGCTTCTTCCAATAATAA+TGG | 0.365234 | 1_2:-10843627 | Msa0055700:CDS |
| GGTGAAAACAAGTATTCAAC+TGG | 0.380830 | 1_2:-10843927 | Msa0055700:CDS |
| ACACCGGGGATGGTGGTGAC+AGG | 0.383651 | 1_2:-10839878 | Msa0055700:CDS |
| TGGATTGAGTGGTGATTTAG+AGG | 0.389249 | 1_2:-10839808 | Msa0055700:CDS |
| ATTGATAATGGAAAATGTTC+GGG | 0.393364 | 1_2:-10843870 | Msa0055700:intron |
| GGGTGCTTAACAAGATCTTT+TGG | 0.402300 | 1_2:-10843906 | Msa0055700:CDS |
| GATTGATAATGGAAAATGTT+CGG | 0.404592 | 1_2:-10843871 | Msa0055700:CDS |
| TACCAATGCAGATGCAATAC+AGG | 0.407639 | 1_2:-10843558 | Msa0055700:intron |
| AAATGCATAGCTGCAAAATT+CGG | 0.410763 | 1_2:+10843767 | None:intergenic |
| GGATTGAGTGGTGATTTAGA+GGG | 0.431915 | 1_2:-10839807 | Msa0055700:CDS |
| GAAAACAAATTTGTAACTGT+TGG | 0.432923 | 1_2:-10843984 | Msa0055700:CDS |
| TATGCATTTGTTGTTAAGAA+TGG | 0.433815 | 1_2:-10843753 | Msa0055700:intron |
| ACCGGGGATGGTGGTGACAG+GGG | 0.435629 | 1_2:-10839876 | Msa0055700:CDS |
| GGCAGCGTCGGCGGTGGTGA+TGG | 0.436515 | 1_2:-10839930 | Msa0055700:CDS |
| GTTATTGTTGTGGTGACACC+GGG | 0.454545 | 1_2:-10839893 | Msa0055700:CDS |
| GGCGATGGCAGCGTCGGCGG+TGG | 0.460955 | 1_2:-10839936 | Msa0055700:CDS |
| TGTCTGTGTTGCGCGATGGT+TGG | 0.463121 | 1_2:-10839850 | Msa0055700:CDS |
| AACAAGACCATCGCAATACT+TGG | 0.464496 | 1_2:+10844052 | None:intergenic |
| GTGAGTGTCGGTGGCGGCGA+TGG | 0.464583 | 1_2:-10839951 | Msa0055700:CDS |
| CCGGGGATGGTGGTGACAGG+GGG | 0.467279 | 1_2:-10839875 | Msa0055700:CDS |
| ACCACAGGTAATTCCTTGTC+AGG | 0.472691 | 1_2:+10843690 | None:intergenic |
| CACCGGGGATGGTGGTGACA+GGG | 0.485425 | 1_2:-10839877 | Msa0055700:CDS |
| GTGGTTCTCGACTGGACCAT+TGG | 0.489854 | 1_2:-10843672 | Msa0055700:CDS |
| GGCGGCGATGGCAGCGTCGG+CGG | 0.494608 | 1_2:-10839939 | Msa0055700:CDS |
| GTTAGCCATGGTGGTTGTAC+TGG | 0.497804 | 1_2:-10844303 | Msa0055700:CDS |
| GAAGTGTCGTTTATGGCAAA+TGG | 0.503647 | 1_2:+10844209 | None:intergenic |
| CGATGGTCTTGTTAATAAGC+CGG | 0.506516 | 1_2:-10844042 | Msa0055700:CDS |
| AATTACCTGTGGTTCTCGAC+TGG | 0.524346 | 1_2:-10843680 | Msa0055700:CDS |
| CTGTGTTGCGCGATGGTTGG+AGG | 0.524997 | 1_2:-10839847 | Msa0055700:CDS |
| GATTGAGTGGTGATTTAGAG+GGG | 0.528739 | 1_2:-10839806 | Msa0055700:CDS |
| ACTGTTGGTTCTAACAGTTA+CGG | 0.532378 | 1_2:-10843969 | Msa0055700:CDS |
| GGTTATTGTTGTGGTGACAC+CGG | 0.538509 | 1_2:-10839894 | Msa0055700:CDS |
| GGTGGCGGCGATGGCAGCGT+CGG | 0.539880 | 1_2:-10839942 | Msa0055700:CDS |
| AACCTGTATTGCATCTGCAT+TGG | 0.544169 | 1_2:+10843556 | None:intergenic |
| TGTTGTGGTGACACCGGGGA+TGG | 0.545073 | 1_2:-10839888 | Msa0055700:CDS |
| GATTCAGATTGTTTCTTGGG+TGG | 0.546865 | 1_2:-10844182 | Msa0055700:CDS |
| ATGGAGGTGTTTGGATTGAG+TGG | 0.552225 | 1_2:-10839819 | Msa0055700:CDS |
| TTGGATTCATTGCAAATGAG+TGG | 0.553095 | 1_2:+10844149 | None:intergenic |
| ATTGAGTGGTGATTTAGAGG+GGG | 0.556487 | 1_2:-10839805 | Msa0055700:CDS |
| ATGGTCCAGTCGAGAACCAC+AGG | 0.557352 | 1_2:+10843675 | None:intergenic |
| GGTAACCAAAATCCATGTCC+TGG | 0.563470 | 1_2:+10843577 | None:intergenic |
| TTGATATTCCTCCTAAAATG+TGG | 0.565425 | 1_2:-10843830 | Msa0055700:CDS |
| TTGAGTGGTGATTTAGAGGG+GGG | 0.570952 | 1_2:-10839804 | Msa0055700:CDS |
| ACCTCCACAAGTGTGACTGC+AGG | 0.571436 | 1_2:+10844247 | None:intergenic |
| GCTTTCATTAATGTCGCCAA+TGG | 0.574412 | 1_2:+10843656 | None:intergenic |
| GGTGGTGATGGCAGTAGAGA+TGG | 0.576262 | 1_2:-10839918 | Msa0055700:CDS |
| CAATAGTCATTGTTATGACC+AGG | 0.576779 | 1_2:-10843595 | Msa0055700:CDS |
| GGTTTGTCTGTGTTGCGCGA+TGG | 0.577597 | 1_2:-10839854 | Msa0055700:CDS |
| GCGATGGTTGGAGGAGGCAA+TGG | 0.580334 | 1_2:-10839838 | Msa0055700:CDS |
| AGAGATGGAGGTTATTGTTG+TGG | 0.580736 | 1_2:-10839903 | Msa0055700:CDS |
| TATGAACCACTGTTAAGCTC+CGG | 0.582448 | 1_2:+10844023 | None:intergenic |
| TATGTCTCCAAGTATTGCGA+TGG | 0.588358 | 1_2:-10844059 | Msa0055700:CDS |
| AATACCTGCAGTCACACTTG+TGG | 0.594585 | 1_2:-10844251 | Msa0055700:CDS |
| ATGGTTGGAGGAGGCAATGG+AGG | 0.595754 | 1_2:-10839835 | Msa0055700:CDS |
| TCATTGTTATGACCAGGACA+TGG | 0.599074 | 1_2:-10843589 | Msa0055700:CDS |
| GCCATGGTGGTTGTACTGGT+AGG | 0.599156 | 1_2:-10844299 | Msa0055700:CDS |
| TCATCCACTCATTTATCACA+AGG | 0.603951 | 1_2:-10843717 | Msa0055700:CDS |
| TGTGGTGACACCGGGGATGG+TGG | 0.607434 | 1_2:-10839885 | Msa0055700:CDS |
| GTGAGAGTGAGTGTCGGTGG+CGG | 0.611703 | 1_2:-10839957 | Msa0055700:CDS |
| ATCACAAGGTGTACCTGACA+AGG | 0.617887 | 1_2:-10843703 | Msa0055700:CDS |
| GTGGTGAGAGTGAGTGTCGG+TGG | 0.621847 | 1_2:-10839960 | Msa0055700:CDS |
| TGTGTATGTGTTAGCCATGG+TGG | 0.626602 | 1_2:-10844312 | Msa0055700:CDS |
| ACCTGCAGTCACACTTGTGG+AGG | 0.627260 | 1_2:-10844248 | Msa0055700:CDS |
| TGTTGCGCGATGGTTGGAGG+AGG | 0.630444 | 1_2:-10839844 | Msa0055700:CDS |
| GGTGATGGCAGTAGAGATGG+AGG | 0.670392 | 1_2:-10839915 | Msa0055700:CDS |
| TACACCTTGTGATAAATGAG+TGG | 0.684130 | 1_2:+10843713 | None:intergenic |
| GCATGTGTATGTGTTAGCCA+TGG | 0.685246 | 1_2:-10844315 | Msa0055700:CDS |
| CAGGTGGTGAGAGTGAGTGT+CGG | 0.688706 | 1_2:-10839963 | Msa0055700:CDS |
| ACCTGACAAGGAATTACCTG+TGG | 0.696233 | 1_2:-10843691 | Msa0055700:CDS |
| AATAAGCCGGAGCTTAACAG+TGG | 0.698673 | 1_2:-10844029 | Msa0055700:CDS |
| GTGAAAACAAGTATTCAACT+GGG | 0.718506 | 1_2:-10843926 | Msa0055700:CDS |
| TCCTACCAGTACAACCACCA+TGG | 0.724765 | 1_2:+10844298 | None:intergenic |
| TTATTGTTGTGGTGACACCG+GGG | 0.809139 | 1_2:-10839892 | Msa0055700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAAATAAAATAT+TGG | + | chr1_2:10842608-10842627 | None:intergenic | 0.0% |
| !!! | AATTTTTCATTTTTTTAACA+GGG | + | chr1_2:10841109-10841128 | None:intergenic | 10.0% |
| !!! | AAATTTTTCATTTTTTTAAC+AGG | + | chr1_2:10841110-10841129 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAACCAATAAAA+AGG | - | chr1_2:10841272-10841291 | Msa0055700:intron | 10.0% |
| !!! | TCAATTAGTTTTTATTTTTA+AGG | - | chr1_2:10841374-10841393 | Msa0055700:intron | 10.0% |
| !!! | TTTTATTTTTAAGGAAAAAA+AGG | - | chr1_2:10841383-10841402 | Msa0055700:intron | 10.0% |
| !! | TAATGAAGTAATATATTTAT+TGG | + | chr1_2:10842339-10842358 | None:intergenic | 10.0% |
| !!! | TTTTAATTTGATATAAATCT+AGG | - | chr1_2:10842492-10842511 | Msa0055700:intron | 10.0% |
| !! | AATAAAACAACATTAAAAAA+TGG | + | chr1_2:10842533-10842552 | None:intergenic | 10.0% |
| !! | TTTAAGCAATTTAAAAAAAA+AGG | + | chr1_2:10842716-10842735 | None:intergenic | 10.0% |
| !!! | TATTTATTTAATTTTGTTGT+TGG | - | chr1_2:10843116-10843135 | Msa0055700:intron | 10.0% |
| !! | ATAAAATATTCTATATTCAT+AGG | + | chr1_2:10843310-10843329 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTATTCGAATTT+TGG | - | chr1_2:10840628-10840647 | Msa0055700:intron | 15.0% |
| !!! | TATTTTTTTAAACTTGGTAT+CGG | - | chr1_2:10840671-10840690 | Msa0055700:intron | 15.0% |
| !!! | ATTTTTCATTTTTTTAACAG+GGG | + | chr1_2:10841108-10841127 | None:intergenic | 15.0% |
| !! | TATTAAATGCTAAAACTTAA+GGG | + | chr1_2:10841136-10841155 | None:intergenic | 15.0% |
| !! | ATATTAAATGCTAAAACTTA+AGG | + | chr1_2:10841137-10841156 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAACAAACCAAT+TGG | + | chr1_2:10841300-10841319 | None:intergenic | 15.0% |
| !! | TGTAAGAGAATTAATAAAAT+TGG | + | chr1_2:10841758-10841777 | None:intergenic | 15.0% |
| !! | AAATGATGAAATTTATGATT+TGG | + | chr1_2:10841998-10842017 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTCCAAAAATTA+TGG | - | chr1_2:10842027-10842046 | Msa0055700:intron | 15.0% |
| !! | AATAGCATATAAATAAAGTA+AGG | - | chr1_2:10842093-10842112 | Msa0055700:intron | 15.0% |
| !!! | AAAATACCTTACTTTTTTTT+CGG | + | chr1_2:10842132-10842151 | None:intergenic | 15.0% |
| !!! | TATCTTTTTCTTTCTTTTAA+AGG | - | chr1_2:10842665-10842684 | Msa0055700:intron | 15.0% |
| !!! | AACTCTTTGAAAAAATTATA+CGG | + | chr1_2:10843354-10843373 | None:intergenic | 15.0% |
| !!! | TATTCGTTATACTTTTTTTT+TGG | - | chr1_2:10843397-10843416 | Msa0055700:intron | 15.0% |
| !!! | ATTCGTTATACTTTTTTTTT+GGG | - | chr1_2:10843398-10843417 | Msa0055700:intron | 15.0% |
| !! | ATGAAAAAAATCGATTAAAA+GGG | + | chr1_2:10843512-10843531 | None:intergenic | 15.0% |
| !! | TATGAAAAAAATCGATTAAA+AGG | + | chr1_2:10843513-10843532 | None:intergenic | 15.0% |
| !!! | ATACTTATATTCCACATTTT+AGG | + | chr1_2:10840307-10840326 | None:intergenic | 20.0% |
| !!! | CATACAAAGAGTTTTAAATA+GGG | + | chr1_2:10840756-10840775 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTAAGGTCTC+CGG | + | chr1_2:10840810-10840829 | None:intergenic | 20.0% |
| !!! | CTTGGAGTTTTTTTTTTTTA+AGG | + | chr1_2:10840817-10840836 | None:intergenic | 20.0% |
| !! | TATTGTACTATAAATCCATT+TGG | + | chr1_2:10840865-10840884 | None:intergenic | 20.0% |
| !! | ATCATTGAATTATTGAATCT+TGG | + | chr1_2:10840960-10840979 | None:intergenic | 20.0% |
| !! | AAGATTCAATAATTCAATGA+TGG | - | chr1_2:10840959-10840978 | Msa0055700:intron | 20.0% |
| !! | TCGCAACATTTATAAATTTA+GGG | + | chr1_2:10841078-10841097 | None:intergenic | 20.0% |
| !! | ATCGCAACATTTATAAATTT+AGG | + | chr1_2:10841079-10841098 | None:intergenic | 20.0% |
| !!! | ATTTATAAATGTTGCGATTT+TGG | - | chr1_2:10841081-10841100 | Msa0055700:intron | 20.0% |
| !!! | TTTATAAATGTTGCGATTTT+GGG | - | chr1_2:10841082-10841101 | Msa0055700:intron | 20.0% |
| !! | AAAAATATTGAGAATAAACG+TGG | + | chr1_2:10841241-10841260 | None:intergenic | 20.0% |
| !!! | GGTTTGTTTTTTTTTTTTTG+TGG | - | chr1_2:10841303-10841322 | Msa0055700:intron | 20.0% |
| !! | TAAAAACTAATTGAACGATA+CGG | + | chr1_2:10841368-10841387 | None:intergenic | 20.0% |
| !! | AAAAATGTTAGATGAAAAGA+AGG | + | chr1_2:10841713-10841732 | None:intergenic | 20.0% |
| !!! | ATCTAACATTTTTCTTTCTT+CGG | - | chr1_2:10841720-10841739 | Msa0055700:intron | 20.0% |
| !! | TGATAATCAAAATTGAATCA+AGG | + | chr1_2:10841970-10841989 | None:intergenic | 20.0% |
| !!! | AATTTTGTAGCCATAATTTT+TGG | + | chr1_2:10842040-10842059 | None:intergenic | 20.0% |
| !! | TATATGCTATTGAAATTGAT+TGG | + | chr1_2:10842084-10842103 | None:intergenic | 20.0% |
| !! | AAAAAAATTGAGAATAAACG+TGG | + | chr1_2:10842171-10842190 | None:intergenic | 20.0% |
| !! | TTAAAATTTGAATTGGCATA+TGG | + | chr1_2:10842767-10842786 | None:intergenic | 20.0% |
| !! | TGAGTAGTTAAAATTTGAAT+TGG | + | chr1_2:10842774-10842793 | None:intergenic | 20.0% |
| !! | TGAAAACGAATAATAGTATA+TGG | + | chr1_2:10842885-10842904 | None:intergenic | 20.0% |
| !! | ATTCTAATTATCCTAATCTT+GGG | + | chr1_2:10842954-10842973 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTTGCTTGAAA+TGG | + | chr1_2:10840128-10840147 | None:intergenic | 25.0% |
| ! | GAAAACAAATTTGTAACTGT+TGG | - | chr1_2:10840139-10840158 | Msa0055700:intron | 25.0% |
| !!! | GGTTATTTTAATAGTTACGA+TGG | - | chr1_2:10840175-10840194 | Msa0055700:intron | 25.0% |
| !!! | GATTGATAATGGAAAATGTT+CGG | - | chr1_2:10840252-10840271 | Msa0055700:intron | 25.0% |
| !!! | ATTGATAATGGAAAATGTTC+GGG | - | chr1_2:10840253-10840272 | Msa0055700:intron | 25.0% |
| !!! | TATGCATTTGTTGTTAAGAA+TGG | - | chr1_2:10840370-10840389 | Msa0055700:intron | 25.0% |
| !!! | CCATACAAAGAGTTTTAAAT+AGG | + | chr1_2:10840757-10840776 | None:intergenic | 25.0% |
| !! | CCTATTTAAAACTCTTTGTA+TGG | - | chr1_2:10840754-10840773 | Msa0055700:intron | 25.0% |
| !! | TCTTTACTAGGCTTTAATTA+AGG | - | chr1_2:10840899-10840918 | Msa0055700:intron | 25.0% |
| ! | GCAACATTTATAAATTTAGG+GGG | + | chr1_2:10841076-10841095 | None:intergenic | 25.0% |
| ! | CGCAACATTTATAAATTTAG+GGG | + | chr1_2:10841077-10841096 | None:intergenic | 25.0% |
| !! | TCTAACATTTTTCTTTCTTC+GGG | - | chr1_2:10841721-10841740 | Msa0055700:intron | 25.0% |
| ! | TAAAAAGTAGCATTACAAAG+TGG | + | chr1_2:10841826-10841845 | None:intergenic | 25.0% |
| ! | CACACTCTAAACATAAAATA+TGG | - | chr1_2:10842925-10842944 | Msa0055700:intron | 25.0% |
| ! | CATTCTAATTATCCTAATCT+TGG | + | chr1_2:10842955-10842974 | None:intergenic | 25.0% |
| ! | GGATAATTAGAATGTGAAAA+TGG | - | chr1_2:10842961-10842980 | Msa0055700:intron | 25.0% |
| !! | AGGAAGTTGGTTTAAATTTA+TGG | + | chr1_2:10843290-10843309 | None:intergenic | 25.0% |
| ! | ATTCTATATTCATAGGAAGT+TGG | + | chr1_2:10843303-10843322 | None:intergenic | 25.0% |
| ! | GAATTTGTATACATGTATCA+TGG | + | chr1_2:10843427-10843446 | None:intergenic | 25.0% |
| ! | ATCAGATTCAGATTGTTTCT+TGG | - | chr1_2:10839937-10839956 | Msa0055700:CDS | 30.0% |
| ! | TCAGATTCAGATTGTTTCTT+GGG | - | chr1_2:10839938-10839957 | Msa0055700:CDS | 30.0% |
| GTGAAAACAAGTATTCAACT+GGG | - | chr1_2:10840197-10840216 | Msa0055700:intron | 30.0% | |
| GATCAAAGATCGATTGATAA+TGG | - | chr1_2:10840241-10840260 | Msa0055700:intron | 30.0% | |
| !! | TTTTAGGAGGAATATCAACT+TGG | + | chr1_2:10840291-10840310 | None:intergenic | 30.0% |
| TTGATATTCCTCCTAAAATG+TGG | - | chr1_2:10840293-10840312 | Msa0055700:intron | 30.0% | |
| ! | CTTATATTCCACATTTTAGG+AGG | + | chr1_2:10840304-10840323 | None:intergenic | 30.0% |
| AAATGCATAGCTGCAAAATT+CGG | + | chr1_2:10840359-10840378 | None:intergenic | 30.0% | |
| ACAGCTTCTTCCAATAATAA+TGG | - | chr1_2:10840496-10840515 | Msa0055700:intron | 30.0% | |
| GTTCTTGCATCCATTATTAT+TGG | + | chr1_2:10840509-10840528 | None:intergenic | 30.0% | |
| TTAACCCACAAAATTGACAT+CGG | - | chr1_2:10840778-10840797 | Msa0055700:intron | 30.0% | |
| TAAATCCATTTGGATTGCTT+TGG | + | chr1_2:10840855-10840874 | None:intergenic | 30.0% | |
| ! | GTTGATCTTTAGTCTTTACT+AGG | - | chr1_2:10840887-10840906 | Msa0055700:intron | 30.0% |
| ! | TTTAGGCTAAACTACACTTT+TGG | - | chr1_2:10841050-10841069 | Msa0055700:intron | 30.0% |
| ! | CAAAGGTGTATCTGAATAAA+TGG | - | chr1_2:10841638-10841657 | Msa0055700:intron | 30.0% |
| !!! | TCCCATATTTTTAGCACAAA+CGG | - | chr1_2:10841677-10841696 | Msa0055700:intron | 30.0% |
| TCCGTTTGTGCTAAAAATAT+GGG | + | chr1_2:10841681-10841700 | None:intergenic | 30.0% | |
| TTCCGTTTGTGCTAAAAATA+TGG | + | chr1_2:10841682-10841701 | None:intergenic | 30.0% | |
| TCTAGACCGAAAAAAAAGTA+AGG | - | chr1_2:10842123-10842142 | Msa0055700:intron | 30.0% | |
| !! | GTATATAGTTTGTTGTGAGA+GGG | + | chr1_2:10842300-10842319 | None:intergenic | 30.0% |
| !! | TGTATATAGTTTGTTGTGAG+AGG | + | chr1_2:10842301-10842320 | None:intergenic | 30.0% |
| ! | AATGAGAAGGTTGATTTCAA+AGG | + | chr1_2:10842824-10842843 | None:intergenic | 30.0% |
| !! | TTGTTGTTGGTGATATTCTA+AGG | - | chr1_2:10843129-10843148 | Msa0055700:intron | 30.0% |
| !! | TGTTGTTGGTGATATTCTAA+GGG | - | chr1_2:10843130-10843149 | Msa0055700:intron | 30.0% |
| ! | GTCTAAGTAGTAAGAGTTTT+GGG | + | chr1_2:10843580-10843599 | None:intergenic | 30.0% |
| ! | AGTCTAAGTAGTAAGAGTTT+TGG | + | chr1_2:10843581-10843600 | None:intergenic | 30.0% |
| !! | TTTGGGTATTTTTGATGAGA+TGG | + | chr1_2:10843659-10843678 | None:intergenic | 30.0% |
| ! | TAAATGGTGAGATGAGTTTT+GGG | + | chr1_2:10843676-10843695 | None:intergenic | 30.0% |
| ! | ATAAATGGTGAGATGAGTTT+TGG | + | chr1_2:10843677-10843696 | None:intergenic | 30.0% |
| TCGTTTATGGCAAATGGATA+TGG | + | chr1_2:10839911-10839930 | None:intergenic | 35.0% | |
| !! | ATCTGATGAAGTGTCGTTTA+TGG | + | chr1_2:10839924-10839943 | None:intergenic | 35.0% |
| TTGGATTCATTGCAAATGAG+TGG | + | chr1_2:10839977-10839996 | None:intergenic | 35.0% | |
| ! | CAAGTTACTCGCGTATATTT+TGG | + | chr1_2:10839996-10840015 | None:intergenic | 35.0% |
| CAAAATATACGCGAGTAACT+TGG | - | chr1_2:10839994-10840013 | Msa0055700:intron | 35.0% | |
| !! | ACTGTTGGTTCTAACAGTTA+CGG | - | chr1_2:10840154-10840173 | Msa0055700:intron | 35.0% |
| GGTGAAAACAAGTATTCAAC+TGG | - | chr1_2:10840196-10840215 | Msa0055700:intron | 35.0% | |
| AATGGAAAATGTTCGGGTAT+AGG | - | chr1_2:10840259-10840278 | Msa0055700:intron | 35.0% | |
| ATGGAAAATGTTCGGGTATA+GGG | - | chr1_2:10840260-10840279 | Msa0055700:intron | 35.0% | |
| TCATCCACTCATTTATCACA+AGG | - | chr1_2:10840406-10840425 | Msa0055700:intron | 35.0% | |
| TACACCTTGTGATAAATGAG+TGG | + | chr1_2:10840413-10840432 | None:intergenic | 35.0% | |
| CAATAGTCATTGTTATGACC+AGG | - | chr1_2:10840528-10840547 | Msa0055700:intron | 35.0% | |
| !! | AGATGCAATACAGGTTTTGA+AGG | - | chr1_2:10840574-10840593 | Msa0055700:intron | 35.0% |
| TCATTGACATACTAATCCGA+AGG | - | chr1_2:10840695-10840714 | Msa0055700:intron | 35.0% | |
| ! | TGGTGTTTTACTTGAGATCT+TGG | + | chr1_2:10840835-10840854 | None:intergenic | 35.0% |
| AAACACCAAAGCAATCCAAA+TGG | - | chr1_2:10840847-10840866 | Msa0055700:intron | 35.0% | |
| TGTGTGTGTGTATTAAAGTG+AGG | - | chr1_2:10841192-10841211 | Msa0055700:intron | 35.0% | |
| ACCAATAAAAAGGCTCCAAT+TGG | - | chr1_2:10841282-10841301 | Msa0055700:intron | 35.0% | |
| ! | ACCAATTGGAGCCTTTTTAT+TGG | + | chr1_2:10841286-10841305 | None:intergenic | 35.0% |
| AAGAGAAAATGTGCTTGTGT+GGG | + | chr1_2:10841581-10841600 | None:intergenic | 35.0% | |
| AAAGAGAAAATGTGCTTGTG+TGG | + | chr1_2:10841582-10841601 | None:intergenic | 35.0% | |
| ! | TGATTGGTTGACATCATCAA+TGG | + | chr1_2:10842068-10842087 | None:intergenic | 35.0% |
| AATCAACCTTCTCATTCTTC+AGG | - | chr1_2:10842828-10842847 | Msa0055700:intron | 35.0% | |
| AAATATGGAGACCCAAGATT+AGG | - | chr1_2:10842940-10842959 | Msa0055700:intron | 35.0% | |
| TATACAAATTCCACCATCGT+TGG | - | chr1_2:10843436-10843455 | Msa0055700:intron | 35.0% | |
| ACACATGACCACATGTTTAA+AGG | - | chr1_2:10843552-10843571 | Msa0055700:intron | 35.0% | |
| CACATGACCACATGTTTAAA+GGG | - | chr1_2:10843553-10843572 | Msa0055700:intron | 35.0% | |
| GTATCTACATCGTGATGTTT+GGG | + | chr1_2:10843794-10843813 | None:intergenic | 35.0% | |
| TGTATCTACATCGTGATGTT+TGG | + | chr1_2:10843795-10843814 | None:intergenic | 35.0% | |
| AGGATTGTATAGACGAGATT+TGG | - | chr1_2:10843915-10843934 | Msa0055700:CDS | 35.0% | |
| !! | GAAGTGTCGTTTATGGCAAA+TGG | + | chr1_2:10839917-10839936 | None:intergenic | 40.0% |
| ! | GATTCAGATTGTTTCTTGGG+TGG | - | chr1_2:10839941-10839960 | Msa0055700:CDS | 40.0% |
| ! | TATGTCTCCAAGTATTGCGA+TGG | - | chr1_2:10840064-10840083 | Msa0055700:intron | 40.0% |
| AACAAGACCATCGCAATACT+TGG | + | chr1_2:10840074-10840093 | None:intergenic | 40.0% | |
| !! | CGATGGTCTTGTTAATAAGC+CGG | - | chr1_2:10840081-10840100 | Msa0055700:intron | 40.0% |
| TATGAACCACTGTTAAGCTC+CGG | + | chr1_2:10840103-10840122 | None:intergenic | 40.0% | |
| ! | GGGTGCTTAACAAGATCTTT+TGG | - | chr1_2:10840217-10840236 | Msa0055700:intron | 40.0% |
| GCTTTCATTAATGTCGCCAA+TGG | + | chr1_2:10840470-10840489 | None:intergenic | 40.0% | |
| TCATTGTTATGACCAGGACA+TGG | - | chr1_2:10840534-10840553 | Msa0055700:intron | 40.0% | |
| ! | TATGACCAGGACATGGATTT+TGG | - | chr1_2:10840541-10840560 | Msa0055700:intron | 40.0% |
| TACCAATGCAGATGCAATAC+AGG | - | chr1_2:10840565-10840584 | Msa0055700:intron | 40.0% | |
| AACCTGTATTGCATCTGCAT+TGG | + | chr1_2:10840570-10840589 | None:intergenic | 40.0% | |
| GGAAATCCTTATCATCCCAA+TGG | - | chr1_2:10840595-10840614 | Msa0055700:intron | 40.0% | |
| ! | CGATCCGATGTCAATTTTGT+GGG | + | chr1_2:10840785-10840804 | None:intergenic | 40.0% |
| ! | TCGATCCGATGTCAATTTTG+TGG | + | chr1_2:10840786-10840805 | None:intergenic | 40.0% |
| AAATTGACATCGGATCGAAC+CGG | - | chr1_2:10840788-10840807 | Msa0055700:intron | 40.0% | |
| ATCTTGGAACGACTTGATCA+AGG | + | chr1_2:10840944-10840963 | None:intergenic | 40.0% | |
| !! | CACGTGTCATGTTTTTGTGT+GGG | + | chr1_2:10841547-10841566 | None:intergenic | 40.0% |
| AGAGAAAATGTGCTTGTGTG+GGG | + | chr1_2:10841580-10841599 | None:intergenic | 40.0% | |
| GTCAAACCTGAAGAATGAGA+AGG | + | chr1_2:10842837-10842856 | None:intergenic | 40.0% | |
| AGATTAATCATCGCCAACGA+TGG | + | chr1_2:10843452-10843471 | None:intergenic | 40.0% | |
| GATTAATCTCCGTCAGGAAT+CGG | - | chr1_2:10843463-10843482 | Msa0055700:intron | 40.0% | |
| TTTGGGTCCCTTTAAACATG+TGG | + | chr1_2:10843563-10843582 | None:intergenic | 40.0% | |
| ! | GATGTTTGGGTTTGGATATG+TGG | + | chr1_2:10843781-10843800 | None:intergenic | 40.0% |
| ! | TACATCGTGATGTTTGGGTT+TGG | + | chr1_2:10843789-10843808 | None:intergenic | 40.0% |
| CACGATGTAGATACAGAAGA+TGG | - | chr1_2:10843800-10843819 | Msa0055700:CDS | 40.0% | |
| GATGTAGATACAGAAGATGG+TGG | - | chr1_2:10843803-10843822 | Msa0055700:CDS | 40.0% | |
| TTCGTCCTTCAATCATTCTC+TGG | - | chr1_2:10843941-10843960 | Msa0055700:CDS | 40.0% | |
| CTTCAATCATTCTCTGGTGT+CGG | - | chr1_2:10843947-10843966 | Msa0055700:CDS | 40.0% | |
| CTGGTGCTTTCTACAATTGT+TGG | - | chr1_2:10844018-10844037 | Msa0055700:CDS | 40.0% | |
| GTGCTTTCTACAATTGTTGG+TGG | - | chr1_2:10844021-10844040 | Msa0055700:CDS | 40.0% | |
| !! | TCTACAATTGTTGGTGGTGA+TGG | - | chr1_2:10844027-10844046 | Msa0055700:CDS | 40.0% |
| !! | CTACAATTGTTGGTGGTGAT+GGG | - | chr1_2:10844028-10844047 | Msa0055700:CDS | 40.0% |
| !! | TACAATTGTTGGTGGTGATG+GGG | - | chr1_2:10844029-10844048 | Msa0055700:CDS | 40.0% |
| AGAGATGGAGGTTATTGTTG+TGG | - | chr1_2:10844220-10844239 | Msa0055700:CDS | 40.0% | |
| TGGATTGAGTGGTGATTTAG+AGG | - | chr1_2:10844315-10844334 | Msa0055700:CDS | 40.0% | |
| GGATTGAGTGGTGATTTAGA+GGG | - | chr1_2:10844316-10844335 | Msa0055700:CDS | 40.0% | |
| GATTGAGTGGTGATTTAGAG+GGG | - | chr1_2:10844317-10844336 | Msa0055700:CDS | 40.0% | |
| ATTGAGTGGTGATTTAGAGG+GGG | - | chr1_2:10844318-10844337 | Msa0055700:CDS | 40.0% | |
| GCATGTGTATGTGTTAGCCA+TGG | - | chr1_2:10839808-10839827 | Msa0055700:CDS | 45.0% | |
| TGTGTATGTGTTAGCCATGG+TGG | - | chr1_2:10839811-10839830 | Msa0055700:CDS | 45.0% | |
| AATACCTGCAGTCACACTTG+TGG | - | chr1_2:10839872-10839891 | Msa0055700:CDS | 45.0% | |
| AATAAGCCGGAGCTTAACAG+TGG | - | chr1_2:10840094-10840113 | Msa0055700:intron | 45.0% | |
| ATCACAAGGTGTACCTGACA+AGG | - | chr1_2:10840420-10840439 | Msa0055700:intron | 45.0% | |
| ACCTGACAAGGAATTACCTG+TGG | - | chr1_2:10840432-10840451 | Msa0055700:intron | 45.0% | |
| ACCACAGGTAATTCCTTGTC+AGG | + | chr1_2:10840436-10840455 | None:intergenic | 45.0% | |
| AATTACCTGTGGTTCTCGAC+TGG | - | chr1_2:10840443-10840462 | Msa0055700:intron | 45.0% | |
| GGTAACCAAAATCCATGTCC+TGG | + | chr1_2:10840549-10840568 | None:intergenic | 45.0% | |
| AATTGACCTGTGCAGCCATT+GGG | + | chr1_2:10840613-10840632 | None:intergenic | 45.0% | |
| AAATTGACCTGTGCAGCCAT+TGG | + | chr1_2:10840614-10840633 | None:intergenic | 45.0% | |
| TAAATAGGGCTGTCGCACAT+GGG | + | chr1_2:10840742-10840761 | None:intergenic | 45.0% | |
| TTAAATAGGGCTGTCGCACA+TGG | + | chr1_2:10840743-10840762 | None:intergenic | 45.0% | |
| TGGAACGACTTGATCAAGGA+CGG | + | chr1_2:10840940-10840959 | None:intergenic | 45.0% | |
| !! | CCACGTGTCATGTTTTTGTG+TGG | + | chr1_2:10841548-10841567 | None:intergenic | 45.0% |
| CCACACAAAAACATGACACG+TGG | - | chr1_2:10841545-10841564 | Msa0055700:intron | 45.0% | |
| ATGCACTAGGAAGAGAGAAG+AGG | + | chr1_2:10841610-10841629 | None:intergenic | 45.0% | |
| TCTTCTCTCTTCCTAGTGCA+TGG | - | chr1_2:10841609-10841628 | Msa0055700:intron | 45.0% | |
| CTTCTCTCTTCCTAGTGCAT+GGG | - | chr1_2:10841610-10841629 | Msa0055700:intron | 45.0% | |
| TTCTCTCTTCCTAGTGCATG+GGG | - | chr1_2:10841611-10841630 | Msa0055700:intron | 45.0% | |
| TTAATCATCGCCAACGATGG+TGG | + | chr1_2:10843449-10843468 | None:intergenic | 45.0% | |
| TTGGGTTTGGATATGTGGAG+CGG | + | chr1_2:10843776-10843795 | None:intergenic | 45.0% | |
| AAGAAACGCTGGAGGAGAAA+GGG | + | chr1_2:10843863-10843882 | None:intergenic | 45.0% | |
| AAAGAAACGCTGGAGGAGAA+AGG | + | chr1_2:10843864-10843883 | None:intergenic | 45.0% | |
| AAAGACGAAAGAAACGCTGG+AGG | + | chr1_2:10843871-10843890 | None:intergenic | 45.0% | |
| GAGAAAGACGAAAGAAACGC+TGG | + | chr1_2:10843874-10843893 | None:intergenic | 45.0% | |
| TTTGCAATCGTCGTCGTCAA+AGG | - | chr1_2:10843895-10843914 | Msa0055700:CDS | 45.0% | |
| CGACACCAGAGAATGATTGA+AGG | + | chr1_2:10843949-10843968 | None:intergenic | 45.0% | |
| !! | ACAATTGTTGGTGGTGATGG+GGG | - | chr1_2:10844030-10844049 | Msa0055700:CDS | 45.0% |
| !! | TGGAAGGTTTTGTGCAGATG+TGG | - | chr1_2:10844115-10844134 | Msa0055700:intron | 45.0% |
| GGTTATTGTTGTGGTGACAC+CGG | - | chr1_2:10844229-10844248 | Msa0055700:CDS | 45.0% | |
| GTTATTGTTGTGGTGACACC+GGG | - | chr1_2:10844230-10844249 | Msa0055700:CDS | 45.0% | |
| TTATTGTTGTGGTGACACCG+GGG | - | chr1_2:10844231-10844250 | Msa0055700:CDS | 45.0% | |
| !! | ATGGAGGTGTTTGGATTGAG+TGG | - | chr1_2:10844304-10844323 | Msa0055700:CDS | 45.0% |
| TTGAGTGGTGATTTAGAGGG+GGG | - | chr1_2:10844319-10844338 | Msa0055700:CDS | 45.0% | |
| !!! | TTTTTTTATTTTTTTAAACT+TGG | - | chr1_2:10840665-10840684 | Msa0055700:intron | 5.0% |
| !! | ATATAATAATGATATTATTT+AGG | - | chr1_2:10841033-10841052 | Msa0055700:intron | 5.0% |
| !! | TTCTTAAAAATAATTATAAA+TGG | + | chr1_2:10843692-10843711 | None:intergenic | 5.0% |
| GTTAGCCATGGTGGTTGTAC+TGG | - | chr1_2:10839820-10839839 | Msa0055700:CDS | 50.0% | |
| TCCTACCAGTACAACCACCA+TGG | + | chr1_2:10839828-10839847 | None:intergenic | 50.0% | |
| GTGCAGCCATTGGGATGATA+AGG | + | chr1_2:10840604-10840623 | None:intergenic | 50.0% | |
| TATCATCCCAATGGCTGCAC+AGG | - | chr1_2:10840604-10840623 | Msa0055700:intron | 50.0% | |
| ! | CCATGGTGGAATTGGACCTT+CGG | + | chr1_2:10840714-10840733 | None:intergenic | 50.0% |
| GGAACGACTTGATCAAGGAC+GGG | + | chr1_2:10840939-10840958 | None:intergenic | 50.0% | |
| CTTTGAACACCCCATGCACT+AGG | + | chr1_2:10841623-10841642 | None:intergenic | 50.0% | |
| ! | CTAGTGCATGGGGTGTTCAA+AGG | - | chr1_2:10841621-10841640 | Msa0055700:intron | 50.0% |
| GGCGATGATTAATCTCCGTC+AGG | - | chr1_2:10843457-10843476 | Msa0055700:intron | 50.0% | |
| TAATCTCCGTCAGGAATCGG+TGG | - | chr1_2:10843466-10843485 | Msa0055700:intron | 50.0% | |
| AATCTCCGTCAGGAATCGGT+GGG | - | chr1_2:10843467-10843486 | Msa0055700:intron | 50.0% | |
| GGAGGTTTGGATATGTGGAG+CGG | + | chr1_2:10843738-10843757 | None:intergenic | 50.0% | |
| TCTGGGGAGGTTTGGATATG+TGG | + | chr1_2:10843743-10843762 | None:intergenic | 50.0% | |
| !! | TCATTCTCTGGTGTCGGTTC+AGG | - | chr1_2:10843953-10843972 | Msa0055700:CDS | 50.0% |
| !! | CATTCTCTGGTGTCGGTTCA+GGG | - | chr1_2:10843954-10843973 | Msa0055700:CDS | 50.0% |
| GTTCAGGGTTCTTCGAAGGT+CGG | - | chr1_2:10843969-10843988 | Msa0055700:CDS | 50.0% | |
| ! | AGGTTGTTATGGTGGCGATG+AGG | - | chr1_2:10844061-10844080 | Msa0055700:CDS | 50.0% |
| TGGCGATGAGGTTGTTACAG+TGG | - | chr1_2:10844073-10844092 | Msa0055700:CDS | 50.0% | |
| ! | AGGTTGTTACAGTGGTGACG+AGG | - | chr1_2:10844081-10844100 | Msa0055700:CDS | 50.0% |
| ! | TTGTTACAGTGGTGACGAGG+TGG | - | chr1_2:10844084-10844103 | Msa0055700:CDS | 50.0% |
| !! | TGTAGTGTTGTGCCGTTTGC+AGG | - | chr1_2:10844141-10844160 | Msa0055700:CDS | 50.0% |
| TCACTCTCACCACCTGCAAA+CGG | + | chr1_2:10844156-10844175 | None:intergenic | 50.0% | |
| ! | GCCATGGTGGTTGTACTGGT+AGG | - | chr1_2:10839824-10839843 | Msa0055700:CDS | 55.0% |
| ACCTGCAGTCACACTTGTGG+AGG | - | chr1_2:10839875-10839894 | Msa0055700:CDS | 55.0% | |
| ACCTCCACAAGTGTGACTGC+AGG | + | chr1_2:10839879-10839898 | None:intergenic | 55.0% | |
| ATGGTCCAGTCGAGAACCAC+AGG | + | chr1_2:10840451-10840470 | None:intergenic | 55.0% | |
| GTGGTTCTCGACTGGACCAT+TGG | - | chr1_2:10840451-10840470 | Msa0055700:intron | 55.0% | |
| CCGAAGGTCCAATTCCACCA+TGG | - | chr1_2:10840711-10840730 | Msa0055700:intron | 55.0% | |
| ATCTCCGTCAGGAATCGGTG+GGG | - | chr1_2:10843468-10843487 | Msa0055700:intron | 55.0% | |
| AGGAATCGGTGGGGCACAAA+AGG | - | chr1_2:10843477-10843496 | Msa0055700:intron | 55.0% | |
| AATCGGTGGGGCACAAAAGG+TGG | - | chr1_2:10843480-10843499 | Msa0055700:intron | 55.0% | |
| ATCGGTGGGGCACAAAAGGT+GGG | - | chr1_2:10843481-10843500 | Msa0055700:intron | 55.0% | |
| GGTTTGGATATGTGGAGCGG+CGG | + | chr1_2:10843735-10843754 | None:intergenic | 55.0% | |
| GCTGTAGATCTGGGGAGGTT+TGG | + | chr1_2:10843751-10843770 | None:intergenic | 55.0% | |
| GGTTTGGATATGTGGAGCGG+CGG | + | chr1_2:10843735-10843754 | None:intergenic | 55.0% | |
| ! | GTCGGTTCAGGGTTCTTCGA+AGG | - | chr1_2:10843965-10843984 | Msa0055700:CDS | 55.0% |
| GTTCTTCGAAGGTCGGTTGC+TGG | - | chr1_2:10843976-10843995 | Msa0055700:CDS | 55.0% | |
| TTCGAAGGTCGGTTGCTGGA+GGG | - | chr1_2:10843980-10843999 | Msa0055700:CDS | 55.0% | |
| ! | AGGGCAGGGGATGTGTTTTC+TGG | - | chr1_2:10843999-10844018 | Msa0055700:CDS | 55.0% |
| !! | ATTGTTGGTGGTGATGGGGG+TGG | - | chr1_2:10844033-10844052 | Msa0055700:CDS | 55.0% |
| !! | TTGTTGGTGGTGATGGGGGT+GGG | - | chr1_2:10844034-10844053 | Msa0055700:CDS | 55.0% |
| ! | TGGGCTGGAGGTTGTTATGG+TGG | - | chr1_2:10844053-10844072 | Msa0055700:CDS | 55.0% |
| ! | TTACAGTGGTGACGAGGTGG+TGG | - | chr1_2:10844087-10844106 | Msa0055700:CDS | 55.0% |
| !! | AGTGTTGTGCCGTTTGCAGG+TGG | - | chr1_2:10844144-10844163 | Msa0055700:CDS | 55.0% |
| CAGGTGGTGAGAGTGAGTGT+CGG | - | chr1_2:10844160-10844179 | Msa0055700:CDS | 55.0% | |
| !! | GGTGGTGATGGCAGTAGAGA+TGG | - | chr1_2:10844205-10844224 | Msa0055700:CDS | 55.0% |
| ! | GGTGATGGCAGTAGAGATGG+AGG | - | chr1_2:10844208-10844227 | Msa0055700:CDS | 55.0% |
| GGTTTGTCTGTGTTGCGCGA+TGG | - | chr1_2:10844269-10844288 | Msa0055700:CDS | 55.0% | |
| TGTCTGTGTTGCGCGATGGT+TGG | - | chr1_2:10844273-10844292 | Msa0055700:CDS | 55.0% | |
| ATGGTTGGAGGAGGCAATGG+AGG | - | chr1_2:10844288-10844307 | Msa0055700:CDS | 55.0% | |
| !! | GAGGAGGCAATGGAGGTGTT+TGG | - | chr1_2:10844295-10844314 | Msa0055700:CDS | 55.0% |
| ! | GGGCGATGCCATGGTGGAAT+TGG | + | chr1_2:10840722-10840741 | None:intergenic | 60.0% |
| !! | TGTGCCCCACCGATTCCTGA+CGG | + | chr1_2:10843475-10843494 | None:intergenic | 60.0% |
| ! | CTGGAGGAGAAAGGGTGCGA+CGG | + | chr1_2:10843855-10843874 | None:intergenic | 60.0% |
| CTTCGAAGGTCGGTTGCTGG+AGG | - | chr1_2:10843979-10843998 | Msa0055700:CDS | 60.0% | |
| !! | GGGTGGGCTGGAGGTTGTTA+TGG | - | chr1_2:10844050-10844069 | Msa0055700:CDS | 60.0% |
| ! | GTGGTGACGAGGTGGTGGTT+TGG | - | chr1_2:10844092-10844111 | Msa0055700:CDS | 60.0% |
| ! | GTGACGAGGTGGTGGTTTGG+TGG | - | chr1_2:10844095-10844114 | Msa0055700:intron | 60.0% |
| !! | CGAGGTGGTGGTTTGGTGGA+AGG | - | chr1_2:10844099-10844118 | Msa0055700:intron | 60.0% |
| !! | GTGGTGAGAGTGAGTGTCGG+TGG | - | chr1_2:10844163-10844182 | Msa0055700:CDS | 60.0% |
| !! | GTGAGAGTGAGTGTCGGTGG+CGG | - | chr1_2:10844166-10844185 | Msa0055700:CDS | 60.0% |
| TGTTGTGGTGACACCGGGGA+TGG | - | chr1_2:10844235-10844254 | Msa0055700:CDS | 60.0% | |
| CTGTGTTGCGCGATGGTTGG+AGG | - | chr1_2:10844276-10844295 | Msa0055700:CDS | 60.0% | |
| TGTTGCGCGATGGTTGGAGG+AGG | - | chr1_2:10844279-10844298 | Msa0055700:CDS | 60.0% | |
| GCGATGGTTGGAGGAGGCAA+TGG | - | chr1_2:10844285-10844304 | Msa0055700:CDS | 60.0% | |
| GCACATGGGCGATGCCATGG+TGG | + | chr1_2:10840728-10840747 | None:intergenic | 65.0% | |
| GTCGCACATGGGCGATGCCA+TGG | + | chr1_2:10840731-10840750 | None:intergenic | 65.0% | |
| GAGCGGCGGCTGTAGATCTG+GGG | + | chr1_2:10843759-10843778 | None:intergenic | 65.0% | |
| GGAGCGGCGGCTGTAGATCT+GGG | + | chr1_2:10843760-10843779 | None:intergenic | 65.0% | |
| TGGAGCGGCGGCTGTAGATC+TGG | + | chr1_2:10843761-10843780 | None:intergenic | 65.0% | |
| ! | GAGGAGAAAGGGTGCGACGG+TGG | + | chr1_2:10843852-10843871 | None:intergenic | 65.0% |
| AAGGTCGGTTGCTGGAGGGC+AGG | - | chr1_2:10843984-10844003 | Msa0055700:CDS | 65.0% | |
| AGGTCGGTTGCTGGAGGGCA+GGG | - | chr1_2:10843985-10844004 | Msa0055700:CDS | 65.0% | |
| TGTGGTGACACCGGGGATGG+TGG | - | chr1_2:10844238-10844257 | Msa0055700:CDS | 65.0% | |
| ! | ACACCGGGGATGGTGGTGAC+AGG | - | chr1_2:10844245-10844264 | Msa0055700:CDS | 65.0% |
| ! | CACCGGGGATGGTGGTGACA+GGG | - | chr1_2:10844246-10844265 | Msa0055700:CDS | 65.0% |
| ! | ACCGGGGATGGTGGTGACAG+GGG | - | chr1_2:10844247-10844266 | Msa0055700:CDS | 65.0% |
| CGGCGGCTGTAGATCTGGGG+AGG | + | chr1_2:10843756-10843775 | None:intergenic | 70.0% | |
| GGTCGGTTGCTGGAGGGCAG+GGG | - | chr1_2:10843986-10844005 | Msa0055700:CDS | 70.0% | |
| !! | TGGTGGTGATGGGGGTGGGC+TGG | - | chr1_2:10844038-10844057 | Msa0055700:CDS | 70.0% |
| !! | TGGTGATGGGGGTGGGCTGG+AGG | - | chr1_2:10844041-10844060 | Msa0055700:CDS | 70.0% |
| !! | GTGAGTGTCGGTGGCGGCGA+TGG | - | chr1_2:10844172-10844191 | Msa0055700:CDS | 70.0% |
| CCCCCTGTCACCACCATCCC+CGG | + | chr1_2:10844251-10844270 | None:intergenic | 70.0% | |
| ! | CCGGGGATGGTGGTGACAGG+GGG | - | chr1_2:10844248-10844267 | Msa0055700:CDS | 70.0% |
| ! | GGTGGCGGCGATGGCAGCGT+CGG | - | chr1_2:10844181-10844200 | Msa0055700:CDS | 75.0% |
| !! | GGCAGCGTCGGCGGTGGTGA+TGG | - | chr1_2:10844193-10844212 | Msa0055700:CDS | 75.0% |
| !! | GGCGGCGATGGCAGCGTCGG+CGG | - | chr1_2:10844184-10844203 | Msa0055700:CDS | 80.0% |
| !!! | GGCGATGGCAGCGTCGGCGG+TGG | - | chr1_2:10844187-10844206 | Msa0055700:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 10839788 | 10844357 | 10839788 | ID=Msa0055700;Name=Msa0055700 |
| chr1_2 | mRNA | 10839788 | 10844357 | 10839788 | ID=Msa0055700-mRNA-1;Parent=Msa0055700;Name=Msa0055700-mRNA-1;_AED=0.48;_eAED=0.52;_QI=0|0|0|0.8|0|0.2|5|0|319 |
| chr1_2 | exon | 10844138 | 10844357 | 10844138 | ID=Msa0055700-mRNA-1:exon:4158;Parent=Msa0055700-mRNA-1 |
| chr1_2 | exon | 10843871 | 10844113 | 10843871 | ID=Msa0055700-mRNA-1:exon:4157;Parent=Msa0055700-mRNA-1 |
| chr1_2 | exon | 10843754 | 10843864 | 10843754 | ID=Msa0055700-mRNA-1:exon:4156;Parent=Msa0055700-mRNA-1 |
| chr1_2 | exon | 10843559 | 10843749 | 10843559 | ID=Msa0055700-mRNA-1:exon:4155;Parent=Msa0055700-mRNA-1 |
| chr1_2 | exon | 10839788 | 10839982 | 10839788 | ID=Msa0055700-mRNA-1:exon:4154;Parent=Msa0055700-mRNA-1 |
| chr1_2 | CDS | 10844138 | 10844357 | 10844138 | ID=Msa0055700-mRNA-1:cds;Parent=Msa0055700-mRNA-1 |
| chr1_2 | CDS | 10843871 | 10844113 | 10843871 | ID=Msa0055700-mRNA-1:cds;Parent=Msa0055700-mRNA-1 |
| chr1_2 | CDS | 10843754 | 10843864 | 10843754 | ID=Msa0055700-mRNA-1:cds;Parent=Msa0055700-mRNA-1 |
| chr1_2 | CDS | 10843559 | 10843749 | 10843559 | ID=Msa0055700-mRNA-1:cds;Parent=Msa0055700-mRNA-1 |
| chr1_2 | CDS | 10839788 | 10839982 | 10839788 | ID=Msa0055700-mRNA-1:cds;Parent=Msa0055700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
