Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060620 | XP_013466501.1 | 85.049 | 408 | 18 | 3 | 1 | 366 | 1 | 407 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060620 | sp|P08452|Y1174_SYNP6 | 50.000 | 340 | 126 | 8 | 39 | 338 | 4 | 339 | 2.21e-98 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060620 | A0A072VFG1 | 85.049 | 408 | 18 | 3 | 1 | 366 | 1 | 407 | 0.0 | 677 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060620 | Msa0266010 | 0.838593 | 2.622584e-57 | -8.615850e-47 |
| Msa0060620 | Msa0282070 | 0.821494 | 3.919838e-53 | -8.615850e-47 |
| Msa0060620 | Msa0282090 | 0.804013 | 2.648585e-49 | -8.615850e-47 |
| Msa0060620 | Msa0303950 | 0.834155 | 3.530061e-56 | -8.615850e-47 |
| Msa0060620 | Msa0968010 | 0.813825 | 2.104265e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060620 | MtrunA17_Chr1g0160211 | 85.049 | 408 | 18 | 3 | 1 | 366 | 1 | 407 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 127 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGTCATACCCTATTT+TGG | 0.182730 | 1_2:-18406915 | None:intergenic |
| AGCTGCATGTCTCAAATTAT+TGG | 0.208256 | 1_2:+18409529 | Msa0060620:intron |
| TTATTTCTTCTAAGTGAAAA+TGG | 0.212698 | 1_2:-18409594 | None:intergenic |
| AAAGCAAGGTTAAGACAATT+TGG | 0.245457 | 1_2:+18409908 | Msa0060620:three_prime_UTR |
| TACAGCCTGTTCACCAAAAT+AGG | 0.266802 | 1_2:+18406902 | Msa0060620:CDS |
| TTTCTTTACATTACTTTGAT+AGG | 0.275262 | 1_2:-18405148 | None:intergenic |
| TCAAATTATTGGGAAGCTAT+TGG | 0.309504 | 1_2:+18409540 | Msa0060620:CDS |
| ACAGCTCTAATTAAAGAATC+AGG | 0.311078 | 1_2:-18407528 | None:intergenic |
| CTTCACTTCACAATCTCTTA+AGG | 0.325433 | 1_2:+18405262 | Msa0060620:CDS |
| TTGGTTATATTAACCATTGC+AGG | 0.326759 | 1_2:+18409740 | Msa0060620:three_prime_UTR |
| ATTTGGTTTCACACCTCATT+TGG | 0.331739 | 1_2:+18409925 | Msa0060620:three_prime_UTR |
| TTGTTGTGGTTGTTGAAGAA+TGG | 0.349548 | 1_2:-18405221 | None:intergenic |
| GCCGCTATTGGTGGGTTTGC+TGG | 0.357775 | 1_2:+18405419 | Msa0060620:CDS |
| AGCCATATGTATTTCTTAGA+AGG | 0.358464 | 1_2:+18409798 | Msa0060620:three_prime_UTR |
| AATTTCAGTCTATACTGAAT+TGG | 0.362400 | 1_2:+18409881 | Msa0060620:three_prime_UTR |
| TATATTGTGTTATAGAGTTT+AGG | 0.365799 | 1_2:+18409769 | Msa0060620:three_prime_UTR |
| GAAGAGAGAGCACGAGCAAC+AGG | 0.369231 | 1_2:-18405452 | None:intergenic |
| AGAGATAGGCTCAAGGGAAT+TGG | 0.369687 | 1_2:-18407880 | None:intergenic |
| GTAATGTAAAGAAAAGAAAA+TGG | 0.379093 | 1_2:+18405157 | Msa0060620:exon |
| CAGTAAAGCTCCACAATACT+TGG | 0.386440 | 1_2:+18408532 | Msa0060620:CDS |
| CTGATTTGGGACTTAGAGAT+AGG | 0.387375 | 1_2:-18407894 | None:intergenic |
| TTAACGCAGCAATGCTATAT+TGG | 0.388018 | 1_2:+18406812 | Msa0060620:CDS |
| ACATCATCAGTATCATCATC+TGG | 0.389499 | 1_2:-18407606 | None:intergenic |
| GTAGAGAAAGAAGGGGTTAT+CGG | 0.392310 | 1_2:-18405197 | None:intergenic |
| GTCCCCTCCACAAGCATCCC+TGG | 0.394937 | 1_2:-18408621 | None:intergenic |
| AATGGAAAAGGGTTGCATAT+TGG | 0.400790 | 1_2:+18408571 | Msa0060620:CDS |
| CCTAATGCATTATATGTTGA+AGG | 0.407076 | 1_2:+18406841 | Msa0060620:CDS |
| TGTTGTGGTTGTTGAAGAAT+GGG | 0.412053 | 1_2:-18405220 | None:intergenic |
| GGAACTCCTTCACCACTAGA+TGG | 0.413837 | 1_2:-18407825 | None:intergenic |
| ATGATAGTGCCGACTGGAAC+TGG | 0.418053 | 1_2:+18405395 | Msa0060620:CDS |
| CCTAAAACTGGCAAATCTAC+AGG | 0.418414 | 1_2:+18407492 | Msa0060620:CDS |
| AAGGGAATTGGAGCCATTGC+AGG | 0.420564 | 1_2:-18407868 | None:intergenic |
| ACTGGAACTGGAGCCGCTAT+TGG | 0.423707 | 1_2:+18405407 | Msa0060620:CDS |
| CTGTGCAGACCTTAGTGAAT+AGG | 0.425303 | 1_2:+18407547 | Msa0060620:CDS |
| GCACTCTGAATCAATGGAAA+AGG | 0.426223 | 1_2:+18408559 | Msa0060620:CDS |
| GAAATAAAATTCGTAACATT+GGG | 0.428084 | 1_2:+18409610 | Msa0060620:CDS |
| GGGCATGTGCACAAGGAATT+CGG | 0.431905 | 1_2:-18407846 | None:intergenic |
| AAGTGGGTTGATCCTAAAAC+TGG | 0.431933 | 1_2:+18407480 | Msa0060620:CDS |
| GCTGCATGTCTCAAATTATT+GGG | 0.436132 | 1_2:+18409530 | Msa0060620:intron |
| AGGGATGCTTGTGGAGGGGA+CGG | 0.437088 | 1_2:+18408623 | Msa0060620:CDS |
| AGAAATAAAATTCGTAACAT+TGG | 0.437314 | 1_2:+18409609 | Msa0060620:CDS |
| CTGATGATGTTGATGAATAT+CGG | 0.460169 | 1_2:+18407619 | Msa0060620:CDS |
| ACAGATTTGCAGAAGGGTCA+TGG | 0.468323 | 1_2:+18406875 | Msa0060620:CDS |
| TTCCCAGGGATGCTTGTGGA+GGG | 0.471362 | 1_2:+18408618 | Msa0060620:CDS |
| GTGACAGTATATTCTACAAC+AGG | 0.472274 | 1_2:-18407150 | None:intergenic |
| GGGATGCTTGTGGAGGGGAC+GGG | 0.474394 | 1_2:+18408624 | Msa0060620:CDS |
| GTAATAGCTGCTCACAAAGC+AGG | 0.476166 | 1_2:+18409564 | Msa0060620:CDS |
| GTGAATGCCATCGCTGTTGT+TGG | 0.477098 | 1_2:+18407576 | Msa0060620:CDS |
| ACAGCCTGTTCACCAAAATA+GGG | 0.477932 | 1_2:+18406903 | Msa0060620:CDS |
| TGGATTCTGTAGTCCTTCCC+AGG | 0.478829 | 1_2:+18408603 | Msa0060620:CDS |
| AGAATGGGGTAGAGAAAGAA+GGG | 0.480882 | 1_2:-18405205 | None:intergenic |
| CCTTCAACATATAATGCATT+AGG | 0.484777 | 1_2:-18406841 | None:intergenic |
| GTATTTGAGTGACCATTGGC+AGG | 0.490682 | 1_2:-18409648 | None:intergenic |
| AGTTCTTGATGCTGGTATAG+AGG | 0.490977 | 1_2:+18407068 | Msa0060620:CDS |
| GAGGGAAGCCCTTGCAGCAT+CGG | 0.495642 | 1_2:-18407121 | None:intergenic |
| TCTTGTATTTGAGTGACCAT+TGG | 0.498933 | 1_2:-18409652 | None:intergenic |
| ACATATAATGCATTAGGCAT+TGG | 0.499376 | 1_2:-18406835 | None:intergenic |
| GGAACTGGAGCCGCTATTGG+TGG | 0.500113 | 1_2:+18405410 | Msa0060620:CDS |
| CACTCTGAATCAATGGAAAA+GGG | 0.500456 | 1_2:+18408560 | Msa0060620:CDS |
| GGTGATGCACTCTGAATCAA+TGG | 0.500894 | 1_2:+18408553 | Msa0060620:CDS |
| AAGAATGGGGTAGAGAAAGA+AGG | 0.502658 | 1_2:-18405206 | None:intergenic |
| CAATATACTATTTCCTGCAA+TGG | 0.503204 | 1_2:-18409753 | None:intergenic |
| TGATGAATATCGGCAGGGAT+TGG | 0.504212 | 1_2:+18407629 | Msa0060620:CDS |
| CTCTATCTATGTTGTAACAC+AGG | 0.506363 | 1_2:+18409849 | Msa0060620:three_prime_UTR |
| TACCTTCTAAGAAATACATA+TGG | 0.506958 | 1_2:-18409800 | None:intergenic |
| GTTGGAATAGTTCTTGATGC+TGG | 0.507045 | 1_2:+18407060 | Msa0060620:CDS |
| TTACATTAGGGTGAGTGATA+AGG | 0.508155 | 1_2:-18405487 | None:intergenic |
| ACTGAATTGGTTTCAAAGCA+AGG | 0.509470 | 1_2:+18409894 | Msa0060620:three_prime_UTR |
| CTTCCCAGGGATGCTTGTGG+AGG | 0.509870 | 1_2:+18408617 | Msa0060620:CDS |
| TTGTGCACATGCCCCTGCAA+TGG | 0.511213 | 1_2:+18407855 | Msa0060620:CDS |
| GAAGGACGGTACTGAACATA+AGG | 0.513097 | 1_2:+18405110 | Msa0060620:five_prime_UTR |
| CAGATTTGCAGAAGGGTCAT+GGG | 0.525771 | 1_2:+18406876 | Msa0060620:CDS |
| TACAAGTAGCCGATGCTGCA+AGG | 0.528199 | 1_2:+18407112 | Msa0060620:CDS |
| CTTAAGAGATTGTGAAGTGA+AGG | 0.532483 | 1_2:-18405261 | None:intergenic |
| GATGCTGCAAGGGCTTCCCT+CGG | 0.535323 | 1_2:+18407123 | Msa0060620:CDS |
| TCCCAGGGATGCTTGTGGAG+GGG | 0.536283 | 1_2:+18408619 | Msa0060620:CDS |
| GTCCTTCCCAGGGATGCTTG+TGG | 0.540707 | 1_2:+18408614 | Msa0060620:CDS |
| TCCCCTCCACAAGCATCCCT+GGG | 0.542524 | 1_2:-18408620 | None:intergenic |
| CTCTTGACAGATTTGCAGAA+GGG | 0.543219 | 1_2:+18406869 | Msa0060620:CDS |
| CTGGTATAGAGGAAGAGCTT+CGG | 0.548267 | 1_2:+18407079 | Msa0060620:CDS |
| AGACCTACTGGCGGGAGTTG+AGG | 0.554528 | 1_2:+18407792 | Msa0060620:CDS |
| ATTAATAAAAGGTCCAAATG+AGG | 0.555635 | 1_2:-18409938 | None:intergenic |
| ATGAAACGGTTGGTTTGTTG+TGG | 0.564750 | 1_2:-18405235 | None:intergenic |
| CATCATCAGTATCATCATCT+GGG | 0.566233 | 1_2:-18407605 | None:intergenic |
| ACAAGTAGCCGATGCTGCAA+GGG | 0.568105 | 1_2:+18407113 | Msa0060620:CDS |
| GAGTGCATCACCAAGTATTG+TGG | 0.569897 | 1_2:-18408542 | None:intergenic |
| CTCCACAAGCATCCCTGGGA+AGG | 0.572336 | 1_2:-18408616 | None:intergenic |
| GAACTGGAGCCGCTATTGGT+GGG | 0.573340 | 1_2:+18405411 | Msa0060620:CDS |
| TATAAGCCATCTAGTGGTGA+AGG | 0.577042 | 1_2:+18407819 | Msa0060620:CDS |
| ACTTCATTTATGCCTGCCAA+TGG | 0.577218 | 1_2:+18409636 | Msa0060620:CDS |
| CAGCTCTAATTAAAGAATCA+GGG | 0.578118 | 1_2:-18407527 | None:intergenic |
| GTGAAGGAACATGAAACGGT+TGG | 0.578934 | 1_2:-18405245 | None:intergenic |
| CTAAAACTGGCAAATCTACA+GGG | 0.581494 | 1_2:+18407493 | Msa0060620:CDS |
| AGGGAATTGGAGCCATTGCA+GGG | 0.581967 | 1_2:-18407867 | None:intergenic |
| AAGATACTTGATACCTCAAG+TGG | 0.584669 | 1_2:-18407180 | None:intergenic |
| GCTCTTGACAGATTTGCAGA+AGG | 0.588709 | 1_2:+18406868 | Msa0060620:CDS |
| TGATGTTGATGAATATCGGC+AGG | 0.589319 | 1_2:+18407623 | Msa0060620:CDS |
| TGAAGTGAAGGAACATGAAA+CGG | 0.595940 | 1_2:-18405249 | None:intergenic |
| TAATAGCTGCTCACAAAGCA+GGG | 0.602386 | 1_2:+18409565 | Msa0060620:CDS |
| ATTGCAGGGGCATGTGCACA+AGG | 0.603340 | 1_2:-18407853 | None:intergenic |
| CAGCCTCAACTCCCGCCAGT+AGG | 0.603348 | 1_2:-18407795 | None:intergenic |
| GGATTCTGTAGTCCTTCCCA+GGG | 0.604243 | 1_2:+18408604 | Msa0060620:CDS |
| TGTCACAGACACTCCACTTG+AGG | 0.604509 | 1_2:+18407167 | Msa0060620:CDS |
| TTGCATATTGGCAAGTGATG+TGG | 0.609804 | 1_2:+18408583 | Msa0060620:CDS |
| TTCTACAACAGGCAATCCGA+GGG | 0.610250 | 1_2:-18407139 | None:intergenic |
| TATACAGGGAGTAGACCTAC+TGG | 0.612219 | 1_2:+18407780 | Msa0060620:intron |
| GGACTTAGAGATAGGCTCAA+GGG | 0.614747 | 1_2:-18407886 | None:intergenic |
| ACCAGCAAACCCACCAATAG+CGG | 0.615654 | 1_2:-18405420 | None:intergenic |
| GGGACTTAGAGATAGGCTCA+AGG | 0.618985 | 1_2:-18407887 | None:intergenic |
| ATTCTACAACAGGCAATCCG+AGG | 0.628425 | 1_2:-18407140 | None:intergenic |
| GGCTGTTATAAGCCATCTAG+TGG | 0.629360 | 1_2:+18407813 | Msa0060620:CDS |
| CTTTCATTACAGTACAGTGA+AGG | 0.634161 | 1_2:+18405092 | None:intergenic |
| GTTGTGGTTGTTGAAGAATG+GGG | 0.643585 | 1_2:-18405219 | None:intergenic |
| CATTACAGTACAGTGAAGGA+CGG | 0.644382 | 1_2:+18405096 | Msa0060620:five_prime_UTR |
| TCTATGTTGTAACACAGGGT+AGG | 0.647499 | 1_2:+18409854 | Msa0060620:three_prime_UTR |
| CAGGGAGTAGACCTACTGGC+GGG | 0.651585 | 1_2:+18407784 | Msa0060620:intron |
| GAAACGTCCAACAACAGCGA+TGG | 0.657732 | 1_2:-18407583 | None:intergenic |
| GGGAATTGGAGCCATTGCAG+GGG | 0.657844 | 1_2:-18407866 | None:intergenic |
| TCTATCTATGTTGTAACACA+GGG | 0.660554 | 1_2:+18409850 | Msa0060620:three_prime_UTR |
| AGTATTGTGGAGCTTTACTG+AGG | 0.661521 | 1_2:-18408529 | None:intergenic |
| TATCGGAAGATTGAGAGTGA+AGG | 0.663850 | 1_2:-18405180 | None:intergenic |
| ATAGCGGCTCCAGTTCCAGT+CGG | 0.668116 | 1_2:-18405404 | None:intergenic |
| GAATGGGGTAGAGAAAGAAG+GGG | 0.674497 | 1_2:-18405204 | None:intergenic |
| AGTGTGATGATAGTGCCGAC+TGG | 0.677986 | 1_2:+18405389 | Msa0060620:CDS |
| GATGTTGATGAATATCGGCA+GGG | 0.699845 | 1_2:+18407624 | Msa0060620:CDS |
| ACAGGGAGTAGACCTACTGG+CGG | 0.713149 | 1_2:+18407783 | Msa0060620:intron |
| AAACTGGCAAATCTACAGGG+AGG | 0.758367 | 1_2:+18407496 | Msa0060620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATACTATTAATTTGTTA+TGG | + | chr1_2:18405327-18405346 | Msa0060620:intron | 10.0% |
| !! | ATAAAATTGAATATTGAAAT+TGG | + | chr1_2:18406352-18406371 | Msa0060620:intron | 10.0% |
| !!! | TTTTTGTACATATATATAAA+GGG | - | chr1_2:18406409-18406428 | None:intergenic | 10.0% |
| !!! | TTTTTTGTACATATATATAA+AGG | - | chr1_2:18406410-18406429 | None:intergenic | 10.0% |
| !!! | TTTTGTATTATTCATTAATT+TGG | + | chr1_2:18407726-18407745 | Msa0060620:intron | 10.0% |
| !! | AAAAAAATCAATGATTTGAT+TGG | + | chr1_2:18406426-18406445 | Msa0060620:intron | 15.0% |
| !! | GATAAAATAGTTTAAATGAA+TGG | + | chr1_2:18406470-18406489 | Msa0060620:intron | 15.0% |
| !! | ATTCTACAACAATATATAAA+GGG | - | chr1_2:18406535-18406554 | None:intergenic | 15.0% |
| !! | AATTCTACAACAATATATAA+AGG | - | chr1_2:18406536-18406555 | None:intergenic | 15.0% |
| !!! | CTATTTTCGTAAATTATTAT+TGG | + | chr1_2:18408102-18408121 | Msa0060620:intron | 15.0% |
| !! | TTAAATTTCCATTCATTTAA+TGG | - | chr1_2:18408336-18408355 | None:intergenic | 15.0% |
| !! | CAAAAAATAAGGTATATTAA+TGG | + | chr1_2:18408669-18408688 | Msa0060620:intron | 15.0% |
| !! | CAAAATTAAAAAGAGATTAA+AGG | - | chr1_2:18409180-18409199 | None:intergenic | 15.0% |
| !!! | TTCTATTTTAATTTAACTCA+AGG | - | chr1_2:18409426-18409445 | None:intergenic | 15.0% |
| !! | ATTAAAATGAAACTCATTAT+TGG | + | chr1_2:18409484-18409503 | Msa0060620:intron | 15.0% |
| !! | TTTCTTTACATTACTTTGAT+AGG | - | chr1_2:18405151-18405170 | None:intergenic | 20.0% |
| !! | GTAATGTAAAGAAAAGAAAA+TGG | + | chr1_2:18405157-18405176 | Msa0060620:exon | 20.0% |
| !! | TGATAGATAACATTACATTA+GGG | - | chr1_2:18405502-18405521 | None:intergenic | 20.0% |
| !! | AGTAAATAGAAGCAATAAAT+TGG | - | chr1_2:18405540-18405559 | None:intergenic | 20.0% |
| !! | TTCTAAGTGAATATCTAATA+TGG | + | chr1_2:18405641-18405660 | Msa0060620:intron | 20.0% |
| !!! | AAGTATACATTTAAGTTTCT+TGG | + | chr1_2:18406765-18406784 | Msa0060620:intron | 20.0% |
| !!! | TCAAACAATTGTGAAATTTT+TGG | + | chr1_2:18407322-18407341 | Msa0060620:intron | 20.0% |
| !! | AAGTCAATTTGCATTATATA+CGG | - | chr1_2:18407440-18407459 | None:intergenic | 20.0% |
| !!! | GTAAATTATTATTGGTTTCT+AGG | + | chr1_2:18408110-18408129 | Msa0060620:intron | 20.0% |
| !! | AAAGATATAGAGAAAGAATA+AGG | - | chr1_2:18408267-18408286 | None:intergenic | 20.0% |
| !!! | TTTCTCTATATCTTTTATTG+AGG | + | chr1_2:18408272-18408291 | Msa0060620:intron | 20.0% |
| !! | AAAATAAGGTATATTAATGG+AGG | + | chr1_2:18408672-18408691 | Msa0060620:intron | 20.0% |
| !!! | ATAGATACAGTTTAATTTCT+AGG | - | chr1_2:18408759-18408778 | None:intergenic | 20.0% |
| !!! | TTATTTCTTCTAAGTGAAAA+TGG | - | chr1_2:18409597-18409616 | None:intergenic | 20.0% |
| !! | AGAAATAAAATTCGTAACAT+TGG | + | chr1_2:18409609-18409628 | Msa0060620:CDS | 20.0% |
| !! | GAAATAAAATTCGTAACATT+GGG | + | chr1_2:18409610-18409629 | Msa0060620:CDS | 20.0% |
| !! | TATATTGTGTTATAGAGTTT+AGG | + | chr1_2:18409769-18409788 | Msa0060620:three_prime_UTR | 20.0% |
| ! | GTGATAGATAACATTACATT+AGG | - | chr1_2:18405503-18405522 | None:intergenic | 25.0% |
| ! | AACACACACATATAATTCAT+GGG | - | chr1_2:18405684-18405703 | None:intergenic | 25.0% |
| ! | AAACACACACATATAATTCA+TGG | - | chr1_2:18405685-18405704 | None:intergenic | 25.0% |
| ! | ATGAATTATATGTGTGTGTT+TGG | + | chr1_2:18405684-18405703 | Msa0060620:intron | 25.0% |
| ! | ATTTAAACCAATAAGAGAGT+GGG | - | chr1_2:18405797-18405816 | None:intergenic | 25.0% |
| !!! | CTTATTGGTTTAAATCATTG+CGG | + | chr1_2:18405802-18405821 | Msa0060620:intron | 25.0% |
| !!! | TTATTGGTTTAAATCATTGC+GGG | + | chr1_2:18405803-18405822 | Msa0060620:intron | 25.0% |
| !!! | TTCTTTTTTCCTCATTGATT+GGG | + | chr1_2:18406311-18406330 | Msa0060620:intron | 25.0% |
| !! | TGATAAAGTTCGTCTTTTAT+TGG | + | chr1_2:18406584-18406603 | Msa0060620:intron | 25.0% |
| ! | CAGGAACATTTAGTAATATT+GGG | - | chr1_2:18406697-18406716 | None:intergenic | 25.0% |
| ! | CTCTTAATTTCATCAGTATA+TGG | + | chr1_2:18406719-18406738 | Msa0060620:intron | 25.0% |
| !! | TTTTATTGTGTAAATCAGGT+TGG | + | chr1_2:18407042-18407061 | Msa0060620:intron | 25.0% |
| ! | AGCATAGATATGTCTAATAA+GGG | - | chr1_2:18407260-18407279 | None:intergenic | 25.0% |
| ! | TAGCATAGATATGTCTAATA+AGG | - | chr1_2:18407261-18407280 | None:intergenic | 25.0% |
| ! | GCTAAAATCTTCATACAATT+TGG | + | chr1_2:18407277-18407296 | Msa0060620:intron | 25.0% |
| ! | CATATACGTATCAAAATTGT+AGG | + | chr1_2:18407381-18407400 | Msa0060620:intron | 25.0% |
| !!! | ATTGACTTGCAATTTTTTTC+AGG | + | chr1_2:18407452-18407471 | Msa0060620:intron | 25.0% |
| ! | ATTTCGAAATTTATAGTCAG+AGG | + | chr1_2:18407688-18407707 | Msa0060620:intron | 25.0% |
| ! | TTCAATGCTTCTTAGAAATA+TGG | + | chr1_2:18408134-18408153 | Msa0060620:intron | 25.0% |
| ! | GAAAGAATAAGGAAAACTTA+CGG | - | chr1_2:18408256-18408275 | None:intergenic | 25.0% |
| ! | GTTCAAATAGCATATTCTAA+AGG | - | chr1_2:18408361-18408380 | None:intergenic | 25.0% |
| ! | TATCAATCTAGTTGAATTTC+TGG | - | chr1_2:18408717-18408736 | None:intergenic | 25.0% |
| ! | ATTGTCAAACATTGAAAAGT+TGG | - | chr1_2:18408786-18408805 | None:intergenic | 25.0% |
| ! | AACATAACAAAGTGACATTA+TGG | - | chr1_2:18408978-18408997 | None:intergenic | 25.0% |
| !!! | TTCTACAAAACTGATTTGTA+AGG | - | chr1_2:18409082-18409101 | None:intergenic | 25.0% |
| !!! | TTTTTGTCAATTGACTTCAT+AGG | - | chr1_2:18409259-18409278 | None:intergenic | 25.0% |
| !!! | TTTTCCCTTATTTTCTTCAT+TGG | - | chr1_2:18409304-18409323 | None:intergenic | 25.0% |
| ! | AAGAAAATAAGGGAAAAGAT+AGG | + | chr1_2:18409307-18409326 | Msa0060620:intron | 25.0% |
| !! | AACTCAAGGATTTAAAGTAT+CGG | - | chr1_2:18409412-18409431 | None:intergenic | 25.0% |
| !!! | GAGTTTCATTTTAATTGCAT+TGG | - | chr1_2:18409479-18409498 | None:intergenic | 25.0% |
| !! | TACCTTCTAAGAAATACATA+TGG | - | chr1_2:18409803-18409822 | None:intergenic | 25.0% |
| ! | AATTTCAGTCTATACTGAAT+TGG | + | chr1_2:18409881-18409900 | Msa0060620:three_prime_UTR | 25.0% |
| !!! | TGTTATGGTTGTTGTTTTTG+TGG | + | chr1_2:18405342-18405361 | Msa0060620:intron | 30.0% |
| !!! | GTTATGGTTGTTGTTTTTGT+GGG | + | chr1_2:18405343-18405362 | Msa0060620:intron | 30.0% |
| TGTCTTATGCATGGATAATA+TGG | + | chr1_2:18405593-18405612 | Msa0060620:intron | 30.0% | |
| GATTTAAACCAATAAGAGAG+TGG | - | chr1_2:18405798-18405817 | None:intergenic | 30.0% | |
| AAAATTGAACCTACACAAAG+TGG | + | chr1_2:18405837-18405856 | Msa0060620:intron | 30.0% | |
| TAGTTAAAAGCGAGTTAAAC+CGG | + | chr1_2:18406097-18406116 | Msa0060620:intron | 30.0% | |
| ATAAACGTTAAACGCATGTT+TGG | - | chr1_2:18406198-18406217 | None:intergenic | 30.0% | |
| !!! | CTTCTTTTTTCCTCATTGAT+TGG | + | chr1_2:18406310-18406329 | Msa0060620:intron | 30.0% |
| ! | ATAAAGGGAACATCAACTTT+TGG | - | chr1_2:18406520-18406539 | None:intergenic | 30.0% |
| GAAACTAAGTGAATCACATA+AGG | - | chr1_2:18406634-18406653 | None:intergenic | 30.0% | |
| GCAGGAACATTTAGTAATAT+TGG | - | chr1_2:18406698-18406717 | None:intergenic | 30.0% | |
| TATGGTTGTCTTGAATGATA+AGG | + | chr1_2:18406737-18406756 | Msa0060620:intron | 30.0% | |
| ! | CATTTAAGTTTCTTGGTTAC+TGG | + | chr1_2:18406772-18406791 | Msa0060620:intron | 30.0% |
| ACATATAATGCATTAGGCAT+TGG | - | chr1_2:18406838-18406857 | None:intergenic | 30.0% | |
| CCTTCAACATATAATGCATT+AGG | - | chr1_2:18406844-18406863 | None:intergenic | 30.0% | |
| CCTAATGCATTATATGTTGA+AGG | + | chr1_2:18406841-18406860 | Msa0060620:CDS | 30.0% | |
| ! | ATTTGAGTCATACCCTATTT+TGG | - | chr1_2:18406918-18406937 | None:intergenic | 30.0% |
| TGTATGTCATAAACTAGTCA+AGG | - | chr1_2:18406969-18406988 | None:intergenic | 30.0% | |
| ! | GAGCTTTTATTGTGTAAATC+AGG | + | chr1_2:18407038-18407057 | Msa0060620:intron | 30.0% |
| TTTGCATTATATACGGTGTT+AGG | - | chr1_2:18407433-18407452 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCAGGTAGAGAAG+TGG | + | chr1_2:18407463-18407482 | Msa0060620:intron | 30.0% |
| !!! | TTTTTTTCAGGTAGAGAAGT+GGG | + | chr1_2:18407464-18407483 | Msa0060620:intron | 30.0% |
| ! | CAGCTCTAATTAAAGAATCA+GGG | - | chr1_2:18407530-18407549 | None:intergenic | 30.0% |
| ! | ACAGCTCTAATTAAAGAATC+AGG | - | chr1_2:18407531-18407550 | None:intergenic | 30.0% |
| ! | CTGATGATGTTGATGAATAT+CGG | + | chr1_2:18407619-18407638 | Msa0060620:CDS | 30.0% |
| TTGAATGTATCTACATGTGT+TGG | - | chr1_2:18408076-18408095 | None:intergenic | 30.0% | |
| CTAACATATTTAGCCAACTT+CGG | - | chr1_2:18408172-18408191 | None:intergenic | 30.0% | |
| GAGAATTAGAAATATCTAGC+TGG | - | chr1_2:18408426-18408445 | None:intergenic | 30.0% | |
| TGCATTTGCATGGATAATAA+TGG | + | chr1_2:18408446-18408465 | Msa0060620:intron | 30.0% | |
| ATTTGCATGGATAATAATGG+TGG | + | chr1_2:18408449-18408468 | Msa0060620:intron | 30.0% | |
| TTGCTCTTGTCAAATAGATT+GGG | + | chr1_2:18408477-18408496 | Msa0060620:intron | 30.0% | |
| TGCACGAAATGCAAAAAATA+AGG | + | chr1_2:18408658-18408677 | Msa0060620:CDS | 30.0% | |
| !! | TAGTTGAATTTCTGGTATCA+TGG | - | chr1_2:18408709-18408728 | None:intergenic | 30.0% |
| ! | ATACAGTTTAATTTCTAGGC+AGG | - | chr1_2:18408755-18408774 | None:intergenic | 30.0% |
| !! | AGATAAACTTGGTTTGGAAT+CGG | + | chr1_2:18408873-18408892 | Msa0060620:intron | 30.0% |
| !! | CAGTTTTGTAGAATTGTGTT+AGG | + | chr1_2:18409089-18409108 | Msa0060620:intron | 30.0% |
| CGAACTCATTCTTAGAATTT+GGG | - | chr1_2:18409120-18409139 | None:intergenic | 30.0% | |
| ACGAACTCATTCTTAGAATT+TGG | - | chr1_2:18409121-18409140 | None:intergenic | 30.0% | |
| !! | ATTTGTTCCTTTTAGAAGAC+TGG | + | chr1_2:18409203-18409222 | Msa0060620:intron | 30.0% |
| ATGCACCAATGAAGAAAATA+AGG | + | chr1_2:18409296-18409315 | Msa0060620:intron | 30.0% | |
| TGCACCAATGAAGAAAATAA+GGG | + | chr1_2:18409297-18409316 | Msa0060620:intron | 30.0% | |
| TAGGCAAAAGTTAAGATAGA+TGG | + | chr1_2:18409326-18409345 | Msa0060620:intron | 30.0% | |
| AGGCAAAAGTTAAGATAGAT+GGG | + | chr1_2:18409327-18409346 | Msa0060620:intron | 30.0% | |
| TTAAAGAACTTGACCTTGAA+TGG | - | chr1_2:18409386-18409405 | None:intergenic | 30.0% | |
| TCAAATTATTGGGAAGCTAT+TGG | + | chr1_2:18409540-18409559 | Msa0060620:CDS | 30.0% | |
| TTGGTTATATTAACCATTGC+AGG | + | chr1_2:18409740-18409759 | Msa0060620:three_prime_UTR | 30.0% | |
| CAATATACTATTTCCTGCAA+TGG | - | chr1_2:18409756-18409775 | None:intergenic | 30.0% | |
| AGCCATATGTATTTCTTAGA+AGG | + | chr1_2:18409798-18409817 | Msa0060620:three_prime_UTR | 30.0% | |
| TCTATCTATGTTGTAACACA+GGG | + | chr1_2:18409850-18409869 | Msa0060620:three_prime_UTR | 30.0% | |
| AAAGCAAGGTTAAGACAATT+TGG | + | chr1_2:18409908-18409927 | Msa0060620:three_prime_UTR | 30.0% | |
| TGTTGTGGTTGTTGAAGAAT+GGG | - | chr1_2:18405223-18405242 | None:intergenic | 35.0% | |
| TTGTTGTGGTTGTTGAAGAA+TGG | - | chr1_2:18405224-18405243 | None:intergenic | 35.0% | |
| TGAAGTGAAGGAACATGAAA+CGG | - | chr1_2:18405252-18405271 | None:intergenic | 35.0% | |
| CTTAAGAGATTGTGAAGTGA+AGG | - | chr1_2:18405264-18405283 | None:intergenic | 35.0% | |
| CTTCACTTCACAATCTCTTA+AGG | + | chr1_2:18405262-18405281 | Msa0060620:CDS | 35.0% | |
| CAGAAGTAGCAAAAGGAAAA+AGG | - | chr1_2:18405300-18405319 | None:intergenic | 35.0% | |
| TTACATTAGGGTGAGTGATA+AGG | - | chr1_2:18405490-18405509 | None:intergenic | 35.0% | |
| ! | GTGTTTTCTTGTCTTATGCA+TGG | + | chr1_2:18405584-18405603 | Msa0060620:intron | 35.0% |
| !!! | TATGTGTGTGTTTGGTTTTG+CGG | + | chr1_2:18405692-18405711 | Msa0060620:intron | 35.0% |
| TCTAATACCCACTCTCTTAT+TGG | + | chr1_2:18405787-18405806 | Msa0060620:intron | 35.0% | |
| ACTCATCAATAGACGTGATT+TGG | + | chr1_2:18406120-18406139 | Msa0060620:intron | 35.0% | |
| CTCATCAATAGACGTGATTT+GGG | + | chr1_2:18406121-18406140 | Msa0060620:intron | 35.0% | |
| TCATCAATAGACGTGATTTG+GGG | + | chr1_2:18406122-18406141 | Msa0060620:intron | 35.0% | |
| TGCGTTTAACGTTTATGATG+CGG | + | chr1_2:18406202-18406221 | Msa0060620:intron | 35.0% | |
| ! | TTTCCTCATTGATTGGGTAA+TGG | + | chr1_2:18406317-18406336 | Msa0060620:intron | 35.0% |
| ACTGATGAAATTAAGAGAGC+AGG | - | chr1_2:18406716-18406735 | None:intergenic | 35.0% | |
| TTAACGCAGCAATGCTATAT+TGG | + | chr1_2:18406812-18406831 | Msa0060620:CDS | 35.0% | |
| GTGACAGTATATTCTACAAC+AGG | - | chr1_2:18407153-18407172 | None:intergenic | 35.0% | |
| AAGATACTTGATACCTCAAG+TGG | - | chr1_2:18407183-18407202 | None:intergenic | 35.0% | |
| CTAAAACTGGCAAATCTACA+GGG | + | chr1_2:18407493-18407512 | Msa0060620:CDS | 35.0% | |
| ! | CACTTTTGACCTATTCACTA+AGG | - | chr1_2:18407559-18407578 | None:intergenic | 35.0% |
| CATCATCAGTATCATCATCT+GGG | - | chr1_2:18407608-18407627 | None:intergenic | 35.0% | |
| ACATCATCAGTATCATCATC+TGG | - | chr1_2:18407609-18407628 | None:intergenic | 35.0% | |
| ACTCTAGATAGCCTCTAATT+TGG | + | chr1_2:18407936-18407955 | Msa0060620:intron | 35.0% | |
| ATAGCCTCTAATTTGGTTGT+TGG | + | chr1_2:18407943-18407962 | Msa0060620:intron | 35.0% | |
| TGGTTCGACTATTTCAGAAT+AGG | + | chr1_2:18407963-18407982 | Msa0060620:intron | 35.0% | |
| GGTTCGACTATTTCAGAATA+GGG | + | chr1_2:18407964-18407983 | Msa0060620:intron | 35.0% | |
| CAATCAATACATGTCTGTGT+CGG | - | chr1_2:18408032-18408051 | None:intergenic | 35.0% | |
| !! | TACATGTGTTGGTGTTGTAT+CGG | - | chr1_2:18408065-18408084 | None:intergenic | 35.0% |
| CGAAGTTGGCTAAATATGTT+AGG | + | chr1_2:18408170-18408189 | Msa0060620:intron | 35.0% | |
| CTCTTTGCATAAGAATGACA+TGG | - | chr1_2:18408305-18408324 | None:intergenic | 35.0% | |
| CCATTCATTTAATGGAGAGA+TGG | - | chr1_2:18408328-18408347 | None:intergenic | 35.0% | |
| CCATCTCTCCATTAAATGAA+TGG | + | chr1_2:18408325-18408344 | Msa0060620:intron | 35.0% | |
| TCTAATTCTCTGCATTTGCA+TGG | + | chr1_2:18408436-18408455 | Msa0060620:intron | 35.0% | |
| CTTGCTCTTGTCAAATAGAT+TGG | + | chr1_2:18408476-18408495 | Msa0060620:intron | 35.0% | |
| CACTCTGAATCAATGGAAAA+GGG | + | chr1_2:18408560-18408579 | Msa0060620:CDS | 35.0% | |
| AATGGAAAAGGGTTGCATAT+TGG | + | chr1_2:18408571-18408590 | Msa0060620:CDS | 35.0% | |
| TCTTCCACAGTAATGATAAG+TGG | - | chr1_2:18408826-18408845 | None:intergenic | 35.0% | |
| GGAAGAAAATGAAACTGTTC+TGG | + | chr1_2:18408840-18408859 | Msa0060620:intron | 35.0% | |
| CTCATTCTTAGAATTTGGGT+TGG | - | chr1_2:18409116-18409135 | None:intergenic | 35.0% | |
| AGAGATTAAAGGCTATGCAT+TGG | - | chr1_2:18409169-18409188 | None:intergenic | 35.0% | |
| !! | TTCCTTTTAGAAGACTGGAT+AGG | + | chr1_2:18409208-18409227 | Msa0060620:intron | 35.0% |
| !! | TCCTTTTAGAAGACTGGATA+GGG | + | chr1_2:18409209-18409228 | Msa0060620:intron | 35.0% |
| ! | TTACCCTTTTGATCCATTCA+AGG | + | chr1_2:18409370-18409389 | Msa0060620:intron | 35.0% |
| TGACCTTGAATGGATCAAAA+GGG | - | chr1_2:18409376-18409395 | None:intergenic | 35.0% | |
| TTGACCTTGAATGGATCAAA+AGG | - | chr1_2:18409377-18409396 | None:intergenic | 35.0% | |
| AGCTGCATGTCTCAAATTAT+TGG | + | chr1_2:18409529-18409548 | Msa0060620:intron | 35.0% | |
| GCTGCATGTCTCAAATTATT+GGG | + | chr1_2:18409530-18409549 | Msa0060620:intron | 35.0% | |
| TCTTGTATTTGAGTGACCAT+TGG | - | chr1_2:18409655-18409674 | None:intergenic | 35.0% | |
| CTCTATCTATGTTGTAACAC+AGG | + | chr1_2:18409849-18409868 | Msa0060620:three_prime_UTR | 35.0% | |
| ! | ACTGAATTGGTTTCAAAGCA+AGG | + | chr1_2:18409894-18409913 | Msa0060620:three_prime_UTR | 35.0% |
| ! | ATTTGGTTTCACACCTCATT+TGG | + | chr1_2:18409925-18409944 | Msa0060620:three_prime_UTR | 35.0% |
| CATTACAGTACAGTGAAGGA+CGG | + | chr1_2:18405096-18405115 | Msa0060620:five_prime_UTR | 40.0% | |
| TATCGGAAGATTGAGAGTGA+AGG | - | chr1_2:18405183-18405202 | None:intergenic | 40.0% | |
| GTAGAGAAAGAAGGGGTTAT+CGG | - | chr1_2:18405200-18405219 | None:intergenic | 40.0% | |
| AGAATGGGGTAGAGAAAGAA+GGG | - | chr1_2:18405208-18405227 | None:intergenic | 40.0% | |
| AAGAATGGGGTAGAGAAAGA+AGG | - | chr1_2:18405209-18405228 | None:intergenic | 40.0% | |
| GTTGTGGTTGTTGAAGAATG+GGG | - | chr1_2:18405222-18405241 | None:intergenic | 40.0% | |
| !! | ATGAAACGGTTGGTTTGTTG+TGG | - | chr1_2:18405238-18405257 | None:intergenic | 40.0% |
| TTGTCTGCAGAAGTAGCAAA+AGG | - | chr1_2:18405307-18405326 | None:intergenic | 40.0% | |
| TATGTCTCACCACTTTGTGT+AGG | - | chr1_2:18405849-18405868 | None:intergenic | 40.0% | |
| ATCACGTCTATTGATGAGTC+CGG | - | chr1_2:18406119-18406138 | None:intergenic | 40.0% | |
| ! | CATCAATAGACGTGATTTGG+GGG | + | chr1_2:18406123-18406142 | Msa0060620:intron | 40.0% |
| ! | GGGGATGGAATTGATTTAGA+TGG | + | chr1_2:18406142-18406161 | Msa0060620:intron | 40.0% |
| AACAGGCAAAATCTGGTGTT+TGG | - | chr1_2:18406175-18406194 | None:intergenic | 40.0% | |
| ! | TGTTTGGAACAGGCAAAATC+TGG | - | chr1_2:18406182-18406201 | None:intergenic | 40.0% |
| ! | GTTAAACGCATGTTTGGAAC+AGG | - | chr1_2:18406192-18406211 | None:intergenic | 40.0% |
| TCTGAACACTCGTATGATAG+TGG | - | chr1_2:18406253-18406272 | None:intergenic | 40.0% | |
| TGTCCATTACCCAATCAATG+AGG | - | chr1_2:18406323-18406342 | None:intergenic | 40.0% | |
| GGTTGTCTTGAATGATAAGG+TGG | + | chr1_2:18406740-18406759 | Msa0060620:intron | 40.0% | |
| CTCTTGACAGATTTGCAGAA+GGG | + | chr1_2:18406869-18406888 | Msa0060620:CDS | 40.0% | |
| !! | ATTTTGGTGAACAGGCTGTA+AGG | - | chr1_2:18406902-18406921 | None:intergenic | 40.0% |
| TACAGCCTGTTCACCAAAAT+AGG | + | chr1_2:18406902-18406921 | Msa0060620:CDS | 40.0% | |
| ACAGCCTGTTCACCAAAATA+GGG | + | chr1_2:18406903-18406922 | Msa0060620:CDS | 40.0% | |
| !!! | CATACCCTATTTTGGTGAAC+AGG | - | chr1_2:18406910-18406929 | None:intergenic | 40.0% |
| CATAAACTAGTCAAGGATGC+AGG | - | chr1_2:18406962-18406981 | None:intergenic | 40.0% | |
| GTTGGAATAGTTCTTGATGC+TGG | + | chr1_2:18407060-18407079 | Msa0060620:CDS | 40.0% | |
| AGTTCTTGATGCTGGTATAG+AGG | + | chr1_2:18407068-18407087 | Msa0060620:CDS | 40.0% | |
| !! | AAGTGGGTTGATCCTAAAAC+TGG | + | chr1_2:18407480-18407499 | Msa0060620:CDS | 40.0% |
| ! | CCTGTAGATTTGCCAGTTTT+AGG | - | chr1_2:18407495-18407514 | None:intergenic | 40.0% |
| CCTAAAACTGGCAAATCTAC+AGG | + | chr1_2:18407492-18407511 | Msa0060620:CDS | 40.0% | |
| ! | TGATGTTGATGAATATCGGC+AGG | + | chr1_2:18407623-18407642 | Msa0060620:CDS | 40.0% |
| ! | GATGTTGATGAATATCGGCA+GGG | + | chr1_2:18407624-18407643 | Msa0060620:CDS | 40.0% |
| TATAAGCCATCTAGTGGTGA+AGG | + | chr1_2:18407819-18407838 | Msa0060620:CDS | 40.0% | |
| !! | CTGATTTGGGACTTAGAGAT+AGG | - | chr1_2:18407897-18407916 | None:intergenic | 40.0% |
| CTAGAGTTTACTAACCTCCT+CGG | - | chr1_2:18407923-18407942 | None:intergenic | 40.0% | |
| CGAACCAACAACCAAATTAG+AGG | - | chr1_2:18407950-18407969 | None:intergenic | 40.0% | |
| AGAATAGGGTTATGTAGCAC+AGG | + | chr1_2:18407978-18407997 | Msa0060620:intron | 40.0% | |
| TACATGTCTGTGTCGGATAT+TGG | - | chr1_2:18408025-18408044 | None:intergenic | 40.0% | |
| AGTATTGTGGAGCTTTACTG+AGG | - | chr1_2:18408532-18408551 | None:intergenic | 40.0% | |
| CAGTAAAGCTCCACAATACT+TGG | + | chr1_2:18408532-18408551 | Msa0060620:CDS | 40.0% | |
| GCACTCTGAATCAATGGAAA+AGG | + | chr1_2:18408559-18408578 | Msa0060620:CDS | 40.0% | |
| TTGCATATTGGCAAGTGATG+TGG | + | chr1_2:18408583-18408602 | Msa0060620:CDS | 40.0% | |
| AGTAATGATAAGTGGCTGCA+AGG | - | chr1_2:18408818-18408837 | None:intergenic | 40.0% | |
| GATGACACTGCAGATAAACT+TGG | + | chr1_2:18408862-18408881 | Msa0060620:intron | 40.0% | |
| CACTGCAGATAAACTTGGTT+TGG | + | chr1_2:18408867-18408886 | Msa0060620:intron | 40.0% | |
| CAATGTGTTCGATGTTTGTG+CGG | - | chr1_2:18409015-18409034 | None:intergenic | 40.0% | |
| TCGAACACATTGAATGAGAG+TGG | + | chr1_2:18409023-18409042 | Msa0060620:intron | 40.0% | |
| CGAACACATTGAATGAGAGT+GGG | + | chr1_2:18409024-18409043 | Msa0060620:intron | 40.0% | |
| !! | CAAAACTGATTTGTAAGGCG+AGG | - | chr1_2:18409077-18409096 | None:intergenic | 40.0% |
| ACCCTATCCAGTCTTCTAAA+AGG | - | chr1_2:18409213-18409232 | None:intergenic | 40.0% | |
| TAATAGCTGCTCACAAAGCA+GGG | + | chr1_2:18409565-18409584 | Msa0060620:CDS | 40.0% | |
| ACTTCATTTATGCCTGCCAA+TGG | + | chr1_2:18409636-18409655 | Msa0060620:CDS | 40.0% | |
| TCTATGTTGTAACACAGGGT+AGG | + | chr1_2:18409854-18409873 | Msa0060620:three_prime_UTR | 40.0% | |
| ! | GAAGGACGGTACTGAACATA+AGG | + | chr1_2:18405110-18405129 | Msa0060620:five_prime_UTR | 45.0% |
| GAATGGGGTAGAGAAAGAAG+GGG | - | chr1_2:18405207-18405226 | None:intergenic | 45.0% | |
| GTGAAGGAACATGAAACGGT+TGG | - | chr1_2:18405248-18405267 | None:intergenic | 45.0% | |
| TCCAACAAAAGAGTGAGTGC+TGG | + | chr1_2:18405880-18405899 | Msa0060620:intron | 45.0% | |
| ! | ACCAGCACTCACTCTTTTGT+TGG | - | chr1_2:18405884-18405903 | None:intergenic | 45.0% |
| ! | AATAGACGTGATTTGGGGGA+TGG | + | chr1_2:18406127-18406146 | Msa0060620:intron | 45.0% |
| !! | GAACACTCGTATGATAGTGG+CGG | - | chr1_2:18406250-18406269 | None:intergenic | 45.0% |
| GGTTACTGGTCAAATTCTGC+AGG | + | chr1_2:18406786-18406805 | Msa0060620:intron | 45.0% | |
| GCTCTTGACAGATTTGCAGA+AGG | + | chr1_2:18406868-18406887 | Msa0060620:CDS | 45.0% | |
| ACAGATTTGCAGAAGGGTCA+TGG | + | chr1_2:18406875-18406894 | Msa0060620:CDS | 45.0% | |
| CAGATTTGCAGAAGGGTCAT+GGG | + | chr1_2:18406876-18406895 | Msa0060620:CDS | 45.0% | |
| CTGGTATAGAGGAAGAGCTT+CGG | + | chr1_2:18407079-18407098 | Msa0060620:CDS | 45.0% | |
| TTCTACAACAGGCAATCCGA+GGG | - | chr1_2:18407142-18407161 | None:intergenic | 45.0% | |
| ATTCTACAACAGGCAATCCG+AGG | - | chr1_2:18407143-18407162 | None:intergenic | 45.0% | |
| AAACTGGCAAATCTACAGGG+AGG | + | chr1_2:18407496-18407515 | Msa0060620:CDS | 45.0% | |
| CTGTGCAGACCTTAGTGAAT+AGG | + | chr1_2:18407547-18407566 | Msa0060620:CDS | 45.0% | |
| TGATGAATATCGGCAGGGAT+TGG | + | chr1_2:18407629-18407648 | Msa0060620:CDS | 45.0% | |
| CCTGTATAAGGCGAACAACA+GGG | - | chr1_2:18407768-18407787 | None:intergenic | 45.0% | |
| CCTGTTGTTCGCCTTATACA+GGG | + | chr1_2:18407766-18407785 | Msa0060620:intron | 45.0% | |
| GTAGGTCTACTCCCTGTATA+AGG | - | chr1_2:18407780-18407799 | None:intergenic | 45.0% | |
| TATACAGGGAGTAGACCTAC+TGG | + | chr1_2:18407780-18407799 | Msa0060620:intron | 45.0% | |
| GGCTGTTATAAGCCATCTAG+TGG | + | chr1_2:18407813-18407832 | Msa0060620:CDS | 45.0% | |
| AGAGATAGGCTCAAGGGAAT+TGG | - | chr1_2:18407883-18407902 | None:intergenic | 45.0% | |
| GGACTTAGAGATAGGCTCAA+GGG | - | chr1_2:18407889-18407908 | None:intergenic | 45.0% | |
| GTAGTTGCTACATCCGAAGT+TGG | + | chr1_2:18408156-18408175 | Msa0060620:intron | 45.0% | |
| ! | TTTTTGCCATGTGTGCTAGC+TGG | + | chr1_2:18408506-18408525 | Msa0060620:intron | 45.0% |
| ! | GAGTGCATCACCAAGTATTG+TGG | - | chr1_2:18408545-18408564 | None:intergenic | 45.0% |
| GGTGATGCACTCTGAATCAA+TGG | + | chr1_2:18408553-18408572 | Msa0060620:CDS | 45.0% | |
| GCAGCCACTTATCATTACTG+TGG | + | chr1_2:18408819-18408838 | Msa0060620:intron | 45.0% | |
| GATGTTTGTGCGGACAGTTT+AGG | - | chr1_2:18409005-18409024 | None:intergenic | 45.0% | |
| GTAATAGCTGCTCACAAAGC+AGG | + | chr1_2:18409564-18409583 | Msa0060620:CDS | 45.0% | |
| GTATTTGAGTGACCATTGGC+AGG | - | chr1_2:18409651-18409670 | None:intergenic | 45.0% | |
| !!! | TATGATATATATATATTTTT+TGG | + | chr1_2:18409721-18409740 | Msa0060620:three_prime_UTR | 5.0% |
| !! | AGTGTGATGATAGTGCCGAC+TGG | + | chr1_2:18405389-18405408 | Msa0060620:CDS | 50.0% |
| !! | ATGATAGTGCCGACTGGAAC+TGG | + | chr1_2:18405395-18405414 | Msa0060620:CDS | 50.0% |
| ACCAGCAAACCCACCAATAG+CGG | - | chr1_2:18405423-18405442 | None:intergenic | 50.0% | |
| !!! | GTGTGTGTTTGGTTTTGCGG+TGG | + | chr1_2:18405695-18405714 | Msa0060620:intron | 50.0% |
| TACAAGTAGCCGATGCTGCA+AGG | + | chr1_2:18407112-18407131 | Msa0060620:CDS | 50.0% | |
| ACAAGTAGCCGATGCTGCAA+GGG | + | chr1_2:18407113-18407132 | Msa0060620:CDS | 50.0% | |
| TGTCACAGACACTCCACTTG+AGG | + | chr1_2:18407167-18407186 | Msa0060620:CDS | 50.0% | |
| GTGAATGCCATCGCTGTTGT+TGG | + | chr1_2:18407576-18407595 | Msa0060620:CDS | 50.0% | |
| GAAACGTCCAACAACAGCGA+TGG | - | chr1_2:18407586-18407605 | None:intergenic | 50.0% | |
| CCCTGTTGTTCGCCTTATAC+AGG | + | chr1_2:18407765-18407784 | Msa0060620:intron | 50.0% | |
| CCCTGTATAAGGCGAACAAC+AGG | - | chr1_2:18407769-18407788 | None:intergenic | 50.0% | |
| GGAACTCCTTCACCACTAGA+TGG | - | chr1_2:18407828-18407847 | None:intergenic | 50.0% | |
| GGGCATGTGCACAAGGAATT+CGG | - | chr1_2:18407849-18407868 | None:intergenic | 50.0% | |
| AGGGAATTGGAGCCATTGCA+GGG | - | chr1_2:18407870-18407889 | None:intergenic | 50.0% | |
| AAGGGAATTGGAGCCATTGC+AGG | - | chr1_2:18407871-18407890 | None:intergenic | 50.0% | |
| GGGACTTAGAGATAGGCTCA+AGG | - | chr1_2:18407890-18407909 | None:intergenic | 50.0% | |
| GCACAGGCACTTCTGATTGA+AGG | + | chr1_2:18407994-18408013 | Msa0060620:intron | 50.0% | |
| TGGATTCTGTAGTCCTTCCC+AGG | + | chr1_2:18408603-18408622 | Msa0060620:CDS | 50.0% | |
| GGATTCTGTAGTCCTTCCCA+GGG | + | chr1_2:18408604-18408623 | Msa0060620:CDS | 50.0% | |
| ATAGCGGCTCCAGTTCCAGT+CGG | - | chr1_2:18405407-18405426 | None:intergenic | 55.0% | |
| ACTGGAACTGGAGCCGCTAT+TGG | + | chr1_2:18405407-18405426 | Msa0060620:CDS | 55.0% | |
| GAACTGGAGCCGCTATTGGT+GGG | + | chr1_2:18405411-18405430 | Msa0060620:CDS | 55.0% | |
| ! | GAAGAGAGAGCACGAGCAAC+AGG | - | chr1_2:18405455-18405474 | None:intergenic | 55.0% |
| !! | CACTCGTATGATAGTGGCGG+AGG | - | chr1_2:18406247-18406266 | None:intergenic | 55.0% |
| ACAGGGAGTAGACCTACTGG+CGG | + | chr1_2:18407783-18407802 | Msa0060620:intron | 55.0% | |
| ! | ATTGCAGGGGCATGTGCACA+AGG | - | chr1_2:18407856-18407875 | None:intergenic | 55.0% |
| TTGTGCACATGCCCCTGCAA+TGG | + | chr1_2:18407855-18407874 | Msa0060620:CDS | 55.0% | |
| GGGAATTGGAGCCATTGCAG+GGG | - | chr1_2:18407869-18407888 | None:intergenic | 55.0% | |
| AAGTCCCAAATCAGCAGCCG+AGG | + | chr1_2:18407903-18407922 | Msa0060620:intron | 55.0% | |
| !! | ACCTCCTCGGCTGCTGATTT+GGG | - | chr1_2:18407910-18407929 | None:intergenic | 55.0% |
| ! | AACCTCCTCGGCTGCTGATT+TGG | - | chr1_2:18407911-18407930 | None:intergenic | 55.0% |
| TTCCCAGGGATGCTTGTGGA+GGG | + | chr1_2:18408618-18408637 | Msa0060620:CDS | 55.0% | |
| GGAACTGGAGCCGCTATTGG+TGG | + | chr1_2:18405410-18405429 | Msa0060620:CDS | 60.0% | |
| !! | GCCGCTATTGGTGGGTTTGC+TGG | + | chr1_2:18405419-18405438 | Msa0060620:CDS | 60.0% |
| GAGGGAAGCCCTTGCAGCAT+CGG | - | chr1_2:18407124-18407143 | None:intergenic | 60.0% | |
| GATGCTGCAAGGGCTTCCCT+CGG | + | chr1_2:18407123-18407142 | Msa0060620:CDS | 60.0% | |
| CAGGGAGTAGACCTACTGGC+GGG | + | chr1_2:18407784-18407803 | Msa0060620:intron | 60.0% | |
| AGACCTACTGGCGGGAGTTG+AGG | + | chr1_2:18407792-18407811 | Msa0060620:CDS | 60.0% | |
| TCCCAAATCAGCAGCCGAGG+AGG | + | chr1_2:18407906-18407925 | Msa0060620:intron | 60.0% | |
| CTGAGGCCAGCTAGCACACA+TGG | - | chr1_2:18408515-18408534 | None:intergenic | 60.0% | |
| GTCCTTCCCAGGGATGCTTG+TGG | + | chr1_2:18408614-18408633 | Msa0060620:CDS | 60.0% | |
| CTCCACAAGCATCCCTGGGA+AGG | - | chr1_2:18408619-18408638 | None:intergenic | 60.0% | |
| CTTCCCAGGGATGCTTGTGG+AGG | + | chr1_2:18408617-18408636 | Msa0060620:CDS | 60.0% | |
| TCCCAGGGATGCTTGTGGAG+GGG | + | chr1_2:18408619-18408638 | Msa0060620:CDS | 60.0% | |
| TCCCCTCCACAAGCATCCCT+GGG | - | chr1_2:18408623-18408642 | None:intergenic | 60.0% | |
| AGGGATGCTTGTGGAGGGGA+CGG | + | chr1_2:18408623-18408642 | Msa0060620:CDS | 60.0% | |
| CAGCCTCAACTCCCGCCAGT+AGG | - | chr1_2:18407798-18407817 | None:intergenic | 65.0% | |
| GTCCCCTCCACAAGCATCCC+TGG | - | chr1_2:18408624-18408643 | None:intergenic | 65.0% | |
| GGGATGCTTGTGGAGGGGAC+GGG | + | chr1_2:18408624-18408643 | Msa0060620:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18405093 | 18409948 | 18405093 | ID=Msa0060620;Name=Msa0060620 |
| chr1_2 | mRNA | 18405093 | 18409948 | 18405093 | ID=Msa0060620-mRNA-1;Parent=Msa0060620;Name=Msa0060620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=83|0.71|0.75|1|0.85|0.87|8|256|366 |
| chr1_2 | exon | 18405093 | 18405283 | 18405093 | ID=Msa0060620-mRNA-1:exon:7166;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18405371 | 18405505 | 18405371 | ID=Msa0060620-mRNA-1:exon:7167;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18406808 | 18406924 | 18406808 | ID=Msa0060620-mRNA-1:exon:7168;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18407060 | 18407188 | 18407060 | ID=Msa0060620-mRNA-1:exon:7169;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18407474 | 18407650 | 18407474 | ID=Msa0060620-mRNA-1:exon:7170;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18407787 | 18407904 | 18407787 | ID=Msa0060620-mRNA-1:exon:7171;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18408525 | 18408679 | 18408525 | ID=Msa0060620-mRNA-1:exon:7172;Parent=Msa0060620-mRNA-1 |
| chr1_2 | exon | 18409531 | 18409948 | 18409531 | ID=Msa0060620-mRNA-1:exon:7173;Parent=Msa0060620-mRNA-1 |
| chr1_2 | five_prime_UTR | 18405093 | 18405175 | 18405093 | ID=Msa0060620-mRNA-1:five_prime_utr;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18405176 | 18405283 | 18405176 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18405371 | 18405505 | 18405371 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18406808 | 18406924 | 18406808 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18407060 | 18407188 | 18407060 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18407474 | 18407650 | 18407474 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18407787 | 18407904 | 18407787 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18408525 | 18408679 | 18408525 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | CDS | 18409531 | 18409692 | 18409531 | ID=Msa0060620-mRNA-1:cds;Parent=Msa0060620-mRNA-1 |
| chr1_2 | three_prime_UTR | 18409693 | 18409948 | 18409693 | ID=Msa0060620-mRNA-1:three_prime_utr;Parent=Msa0060620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
