Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060610 | XP_013466500.1 | 94.558 | 147 | 8 | 0 | 1 | 147 | 1 | 147 | 1.41e-98 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060610 | sp|Q93VP2|HIP22_ARATH | 59.868 | 152 | 56 | 2 | 1 | 147 | 1 | 152 | 2.77e-62 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060610 | A0A072VG10 | 94.558 | 147 | 8 | 0 | 1 | 147 | 1 | 147 | 6.72e-99 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055070 | Msa0060610 | 0.803306 | 3.712908e-49 | -8.615850e-47 |
| Msa0060610 | Msa0193540 | 0.802607 | 5.178824e-49 | -8.615850e-47 |
| Msa0060610 | Msa0274630 | 0.810221 | 1.283578e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060610 | MtrunA17_Chr1g0160201 | 94.558 | 147 | 8 | 0 | 1 | 147 | 1 | 147 | 1.29e-102 | 290 |
| Msa0060610 | MtrunA17_Chr5g0407821 | 71.429 | 147 | 40 | 1 | 1 | 147 | 1 | 145 | 7.76e-77 | 224 |
| Msa0060610 | MtrunA17_Chr7g0251491 | 63.514 | 148 | 51 | 3 | 1 | 147 | 25 | 170 | 1.49e-61 | 187 |
| Msa0060610 | MtrunA17_Chr6g0448861 | 58.710 | 155 | 56 | 3 | 1 | 147 | 1 | 155 | 7.65e-60 | 182 |
| Msa0060610 | MtrunA17_Chr3g0145621 | 53.205 | 156 | 64 | 3 | 1 | 147 | 1 | 156 | 9.47e-55 | 169 |
| Msa0060610 | MtrunA17_Chr3g0124411 | 56.376 | 149 | 61 | 3 | 2 | 147 | 5 | 152 | 1.39e-53 | 166 |
| Msa0060610 | MtrunA17_Chr4g0036931 | 52.564 | 156 | 65 | 3 | 1 | 147 | 1 | 156 | 3.77e-53 | 165 |
| Msa0060610 | MtrunA17_Chr5g0405811 | 52.866 | 157 | 64 | 4 | 1 | 147 | 1 | 157 | 1.05e-51 | 161 |
| Msa0060610 | MtrunA17_Chr5g0422891 | 46.939 | 147 | 78 | 0 | 1 | 147 | 1 | 147 | 2.76e-50 | 157 |
| Msa0060610 | MtrunA17_Chr8g0382721 | 55.705 | 149 | 63 | 2 | 2 | 147 | 5 | 153 | 5.56e-50 | 157 |
| Msa0060610 | MtrunA17_Chr3g0115421 | 51.020 | 147 | 69 | 2 | 2 | 147 | 5 | 149 | 3.11e-43 | 139 |
| Msa0060610 | MtrunA17_Chr2g0325601 | 35.374 | 147 | 67 | 4 | 24 | 147 | 1 | 142 | 1.81e-23 | 89.4 |
| Msa0060610 | MtrunA17_Chr1g0189221 | 54.412 | 68 | 31 | 0 | 24 | 91 | 52 | 119 | 1.12e-22 | 88.2 |
| Msa0060610 | MtrunA17_Chr3g0080011 | 71.698 | 53 | 14 | 1 | 1 | 53 | 25 | 76 | 5.65e-19 | 76.6 |
| Msa0060610 | MtrunA17_Chr6g0471231 | 37.500 | 136 | 70 | 5 | 27 | 147 | 5 | 140 | 7.29e-19 | 77.4 |
| Msa0060610 | MtrunA17_Chr6g0460361 | 32.743 | 113 | 54 | 4 | 51 | 147 | 4 | 110 | 7.42e-15 | 66.2 |
| Msa0060610 | MtrunA17_Chr1g0208301 | 45.455 | 66 | 36 | 0 | 24 | 89 | 12 | 77 | 4.83e-14 | 67.8 |
| Msa0060610 | MtrunA17_Chr2g0287751 | 45.455 | 66 | 36 | 0 | 24 | 89 | 9 | 74 | 6.51e-14 | 67.8 |
| Msa0060610 | MtrunA17_Chr4g0065651 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 2.11e-13 | 66.2 |
| Msa0060610 | MtrunA17_Chr0c22g0493881 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 2.18e-13 | 65.9 |
| Msa0060610 | MtrunA17_Chr7g0269081 | 41.538 | 65 | 38 | 0 | 25 | 89 | 22 | 86 | 2.47e-13 | 65.5 |
| Msa0060610 | MtrunA17_Chr4g0065621 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 4.78e-13 | 65.1 |
| Msa0060610 | MtrunA17_Chr7g0218981 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 4.92e-13 | 62.0 |
| Msa0060610 | MtrunA17_Chr1g0191671 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 7.56e-13 | 64.7 |
| Msa0060610 | MtrunA17_Chr4g0050451 | 36.471 | 85 | 51 | 2 | 24 | 108 | 1 | 82 | 1.02e-12 | 60.1 |
| Msa0060610 | MtrunA17_Chr1g0198341 | 41.538 | 65 | 38 | 0 | 25 | 89 | 4 | 68 | 1.29e-12 | 59.7 |
| Msa0060610 | MtrunA17_Chr7g0272571 | 43.548 | 62 | 35 | 0 | 29 | 90 | 37 | 98 | 2.82e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060610 | AT1G22990.1 | 59.868 | 152 | 56 | 2 | 1 | 147 | 1 | 152 | 2.81e-63 | 191 |
| Msa0060610 | AT1G71050.1 | 61.842 | 152 | 53 | 2 | 1 | 147 | 1 | 152 | 3.35e-60 | 183 |
| Msa0060610 | AT1G22990.2 | 57.237 | 152 | 55 | 3 | 1 | 147 | 1 | 147 | 3.38e-58 | 178 |
| Msa0060610 | AT5G17450.1 | 57.718 | 149 | 61 | 2 | 1 | 147 | 1 | 149 | 4.85e-56 | 172 |
| Msa0060610 | AT4G38580.1 | 51.634 | 153 | 68 | 3 | 1 | 147 | 1 | 153 | 2.21e-50 | 158 |
| Msa0060610 | AT4G38580.2 | 51.634 | 153 | 68 | 3 | 1 | 147 | 1 | 153 | 2.21e-50 | 158 |
| Msa0060610 | AT4G39700.1 | 53.896 | 154 | 63 | 2 | 2 | 147 | 5 | 158 | 2.16e-47 | 150 |
| Msa0060610 | AT5G66110.3 | 52.857 | 140 | 60 | 2 | 14 | 147 | 8 | 147 | 4.20e-47 | 150 |
| Msa0060610 | AT5G66110.1 | 52.857 | 140 | 60 | 2 | 14 | 147 | 8 | 147 | 4.20e-47 | 150 |
| Msa0060610 | AT4G35060.1 | 43.791 | 153 | 80 | 2 | 1 | 147 | 1 | 153 | 2.18e-46 | 148 |
| Msa0060610 | AT5G66110.2 | 52.066 | 121 | 52 | 2 | 33 | 147 | 1 | 121 | 2.06e-41 | 134 |
| Msa0060610 | AT4G08570.1 | 45.946 | 148 | 76 | 3 | 2 | 147 | 5 | 150 | 2.42e-40 | 132 |
| Msa0060610 | AT5G17450.2 | 56.122 | 98 | 42 | 1 | 51 | 147 | 8 | 105 | 1.60e-37 | 124 |
| Msa0060610 | AT1G06330.1 | 37.013 | 154 | 63 | 4 | 24 | 147 | 1 | 150 | 7.79e-27 | 98.6 |
| Msa0060610 | AT2G18196.1 | 36.170 | 141 | 66 | 3 | 24 | 147 | 45 | 178 | 3.69e-26 | 97.4 |
| Msa0060610 | AT4G10465.1 | 34.211 | 152 | 90 | 2 | 6 | 147 | 32 | 183 | 8.14e-26 | 97.1 |
| Msa0060610 | AT3G56891.1 | 36.774 | 155 | 64 | 6 | 24 | 147 | 15 | 166 | 2.97e-24 | 92.4 |
| Msa0060610 | AT3G56891.2 | 36.986 | 146 | 58 | 6 | 33 | 147 | 1 | 143 | 3.17e-22 | 86.7 |
| Msa0060610 | AT2G18196.2 | 35.606 | 132 | 61 | 3 | 33 | 147 | 1 | 125 | 5.20e-22 | 85.5 |
| Msa0060610 | AT1G29100.2 | 34.228 | 149 | 66 | 5 | 26 | 147 | 4 | 147 | 2.93e-18 | 76.3 |
| Msa0060610 | AT1G29100.1 | 33.562 | 146 | 65 | 5 | 29 | 147 | 1 | 141 | 6.59e-17 | 72.8 |
| Msa0060610 | AT3G48970.2 | 40.146 | 137 | 67 | 6 | 26 | 147 | 2 | 138 | 6.48e-15 | 67.4 |
| Msa0060610 | AT3G48970.3 | 40.146 | 137 | 67 | 6 | 26 | 147 | 2 | 138 | 6.48e-15 | 67.4 |
| Msa0060610 | AT3G48970.1 | 40.146 | 137 | 67 | 6 | 26 | 147 | 4 | 140 | 6.49e-15 | 67.4 |
| Msa0060610 | AT1G66240.1 | 43.077 | 65 | 37 | 0 | 25 | 89 | 33 | 97 | 3.46e-13 | 62.0 |
| Msa0060610 | AT3G06130.1 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 6.12e-13 | 65.5 |
| Msa0060610 | AT3G06130.2 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 9.36e-13 | 64.7 |
| Msa0060610 | AT5G27690.1 | 37.805 | 82 | 43 | 2 | 11 | 90 | 20 | 95 | 1.09e-12 | 64.3 |
| Msa0060610 | AT5G19090.5 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.73e-12 | 63.9 |
| Msa0060610 | AT5G19090.4 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.73e-12 | 63.9 |
| Msa0060610 | AT5G19090.1 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.73e-12 | 63.9 |
| Msa0060610 | AT5G19090.2 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.81e-12 | 63.9 |
| Msa0060610 | AT5G19090.3 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.81e-12 | 63.9 |
| Msa0060610 | AT3G56240.3 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 3.19e-12 | 60.1 |
| Msa0060610 | AT3G56240.1 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 3.19e-12 | 60.1 |
| Msa0060610 | AT1G23000.2 | 37.879 | 66 | 41 | 0 | 24 | 89 | 72 | 137 | 2.14e-11 | 60.8 |
| Msa0060610 | AT1G23000.1 | 37.143 | 70 | 44 | 0 | 24 | 93 | 12 | 81 | 3.10e-11 | 60.1 |
| Msa0060610 | AT1G56210.1 | 43.077 | 65 | 37 | 0 | 29 | 93 | 44 | 108 | 9.28e-11 | 58.9 |
Find 30 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGCATTGTTACATTA+TGG | 0.213671 | 1_2:-18389008 | None:intergenic |
| AGTTTCTCATCCATTGCATT+AGG | 0.260018 | 1_2:-18388947 | None:intergenic |
| TCTGTTTCTTTGCTTGAAAA+AGG | 0.277686 | 1_2:+18386708 | Msa0060610:five_prime_UTR |
| ACCAAGTTGTATGGAATATA+TGG | 0.307606 | 1_2:-18388842 | None:intergenic |
| TACATTATGGAACATGCATT+AGG | 0.317863 | 1_2:-18388995 | None:intergenic |
| CCATTGCATTAGGGCTAGAT+AGG | 0.321317 | 1_2:-18388937 | None:intergenic |
| GGTTGAAATCAAGGTGAAAA+TGG | 0.336258 | 1_2:+18386904 | Msa0060610:CDS |
| ACATTATGGAACATGCATTA+GGG | 0.359404 | 1_2:-18388994 | None:intergenic |
| GTTTCTCATCCATTGCATTA+GGG | 0.401204 | 1_2:-18388946 | None:intergenic |
| CAAAGCAAAGTAACTGTTAG+TGG | 0.418002 | 1_2:+18388755 | Msa0060610:CDS |
| CTTGCAGACGGTTGAAATCA+AGG | 0.426981 | 1_2:+18386895 | Msa0060610:intron |
| GGATAAGCCACCAAGTTGTA+TGG | 0.438268 | 1_2:-18388851 | None:intergenic |
| TCATATGCTTGTGATACATA+AGG | 0.461205 | 1_2:-18388872 | None:intergenic |
| TGACAGAGAGAAAGGGGAAA+AGG | 0.466396 | 1_2:-18386665 | None:intergenic |
| AATTCTGTTGCTTACATGAA+AGG | 0.476868 | 1_2:+18386956 | Msa0060610:CDS |
| GCCATATATTCCATACAACT+TGG | 0.516330 | 1_2:+18388841 | Msa0060610:CDS |
| GAACTGATGGTAACCTGCAT+TGG | 0.520387 | 1_2:-18386806 | None:intergenic |
| ATGGCTGTGAAAGAAAAGTT+AGG | 0.524948 | 1_2:+18386933 | Msa0060610:CDS |
| GACAGAGAGAAAGGGGAAAA+GGG | 0.540773 | 1_2:-18386664 | None:intergenic |
| CATTGCATTAGGGCTAGATA+GGG | 0.551283 | 1_2:-18388936 | None:intergenic |
| TGTGTGTGTGACAGAGAGAA+AGG | 0.555006 | 1_2:-18386673 | None:intergenic |
| ATATATTCCATACAACTTGG+TGG | 0.560676 | 1_2:+18388844 | Msa0060610:CDS |
| GTGTGTGTGACAGAGAGAAA+GGG | 0.564644 | 1_2:-18386672 | None:intergenic |
| TATGACAAGAAAGCACCAGC+TGG | 0.601918 | 1_2:+18388890 | Msa0060610:CDS |
| TTAAAGAAAATACAGAACAC+TGG | 0.609096 | 1_2:+18388800 | Msa0060610:CDS |
| CCTATCTAGCCCTAATGCAA+TGG | 0.610095 | 1_2:+18388937 | Msa0060610:CDS |
| ACATGCAGGTGTGAAGCAAG+TGG | 0.614788 | 1_2:+18388718 | Msa0060610:intron |
| TGTGTGTGACAGAGAGAAAG+GGG | 0.628229 | 1_2:-18386671 | None:intergenic |
| TGCAGGTGTGAAGCAAGTGG+AGG | 0.674599 | 1_2:+18388721 | Msa0060610:intron |
| AAGGTGAAAATGGACTGTGA+TGG | 0.723533 | 1_2:+18386914 | Msa0060610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATAATATTAACAAAG+AGG | - | chr1_2:18386868-18386887 | None:intergenic | 15.0% |
| !!! | TTCAAAGAGTTTTAAAATTT+TGG | - | chr1_2:18387216-18387235 | None:intergenic | 15.0% |
| !! | TACGAATATAATAATTTCAT+TGG | + | chr1_2:18387822-18387841 | Msa0060610:intron | 15.0% |
| !!! | CTTTTTTTTCTTTCTTTTAA+TGG | - | chr1_2:18388113-18388132 | None:intergenic | 15.0% |
| !!! | AAAAGCTTTATTGTAAATAA+TGG | + | chr1_2:18388128-18388147 | Msa0060610:intron | 15.0% |
| !!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1_2:18388184-18388203 | None:intergenic | 15.0% |
| !! | TACAAATAATATTAACAAAG+AGG | - | chr1_2:18386868-18386887 | None:intergenic | 15.0% |
| !!! | TTCAAAGAGTTTTAAAATTT+TGG | - | chr1_2:18387216-18387235 | None:intergenic | 15.0% |
| !! | TACGAATATAATAATTTCAT+TGG | + | chr1_2:18387822-18387841 | Msa0060610:intron | 15.0% |
| !!! | CTTTTTTTTCTTTCTTTTAA+TGG | - | chr1_2:18388113-18388132 | None:intergenic | 15.0% |
| !!! | AAAAGCTTTATTGTAAATAA+TGG | + | chr1_2:18388128-18388147 | Msa0060610:intron | 15.0% |
| !!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1_2:18388184-18388203 | None:intergenic | 15.0% |
| !! | TTGAACATTATGTTAACATT+CGG | + | chr1_2:18387263-18387282 | Msa0060610:intron | 20.0% |
| !!! | TTTGAAACTTTGCAATTAAT+AGG | + | chr1_2:18387303-18387322 | Msa0060610:intron | 20.0% |
| !!! | TCCTGGTATAATTTTTTTTA+GGG | + | chr1_2:18387404-18387423 | Msa0060610:intron | 20.0% |
| !! | TCATTTGACAATATATAATG+AGG | - | chr1_2:18387676-18387695 | None:intergenic | 20.0% |
| !! | TATAATAATTTCATTGGACT+TGG | + | chr1_2:18387828-18387847 | Msa0060610:intron | 20.0% |
| !!! | ATGCCTAAAACAATTTTATA+GGG | + | chr1_2:18387851-18387870 | Msa0060610:intron | 20.0% |
| !!! | TAACCCTATAAAATTGTTTT+AGG | - | chr1_2:18387857-18387876 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTGCATTTATTA+TGG | - | chr1_2:18387984-18388003 | None:intergenic | 20.0% |
| !! | AATAAATGCAACAAAATACT+AGG | + | chr1_2:18387985-18388004 | Msa0060610:intron | 20.0% |
| !!! | GCTAATAAAAACTTTGTTTT+AGG | - | chr1_2:18388155-18388174 | None:intergenic | 20.0% |
| !!! | TTGCAAGAGTTTTTAATAAA+TGG | - | chr1_2:18388224-18388243 | None:intergenic | 20.0% |
| !!! | TCTGAGAAGTTATTTTTAAA+AGG | + | chr1_2:18388309-18388328 | Msa0060610:intron | 20.0% |
| !!! | TTTACTTTTATGAGAATTTG+TGG | + | chr1_2:18388362-18388381 | Msa0060610:intron | 20.0% |
| !!! | CTGATTTCAAATGTAATTTT+TGG | - | chr1_2:18388512-18388531 | None:intergenic | 20.0% |
| !! | GAATTACTCTTGAATAAAAA+TGG | - | chr1_2:18388565-18388584 | None:intergenic | 20.0% |
| !! | TACTTTGAATATCATACAAA+TGG | + | chr1_2:18388672-18388691 | Msa0060610:intron | 20.0% |
| !!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1_2:18388790-18388809 | None:intergenic | 20.0% |
| !! | TTGAACATTATGTTAACATT+CGG | + | chr1_2:18387263-18387282 | Msa0060610:intron | 20.0% |
| !!! | TTTGAAACTTTGCAATTAAT+AGG | + | chr1_2:18387303-18387322 | Msa0060610:intron | 20.0% |
| !!! | TCCTGGTATAATTTTTTTTA+GGG | + | chr1_2:18387404-18387423 | Msa0060610:intron | 20.0% |
| !! | TCATTTGACAATATATAATG+AGG | - | chr1_2:18387676-18387695 | None:intergenic | 20.0% |
| !! | TATAATAATTTCATTGGACT+TGG | + | chr1_2:18387828-18387847 | Msa0060610:intron | 20.0% |
| !!! | ATGCCTAAAACAATTTTATA+GGG | + | chr1_2:18387851-18387870 | Msa0060610:intron | 20.0% |
| !!! | TAACCCTATAAAATTGTTTT+AGG | - | chr1_2:18387857-18387876 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTGCATTTATTA+TGG | - | chr1_2:18387984-18388003 | None:intergenic | 20.0% |
| !! | AATAAATGCAACAAAATACT+AGG | + | chr1_2:18387985-18388004 | Msa0060610:intron | 20.0% |
| !!! | GCTAATAAAAACTTTGTTTT+AGG | - | chr1_2:18388155-18388174 | None:intergenic | 20.0% |
| !!! | TTGCAAGAGTTTTTAATAAA+TGG | - | chr1_2:18388224-18388243 | None:intergenic | 20.0% |
| !!! | TCTGAGAAGTTATTTTTAAA+AGG | + | chr1_2:18388309-18388328 | Msa0060610:intron | 20.0% |
| !!! | TTTACTTTTATGAGAATTTG+TGG | + | chr1_2:18388362-18388381 | Msa0060610:intron | 20.0% |
| !!! | CTGATTTCAAATGTAATTTT+TGG | - | chr1_2:18388512-18388531 | None:intergenic | 20.0% |
| !! | GAATTACTCTTGAATAAAAA+TGG | - | chr1_2:18388565-18388584 | None:intergenic | 20.0% |
| !! | TACTTTGAATATCATACAAA+TGG | + | chr1_2:18388672-18388691 | Msa0060610:intron | 20.0% |
| !!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1_2:18388790-18388809 | None:intergenic | 20.0% |
| ! | TTGAAAAAGGAGAGAAAAAA+TGG | + | chr1_2:18386721-18386740 | Msa0060610:exon | 25.0% |
| ! | TGAAAAAGGAGAGAAAAAAT+GGG | + | chr1_2:18386722-18386741 | Msa0060610:exon | 25.0% |
| ! | AAGAGGAATGAACAAAATTT+GGG | - | chr1_2:18386851-18386870 | None:intergenic | 25.0% |
| ! | AAAGAGGAATGAACAAAATT+TGG | - | chr1_2:18386852-18386871 | None:intergenic | 25.0% |
| ! | ATTAAAGACTTCAAACTTAG+TGG | + | chr1_2:18387062-18387081 | Msa0060610:intron | 25.0% |
| !!! | TGGTTTTTTCTTAACGTAAA+TGG | + | chr1_2:18387082-18387101 | Msa0060610:intron | 25.0% |
| !!! | GTCCTGGTATAATTTTTTTT+AGG | + | chr1_2:18387403-18387422 | Msa0060610:intron | 25.0% |
| ! | TCCCTAAAAAAAATTATACC+AGG | - | chr1_2:18387408-18387427 | None:intergenic | 25.0% |
| ! | TAAAGTTCTTAAAAATGCTC+CGG | - | chr1_2:18387448-18387467 | None:intergenic | 25.0% |
| ! | CTTCAAAAACTGCAAATTTA+AGG | - | chr1_2:18387635-18387654 | None:intergenic | 25.0% |
| !! | GATGCCTAAAACAATTTTAT+AGG | + | chr1_2:18387850-18387869 | Msa0060610:intron | 25.0% |
| ! | AATGGAATCTAATCCATATT+TGG | + | chr1_2:18388690-18388709 | Msa0060610:intron | 25.0% |
| ! | TTAAAGAAAATACAGAACAC+TGG | + | chr1_2:18388800-18388819 | Msa0060610:CDS | 25.0% |
| ! | TTGAAAAAGGAGAGAAAAAA+TGG | + | chr1_2:18386721-18386740 | Msa0060610:exon | 25.0% |
| ! | TGAAAAAGGAGAGAAAAAAT+GGG | + | chr1_2:18386722-18386741 | Msa0060610:exon | 25.0% |
| ! | AAGAGGAATGAACAAAATTT+GGG | - | chr1_2:18386851-18386870 | None:intergenic | 25.0% |
| ! | AAAGAGGAATGAACAAAATT+TGG | - | chr1_2:18386852-18386871 | None:intergenic | 25.0% |
| ! | ATTAAAGACTTCAAACTTAG+TGG | + | chr1_2:18387062-18387081 | Msa0060610:intron | 25.0% |
| !!! | TGGTTTTTTCTTAACGTAAA+TGG | + | chr1_2:18387082-18387101 | Msa0060610:intron | 25.0% |
| !!! | GTCCTGGTATAATTTTTTTT+AGG | + | chr1_2:18387403-18387422 | Msa0060610:intron | 25.0% |
| ! | TCCCTAAAAAAAATTATACC+AGG | - | chr1_2:18387408-18387427 | None:intergenic | 25.0% |
| ! | TAAAGTTCTTAAAAATGCTC+CGG | - | chr1_2:18387448-18387467 | None:intergenic | 25.0% |
| ! | CTTCAAAAACTGCAAATTTA+AGG | - | chr1_2:18387635-18387654 | None:intergenic | 25.0% |
| !! | GATGCCTAAAACAATTTTAT+AGG | + | chr1_2:18387850-18387869 | Msa0060610:intron | 25.0% |
| ! | AATGGAATCTAATCCATATT+TGG | + | chr1_2:18388690-18388709 | Msa0060610:intron | 25.0% |
| ! | TTAAAGAAAATACAGAACAC+TGG | + | chr1_2:18388800-18388819 | Msa0060610:CDS | 25.0% |
| ! | TCTGTTTCTTTGCTTGAAAA+AGG | + | chr1_2:18386708-18386727 | Msa0060610:five_prime_UTR | 30.0% |
| !!! | TTGCGTTTTTTTTCAGTTGA+TGG | - | chr1_2:18386785-18386804 | None:intergenic | 30.0% |
| TTGTATATTTCTCTTGCAGA+CGG | + | chr1_2:18386883-18386902 | Msa0060610:intron | 30.0% | |
| ! | AATTCTGTTGCTTACATGAA+AGG | + | chr1_2:18386956-18386975 | Msa0060610:CDS | 30.0% |
| CTATATCAATCGTAATTGGT+AGG | - | chr1_2:18387239-18387258 | None:intergenic | 30.0% | |
| CCATCTATATCAATCGTAAT+TGG | - | chr1_2:18387243-18387262 | None:intergenic | 30.0% | |
| CCAATTACGATTGATATAGA+TGG | + | chr1_2:18387240-18387259 | Msa0060610:intron | 30.0% | |
| CAAAAACTGCAAATTTAAGG+AGG | - | chr1_2:18387632-18387651 | None:intergenic | 30.0% | |
| !! | TTTGCAGTTTTTGAAGATTG+AGG | + | chr1_2:18387639-18387658 | Msa0060610:intron | 30.0% |
| AATGCAAACACTAAATGCAA+TGG | - | chr1_2:18387706-18387725 | None:intergenic | 30.0% | |
| ! | AAAATGACATAATTTGCGAG+AGG | + | chr1_2:18387737-18387756 | Msa0060610:intron | 30.0% |
| !! | CAGTATGAAAAGCATTAATG+TGG | - | chr1_2:18387777-18387796 | None:intergenic | 30.0% |
| ATGCTAATGTTAGGTGTATT+TGG | - | chr1_2:18387800-18387819 | None:intergenic | 30.0% | |
| AAATACACCTAACATTAGCA+TGG | + | chr1_2:18387799-18387818 | Msa0060610:intron | 30.0% | |
| ATAAGATGTCTCACAAGAAT+AGG | + | chr1_2:18387897-18387916 | Msa0060610:intron | 30.0% | |
| ! | CTTTTAATGGCAAAGAACAT+TGG | - | chr1_2:18388100-18388119 | None:intergenic | 30.0% |
| ACCAAGTTGTATGGAATATA+TGG | - | chr1_2:18388845-18388864 | None:intergenic | 30.0% | |
| ATATATTCCATACAACTTGG+TGG | + | chr1_2:18388844-18388863 | Msa0060610:CDS | 30.0% | |
| TCATATGCTTGTGATACATA+AGG | - | chr1_2:18388875-18388894 | None:intergenic | 30.0% | |
| ! | GTTTTCATCACTAAACATGT+TGG | - | chr1_2:18388975-18388994 | None:intergenic | 30.0% |
| ACATTATGGAACATGCATTA+GGG | - | chr1_2:18388997-18389016 | None:intergenic | 30.0% | |
| TACATTATGGAACATGCATT+AGG | - | chr1_2:18388998-18389017 | None:intergenic | 30.0% | |
| ! | TCTGTTTCTTTGCTTGAAAA+AGG | + | chr1_2:18386708-18386727 | Msa0060610:five_prime_UTR | 30.0% |
| !!! | TTGCGTTTTTTTTCAGTTGA+TGG | - | chr1_2:18386785-18386804 | None:intergenic | 30.0% |
| TTGTATATTTCTCTTGCAGA+CGG | + | chr1_2:18386883-18386902 | Msa0060610:intron | 30.0% | |
| ! | AATTCTGTTGCTTACATGAA+AGG | + | chr1_2:18386956-18386975 | Msa0060610:CDS | 30.0% |
| CTATATCAATCGTAATTGGT+AGG | - | chr1_2:18387239-18387258 | None:intergenic | 30.0% | |
| CCATCTATATCAATCGTAAT+TGG | - | chr1_2:18387243-18387262 | None:intergenic | 30.0% | |
| CCAATTACGATTGATATAGA+TGG | + | chr1_2:18387240-18387259 | Msa0060610:intron | 30.0% | |
| CAAAAACTGCAAATTTAAGG+AGG | - | chr1_2:18387632-18387651 | None:intergenic | 30.0% | |
| !! | TTTGCAGTTTTTGAAGATTG+AGG | + | chr1_2:18387639-18387658 | Msa0060610:intron | 30.0% |
| AATGCAAACACTAAATGCAA+TGG | - | chr1_2:18387706-18387725 | None:intergenic | 30.0% | |
| ! | AAAATGACATAATTTGCGAG+AGG | + | chr1_2:18387737-18387756 | Msa0060610:intron | 30.0% |
| !! | CAGTATGAAAAGCATTAATG+TGG | - | chr1_2:18387777-18387796 | None:intergenic | 30.0% |
| ATGCTAATGTTAGGTGTATT+TGG | - | chr1_2:18387800-18387819 | None:intergenic | 30.0% | |
| AAATACACCTAACATTAGCA+TGG | + | chr1_2:18387799-18387818 | Msa0060610:intron | 30.0% | |
| ATAAGATGTCTCACAAGAAT+AGG | + | chr1_2:18387897-18387916 | Msa0060610:intron | 30.0% | |
| ! | CTTTTAATGGCAAAGAACAT+TGG | - | chr1_2:18388100-18388119 | None:intergenic | 30.0% |
| ACCAAGTTGTATGGAATATA+TGG | - | chr1_2:18388845-18388864 | None:intergenic | 30.0% | |
| ATATATTCCATACAACTTGG+TGG | + | chr1_2:18388844-18388863 | Msa0060610:CDS | 30.0% | |
| TCATATGCTTGTGATACATA+AGG | - | chr1_2:18388875-18388894 | None:intergenic | 30.0% | |
| ! | GTTTTCATCACTAAACATGT+TGG | - | chr1_2:18388975-18388994 | None:intergenic | 30.0% |
| ACATTATGGAACATGCATTA+GGG | - | chr1_2:18388997-18389016 | None:intergenic | 30.0% | |
| TACATTATGGAACATGCATT+AGG | - | chr1_2:18388998-18389017 | None:intergenic | 30.0% | |
| AGAGTAAGACTAAGAACTGA+TGG | - | chr1_2:18386822-18386841 | None:intergenic | 35.0% | |
| GGAATGAACAAAATTTGGGT+AGG | - | chr1_2:18386847-18386866 | None:intergenic | 35.0% | |
| GGTTGAAATCAAGGTGAAAA+TGG | + | chr1_2:18386904-18386923 | Msa0060610:CDS | 35.0% | |
| ATGGCTGTGAAAGAAAAGTT+AGG | + | chr1_2:18386933-18386952 | Msa0060610:CDS | 35.0% | |
| TGTTAACATTCGGTATGACT+TGG | + | chr1_2:18387273-18387292 | Msa0060610:intron | 35.0% | |
| ! | TTTTTGTTAACGAGTGCTCT+CGG | - | chr1_2:18387574-18387593 | None:intergenic | 35.0% |
| ATTCGTACCATGCTAATGTT+AGG | - | chr1_2:18387809-18387828 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1_2:18387959-18387978 | None:intergenic | 35.0% |
| TAGCTACGTGGAAAAAAGAA+AGG | + | chr1_2:18388021-18388040 | Msa0060610:intron | 35.0% | |
| AGCTACGTGGAAAAAAGAAA+GGG | + | chr1_2:18388022-18388041 | Msa0060610:intron | 35.0% | |
| TGAGAATTTGTGGAGAAACT+TGG | + | chr1_2:18388372-18388391 | Msa0060610:intron | 35.0% | |
| CAAAGCAAAGTAACTGTTAG+TGG | + | chr1_2:18388755-18388774 | Msa0060610:CDS | 35.0% | |
| GCCATATATTCCATACAACT+TGG | + | chr1_2:18388841-18388860 | Msa0060610:CDS | 35.0% | |
| GTTTCTCATCCATTGCATTA+GGG | - | chr1_2:18388949-18388968 | None:intergenic | 35.0% | |
| AGTTTCTCATCCATTGCATT+AGG | - | chr1_2:18388950-18388969 | None:intergenic | 35.0% | |
| AGAGTAAGACTAAGAACTGA+TGG | - | chr1_2:18386822-18386841 | None:intergenic | 35.0% | |
| GGAATGAACAAAATTTGGGT+AGG | - | chr1_2:18386847-18386866 | None:intergenic | 35.0% | |
| GGTTGAAATCAAGGTGAAAA+TGG | + | chr1_2:18386904-18386923 | Msa0060610:CDS | 35.0% | |
| ATGGCTGTGAAAGAAAAGTT+AGG | + | chr1_2:18386933-18386952 | Msa0060610:CDS | 35.0% | |
| TGTTAACATTCGGTATGACT+TGG | + | chr1_2:18387273-18387292 | Msa0060610:intron | 35.0% | |
| ! | TTTTTGTTAACGAGTGCTCT+CGG | - | chr1_2:18387574-18387593 | None:intergenic | 35.0% |
| ATTCGTACCATGCTAATGTT+AGG | - | chr1_2:18387809-18387828 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1_2:18387959-18387978 | None:intergenic | 35.0% |
| TAGCTACGTGGAAAAAAGAA+AGG | + | chr1_2:18388021-18388040 | Msa0060610:intron | 35.0% | |
| AGCTACGTGGAAAAAAGAAA+GGG | + | chr1_2:18388022-18388041 | Msa0060610:intron | 35.0% | |
| TGAGAATTTGTGGAGAAACT+TGG | + | chr1_2:18388372-18388391 | Msa0060610:intron | 35.0% | |
| CAAAGCAAAGTAACTGTTAG+TGG | + | chr1_2:18388755-18388774 | Msa0060610:CDS | 35.0% | |
| GCCATATATTCCATACAACT+TGG | + | chr1_2:18388841-18388860 | Msa0060610:CDS | 35.0% | |
| GTTTCTCATCCATTGCATTA+GGG | - | chr1_2:18388949-18388968 | None:intergenic | 35.0% | |
| AGTTTCTCATCCATTGCATT+AGG | - | chr1_2:18388950-18388969 | None:intergenic | 35.0% | |
| AAAAAAACGCAAGCCAATGC+AGG | + | chr1_2:18386793-18386812 | Msa0060610:CDS | 40.0% | |
| !! | AAGGTGAAAATGGACTGTGA+TGG | + | chr1_2:18386914-18386933 | Msa0060610:CDS | 40.0% |
| GAGAACAAGCAATTTCGTTG+TGG | - | chr1_2:18387362-18387381 | None:intergenic | 40.0% | |
| GAAACGTTAATGAGTGCTTC+CGG | + | chr1_2:18387426-18387445 | Msa0060610:intron | 40.0% | |
| ! | TTTTGTTAACGAGTGCTCTC+GGG | - | chr1_2:18387573-18387592 | None:intergenic | 40.0% |
| ! | ATGACATAATTTGCGAGAGG+TGG | + | chr1_2:18387740-18387759 | Msa0060610:intron | 40.0% |
| TCTTGAATGCCAATCACTCA+AGG | + | chr1_2:18387947-18387966 | Msa0060610:intron | 40.0% | |
| CCACGTAGCTAAGTAAGTAA+AGG | - | chr1_2:18388012-18388031 | None:intergenic | 40.0% | |
| CCTTTACTTACTTAGCTACG+TGG | + | chr1_2:18388009-18388028 | Msa0060610:intron | 40.0% | |
| CTGCATGTATGGTCCAAATA+TGG | - | chr1_2:18388706-18388725 | None:intergenic | 40.0% | |
| CATATTTGGACCATACATGC+AGG | + | chr1_2:18388704-18388723 | Msa0060610:intron | 40.0% | |
| ! | CTGGAAAAAGAGCAGAGTTT+TGG | + | chr1_2:18388819-18388838 | Msa0060610:CDS | 40.0% |
| ! | GAGTTTTTCACATAACCAGC+TGG | - | chr1_2:18388908-18388927 | None:intergenic | 40.0% |
| CATTGCATTAGGGCTAGATA+GGG | - | chr1_2:18388939-18388958 | None:intergenic | 40.0% | |
| AAAAAAACGCAAGCCAATGC+AGG | + | chr1_2:18386793-18386812 | Msa0060610:CDS | 40.0% | |
| !! | AAGGTGAAAATGGACTGTGA+TGG | + | chr1_2:18386914-18386933 | Msa0060610:CDS | 40.0% |
| GAGAACAAGCAATTTCGTTG+TGG | - | chr1_2:18387362-18387381 | None:intergenic | 40.0% | |
| GAAACGTTAATGAGTGCTTC+CGG | + | chr1_2:18387426-18387445 | Msa0060610:intron | 40.0% | |
| ! | TTTTGTTAACGAGTGCTCTC+GGG | - | chr1_2:18387573-18387592 | None:intergenic | 40.0% |
| ! | ATGACATAATTTGCGAGAGG+TGG | + | chr1_2:18387740-18387759 | Msa0060610:intron | 40.0% |
| TCTTGAATGCCAATCACTCA+AGG | + | chr1_2:18387947-18387966 | Msa0060610:intron | 40.0% | |
| CCACGTAGCTAAGTAAGTAA+AGG | - | chr1_2:18388012-18388031 | None:intergenic | 40.0% | |
| CCTTTACTTACTTAGCTACG+TGG | + | chr1_2:18388009-18388028 | Msa0060610:intron | 40.0% | |
| CTGCATGTATGGTCCAAATA+TGG | - | chr1_2:18388706-18388725 | None:intergenic | 40.0% | |
| CATATTTGGACCATACATGC+AGG | + | chr1_2:18388704-18388723 | Msa0060610:intron | 40.0% | |
| ! | CTGGAAAAAGAGCAGAGTTT+TGG | + | chr1_2:18388819-18388838 | Msa0060610:CDS | 40.0% |
| ! | GAGTTTTTCACATAACCAGC+TGG | - | chr1_2:18388908-18388927 | None:intergenic | 40.0% |
| CATTGCATTAGGGCTAGATA+GGG | - | chr1_2:18388939-18388958 | None:intergenic | 40.0% | |
| GACAGAGAGAAAGGGGAAAA+GGG | - | chr1_2:18386667-18386686 | None:intergenic | 45.0% | |
| TGACAGAGAGAAAGGGGAAA+AGG | - | chr1_2:18386668-18386687 | None:intergenic | 45.0% | |
| TGTGTGTGACAGAGAGAAAG+GGG | - | chr1_2:18386674-18386693 | None:intergenic | 45.0% | |
| GTGTGTGTGACAGAGAGAAA+GGG | - | chr1_2:18386675-18386694 | None:intergenic | 45.0% | |
| TGTGTGTGTGACAGAGAGAA+AGG | - | chr1_2:18386676-18386695 | None:intergenic | 45.0% | |
| GAACTGATGGTAACCTGCAT+TGG | - | chr1_2:18386809-18386828 | None:intergenic | 45.0% | |
| CTTGCAGACGGTTGAAATCA+AGG | + | chr1_2:18386895-18386914 | Msa0060610:intron | 45.0% | |
| ! | TTGTTCTCTGTAGCCTTGCA+TGG | + | chr1_2:18387374-18387393 | Msa0060610:intron | 45.0% |
| TTTGTTAACGAGTGCTCTCG+GGG | - | chr1_2:18387572-18387591 | None:intergenic | 45.0% | |
| AATTTGCGAGAGGTGGAAAG+TGG | + | chr1_2:18387747-18387766 | Msa0060610:intron | 45.0% | |
| TTGCTTCACACCTGCATGTA+TGG | - | chr1_2:18388717-18388736 | None:intergenic | 45.0% | |
| GGATAAGCCACCAAGTTGTA+TGG | - | chr1_2:18388854-18388873 | None:intergenic | 45.0% | |
| !! | TATGACAAGAAAGCACCAGC+TGG | + | chr1_2:18388890-18388909 | Msa0060610:CDS | 45.0% |
| CCATTGCATTAGGGCTAGAT+AGG | - | chr1_2:18388940-18388959 | None:intergenic | 45.0% | |
| CCTATCTAGCCCTAATGCAA+TGG | + | chr1_2:18388937-18388956 | Msa0060610:CDS | 45.0% | |
| GACAGAGAGAAAGGGGAAAA+GGG | - | chr1_2:18386667-18386686 | None:intergenic | 45.0% | |
| TGACAGAGAGAAAGGGGAAA+AGG | - | chr1_2:18386668-18386687 | None:intergenic | 45.0% | |
| TGTGTGTGACAGAGAGAAAG+GGG | - | chr1_2:18386674-18386693 | None:intergenic | 45.0% | |
| GTGTGTGTGACAGAGAGAAA+GGG | - | chr1_2:18386675-18386694 | None:intergenic | 45.0% | |
| TGTGTGTGTGACAGAGAGAA+AGG | - | chr1_2:18386676-18386695 | None:intergenic | 45.0% | |
| GAACTGATGGTAACCTGCAT+TGG | - | chr1_2:18386809-18386828 | None:intergenic | 45.0% | |
| CTTGCAGACGGTTGAAATCA+AGG | + | chr1_2:18386895-18386914 | Msa0060610:intron | 45.0% | |
| ! | TTGTTCTCTGTAGCCTTGCA+TGG | + | chr1_2:18387374-18387393 | Msa0060610:intron | 45.0% |
| TTTGTTAACGAGTGCTCTCG+GGG | - | chr1_2:18387572-18387591 | None:intergenic | 45.0% | |
| AATTTGCGAGAGGTGGAAAG+TGG | + | chr1_2:18387747-18387766 | Msa0060610:intron | 45.0% | |
| TTGCTTCACACCTGCATGTA+TGG | - | chr1_2:18388717-18388736 | None:intergenic | 45.0% | |
| GGATAAGCCACCAAGTTGTA+TGG | - | chr1_2:18388854-18388873 | None:intergenic | 45.0% | |
| !! | TATGACAAGAAAGCACCAGC+TGG | + | chr1_2:18388890-18388909 | Msa0060610:CDS | 45.0% |
| CCATTGCATTAGGGCTAGAT+AGG | - | chr1_2:18388940-18388959 | None:intergenic | 45.0% | |
| CCTATCTAGCCCTAATGCAA+TGG | + | chr1_2:18388937-18388956 | Msa0060610:CDS | 45.0% | |
| CCAGGACACATTACCATGCA+AGG | - | chr1_2:18387390-18387409 | None:intergenic | 50.0% | |
| ! | CCTTGCATGGTAATGTGTCC+TGG | + | chr1_2:18387387-18387406 | Msa0060610:intron | 50.0% |
| ACATGCAGGTGTGAAGCAAG+TGG | + | chr1_2:18388718-18388737 | Msa0060610:intron | 50.0% | |
| CCAGGACACATTACCATGCA+AGG | - | chr1_2:18387390-18387409 | None:intergenic | 50.0% | |
| ! | CCTTGCATGGTAATGTGTCC+TGG | + | chr1_2:18387387-18387406 | Msa0060610:intron | 50.0% |
| ACATGCAGGTGTGAAGCAAG+TGG | + | chr1_2:18388718-18388737 | Msa0060610:intron | 50.0% | |
| TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1_2:18388721-18388740 | Msa0060610:intron | 55.0% | |
| TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1_2:18388721-18388740 | Msa0060610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18386654 | 18389018 | 18386654 | ID=Msa0060610;Name=Msa0060610 |
| chr1_2 | mRNA | 18386654 | 18389018 | 18386654 | ID=Msa0060610-mRNA-1;Parent=Msa0060610;Name=Msa0060610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=86|1|0.66|1|1|1|3|0|147 |
| chr1_2 | exon | 18386654 | 18386814 | 18386654 | ID=Msa0060610-mRNA-1:exon:7130;Parent=Msa0060610-mRNA-1 |
| chr1_2 | exon | 18386902 | 18386977 | 18386902 | ID=Msa0060610-mRNA-1:exon:7131;Parent=Msa0060610-mRNA-1 |
| chr1_2 | exon | 18388726 | 18389018 | 18388726 | ID=Msa0060610-mRNA-1:exon:7132;Parent=Msa0060610-mRNA-1 |
| chr1_2 | five_prime_UTR | 18386654 | 18386739 | 18386654 | ID=Msa0060610-mRNA-1:five_prime_utr;Parent=Msa0060610-mRNA-1 |
| chr1_2 | CDS | 18386740 | 18386814 | 18386740 | ID=Msa0060610-mRNA-1:cds;Parent=Msa0060610-mRNA-1 |
| chr1_2 | CDS | 18386902 | 18386977 | 18386902 | ID=Msa0060610-mRNA-1:cds;Parent=Msa0060610-mRNA-1 |
| chr1_2 | CDS | 18388726 | 18389018 | 18388726 | ID=Msa0060610-mRNA-1:cds;Parent=Msa0060610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
