AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060850 MtrunA17_Chr1g0160711 71.667 180 30 6 21 189 18 187 1.46e-76 243
Msa0060850 MtrunA17_Chr1g0160761 62.500 200 51 6 1 189 1 187 8.79e-68 220
Msa0060850 MtrunA17_Chr1g0160721 62.051 195 53 8 1 189 12 191 2.20e-61 203
Msa0060850 MtrunA17_Chr1g0160661 57.949 195 61 9 1 189 27 206 4.09e-55 183
Msa0060850 MtrunA17_Chr1g0160561 52.195 205 73 9 1 189 1 196 3.83e-49 171
Msa0060850 MtrunA17_Chr1g0160701 51.648 182 66 8 18 188 34 204 1.59e-38 141
Msa0060850 MtrunA17_Chr3g0088331 32.812 192 94 8 28 209 46 212 1.33e-20 87.8
Msa0060850 MtrunA17_Chr1g0158151 37.629 194 80 12 1 167 1 180 5.59e-20 88.6
Msa0060850 MtrunA17_Chr1g0157791 37.838 185 78 10 7 167 6 177 1.59e-19 87.0
Msa0060850 MtrunA17_Chr1g0157881 38.421 190 69 12 28 188 60 230 7.82e-19 85.1
Msa0060850 MtrunA17_Chr1g0157911 34.375 192 93 10 4 176 11 188 9.95e-19 84.7
Msa0060850 MtrunA17_Chr1g0158411 36.486 148 74 7 28 168 54 188 1.16e-17 81.6
Msa0060850 MtrunA17_Chr6g0467711 37.748 151 63 7 28 167 48 178 1.54e-16 78.6
Msa0060850 MtrunA17_Chr1g0157991 48.837 86 33 2 28 112 38 113 1.90e-16 78.2
Msa0060850 MtrunA17_Chr1g0158761 38.194 144 64 7 7 142 9 135 2.64e-16 77.8
Msa0060850 MtrunA17_Chr1g0157961 50.000 88 33 3 26 112 41 118 2.70e-16 76.6
Msa0060850 MtrunA17_Chr1g0158061 39.216 153 69 7 28 167 35 176 5.40e-16 75.5
Msa0060850 MtrunA17_Chr1g0158191 39.623 159 63 9 28 165 34 180 6.17e-16 76.6
Msa0060850 MtrunA17_Chr1g0157861 36.257 171 75 10 28 176 45 203 7.86e-16 76.3
Msa0060850 MtrunA17_Chr1g0158461 33.178 214 112 13 28 228 55 250 1.29e-15 74.7
Msa0060850 MtrunA17_Chr1g0158041 39.752 161 63 10 28 167 36 183 1.97e-15 75.1
Msa0060850 MtrunA17_Chr1g0158731 30.131 229 114 10 4 210 8 212 6.45e-15 72.8
Msa0060850 MtrunA17_Chr1g0158331 33.889 180 89 9 4 166 20 186 1.01e-14 72.4
Msa0060850 MtrunA17_Chr1g0158121 47.619 84 32 3 28 109 39 112 2.04e-14 68.2
Msa0060850 MtrunA17_Chr1g0158661 32.515 163 82 7 6 155 17 164 2.34e-14 72.0
Msa0060850 MtrunA17_Chr1g0158631 35.593 118 60 4 6 117 17 124 2.86e-14 71.6
Msa0060850 MtrunA17_Chr1g0158541 32.432 185 83 8 3 166 16 179 9.65e-14 70.1
Msa0060850 MtrunA17_Chr1g0158301 27.119 177 107 5 1 166 16 181 1.26e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 617 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAAAAGTTTCTGATTT+TGG 0.074132 1_2:+18764003 Msa0060850:three_prime_UTR
AAAGCTGATGTTTATAGTTT+TGG 0.174080 1_2:+18764141 Msa0060850:three_prime_UTR
AACTGATCATAAACCCAAAA+AGG 0.229989 1_2:-18764240 None:intergenic
CAACTTCACCATACGACTAT+TGG 0.252740 1_2:+18756757 Msa0060850:CDS
AGTCCAAAATCAGAAACTTT+TGG 0.258440 1_2:-18764006 None:intergenic
AAAGAGTTGGATATGAATTA+AGG 0.259073 1_2:+18764667 Msa0060850:three_prime_UTR
TCTTTGTAAGAGTACCTTAT+AGG 0.261040 1_2:-18763550 None:intergenic
TCTTGTAGCAGTCAAATTAT+TGG 0.278750 1_2:+18763660 Msa0060850:three_prime_UTR
ATAACATCAGCCACCCTTTC+CGG 0.309686 1_2:+18756588 Msa0060850:CDS
GGCAAAACTCTTTCGGAGTT+GGG 0.320138 1_2:+18757043 Msa0060850:CDS
CTTTGTAAGAGTACCTTATA+GGG 0.322497 1_2:-18763549 None:intergenic
TAACCAAAACGAGATCAAAT+TGG 0.329272 1_2:-18764543 None:intergenic
TACAAATCATGAGATGAAAT+TGG 0.329342 1_2:+18764296 Msa0060850:three_prime_UTR
GAGAACTCTTTCTATGTTGA+TGG 0.329964 1_2:+18757016 Msa0060850:CDS
TACGTACCAACACATATTCT+TGG 0.333514 1_2:+18764633 Msa0060850:three_prime_UTR
ACATTTCGGTAGAATAGTTC+AGG 0.338113 1_2:-18764102 None:intergenic
CTTATGGATTTGAAGTATCT+TGG 0.338305 1_2:+18757170 Msa0060850:intron
GAACCAATTTGATCTCGTTT+TGG 0.339168 1_2:+18764540 Msa0060850:three_prime_UTR
GGTTATTGTCCTCACATGAT+AGG 0.348355 1_2:-18756652 None:intergenic
ATTGACAAAATCTCGATCAT+TGG 0.351850 1_2:-18763695 None:intergenic
CTCAATAGTCTTTGTAAAGA+TGG 0.361033 1_2:+18757193 Msa0060850:CDS
CAACTATATTCAATTTCTCT+TGG 0.367004 1_2:+18763883 Msa0060850:three_prime_UTR
ACGAGATCAAATTGGTTCCT+TGG 0.378690 1_2:-18764535 None:intergenic
CGGAGTTGGGGTTGAGAGAT+GGG 0.381921 1_2:+18757056 Msa0060850:CDS
AAACTAGGCAGTGGAGGTTA+TGG 0.384323 1_2:+18763604 Msa0060850:three_prime_UTR
AATTCATATCCAACTCTTTG+AGG 0.396980 1_2:-18764663 None:intergenic
ACAATAGCATCATCCCTATA+AGG 0.400813 1_2:+18763536 Msa0060850:three_prime_UTR
TGGCTATGGCAAAACTCTTT+CGG 0.403089 1_2:+18757036 Msa0060850:CDS
GGAAAGGGTGGCTGATGTTA+TGG 0.405082 1_2:-18756586 None:intergenic
GCATCAAGGTCAGGCTGATT+AGG 0.409447 1_2:-18764432 None:intergenic
GTTAATGTGGTACAACTCAT+TGG 0.410779 1_2:+18763748 Msa0060850:three_prime_UTR
AAGATATTGTGCCGACATTT+CGG 0.411859 1_2:-18764116 None:intergenic
AAGGAAGAACTTGGATGTAT+TGG 0.413893 1_2:+18764191 Msa0060850:three_prime_UTR
GGCATTGAGTACTTGCATAA+TGG 0.415690 1_2:+18763916 Msa0060850:three_prime_UTR
GTTAGTTCATTGTATTCCTC+TGG 0.418466 1_2:+18764495 Msa0060850:three_prime_UTR
ACGAGGGATGGAATTATTAG+AGG 0.419135 1_2:-18756795 None:intergenic
GAATGTTGATATGTACGATT+TGG 0.419198 1_2:-18756938 None:intergenic
ATTCATAGTACAAAATCAAT+TGG 0.420245 1_2:-18756673 None:intergenic
AGTTTATGTTTCTCACATCT+TGG 0.420761 1_2:+18757089 Msa0060850:intron
ATATTCTCGTACAATGTAGA+TGG 0.434914 1_2:+18756521 Msa0060850:CDS
TCGGAGTTGGGGTTGAGAGA+TGG 0.435657 1_2:+18757055 Msa0060850:CDS
TCGTCAATATATGATCAATC+TGG 0.437798 1_2:-18756892 None:intergenic
TGGCAAAACTCTTTCGGAGT+TGG 0.440561 1_2:+18757042 Msa0060850:CDS
CTCATTGGTTTCTGCGTGGA+AGG 0.448884 1_2:+18763763 Msa0060850:three_prime_UTR
ATTCATATCCAACTCTTTGA+GGG 0.448980 1_2:-18764662 None:intergenic
TTGTATTATTAATCTACAAA+TGG 0.458722 1_2:+18763461 Msa0060850:three_prime_UTR
TAACACCACAACAAGGGTTA+AGG 0.459182 1_2:-18756489 None:intergenic
GTATCGATAATAGGTTAGGT+AGG 0.459852 1_2:-18756864 None:intergenic
TCTTTCTATGTTGATGGCTA+TGG 0.465677 1_2:+18757022 Msa0060850:CDS
TGATGGAGATGGCAAATAGA+AGG 0.467596 1_2:+18764172 Msa0060850:three_prime_UTR
GTCAATGAAGTTGCTACCAT+TGG 0.468907 1_2:+18763712 Msa0060850:three_prime_UTR
TGGGATGTTGTTGATGGAGA+TGG 0.473656 1_2:+18764161 Msa0060850:three_prime_UTR
ATATATGAATTCATGCCAAA+TGG 0.476664 1_2:+18763802 Msa0060850:three_prime_UTR
AAATGATGATTGTGGCTTTG+TGG 0.482887 1_2:+18764325 Msa0060850:three_prime_UTR
ACGTCTTGTGCATCAAGGTC+AGG 0.485889 1_2:-18764441 None:intergenic
GACTGTCTTTCAGCCGGAAA+GGG 0.486146 1_2:-18756601 None:intergenic
GGCAAATAGAAGGAAGAACT+TGG 0.489646 1_2:+18764182 Msa0060850:three_prime_UTR
TCATCAAGAAGAATGTTATG+AGG 0.490231 1_2:-18763973 None:intergenic
CTGAAAAGTGTGGTGACAAA+AGG 0.492801 1_2:+18756624 Msa0060850:CDS
AACAGTCAATGTCGACCTCC+AGG 0.503549 1_2:+18757244 Msa0060850:CDS
AAGAGGAACCATTGGATACA+TGG 0.506102 1_2:+18764077 Msa0060850:three_prime_UTR
ATAGTCTTTGTAAAGATGGT+TGG 0.508324 1_2:+18757197 Msa0060850:CDS
ACTCAAGGAATAATTCTCTT+CGG 0.509190 1_2:-18763854 None:intergenic
TCCAACACTTTATCCATTGG+AGG 0.509878 1_2:-18764375 None:intergenic
ACATCTTGGTCTCTTGAAGA+TGG 0.518186 1_2:+18757103 Msa0060850:CDS
CATTCATATGTTGTAGATGA+AGG 0.518246 1_2:+18756956 Msa0060850:CDS
TACATCAATAACTGATTCCA+AGG 0.520078 1_2:+18764518 Msa0060850:three_prime_UTR
GGATAAAACCCTCAAAGAGT+TGG 0.525968 1_2:+18764654 Msa0060850:three_prime_UTR
ATCTCCAACACTTTATCCAT+TGG 0.526363 1_2:-18764378 None:intergenic
AAAATCTCGATCATTGGACT+TGG 0.526675 1_2:-18763689 None:intergenic
ATTGGCTGATCAATCTAGCC+AGG 0.526773 1_2:+18764209 Msa0060850:three_prime_UTR
GGACTGTCTTTCAGCCGGAA+AGG 0.530184 1_2:-18756602 None:intergenic
CAACAATAACATTTCTTGCA+CGG 0.534552 1_2:+18757129 Msa0060850:CDS
GTTTATGATCAGTTACAAGA+TGG 0.538012 1_2:+18764249 Msa0060850:three_prime_UTR
AAACAATTCAAGACAAAACT+AGG 0.538665 1_2:+18763589 Msa0060850:three_prime_UTR
TTTCAGGACTGTCTTTCAGC+CGG 0.540569 1_2:-18756607 None:intergenic
ATATTCAATTTCTCTTGGAG+TGG 0.540627 1_2:+18763888 Msa0060850:three_prime_UTR
ACTGCAGCAAGAGGAACCAT+TGG 0.545613 1_2:+18764069 Msa0060850:three_prime_UTR
CTTCTACGTCTTGTGCATCA+AGG 0.546175 1_2:-18764446 None:intergenic
GCAAAACTCTTTCGGAGTTG+GGG 0.546283 1_2:+18757044 Msa0060850:CDS
ATTTCTCTTGGAGTGGCTCG+AGG 0.547734 1_2:+18763895 Msa0060850:three_prime_UTR
TCCTCCAATGGATAAAGTGT+TGG 0.551225 1_2:+18764374 Msa0060850:three_prime_UTR
ATATAGTTGTTCGCAACTCA+AGG 0.552867 1_2:-18763869 None:intergenic
TATCGATAATAGGTTAGGTA+GGG 0.555399 1_2:-18756863 None:intergenic
ACCTAGTGATCGTCCTCCAA+TGG 0.555869 1_2:+18764362 Msa0060850:three_prime_UTR
TGTCTTTCAGCCGGAAAGGG+TGG 0.561906 1_2:-18756598 None:intergenic
ATTGAAATCCAATAGTCGTA+TGG 0.568248 1_2:-18756765 None:intergenic
CATTTCGGTAGAATAGTTCA+GGG 0.572152 1_2:-18764101 None:intergenic
ATGAAGTTGCTACCATTGGT+AGG 0.574751 1_2:+18763716 Msa0060850:three_prime_UTR
TCCATTGGAGGACGATCACT+AGG 0.575498 1_2:-18764363 None:intergenic
GAACTATTCTACCGAAATGT+CGG 0.578821 1_2:+18764105 Msa0060850:three_prime_UTR
TTCAAGACAAAACTAGGCAG+TGG 0.583778 1_2:+18763595 Msa0060850:three_prime_UTR
TAGGATTCATCATGTTAATG+TGG 0.602176 1_2:+18763735 Msa0060850:three_prime_UTR
ATTAATAATACAATGATACA+TGG 0.603992 1_2:-18763451 None:intergenic
TTCAGGGGCCATGTATCCAA+TGG 0.608436 1_2:-18764085 None:intergenic
GCCATCCTTAACCCTTGTTG+TGG 0.613142 1_2:+18756484 Msa0060850:CDS
GGCAAAGAAAATGATGATTG+TGG 0.613675 1_2:+18764317 Msa0060850:three_prime_UTR
TATTAATCTACAAATGGCGA+CGG 0.614710 1_2:+18763467 Msa0060850:three_prime_UTR
AAGACAAAACTAGGCAGTGG+AGG 0.616709 1_2:+18763598 Msa0060850:three_prime_UTR
GTGTCATTAACTGCAGCAAG+AGG 0.618722 1_2:+18764060 Msa0060850:three_prime_UTR
ATCAGTTATTGATGTACCAG+AGG 0.628600 1_2:-18764511 None:intergenic
GTAACAGTAACACCACAACA+AGG 0.630031 1_2:-18756496 None:intergenic
TATGAATTTGAAGAATACCA+TGG 0.632125 1_2:+18756689 Msa0060850:CDS
TTCAAAGGACAACTTCGAAG+TGG 0.633281 1_2:+18763634 Msa0060850:three_prime_UTR
TACCATGGAAAATACTACCA+TGG 0.642877 1_2:+18756704 Msa0060850:CDS
AACATGATGAATCCTACCAA+TGG 0.652183 1_2:-18763728 None:intergenic
TCATATGTTGTAGATGAAGG+TGG 0.652423 1_2:+18756959 Msa0060850:CDS
ACCACAACAAGGGTTAAGGA+TGG 0.653699 1_2:-18756485 None:intergenic
TAACAGTAACACCACAACAA+GGG 0.655319 1_2:-18756495 None:intergenic
ACAACTCATTGGTTTCTGCG+TGG 0.663316 1_2:+18763759 Msa0060850:three_prime_UTR
AAGCATCTATCTATGTATGA+CGG 0.669443 1_2:+18763490 Msa0060850:three_prime_UTR
AAGGTACATCCTATCATGTG+AGG 0.681856 1_2:+18756643 Msa0060850:CDS
ATTTCGGTAGAATAGTTCAG+GGG 0.719678 1_2:-18764100 None:intergenic
AAAGACAGTCCTGAAAAGTG+TGG 0.730935 1_2:+18756614 Msa0060850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTAGAAAAAAATTG+AGG + chr1_2:18757636-18757655 Msa0060850:intron 10.0%
!!! TAATTTTAGAAAAAAATTGA+GGG + chr1_2:18757637-18757656 Msa0060850:intron 10.0%
!!! TCAATTTTTAAGAAATTTAT+TGG + chr1_2:18757668-18757687 Msa0060850:intron 10.0%
!!! CAATTTTTAAGAAATTTATT+GGG + chr1_2:18757669-18757688 Msa0060850:intron 10.0%
!!! AATTTTTAAGAAATTTATTG+GGG + chr1_2:18757670-18757689 Msa0060850:intron 10.0%
!!! ACAATTTGTTTATTATAATA+TGG + chr1_2:18758377-18758396 Msa0060850:intron 10.0%
!! AATATGAAGAAAAAAAATTA+AGG - chr1_2:18758412-18758431 None:intergenic 10.0%
!! AAAAAAAAAAGAAAATTGAA+AGG + chr1_2:18758892-18758911 Msa0060850:intron 10.0%
!!! TTTAATTTTCTTTAATAGTT+GGG + chr1_2:18759043-18759062 Msa0060850:intron 10.0%
!! ATAATATTAAAATAGATTAG+AGG + chr1_2:18760495-18760514 Msa0060850:intron 10.0%
!! TTAATTTATTTAGCTATTTA+AGG - chr1_2:18761180-18761199 None:intergenic 10.0%
!! ATTATATAAATAAGTATATG+CGG + chr1_2:18761237-18761256 Msa0060850:intron 10.0%
!! TTAATTGCAAAATTGAAATT+AGG + chr1_2:18757573-18757592 Msa0060850:intron 15.0%
!! TAATTGCAAAATTGAAATTA+GGG + chr1_2:18757574-18757593 Msa0060850:intron 15.0%
!!! TGTAAATTTCAAACTTTTTA+AGG + chr1_2:18757604-18757623 Msa0060850:intron 15.0%
!!! GTAAATTTCAAACTTTTTAA+GGG + chr1_2:18757605-18757624 Msa0060850:intron 15.0%
!!! TAAATTTCAAACTTTTTAAG+GGG + chr1_2:18757606-18757625 Msa0060850:intron 15.0%
!!! AATTTTAGAAAAAAATTGAG+GGG + chr1_2:18757638-18757657 Msa0060850:intron 15.0%
!!! ATTTTTCAAATTTTGCATTT+TGG - chr1_2:18757726-18757745 None:intergenic 15.0%
!! TCAAATTATTATCTAAACAA+CGG + chr1_2:18757858-18757877 Msa0060850:intron 15.0%
!! TGTTTAGATTAAATATGTAT+AGG + chr1_2:18758580-18758599 Msa0060850:intron 15.0%
!! GGTATTTAATCATATTAAAT+TGG + chr1_2:18758601-18758620 Msa0060850:intron 15.0%
!! TGATTATAATAATACATGTT+TGG - chr1_2:18758974-18758993 None:intergenic 15.0%
!!! CTTTAATTTTCTTTAATAGT+TGG + chr1_2:18759042-18759061 Msa0060850:intron 15.0%
!!! ATATATTTGTGTACATTTTT+GGG - chr1_2:18759420-18759439 None:intergenic 15.0%
!!! TATATATTTGTGTACATTTT+TGG - chr1_2:18759421-18759440 None:intergenic 15.0%
!!! TTTTAAACACAATTTAACTT+AGG + chr1_2:18759478-18759497 Msa0060850:intron 15.0%
!!! ACTTTTTTTTTAACAAATCT+AGG - chr1_2:18759547-18759566 None:intergenic 15.0%
!!! TATTCTATTAAGTAGTTTTT+AGG + chr1_2:18761143-18761162 Msa0060850:intron 15.0%
!! TTATATAAATAAGTATATGC+GGG + chr1_2:18761238-18761257 Msa0060850:intron 15.0%
!! TAATAATAATTCCATATATG+AGG + chr1_2:18761571-18761590 Msa0060850:intron 15.0%
!! ATTAATAATACAATGATACA+TGG - chr1_2:18763454-18763473 None:intergenic 15.0%
!! TTGTATTATTAATCTACAAA+TGG + chr1_2:18763461-18763480 Msa0060850:three_prime_UTR 15.0%
!! ATTCATAGTACAAAATCAAT+TGG - chr1_2:18756676-18756695 None:intergenic 20.0%
!! CAATAACGACTAAATAAAAT+TGG + chr1_2:18757308-18757327 Msa0060850:intron 20.0%
!!! CATTTATCAATACTTTTGTT+TGG + chr1_2:18757482-18757501 Msa0060850:intron 20.0%
!!! AATTTCATTGTCATCATTTT+TGG + chr1_2:18757519-18757538 Msa0060850:intron 20.0%
!!! ATTTCATTGTCATCATTTTT+GGG + chr1_2:18757520-18757539 Msa0060850:intron 20.0%
!!! TGAAAATTTTGGAAAATTTG+AGG + chr1_2:18757699-18757718 Msa0060850:intron 20.0%
!! TTGACAGGATAATATTTATA+AGG - chr1_2:18758184-18758203 None:intergenic 20.0%
!!! TGTCATTATTTTAGTTTTTG+GGG - chr1_2:18758648-18758667 None:intergenic 20.0%
!!! GTGTCATTATTTTAGTTTTT+GGG - chr1_2:18758649-18758668 None:intergenic 20.0%
!!! TGTGTCATTATTTTAGTTTT+TGG - chr1_2:18758650-18758669 None:intergenic 20.0%
!!! ATATGTACGTTTATTTTATG+AGG + chr1_2:18758855-18758874 Msa0060850:intron 20.0%
!! ATAATCATAGTTTCAAAACT+CGG - chr1_2:18759270-18759289 None:intergenic 20.0%
!! TAACTAGAAAATATACATGT+TGG + chr1_2:18759447-18759466 Msa0060850:intron 20.0%
!! ATTAAAATAGATTAGAGGAT+AGG + chr1_2:18760500-18760519 Msa0060850:intron 20.0%
!! ATTAATGAGATTGCTAAATA+TGG + chr1_2:18760671-18760690 Msa0060850:intron 20.0%
!! TTAATGAGATTGCTAAATAT+GGG + chr1_2:18760672-18760691 Msa0060850:intron 20.0%
!! ATCATTATTAGTCAACATTA+GGG - chr1_2:18761424-18761443 None:intergenic 20.0%
!! TAAATTATCATCCTCATATA+TGG - chr1_2:18761585-18761604 None:intergenic 20.0%
!! ATATGAGGATGATAATTTAT+TGG + chr1_2:18761586-18761605 Msa0060850:intron 20.0%
!! AAGATTATATGATATGCATA+TGG + chr1_2:18762031-18762050 Msa0060850:intron 20.0%
!! GCTAGAAAAATAAATAAATG+TGG + chr1_2:18762166-18762185 Msa0060850:intron 20.0%
!!! TTGTGACTTTTCTTTTAAAT+AGG - chr1_2:18762193-18762212 None:intergenic 20.0%
!!! TTTAAGTTATCATTTCCTAT+TGG - chr1_2:18762301-18762320 None:intergenic 20.0%
!!! ATTAATTTTCTCAATCGTTT+GGG - chr1_2:18762664-18762683 None:intergenic 20.0%
!!! AATTAATTTTCTCAATCGTT+TGG - chr1_2:18762665-18762684 None:intergenic 20.0%
!! TAAAATTAAAGTTGTGCATA+GGG + chr1_2:18762756-18762775 Msa0060850:intron 20.0%
!!! GAACTATTTTTACGTTTAAT+TGG + chr1_2:18762824-18762843 Msa0060850:intron 20.0%
!!! CAAAGTATGTTTTTATTCAA+TGG + chr1_2:18762986-18763005 Msa0060850:intron 20.0%
!! TCTTTATCTAATTTCCATTT+AGG + chr1_2:18763394-18763413 Msa0060850:intron 20.0%
!!! ATTGCTTTTAAATTTGTTCT+TGG + chr1_2:18763424-18763443 Msa0060850:exon 20.0%
! TATGAATTTGAAGAATACCA+TGG + chr1_2:18756689-18756708 Msa0060850:CDS 25.0%
!! ATTGTACATAGTATTTTCCA+TGG - chr1_2:18756724-18756743 None:intergenic 25.0%
!!! TTTTGTATCGATAATAGGTT+AGG - chr1_2:18756871-18756890 None:intergenic 25.0%
! AAATATTGAGTGAAGTTGTT+TGG - chr1_2:18757279-18757298 None:intergenic 25.0%
!! GGCAACTTTTATAATTTTGA+GGG + chr1_2:18757541-18757560 Msa0060850:intron 25.0%
!! GCAACTTTTATAATTTTGAG+GGG + chr1_2:18757542-18757561 Msa0060850:intron 25.0%
! TCCTAATTATTTGAGTAGTT+TGG + chr1_2:18758060-18758079 Msa0060850:intron 25.0%
! TCCAAACTACTCAAATAATT+AGG - chr1_2:18758064-18758083 None:intergenic 25.0%
! TAGTTGTATAATTGTCAAGA+TGG + chr1_2:18758097-18758116 Msa0060850:intron 25.0%
! AGTTGTATAATTGTCAAGAT+GGG + chr1_2:18758098-18758117 Msa0060850:intron 25.0%
! TTATCCTGTCAAAAAGTTAA+TGG + chr1_2:18758192-18758211 Msa0060850:intron 25.0%
! AAAGTTAATGGTCTTTATTC+AGG + chr1_2:18758204-18758223 Msa0060850:intron 25.0%
!! TAGAGCTTGACTTTATATTT+TGG + chr1_2:18758228-18758247 Msa0060850:intron 25.0%
!!! CATATGAGACAGTTTTAATA+TGG + chr1_2:18758267-18758286 Msa0060850:intron 25.0%
!!! CATAGTTTTAAAACTCGAAT+CGG + chr1_2:18758444-18758463 Msa0060850:intron 25.0%
! CATATTAAATTGGATTGAAC+CGG + chr1_2:18758611-18758630 Msa0060850:intron 25.0%
! GTCTATAAAACTATGTTTGT+TGG - chr1_2:18758697-18758716 None:intergenic 25.0%
! TAATAAATATTTCGACGAGA+TGG + chr1_2:18758926-18758945 Msa0060850:intron 25.0%
! TTAAGTTATGCTGTAAAAAG+TGG - chr1_2:18759093-18759112 None:intergenic 25.0%
!! AATATGTTCTTGTTTCAAAC+CGG + chr1_2:18759117-18759136 Msa0060850:intron 25.0%
! ATTGAAAAAGAAGATCTATC+AGG + chr1_2:18759370-18759389 Msa0060850:intron 25.0%
! GTTAATAACGTGTTATCTAA+AGG + chr1_2:18760054-18760073 Msa0060850:intron 25.0%
! TCATACATGATTTATCTGTA+TGG - chr1_2:18760430-18760449 None:intergenic 25.0%
! CAGATAAATCATGTATGAAA+AGG + chr1_2:18760432-18760451 Msa0060850:intron 25.0%
! AAATATGGGCAGAAAAATAA+TGG + chr1_2:18760686-18760705 Msa0060850:intron 25.0%
! AATATGGGCAGAAAAATAAT+GGG + chr1_2:18760687-18760706 Msa0060850:intron 25.0%
!! GAGGTCAATTCAAATATTTT+TGG + chr1_2:18760740-18760759 Msa0060850:intron 25.0%
!!! CCATAGTTTTATTTCAATTG+TGG - chr1_2:18761012-18761031 None:intergenic 25.0%
! CCACAATTGAAATAAAACTA+TGG + chr1_2:18761009-18761028 Msa0060850:intron 25.0%
! TATTACCCGCAAATTTAAAT+GGG - chr1_2:18761305-18761324 None:intergenic 25.0%
! CATCATTATTAGTCAACATT+AGG - chr1_2:18761425-18761444 None:intergenic 25.0%
! GTTGACTAATAATGATGAAA+TGG + chr1_2:18761428-18761447 Msa0060850:intron 25.0%
! CACTGAAGAAAAAGTTATTA+AGG + chr1_2:18761500-18761519 Msa0060850:intron 25.0%
!!! AGGACTAGGAATTTTAATTT+CGG - chr1_2:18761694-18761713 None:intergenic 25.0%
! AGTCCACATAAATAAAATAG+AGG + chr1_2:18761753-18761772 Msa0060850:intron 25.0%
!!! ACTCCTCTATTTTATTTATG+TGG - chr1_2:18761759-18761778 None:intergenic 25.0%
! ATTAAAGCTAGAATCAAAGA+TGG + chr1_2:18761901-18761920 Msa0060850:intron 25.0%
! ATTATATGATATGCATATGG+AGG + chr1_2:18762034-18762053 Msa0060850:intron 25.0%
! TTATATGATATGCATATGGA+GGG + chr1_2:18762035-18762054 Msa0060850:intron 25.0%
!! AAAGAAAAGTCACAACTTTT+AGG + chr1_2:18762198-18762217 Msa0060850:intron 25.0%
!! AAGAAAAGTCACAACTTTTA+GGG + chr1_2:18762199-18762218 Msa0060850:intron 25.0%
! AGTAAGATAGGATTAGAAAT+GGG - chr1_2:18762324-18762343 None:intergenic 25.0%
! CTTAAGTTATCATTTCCTAT+TGG - chr1_2:18762380-18762399 None:intergenic 25.0%
! GAAATGATAACTTAAGTTTC+TGG + chr1_2:18762384-18762403 Msa0060850:intron 25.0%
! GTCGTTAAAGAAAATTGATT+TGG - chr1_2:18762607-18762626 None:intergenic 25.0%
!! AAATCCAGTTCTAATTGATT+TGG - chr1_2:18762701-18762720 None:intergenic 25.0%
! GTAAAATTAAAGTTGTGCAT+AGG + chr1_2:18762755-18762774 Msa0060850:intron 25.0%
!!! CTATTTTTACGTTTAATTGG+TGG + chr1_2:18762827-18762846 Msa0060850:intron 25.0%
! CAACATAATGACTTAAGATA+AGG - chr1_2:18763180-18763199 None:intergenic 25.0%
!!! TAGTTTTGTCTTGAATTGTT+TGG - chr1_2:18763590-18763609 None:intergenic 25.0%
! AAACAATTCAAGACAAAACT+AGG + chr1_2:18763589-18763608 Msa0060850:three_prime_UTR 25.0%
! ATATATGAATTCATGCCAAA+TGG + chr1_2:18763802-18763821 Msa0060850:three_prime_UTR 25.0%
!!! TATTTTTCAAGTGATCCATT+TGG - chr1_2:18763820-18763839 None:intergenic 25.0%
! CAACTATATTCAATTTCTCT+TGG + chr1_2:18763883-18763902 Msa0060850:three_prime_UTR 25.0%
!! AATCCAAAAGTTTCTGATTT+TGG + chr1_2:18764003-18764022 Msa0060850:three_prime_UTR 25.0%
!! AAAGCTGATGTTTATAGTTT+TGG + chr1_2:18764141-18764160 Msa0060850:three_prime_UTR 25.0%
!! AAGCTGATGTTTATAGTTTT+GGG + chr1_2:18764142-18764161 Msa0060850:three_prime_UTR 25.0%
! TACAAATCATGAGATGAAAT+TGG + chr1_2:18764296-18764315 Msa0060850:three_prime_UTR 25.0%
!! TTTTATCCAAGAATATGTGT+TGG - chr1_2:18764642-18764661 None:intergenic 25.0%
! AAAGAGTTGGATATGAATTA+AGG + chr1_2:18764667-18764686 Msa0060850:three_prime_UTR 25.0%
ATATTCTCGTACAATGTAGA+TGG + chr1_2:18756521-18756540 Msa0060850:CDS 30.0%
ATTGAAATCCAATAGTCGTA+TGG - chr1_2:18756768-18756787 None:intergenic 30.0%
TAATGAAAAATAACGAGGGA+TGG - chr1_2:18756810-18756829 None:intergenic 30.0%
!!! ATCCCTCGTTATTTTTCATT+AGG + chr1_2:18756809-18756828 Msa0060850:intron 30.0%
!!! TCCCTCGTTATTTTTCATTA+GGG + chr1_2:18756810-18756829 Msa0060850:intron 30.0%
TCCCTAATGAAAAATAACGA+GGG - chr1_2:18756814-18756833 None:intergenic 30.0%
ATCCCTAATGAAAAATAACG+AGG - chr1_2:18756815-18756834 None:intergenic 30.0%
TATCGATAATAGGTTAGGTA+GGG - chr1_2:18756866-18756885 None:intergenic 30.0%
!! CTGGTTTTTGTATCGATAAT+AGG - chr1_2:18756876-18756895 None:intergenic 30.0%
TCGTCAATATATGATCAATC+TGG - chr1_2:18756895-18756914 None:intergenic 30.0%
GAATGTTGATATGTACGATT+TGG - chr1_2:18756941-18756960 None:intergenic 30.0%
CATTCATATGTTGTAGATGA+AGG + chr1_2:18756956-18756975 Msa0060850:CDS 30.0%
AGTTTATGTTTCTCACATCT+TGG + chr1_2:18757089-18757108 Msa0060850:intron 30.0%
CAACAATAACATTTCTTGCA+CGG + chr1_2:18757129-18757148 Msa0060850:CDS 30.0%
CAAATCCATAAGACATCATA+CGG - chr1_2:18757162-18757181 None:intergenic 30.0%
! CTTATGGATTTGAAGTATCT+TGG + chr1_2:18757170-18757189 Msa0060850:intron 30.0%
CTCAATAGTCTTTGTAAAGA+TGG + chr1_2:18757193-18757212 Msa0060850:CDS 30.0%
ATAGTCTTTGTAAAGATGGT+TGG + chr1_2:18757197-18757216 Msa0060850:CDS 30.0%
! GGGCAACTTTTATAATTTTG+AGG + chr1_2:18757540-18757559 Msa0060850:intron 30.0%
! TGGGGTCAAATTGAAAATTT+TGG + chr1_2:18757688-18757707 Msa0060850:intron 30.0%
ACATACACTTAGAGTATGTT+TGG - chr1_2:18757928-18757947 None:intergenic 30.0%
! AAGACCATTAACTTTTTGAC+AGG - chr1_2:18758199-18758218 None:intergenic 30.0%
!! GACAGTTTTAATATGGTCAT+TGG + chr1_2:18758274-18758293 Msa0060850:intron 30.0%
!!! CGATTCGAGTTTTAAAACTA+TGG - chr1_2:18758446-18758465 None:intergenic 30.0%
AAAAACCCATAGTGTTTAAG+TGG + chr1_2:18759015-18759034 Msa0060850:intron 30.0%
GAAAACCACTTAAACACTAT+GGG - chr1_2:18759023-18759042 None:intergenic 30.0%
AGAAAACCACTTAAACACTA+TGG - chr1_2:18759024-18759043 None:intergenic 30.0%
TATCCCTTACTCTAACAAAT+AGG - chr1_2:18759318-18759337 None:intergenic 30.0%
TCTAAGAAAACTGAGATCAA+CGG - chr1_2:18759351-18759370 None:intergenic 30.0%
! AAATCTAGGATAGCTAACTT+AGG - chr1_2:18759533-18759552 None:intergenic 30.0%
! AAAAAAAAGTTAGCTCTCCT+AGG + chr1_2:18759557-18759576 Msa0060850:intron 30.0%
! AAAAAAAGTTAGCTCTCCTA+GGG + chr1_2:18759558-18759577 Msa0060850:intron 30.0%
TAGTGATCACAACCATAAAT+AGG - chr1_2:18759688-18759707 None:intergenic 30.0%
!! GATAAGCAGCTTTGAAAATT+CGG - chr1_2:18759749-18759768 None:intergenic 30.0%
CACAAAATCAAAGCAAGATA+AGG - chr1_2:18759804-18759823 None:intergenic 30.0%
! TAAAGGTATGGTTGTTATAC+CGG + chr1_2:18759987-18760006 Msa0060850:intron 30.0%
ACACGTTATTAACATCAAGT+TGG - chr1_2:18760047-18760066 None:intergenic 30.0%
TTTGTGTTATCATACATCCA+GGG - chr1_2:18760081-18760100 None:intergenic 30.0%
ATTTGTGTTATCATACATCC+AGG - chr1_2:18760082-18760101 None:intergenic 30.0%
GATATTCAAAATATTGCACC+AGG + chr1_2:18760105-18760124 Msa0060850:intron 30.0%
!!! TTTTTCACCGTTGATGATTT+CGG - chr1_2:18760138-18760157 None:intergenic 30.0%
AATCATCAACGGTGAAAAAT+TGG + chr1_2:18760139-18760158 Msa0060850:intron 30.0%
ACGGTGAAAAATTGGATATA+TGG + chr1_2:18760147-18760166 Msa0060850:intron 30.0%
CGGTGAAAAATTGGATATAT+GGG + chr1_2:18760148-18760167 Msa0060850:intron 30.0%
TATGCATGATAACAACAAGA+AGG - chr1_2:18760187-18760206 None:intergenic 30.0%
ACGTTCAAATCTTTCTTCAA+AGG - chr1_2:18760323-18760342 None:intergenic 30.0%
TGAAGAAAGATTTGAACGTT+CGG + chr1_2:18760324-18760343 Msa0060850:intron 30.0%
! GAAAAGGTTTGATTTAGAGA+AGG + chr1_2:18760448-18760467 Msa0060850:intron 30.0%
! TTTGATTTAGAGAAGGATGA+TGG + chr1_2:18760455-18760474 Msa0060850:intron 30.0%
ATATGGGCAGAAAAATAATG+GGG + chr1_2:18760688-18760707 Msa0060850:intron 30.0%
! TCTTTTCATAGTTAAAGTGC+GGG - chr1_2:18760978-18760997 None:intergenic 30.0%
! GTCTTTTCATAGTTAAAGTG+CGG - chr1_2:18760979-18760998 None:intergenic 30.0%
!!! TGCTGGCATACATTTTTTTA+AGG - chr1_2:18761111-18761130 None:intergenic 30.0%
TTAAAAAAATGTATGCCAGC+AGG + chr1_2:18761110-18761129 Msa0060850:intron 30.0%
ATTTAAATGGGTATGGGTAT+GGG - chr1_2:18761293-18761312 None:intergenic 30.0%
AATTTAAATGGGTATGGGTA+TGG - chr1_2:18761294-18761313 None:intergenic 30.0%
GTATTACCCGCAAATTTAAA+TGG - chr1_2:18761306-18761325 None:intergenic 30.0%
TTATTAGTCAACATTAGGGA+TGG - chr1_2:18761420-18761439 None:intergenic 30.0%
GACTAATAATGATGAAATGG+AGG + chr1_2:18761431-18761450 Msa0060850:intron 30.0%
AGGAAGAAAATAATGCTGAT+GGG + chr1_2:18761451-18761470 Msa0060850:intron 30.0%
! AGAGGAGTTTCGTTATATTT+TGG + chr1_2:18761771-18761790 Msa0060850:intron 30.0%
! GAGGAGTTTCGTTATATTTT+GGG + chr1_2:18761772-18761791 Msa0060850:intron 30.0%
TATATGATATGCATATGGAG+GGG + chr1_2:18762036-18762055 Msa0060850:intron 30.0%
GAGTAAGATAGGATTAGAAA+TGG - chr1_2:18762325-18762344 None:intergenic 30.0%
! ATGATAACTTAAGTTTCTGG+TGG + chr1_2:18762387-18762406 Msa0060850:intron 30.0%
!! TGATAACTTAAGTTTCTGGT+GGG + chr1_2:18762388-18762407 Msa0060850:intron 30.0%
CGTTGGAATTAATATCGATA+GGG - chr1_2:18762566-18762585 None:intergenic 30.0%
TCGTTGGAATTAATATCGAT+AGG - chr1_2:18762567-18762586 None:intergenic 30.0%
! GCAAGAAACAATTTTATCGT+TGG - chr1_2:18762583-18762602 None:intergenic 30.0%
TGTTCCAAATCAATTAGAAC+TGG + chr1_2:18762694-18762713 Msa0060850:intron 30.0%
GTACCTTTCAATATTTACCT+AGG + chr1_2:18762910-18762929 Msa0060850:intron 30.0%
CTACCTAGGTAAATATTGAA+AGG - chr1_2:18762916-18762935 None:intergenic 30.0%
CTTTCAATATTTACCTAGGT+AGG + chr1_2:18762914-18762933 Msa0060850:intron 30.0%
TAGCAAACAATTCTCTAGTT+TGG - chr1_2:18763064-18763083 None:intergenic 30.0%
AACGTACACAAAACATAACA+TGG - chr1_2:18763088-18763107 None:intergenic 30.0%
! CATCAAAGGCCATAATTTTT+CGG - chr1_2:18763121-18763140 None:intergenic 30.0%
AAAATGATCTCGAGTTACAT+AGG + chr1_2:18763144-18763163 Msa0060850:intron 30.0%
TATTAATCTACAAATGGCGA+CGG + chr1_2:18763467-18763486 Msa0060850:three_prime_UTR 30.0%
AAGCATCTATCTATGTATGA+CGG + chr1_2:18763490-18763509 Msa0060850:three_prime_UTR 30.0%
!! CTTTGTAAGAGTACCTTATA+GGG - chr1_2:18763552-18763571 None:intergenic 30.0%
!! TCTTTGTAAGAGTACCTTAT+AGG - chr1_2:18763553-18763572 None:intergenic 30.0%
TCTTGTAGCAGTCAAATTAT+TGG + chr1_2:18763660-18763679 Msa0060850:three_prime_UTR 30.0%
ATTGACAAAATCTCGATCAT+TGG - chr1_2:18763698-18763717 None:intergenic 30.0%
TAGGATTCATCATGTTAATG+TGG + chr1_2:18763735-18763754 Msa0060850:three_prime_UTR 30.0%
ACTCAAGGAATAATTCTCTT+CGG - chr1_2:18763857-18763876 None:intergenic 30.0%
ATATTCAATTTCTCTTGGAG+TGG + chr1_2:18763888-18763907 Msa0060850:three_prime_UTR 30.0%
TCATCAAGAAGAATGTTATG+AGG - chr1_2:18763976-18763995 None:intergenic 30.0%
! AGTCCAAAATCAGAAACTTT+TGG - chr1_2:18764009-18764028 None:intergenic 30.0%
ACTGATCATAAACCCAAAAA+GGG - chr1_2:18764242-18764261 None:intergenic 30.0%
AACTGATCATAAACCCAAAA+AGG - chr1_2:18764243-18764262 None:intergenic 30.0%
GTTTATGATCAGTTACAAGA+TGG + chr1_2:18764249-18764268 Msa0060850:three_prime_UTR 30.0%
! TACATCAATAACTGATTCCA+AGG + chr1_2:18764518-18764537 Msa0060850:three_prime_UTR 30.0%
TAACCAAAACGAGATCAAAT+TGG - chr1_2:18764546-18764565 None:intergenic 30.0%
ATTCATATCCAACTCTTTGA+GGG - chr1_2:18764665-18764684 None:intergenic 30.0%
AATTCATATCCAACTCTTTG+AGG - chr1_2:18764666-18764685 None:intergenic 30.0%
TAACAGTAACACCACAACAA+GGG - chr1_2:18756498-18756517 None:intergenic 35.0%
ATCAAGAGTCATGTTCAAGA+AGG + chr1_2:18756555-18756574 Msa0060850:intron 35.0%
TACCATGGAAAATACTACCA+TGG + chr1_2:18756704-18756723 Msa0060850:CDS 35.0%
! TTCCATGGTAGTATTTTCCA+TGG - chr1_2:18756709-18756728 None:intergenic 35.0%
! GTATCGATAATAGGTTAGGT+AGG - chr1_2:18756867-18756886 None:intergenic 35.0%
TCATATGTTGTAGATGAAGG+TGG + chr1_2:18756959-18756978 Msa0060850:CDS 35.0%
GAGAACTCTTTCTATGTTGA+TGG + chr1_2:18757016-18757035 Msa0060850:CDS 35.0%
!! TCTTTCTATGTTGATGGCTA+TGG + chr1_2:18757022-18757041 Msa0060850:CDS 35.0%
ATCAACCGTATGATGTCTTA+TGG + chr1_2:18757154-18757173 Msa0060850:intron 35.0%
ATTGGAATGCACAAGTAGTT+AGG + chr1_2:18757326-18757345 Msa0060850:intron 35.0%
TTGGAATGCACAAGTAGTTA+GGG + chr1_2:18757327-18757346 Msa0060850:intron 35.0%
!! AATCTTTTAGACCGACTTTG+AGG + chr1_2:18757382-18757401 Msa0060850:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr1_2:18757890-18757909 None:intergenic 35.0%
ACTTAGAGTATGTTTGGATG+GGG - chr1_2:18757922-18757941 None:intergenic 35.0%
CACTTAGAGTATGTTTGGAT+GGG - chr1_2:18757923-18757942 None:intergenic 35.0%
ACACTTAGAGTATGTTTGGA+TGG - chr1_2:18757924-18757943 None:intergenic 35.0%
TCTAAGTGTATGTTTATCCG+TGG + chr1_2:18757935-18757954 Msa0060850:intron 35.0%
TCCGTGGAGAGAATTAATTA+TGG + chr1_2:18757951-18757970 Msa0060850:intron 35.0%
GCCATAATTAATTCTCTCCA+CGG - chr1_2:18757955-18757974 None:intergenic 35.0%
GTGGAGAGAATTAATTATGG+CGG + chr1_2:18757954-18757973 Msa0060850:intron 35.0%
AGTTATCTAATCGAGTCATC+TGG - chr1_2:18758557-18758576 None:intergenic 35.0%
GATGACTCGATTAGATAACT+TGG + chr1_2:18758557-18758576 Msa0060850:intron 35.0%
! ACGCCTATTTGTTAGAGTAA+GGG + chr1_2:18759312-18759331 Msa0060850:intron 35.0%
CTAAGAAAACTGAGATCAAC+GGG - chr1_2:18759350-18759369 None:intergenic 35.0%
AAGGCAAAAATCACTCACAA+GGG - chr1_2:18759626-18759645 None:intergenic 35.0%
!! TGAGTGATTTTTGCCTTGTT+TGG + chr1_2:18759629-18759648 Msa0060850:intron 35.0%
!!! CGCTTTGTTTTGCCTATTTA+TGG + chr1_2:18759673-18759692 Msa0060850:intron 35.0%
! CGGTTTCTGTTTACACTTTT+AGG - chr1_2:18759729-18759748 None:intergenic 35.0%
! GATTTTGTGCTTTATCCTGA+TGG + chr1_2:18759815-18759834 Msa0060850:intron 35.0%
GTTGTCAATCTGAACAATGA+GGG + chr1_2:18759837-18759856 Msa0060850:intron 35.0%
TTGTCAATCTGAACAATGAG+GGG + chr1_2:18759838-18759857 Msa0060850:intron 35.0%
CACATTAGGATCCATCTTAA+GGG - chr1_2:18759889-18759908 None:intergenic 35.0%
TCACATTAGGATCCATCTTA+AGG - chr1_2:18759890-18759909 None:intergenic 35.0%
TCCTAATGTGACTGAAATGA+TGG + chr1_2:18759899-18759918 Msa0060850:intron 35.0%
ACCATCATTTCAGTCACATT+AGG - chr1_2:18759903-18759922 None:intergenic 35.0%
CTAAGTGATCAGTCGTATAT+CGG + chr1_2:18759932-18759951 Msa0060850:intron 35.0%
ATAACAACCATACCTTTACC+TGG - chr1_2:18759985-18760004 None:intergenic 35.0%
!!! TTTTCACCGTTGATGATTTC+GGG - chr1_2:18760137-18760156 None:intergenic 35.0%
TGTTGTTATCATGCATACGA+AGG + chr1_2:18760190-18760209 Msa0060850:intron 35.0%
TTATCATGCATACGAAGGTT+GGG + chr1_2:18760195-18760214 Msa0060850:intron 35.0%
CAACAAGTACATGAGATTGA+AGG + chr1_2:18760277-18760296 Msa0060850:intron 35.0%
CAGTTCAAGTAAGAGAAACT+AGG + chr1_2:18760374-18760393 Msa0060850:intron 35.0%
!! TGCTTTTTGTGTGGAGAAAT+TGG + chr1_2:18760404-18760423 Msa0060850:intron 35.0%
!! GACTAAGTGTCGACAATAAT+GGG + chr1_2:18760645-18760664 Msa0060850:intron 35.0%
!! ACTAAGTGTCGACAATAATG+GGG + chr1_2:18760646-18760665 Msa0060850:intron 35.0%
TATGGGCAGAAAAATAATGG+GGG + chr1_2:18760689-18760708 Msa0060850:intron 35.0%
!!! TTTTTTACAAACGCGGGTAT+GGG - chr1_2:18760861-18760880 None:intergenic 35.0%
!!! ATTTTTTACAAACGCGGGTA+TGG - chr1_2:18760862-18760881 None:intergenic 35.0%
!!! ACAGGGATTTTTTACAAACG+CGG - chr1_2:18760868-18760887 None:intergenic 35.0%
ATAGTTAAAGTGCGGGTAAT+TGG - chr1_2:18760971-18760990 None:intergenic 35.0%
! AAATAAGTATATGCGGGTTG+CGG + chr1_2:18761244-18761263 Msa0060850:intron 35.0%
CCGCAAATTTAAATGGGTAT+GGG - chr1_2:18761299-18761318 None:intergenic 35.0%
CCCATACCCATTTAAATTTG+CGG + chr1_2:18761296-18761315 Msa0060850:intron 35.0%
CCATACCCATTTAAATTTGC+GGG + chr1_2:18761297-18761316 Msa0060850:intron 35.0%
TTAAATTTGCGGGTAATACC+CGG + chr1_2:18761307-18761326 Msa0060850:intron 35.0%
AAAAATACCCACAATGGGTA+GGG - chr1_2:18761366-18761385 None:intergenic 35.0%
AAAAAATACCCACAATGGGT+AGG - chr1_2:18761367-18761386 None:intergenic 35.0%
GAGGAAGAAAATAATGCTGA+TGG + chr1_2:18761450-18761469 Msa0060850:intron 35.0%
GGAAGAAAATAATGCTGATG+GGG + chr1_2:18761452-18761471 Msa0060850:intron 35.0%
GAAGAAAATAATGCTGATGG+GGG + chr1_2:18761453-18761472 Msa0060850:intron 35.0%
GAGGATGATAATTTATTGGC+AGG + chr1_2:18761590-18761609 Msa0060850:intron 35.0%
TTAATTTCGGAACTACACTG+AGG - chr1_2:18761681-18761700 None:intergenic 35.0%
CCTAGTCCTGTATTATAATC+CGG + chr1_2:18761705-18761724 Msa0060850:intron 35.0%
!! TCACTAAGAAAAAGAGCATC+CGG - chr1_2:18761727-18761746 None:intergenic 35.0%
AAGATGGCAACAACAATACT+TGG + chr1_2:18761917-18761936 Msa0060850:intron 35.0%
AACAATACTTGGTTACTGAC+AGG + chr1_2:18761928-18761947 Msa0060850:intron 35.0%
! TGGTTACTGACAGGTTTTTA+CGG + chr1_2:18761937-18761956 Msa0060850:intron 35.0%
! GGTTTTTACGGTTATCTAGA+AGG + chr1_2:18761949-18761968 Msa0060850:intron 35.0%
! TTTTACGGTTATCTAGAAGG+CGG + chr1_2:18761952-18761971 Msa0060850:intron 35.0%
! AAACTCTTCTGGTTAATCCA+CGG + chr1_2:18761984-18762003 Msa0060850:intron 35.0%
!! ATTTATTTTTCTAGCCGAGC+AGG - chr1_2:18762161-18762180 None:intergenic 35.0%
TAATAGAGGGTGAGTAAGAT+AGG - chr1_2:18762336-18762355 None:intergenic 35.0%
!! ACAGCGGATTGAATAATAGA+GGG - chr1_2:18762349-18762368 None:intergenic 35.0%
!! AACAGCGGATTGAATAATAG+AGG - chr1_2:18762350-18762369 None:intergenic 35.0%
CTATTATTCAATCCGCTGTT+TGG + chr1_2:18762350-18762369 Msa0060850:intron 35.0%
TGAAGAAACGTAGATGCAAT+GGG - chr1_2:18762506-18762525 None:intergenic 35.0%
ATGAAGAAACGTAGATGCAA+TGG - chr1_2:18762507-18762526 None:intergenic 35.0%
AAAGTTGTGCATAGGGAAAT+TGG + chr1_2:18762763-18762782 Msa0060850:intron 35.0%
TTGCAGGATCCGAAAAATTA+TGG + chr1_2:18763109-18763128 Msa0060850:intron 35.0%
CGAAAAATTATGGCCTTTGA+TGG + chr1_2:18763119-18763138 Msa0060850:intron 35.0%
!! GAGATCATTTTGACCATCAA+AGG - chr1_2:18763135-18763154 None:intergenic 35.0%
AAGCAATCAACTCACCTAAA+TGG - chr1_2:18763411-18763430 None:intergenic 35.0%
ACAATAGCATCATCCCTATA+AGG + chr1_2:18763536-18763555 Msa0060850:three_prime_UTR 35.0%
! GGTTATGGATCTGTTTTCAA+AGG + chr1_2:18763619-18763638 Msa0060850:three_prime_UTR 35.0%
AAAATCTCGATCATTGGACT+TGG - chr1_2:18763692-18763711 None:intergenic 35.0%
AACATGATGAATCCTACCAA+TGG - chr1_2:18763731-18763750 None:intergenic 35.0%
GTTAATGTGGTACAACTCAT+TGG + chr1_2:18763748-18763767 Msa0060850:three_prime_UTR 35.0%
ATATAGTTGTTCGCAACTCA+AGG - chr1_2:18763872-18763891 None:intergenic 35.0%
! GACACAATGCTTTTATCTGT+AGG - chr1_2:18764045-18764064 None:intergenic 35.0%
ATTTCGGTAGAATAGTTCAG+GGG - chr1_2:18764103-18764122 None:intergenic 35.0%
CATTTCGGTAGAATAGTTCA+GGG - chr1_2:18764104-18764123 None:intergenic 35.0%
ACATTTCGGTAGAATAGTTC+AGG - chr1_2:18764105-18764124 None:intergenic 35.0%
GAACTATTCTACCGAAATGT+CGG + chr1_2:18764105-18764124 Msa0060850:three_prime_UTR 35.0%
! AAGATATTGTGCCGACATTT+CGG - chr1_2:18764119-18764138 None:intergenic 35.0%
!!! TAGTTTTGGGATGTTGTTGA+TGG + chr1_2:18764155-18764174 Msa0060850:three_prime_UTR 35.0%
AAGGAAGAACTTGGATGTAT+TGG + chr1_2:18764191-18764210 Msa0060850:three_prime_UTR 35.0%
! CCAGGTTTATTTCCCTTTTT+GGG + chr1_2:18764227-18764246 Msa0060850:three_prime_UTR 35.0%
GGCAAAGAAAATGATGATTG+TGG + chr1_2:18764317-18764336 Msa0060850:three_prime_UTR 35.0%
! AAATGATGATTGTGGCTTTG+TGG + chr1_2:18764325-18764344 Msa0060850:three_prime_UTR 35.0%
ATCTCCAACACTTTATCCAT+TGG - chr1_2:18764381-18764400 None:intergenic 35.0%
GTTAGTTCATTGTATTCCTC+TGG + chr1_2:18764495-18764514 Msa0060850:three_prime_UTR 35.0%
ATCAGTTATTGATGTACCAG+AGG - chr1_2:18764514-18764533 None:intergenic 35.0%
! GAACCAATTTGATCTCGTTT+TGG + chr1_2:18764540-18764559 Msa0060850:three_prime_UTR 35.0%
TACGTACCAACACATATTCT+TGG + chr1_2:18764633-18764652 Msa0060850:three_prime_UTR 35.0%
TAACACCACAACAAGGGTTA+AGG - chr1_2:18756492-18756511 None:intergenic 40.0%
GTAACAGTAACACCACAACA+AGG - chr1_2:18756499-18756518 None:intergenic 40.0%
AAAGACAGTCCTGAAAAGTG+TGG + chr1_2:18756614-18756633 Msa0060850:CDS 40.0%
! CTTTTGTCACCACACTTTTC+AGG - chr1_2:18756626-18756645 None:intergenic 40.0%
! CTGAAAAGTGTGGTGACAAA+AGG + chr1_2:18756624-18756643 Msa0060850:CDS 40.0%
AAGGTACATCCTATCATGTG+AGG + chr1_2:18756643-18756662 Msa0060850:CDS 40.0%
GGTTATTGTCCTCACATGAT+AGG - chr1_2:18756655-18756674 None:intergenic 40.0%
CAACTTCACCATACGACTAT+TGG + chr1_2:18756757-18756776 Msa0060850:CDS 40.0%
ACGAGGGATGGAATTATTAG+AGG - chr1_2:18756798-18756817 None:intergenic 40.0%
TGGCTATGGCAAAACTCTTT+CGG + chr1_2:18757036-18757055 Msa0060850:CDS 40.0%
ACATCTTGGTCTCTTGAAGA+TGG + chr1_2:18757103-18757122 Msa0060850:CDS 40.0%
! GTTGTTTGGAGCAAATTACC+TGG - chr1_2:18757265-18757284 None:intergenic 40.0%
TCCTCAAAACACCTCAAAGT+CGG - chr1_2:18757396-18757415 None:intergenic 40.0%
CTTAGAGTATGTTTGGATGG+GGG - chr1_2:18757921-18757940 None:intergenic 40.0%
!! TGAGTTGATGGTCAAACCAT+CGG + chr1_2:18758495-18758514 Msa0060850:intron 40.0%
TGGTTCAACAATTAACCCGA+TGG - chr1_2:18758514-18758533 None:intergenic 40.0%
GGGTTAATTGTTGAACCACA+TGG + chr1_2:18758516-18758535 Msa0060850:intron 40.0%
TTTGATCTGATTCAGCCATG+TGG - chr1_2:18758534-18758553 None:intergenic 40.0%
TATGCTGTAAAAAGTGGCGT+TGG - chr1_2:18759087-18759106 None:intergenic 40.0%
AAATAGGCGTGGAAGATTGA+TGG - chr1_2:18759302-18759321 None:intergenic 40.0%
CTTACTCTAACAAATAGGCG+TGG - chr1_2:18759313-18759332 None:intergenic 40.0%
! CACGCCTATTTGTTAGAGTA+AGG + chr1_2:18759311-18759330 Msa0060850:intron 40.0%
AGAGATGCGTAGAAAACATG+GGG - chr1_2:18759396-18759415 None:intergenic 40.0%
CAGAGATGCGTAGAAAACAT+GGG - chr1_2:18759397-18759416 None:intergenic 40.0%
CAAGGCAAAAATCACTCACA+AGG - chr1_2:18759627-18759646 None:intergenic 40.0%
!!! TGATTTTTGCCTTGTTTGGC+TGG + chr1_2:18759633-18759652 Msa0060850:intron 40.0%
! CAAAACAAAGCGTCTAGGTT+AGG - chr1_2:18759665-18759684 None:intergenic 40.0%
! ATAGGCAAAACAAAGCGTCT+AGG - chr1_2:18759670-18759689 None:intergenic 40.0%
TGTGGTATGAGAATGGTTTG+AGG - chr1_2:18759778-18759797 None:intergenic 40.0%
AAGGAACTGTGGTATGAGAA+TGG - chr1_2:18759785-18759804 None:intergenic 40.0%
CAAAGCAAGATAAGGAACTG+TGG - chr1_2:18759796-18759815 None:intergenic 40.0%
TGTTCAGATTGACAACCATC+AGG - chr1_2:18759833-18759852 None:intergenic 40.0%
GGTTGTCAATCTGAACAATG+AGG + chr1_2:18759836-18759855 Msa0060850:intron 40.0%
GTATATCGGCATTCACTTCT+GGG + chr1_2:18759946-18759965 Msa0060850:intron 40.0%
AGAAGTCCCGAAATCATCAA+CGG + chr1_2:18760128-18760147 Msa0060850:intron 40.0%
GATATATGGGTGCAAGTTCA+TGG + chr1_2:18760161-18760180 Msa0060850:intron 40.0%
GTTATCATGCATACGAAGGT+TGG + chr1_2:18760194-18760213 Msa0060850:intron 40.0%
!!! GGTGTTTTCTGCTTTTTGTG+TGG + chr1_2:18760395-18760414 Msa0060850:intron 40.0%
!! ATGATTGCACCACCACTTTT+GGG - chr1_2:18760559-18760578 None:intergenic 40.0%
! AAAAGTGGTGGTGCAATCAT+CGG + chr1_2:18760559-18760578 Msa0060850:intron 40.0%
CATAGCTCGACAAACAATCA+AGG + chr1_2:18760589-18760608 Msa0060850:intron 40.0%
!! CAATCAAGGAGGCATTAATG+AGG + chr1_2:18760603-18760622 Msa0060850:intron 40.0%
!! CGACTAAGTGTCGACAATAA+TGG + chr1_2:18760644-18760663 Msa0060850:intron 40.0%
TATGTCATCTGCTGTTCATG+AGG + chr1_2:18760721-18760740 Msa0060850:intron 40.0%
AAACATTCCGAATTCCTCTG+TGG + chr1_2:18760763-18760782 Msa0060850:intron 40.0%
! TACTGGAACATTGATGGCAA+TGG + chr1_2:18760802-18760821 Msa0060850:intron 40.0%
! ACTGGAACATTGATGGCAAT+GGG + chr1_2:18760803-18760822 Msa0060850:intron 40.0%
! TTTTTACAAACGCGGGTATG+GGG - chr1_2:18760860-18760879 None:intergenic 40.0%
!!! CAGGGATTTTTTACAAACGC+GGG - chr1_2:18760867-18760886 None:intergenic 40.0%
AAAAAATGTATGCCAGCAGG+AGG + chr1_2:18761113-18761132 Msa0060850:intron 40.0%
AAAAATGTATGCCAGCAGGA+GGG + chr1_2:18761114-18761133 Msa0060850:intron 40.0%
! AATAAGTATATGCGGGTTGC+GGG + chr1_2:18761245-18761264 Msa0060850:intron 40.0%
CCCGCAAATTTAAATGGGTA+TGG - chr1_2:18761300-18761319 None:intergenic 40.0%
GGGTAAAACTCCGCTTTAAT+GGG - chr1_2:18761346-18761365 None:intergenic 40.0%
AGGGTAAAACTCCGCTTTAA+TGG - chr1_2:18761347-18761366 None:intergenic 40.0%
! AGTTTTACCCTACCCATTGT+GGG + chr1_2:18761356-18761375 Msa0060850:intron 40.0%
CCGCAAAAAATACCCACAAT+GGG - chr1_2:18761371-18761390 None:intergenic 40.0%
!!! CCCATTGTGGGTATTTTTTG+CGG + chr1_2:18761368-18761387 Msa0060850:intron 40.0%
!!! CCATTGTGGGTATTTTTTGC+GGG + chr1_2:18761369-18761388 Msa0060850:intron 40.0%
TCAACATTAGGGATGGCAAT+TGG - chr1_2:18761413-18761432 None:intergenic 40.0%
CCGGATTATAATACAGGACT+AGG - chr1_2:18761708-18761727 None:intergenic 40.0%
GAGCATCCGGATTATAATAC+AGG - chr1_2:18761714-18761733 None:intergenic 40.0%
! TGTTTTGCTCGAGATAGAGT+AGG + chr1_2:18761805-18761824 Msa0060850:intron 40.0%
!!! GTGGCGATATTACGCTTTTT+TGG + chr1_2:18761833-18761852 Msa0060850:intron 40.0%
GGTAGAAGAAGAAACTCTTC+TGG + chr1_2:18761973-18761992 Msa0060850:intron 40.0%
TTATTGCTTGACGAAAACCG+TGG - chr1_2:18762004-18762023 None:intergenic 40.0%
ACTTCTCATCCACTGTTTGT+GGG - chr1_2:18762094-18762113 None:intergenic 40.0%
AACTTCTCATCCACTGTTTG+TGG - chr1_2:18762095-18762114 None:intergenic 40.0%
! GAGCTTTAGCAAATGAAGCT+TGG + chr1_2:18762120-18762139 Msa0060850:intron 40.0%
!!! CACAACTTTTAGGGTTCGTT+TGG + chr1_2:18762208-18762227 Msa0060850:intron 40.0%
!! GTTCGTTTGGTGCATAAGAT+AGG + chr1_2:18762221-18762240 Msa0060850:intron 40.0%
TCCTAATTCAATCCGCTGTT+TGG + chr1_2:18762271-18762290 Msa0060850:intron 40.0%
!! ACCAAACAGCGGATTGAATT+AGG - chr1_2:18762275-18762294 None:intergenic 40.0%
ATTGGCTGTTGCACATGAAT+TGG + chr1_2:18762781-18762800 Msa0060850:intron 40.0%
TTGGCTGTTGCACATGAATT+GGG + chr1_2:18762782-18762801 Msa0060850:intron 40.0%
!! ATGTCTTGCATTGACTTTCG+AGG - chr1_2:18762953-18762972 None:intergenic 40.0%
! TGTTTTGTGTACGTTCTTGC+AGG + chr1_2:18763093-18763112 Msa0060850:intron 40.0%
TTCAAGACAAAACTAGGCAG+TGG + chr1_2:18763595-18763614 Msa0060850:three_prime_UTR 40.0%
TTCAAAGGACAACTTCGAAG+TGG + chr1_2:18763634-18763653 Msa0060850:three_prime_UTR 40.0%
GTCAATGAAGTTGCTACCAT+TGG + chr1_2:18763712-18763731 Msa0060850:three_prime_UTR 40.0%
ATGAAGTTGCTACCATTGGT+AGG + chr1_2:18763716-18763735 Msa0060850:three_prime_UTR 40.0%
! GGCATTGAGTACTTGCATAA+TGG + chr1_2:18763916-18763935 Msa0060850:three_prime_UTR 40.0%
AAGAGGAACCATTGGATACA+TGG + chr1_2:18764077-18764096 Msa0060850:three_prime_UTR 40.0%
TGATGGAGATGGCAAATAGA+AGG + chr1_2:18764172-18764191 Msa0060850:three_prime_UTR 40.0%
GGCAAATAGAAGGAAGAACT+TGG + chr1_2:18764182-18764201 Msa0060850:three_prime_UTR 40.0%
! GCCAGGTTTATTTCCCTTTT+TGG + chr1_2:18764226-18764245 Msa0060850:three_prime_UTR 40.0%
CCCAAAAAGGGAAATAAACC+TGG - chr1_2:18764230-18764249 None:intergenic 40.0%
TCCTCCAATGGATAAAGTGT+TGG + chr1_2:18764374-18764393 Msa0060850:three_prime_UTR 40.0%
TCCAACACTTTATCCATTGG+AGG - chr1_2:18764378-18764397 None:intergenic 40.0%
! ACGAGATCAAATTGGTTCCT+TGG - chr1_2:18764538-18764557 None:intergenic 40.0%
GGATAAAACCCTCAAAGAGT+TGG + chr1_2:18764654-18764673 Msa0060850:three_prime_UTR 40.0%
ACCACAACAAGGGTTAAGGA+TGG - chr1_2:18756488-18756507 None:intergenic 45.0%
GAGTCATGTTCAAGAAGGTG+CGG + chr1_2:18756560-18756579 Msa0060850:intron 45.0%
ATAACATCAGCCACCCTTTC+CGG + chr1_2:18756588-18756607 Msa0060850:CDS 45.0%
TTTCAGGACTGTCTTTCAGC+CGG - chr1_2:18756610-18756629 None:intergenic 45.0%
TGGCAAAACTCTTTCGGAGT+TGG + chr1_2:18757042-18757061 Msa0060850:CDS 45.0%
GGCAAAACTCTTTCGGAGTT+GGG + chr1_2:18757043-18757062 Msa0060850:CDS 45.0%
GCAAAACTCTTTCGGAGTTG+GGG + chr1_2:18757044-18757063 Msa0060850:CDS 45.0%
! GTTTGGAGCAAATTACCTGG+AGG - chr1_2:18757262-18757281 None:intergenic 45.0%
AGATACTTCCCTAGCTCAGT+TGG - chr1_2:18757358-18757377 None:intergenic 45.0%
!!! ACCGACTTTGAGGTGTTTTG+AGG + chr1_2:18757392-18757411 Msa0060850:intron 45.0%
!!! GACTTTGAGGTGTTTTGAGG+AGG + chr1_2:18757395-18757414 Msa0060850:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr1_2:18757908-18757927 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr1_2:18757909-18757928 None:intergenic 45.0%
AATCGGTCATGACTCGACAT+AGG + chr1_2:18758461-18758480 Msa0060850:intron 45.0%
TCATGACTCGACATAGGCAA+TGG + chr1_2:18758467-18758486 Msa0060850:intron 45.0%
CATGACTCGACATAGGCAAT+GGG + chr1_2:18758468-18758487 Msa0060850:intron 45.0%
!! GAGTTGATGGTCAAACCATC+GGG + chr1_2:18758496-18758515 Msa0060850:intron 45.0%
!! CTGTAAAAAGTGGCGTTGGT+GGG - chr1_2:18759083-18759102 None:intergenic 45.0%
AACCGGTCCAACCAAATACT+CGG + chr1_2:18759134-18759153 Msa0060850:intron 45.0%
! TTTCAAAACTCGGCTCGAAC+CGG - chr1_2:18759260-18759279 None:intergenic 45.0%
GCAGAGATGCGTAGAAAACA+TGG - chr1_2:18759398-18759417 None:intergenic 45.0%
GCAAAAATCACTCACAAGGG+CGG - chr1_2:18759623-18759642 None:intergenic 45.0%
GGGCTAACGATTAGTGAAGA+GGG + chr1_2:18759858-18759877 Msa0060850:intron 45.0%
! AGAGGGTATGACCCTTAAGA+TGG + chr1_2:18759875-18759894 Msa0060850:intron 45.0%
CGTATATCGGCATTCACTTC+TGG + chr1_2:18759945-18759964 Msa0060850:intron 45.0%
ATTCACTTCTGGGTGAGATG+TGG + chr1_2:18759956-18759975 Msa0060850:intron 45.0%
GAGATGTGGAAACCAGGTAA+AGG + chr1_2:18759970-18759989 Msa0060850:intron 45.0%
GTGGAAACCAGGTAAAGGTA+TGG + chr1_2:18759975-18759994 Msa0060850:intron 45.0%
AGGTATGGTTGTTATACCGG+TGG + chr1_2:18759990-18760009 Msa0060850:intron 45.0%
! AGGAACTTGTTCTGATCCAC+CGG - chr1_2:18760009-18760028 None:intergenic 45.0%
ACGTGTTATCTAAAGGTCCC+TGG + chr1_2:18760061-18760080 Msa0060850:intron 45.0%
ATGCATACGAAGGTTGGGAT+GGG + chr1_2:18760200-18760219 Msa0060850:intron 45.0%
!! ATGGGCATTGACGCTTACTT+GGG + chr1_2:18760218-18760237 Msa0060850:intron 45.0%
GAAAGATTTGAACGTTCGGC+TGG + chr1_2:18760328-18760347 Msa0060850:intron 45.0%
! AGAGAAGGATGATGGTACTC+AGG + chr1_2:18760463-18760482 Msa0060850:intron 45.0%
! GAGAAGGATGATGGTACTCA+GGG + chr1_2:18760464-18760483 Msa0060850:intron 45.0%
GTGTACTCTTGACCCAAAAG+TGG + chr1_2:18760544-18760563 Msa0060850:intron 45.0%
TACTCTTGACCCAAAAGTGG+TGG + chr1_2:18760547-18760566 Msa0060850:intron 45.0%
! GATGATTGCACCACCACTTT+TGG - chr1_2:18760560-18760579 None:intergenic 45.0%
AGCTCGACAAACAATCAAGG+AGG + chr1_2:18760592-18760611 Msa0060850:intron 45.0%
TCCCTCTACTGGAACATTGA+TGG + chr1_2:18760796-18760815 Msa0060850:intron 45.0%
GCCATCAATGTTCCAGTAGA+GGG - chr1_2:18760800-18760819 None:intergenic 45.0%
TGCCATCAATGTTCCAGTAG+AGG - chr1_2:18760801-18760820 None:intergenic 45.0%
ACTGTAGTACCCTACCCATA+GGG - chr1_2:18760831-18760850 None:intergenic 45.0%
AGTTGTTGTCCACGAGGATA+CGG - chr1_2:18760899-18760918 None:intergenic 45.0%
CACTAAAGTTGTTGTCCACG+AGG - chr1_2:18760905-18760924 None:intergenic 45.0%
TAAAGTGCGGGTAATTGGTG+CGG - chr1_2:18760966-18760985 None:intergenic 45.0%
ATGGGTATGGGTATGGGTAA+CGG - chr1_2:18761287-18761306 None:intergenic 45.0%
! AAACTCCGCTTTAATGGGTC+CGG - chr1_2:18761341-18761360 None:intergenic 45.0%
! GAGTTTTACCCTACCCATTG+TGG + chr1_2:18761355-18761374 Msa0060850:intron 45.0%
CCCGCAAAAAATACCCACAA+TGG - chr1_2:18761372-18761391 None:intergenic 45.0%
CAATTGGACCCAGATCTGAT+GGG - chr1_2:18761397-18761416 None:intergenic 45.0%
AGGAAAGCGAAAGCTTCTAC+TGG + chr1_2:18761520-18761539 Msa0060850:intron 45.0%
GGAAAGCGAAAGCTTCTACT+GGG + chr1_2:18761521-18761540 Msa0060850:intron 45.0%
ATTGGCAGGACCTGACAATT+AGG + chr1_2:18761604-18761623 Msa0060850:intron 45.0%
ACCTGACAATTAGGCCTGTT+GGG + chr1_2:18761613-18761632 Msa0060850:intron 45.0%
CTTGTAAGTTGCAACTGACG+AGG + chr1_2:18761646-18761665 Msa0060850:intron 45.0%
GGTATCCTTTCACCTGGTTT+AGG + chr1_2:18762057-18762076 Msa0060850:intron 45.0%
AGACTCCTAAACCAGGTGAA+AGG - chr1_2:18762065-18762084 None:intergenic 45.0%
TTCACCTGGTTTAGGAGTCT+TGG + chr1_2:18762065-18762084 Msa0060850:intron 45.0%
CTTCTCATCCACTGTTTGTG+GGG - chr1_2:18762093-18762112 None:intergenic 45.0%
!! TATTTTTCTAGCCGAGCAGG+AGG - chr1_2:18762158-18762177 None:intergenic 45.0%
AGTCGAAGGGTAGATGCAAT+GGG - chr1_2:18762483-18762502 None:intergenic 45.0%
TAGATGCAATGGGAGTCGAA+GGG - chr1_2:18762473-18762492 None:intergenic 45.0%
TGGCTGTTGCACATGAATTG+GGG + chr1_2:18762783-18762802 Msa0060850:intron 45.0%
! GTTCGTGCAGATGGCTTTTA+TGG + chr1_2:18762877-18762896 Msa0060850:intron 45.0%
! TGCAGATGGCTTTTATGGTG+TGG + chr1_2:18762882-18762901 Msa0060850:intron 45.0%
! GCAGATGGCTTTTATGGTGT+GGG + chr1_2:18762883-18762902 Msa0060850:intron 45.0%
ACTTTCGAGGACTTGAGTGA+GGG - chr1_2:18762940-18762959 None:intergenic 45.0%
AAGACAAAACTAGGCAGTGG+AGG + chr1_2:18763598-18763617 Msa0060850:three_prime_UTR 45.0%
AAACTAGGCAGTGGAGGTTA+TGG + chr1_2:18763604-18763623 Msa0060850:three_prime_UTR 45.0%
!! ACAACTCATTGGTTTCTGCG+TGG + chr1_2:18763759-18763778 Msa0060850:three_prime_UTR 45.0%
! GTGTCATTAACTGCAGCAAG+AGG + chr1_2:18764060-18764079 Msa0060850:three_prime_UTR 45.0%
! TGGGATGTTGTTGATGGAGA+TGG + chr1_2:18764161-18764180 Msa0060850:three_prime_UTR 45.0%
ATTGGCTGATCAATCTAGCC+AGG + chr1_2:18764209-18764228 Msa0060850:three_prime_UTR 45.0%
CTTCTACGTCTTGTGCATCA+AGG - chr1_2:18764449-18764468 None:intergenic 45.0%
GCCATCCTTAACCCTTGTTG+TGG + chr1_2:18756484-18756503 Msa0060850:CDS 50.0%
GGAAAGGGTGGCTGATGTTA+TGG - chr1_2:18756589-18756608 None:intergenic 50.0%
GACTGTCTTTCAGCCGGAAA+GGG - chr1_2:18756604-18756623 None:intergenic 50.0%
AACAGTCAATGTCGACCTCC+AGG + chr1_2:18757244-18757263 Msa0060850:CDS 50.0%
AGGGTTCAACCAACTGAGCT+AGG + chr1_2:18757346-18757365 Msa0060850:intron 50.0%
GGGTTCAACCAACTGAGCTA+GGG + chr1_2:18757347-18757366 Msa0060850:intron 50.0%
! GCAATGGGTCACTGAGTTGA+TGG + chr1_2:18758483-18758502 Msa0060850:intron 50.0%
!!! TTTTGGGGTGATCGAGTCAC+CGG - chr1_2:18758633-18758652 None:intergenic 50.0%
! GCTGTAAAAAGTGGCGTTGG+TGG - chr1_2:18759084-18759103 None:intergenic 50.0%
GACCGAGTATTTGGTTGGAC+CGG - chr1_2:18759139-18759158 None:intergenic 50.0%
GACTCGACCGAGTATTTGGT+TGG - chr1_2:18759144-18759163 None:intergenic 50.0%
CAAATACTCGGTCGAGTCAC+CGG + chr1_2:18759146-18759165 Msa0060850:intron 50.0%
GGATGGGATTTGCAAACCCT+AGG - chr1_2:18759577-18759596 None:intergenic 50.0%
AGGAAAACGCCAGCCAAACA+AGG - chr1_2:18759645-18759664 None:intergenic 50.0%
GGGGCTAACGATTAGTGAAG+AGG + chr1_2:18759857-18759876 Msa0060850:intron 50.0%
!! CATCAAGTTGGTGCGCAAAC+TGG - chr1_2:18760035-18760054 None:intergenic 50.0%
GATGATTTCGGGACTTCTCC+TGG - chr1_2:18760126-18760145 None:intergenic 50.0%
CATGCATACGAAGGTTGGGA+TGG + chr1_2:18760199-18760218 Msa0060850:intron 50.0%
!! GATGGGCATTGACGCTTACT+TGG + chr1_2:18760217-18760236 Msa0060850:intron 50.0%
TTGAACGTTCGGCTGGATGA+AGG + chr1_2:18760335-18760354 Msa0060850:intron 50.0%
GTGGGAACCACAGAGGAATT+CGG - chr1_2:18760773-18760792 None:intergenic 50.0%
! GTTCCAGTAGAGGGAAGTGT+GGG - chr1_2:18760791-18760810 None:intergenic 50.0%
TGTTCCAGTAGAGGGAAGTG+TGG - chr1_2:18760792-18760811 None:intergenic 50.0%
TGATGGCAATGGGTACCCTA+TGG + chr1_2:18760813-18760832 Msa0060850:intron 50.0%
GATGGCAATGGGTACCCTAT+GGG + chr1_2:18760814-18760833 Msa0060850:intron 50.0%
CAATGGGTACCCTATGGGTA+GGG + chr1_2:18760819-18760838 Msa0060850:intron 50.0%
CACTGTAGTACCCTACCCAT+AGG - chr1_2:18760832-18760851 None:intergenic 50.0%
TGCCCTTTCCCATACCCTAT+GGG + chr1_2:18760923-18760942 Msa0060850:intron 50.0%
TGCCCATAGGGTATGGGAAA+GGG - chr1_2:18760928-18760947 None:intergenic 50.0%
! CTAAGGTGCCCATAGGGTAT+GGG - chr1_2:18760934-18760953 None:intergenic 50.0%
! ACTAAGGTGCCCATAGGGTA+TGG - chr1_2:18760935-18760954 None:intergenic 50.0%
! TAGGCACTAAGGTGCCCATA+GGG - chr1_2:18760940-18760959 None:intergenic 50.0%
! ATAGGCACTAAGGTGCCCAT+AGG - chr1_2:18760941-18760960 None:intergenic 50.0%
AAAGTGCGGGTAATTGGTGC+GGG - chr1_2:18760965-18760984 None:intergenic 50.0%
! AACTCCGCTTTAATGGGTCC+GGG - chr1_2:18761340-18761359 None:intergenic 50.0%
GCAATTGGACCCAGATCTGA+TGG - chr1_2:18761398-18761417 None:intergenic 50.0%
GACCTGACAATTAGGCCTGT+TGG + chr1_2:18761612-18761631 Msa0060850:intron 50.0%
TCCCAACAGGCCTAATTGTC+AGG - chr1_2:18761617-18761636 None:intergenic 50.0%
AATTAGGCCTGTTGGGAGTC+AGG + chr1_2:18761620-18761639 Msa0060850:intron 50.0%
AAGTTGCAACTGACGAGGTC+TGG + chr1_2:18761651-18761670 Msa0060850:intron 50.0%
AGTTGCAACTGACGAGGTCT+GGG + chr1_2:18761652-18761671 Msa0060850:intron 50.0%
GCTCGAGATAGAGTAGGTAG+AGG + chr1_2:18761811-18761830 Msa0060850:intron 50.0%
CGAGATAGAGTAGGTAGAGG+TGG + chr1_2:18761814-18761833 Msa0060850:intron 50.0%
GGTACCAAGACTCCTAAACC+AGG - chr1_2:18762072-18762091 None:intergenic 50.0%
TCTTGGTACCCCACAAACAG+TGG + chr1_2:18762082-18762101 Msa0060850:intron 50.0%
TGCGTCTATTTCCTCCTGCT+CGG + chr1_2:18762144-18762163 Msa0060850:intron 50.0%
CCTATTGGTGCACCAAACAG+CGG - chr1_2:18762286-18762305 None:intergenic 50.0%
CCTATTGGTGCACCAAACAG+CGG - chr1_2:18762286-18762305 None:intergenic 50.0%
GTAGATGCAATGGGAGTCGA+AGG - chr1_2:18762474-18762493 None:intergenic 50.0%
GAGTCGAAGGGTAGATGCAA+TGG - chr1_2:18762484-18762503 None:intergenic 50.0%
GTAGATGCAATGGGAGTCGA+AGG - chr1_2:18762474-18762493 None:intergenic 50.0%
GCACGAACAGACACAAGACA+CGG - chr1_2:18762865-18762884 None:intergenic 50.0%
CTTGTGTCTGTTCGTGCAGA+TGG + chr1_2:18762868-18762887 Msa0060850:intron 50.0%
GACTTTCGAGGACTTGAGTG+AGG - chr1_2:18762941-18762960 None:intergenic 50.0%
!! CTCATTGGTTTCTGCGTGGA+AGG + chr1_2:18763763-18763782 Msa0060850:three_prime_UTR 50.0%
ATTTCTCTTGGAGTGGCTCG+AGG + chr1_2:18763895-18763914 Msa0060850:three_prime_UTR 50.0%
ACTGCAGCAAGAGGAACCAT+TGG + chr1_2:18764069-18764088 Msa0060850:three_prime_UTR 50.0%
TTCAGGGGCCATGTATCCAA+TGG - chr1_2:18764088-18764107 None:intergenic 50.0%
ACCTAGTGATCGTCCTCCAA+TGG + chr1_2:18764362-18764381 Msa0060850:three_prime_UTR 50.0%
TCCATTGGAGGACGATCACT+AGG - chr1_2:18764366-18764385 None:intergenic 50.0%
GCATCAAGGTCAGGCTGATT+AGG - chr1_2:18764435-18764454 None:intergenic 50.0%
ACGTCTTGTGCATCAAGGTC+AGG - chr1_2:18764444-18764463 None:intergenic 50.0%
TGTCTTTCAGCCGGAAAGGG+TGG - chr1_2:18756601-18756620 None:intergenic 55.0%
GGACTGTCTTTCAGCCGGAA+AGG - chr1_2:18756605-18756624 None:intergenic 55.0%
TCGGAGTTGGGGTTGAGAGA+TGG + chr1_2:18757055-18757074 Msa0060850:CDS 55.0%
CGGAGTTGGGGTTGAGAGAT+GGG + chr1_2:18757056-18757075 Msa0060850:CDS 55.0%
CGGTGACTCGACCGAGTATT+TGG - chr1_2:18759148-18759167 None:intergenic 55.0%
!!! GTCGAGTCACCGGTTTTGAC+CGG + chr1_2:18759156-18759175 Msa0060850:intron 55.0%
CGGTGAGAACCGGTCAAAAC+CGG - chr1_2:18759168-18759187 None:intergenic 55.0%
! TCGGTTAGCTCGGTGAGAAC+CGG - chr1_2:18759178-18759197 None:intergenic 55.0%
CACCGAGCTAACCGATCCAA+AGG + chr1_2:18759183-18759202 Msa0060850:intron 55.0%
! GGCCTTTGGATCGGTTAGCT+CGG - chr1_2:18759188-18759207 None:intergenic 55.0%
GTTCGAGCAGGCCTTTGGAT+CGG - chr1_2:18759197-18759216 None:intergenic 55.0%
ATCCAAAGGCCTGCTCGAAC+CGG + chr1_2:18759197-18759216 Msa0060850:intron 55.0%
CTAGGAACCGGTGGATAGAC+CGG - chr1_2:18759219-18759238 None:intergenic 55.0%
!! GGACTGGTCGAACTAGGAAC+CGG - chr1_2:18759231-18759250 None:intergenic 55.0%
CTGGGTGAGATGTGGAAACC+AGG + chr1_2:18759964-18759983 Msa0060850:intron 55.0%
GTTGGTGCGCAAACTGGAAG+AGG - chr1_2:18760029-18760048 None:intergenic 55.0%
!! TTCGGCTGGATGAAGGTGCT+TGG + chr1_2:18760342-18760361 Msa0060850:intron 55.0%
!! TCGGCTGGATGAAGGTGCTT+GGG + chr1_2:18760343-18760362 Msa0060850:intron 55.0%
! AGGATGATGGTACTCAGGGC+TGG + chr1_2:18760468-18760487 Msa0060850:intron 55.0%
GGTGGTGCAATCATCGGAGT+TGG + chr1_2:18760565-18760584 Msa0060850:intron 55.0%
GTTCCCACACTTCCCTCTAC+TGG + chr1_2:18760785-18760804 Msa0060850:intron 55.0%
GCAATGGGTACCCTATGGGT+AGG + chr1_2:18760818-18760837 Msa0060850:intron 55.0%
TACAAACGCGGGTATGGGGA+AGG - chr1_2:18760856-18760875 None:intergenic 55.0%
AGGATACGGACTCGGGTACA+GGG - chr1_2:18760885-18760904 None:intergenic 55.0%
TGTCCACGAGGATACGGACT+CGG - chr1_2:18760893-18760912 None:intergenic 55.0%
GTGCCCTTTCCCATACCCTA+TGG + chr1_2:18760922-18760941 Msa0060850:intron 55.0%
GTGCCCATAGGGTATGGGAA+AGG - chr1_2:18760929-18760948 None:intergenic 55.0%
TGGTGCGGGTATAGGCACTA+AGG - chr1_2:18760951-18760970 None:intergenic 55.0%
CGGGTAATTGGTGCGGGTAT+AGG - chr1_2:18760959-18760978 None:intergenic 55.0%
TGTATGCCAGCAGGAGGGAT+CGG + chr1_2:18761119-18761138 Msa0060850:intron 55.0%
GAATATCCGATCCCTCCTGC+TGG - chr1_2:18761128-18761147 None:intergenic 55.0%
! TATATGCGGGTTGCGGGTCT+GGG + chr1_2:18761251-18761270 Msa0060850:intron 55.0%
GTAATACCCGGATCCAAGCC+CGG + chr1_2:18761319-18761338 Msa0060850:intron 55.0%
CAAGCCCGGACCCATTAAAG+CGG + chr1_2:18761333-18761352 Msa0060850:intron 55.0%
TTGCGGGTACCCATCAGATC+TGG + chr1_2:18761385-18761404 Msa0060850:intron 55.0%
TGCGGGTACCCATCAGATCT+GGG + chr1_2:18761386-18761405 Msa0060850:intron 55.0%
CAAGACTCCTGACTCCCAAC+AGG - chr1_2:18761630-18761649 None:intergenic 55.0%
!! TGGAGGGGTATCCTTTCACC+TGG + chr1_2:18762051-18762070 Msa0060850:intron 55.0%
!! CCGCTGTTTGGTGCACCAAT+AGG + chr1_2:18762283-18762302 Msa0060850:intron 55.0%
!! CCGCTGTTTGGTGCACCAAT+AGG + chr1_2:18762283-18762302 Msa0060850:intron 55.0%
GATGCAATGGGAGTCGAAGG+AGG - chr1_2:18762471-18762490 None:intergenic 55.0%
ACTTGAGTGAGGGCCTACCT+AGG - chr1_2:18762930-18762949 None:intergenic 55.0%
!! GTGGATAGACCGGTTCGAGC+AGG - chr1_2:18759209-18759228 None:intergenic 60.0%
GCTCGAACCGGTCTATCCAC+CGG + chr1_2:18759209-18759228 Msa0060850:intron 60.0%
CTGGTCGAACTAGGAACCGG+TGG - chr1_2:18759228-18759247 None:intergenic 60.0%
CCTAGTTCGACCAGTCCGAG+CGG + chr1_2:18759234-18759253 Msa0060850:intron 60.0%
GCTAAGACGGCGGGTAGGAT+GGG - chr1_2:18759593-18759612 None:intergenic 60.0%
AGCTAAGACGGCGGGTAGGA+TGG - chr1_2:18759594-18759613 None:intergenic 60.0%
ATCCTACCCGCCGTCTTAGC+TGG + chr1_2:18759593-18759612 Msa0060850:intron 60.0%
! GGGAAGTGTGGGAACCACAG+AGG - chr1_2:18760780-18760799 None:intergenic 60.0%
GAGGATACGGACTCGGGTAC+AGG - chr1_2:18760886-18760905 None:intergenic 60.0%
TACCCGAGTCCGTATCCTCG+TGG + chr1_2:18760887-18760906 Msa0060850:intron 60.0%
GTCCACGAGGATACGGACTC+GGG - chr1_2:18760892-18760911 None:intergenic 60.0%
! GTATATGCGGGTTGCGGGTC+TGG + chr1_2:18761250-18761269 Msa0060850:intron 60.0%
AATGGGTCCGGGCTTGGATC+CGG - chr1_2:18761329-18761348 None:intergenic 60.0%
! CGCTTTAATGGGTCCGGGCT+TGG - chr1_2:18761335-18761354 None:intergenic 60.0%
!! GACCGGTTCGAGCAGGCCTT+TGG - chr1_2:18759202-18759221 None:intergenic 65.0%
!! CCGCTCGGACTGGTCGAACT+AGG - chr1_2:18759237-18759256 None:intergenic 65.0%
GTCCAGCTAAGACGGCGGGT+AGG - chr1_2:18759598-18759617 None:intergenic 65.0%
GGCAGTCCAGCTAAGACGGC+GGG - chr1_2:18759602-18759621 None:intergenic 65.0%
CGGCAGTCCAGCTAAGACGG+CGG - chr1_2:18759603-18759622 None:intergenic 65.0%
GGGCGGCAGTCCAGCTAAGA+CGG - chr1_2:18759606-18759625 None:intergenic 65.0%
ATGGGTCCGGGCTTGGATCC+GGG - chr1_2:18761328-18761347 None:intergenic 65.0%
GTTCGACCAGTCCGAGCGGC+CGG + chr1_2:18759238-18759257 Msa0060850:intron 70.0%
CTCGAACCGGCCGCTCGGAC+TGG - chr1_2:18759247-18759266 None:intergenic 75.0%
! CTCGGCTCGAACCGGCCGCT+CGG - chr1_2:18759252-18759271 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18756482 18764707 18756482 ID=Msa0060850;Name=Msa0060850
chr1_2 mRNA 18756482 18764707 18756482 ID=Msa0060850-mRNA-1;Parent=Msa0060850;Name=Msa0060850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0.16|1|0|0.16|6|1283|241
chr1_2 exon 18756482 18756561 18756482 ID=Msa0060850-mRNA-1:exon:7260;Parent=Msa0060850-mRNA-1
chr1_2 exon 18756577 18756815 18756577 ID=Msa0060850-mRNA-1:exon:7261;Parent=Msa0060850-mRNA-1
chr1_2 exon 18756831 18757077 18756831 ID=Msa0060850-mRNA-1:exon:7262;Parent=Msa0060850-mRNA-1
chr1_2 exon 18757091 18757160 18757091 ID=Msa0060850-mRNA-1:exon:7263;Parent=Msa0060850-mRNA-1
chr1_2 exon 18757185 18757265 18757185 ID=Msa0060850-mRNA-1:exon:7264;Parent=Msa0060850-mRNA-1
chr1_2 exon 18763416 18764707 18763416 ID=Msa0060850-mRNA-1:exon:7265;Parent=Msa0060850-mRNA-1
chr1_2 CDS 18756482 18756561 18756482 ID=Msa0060850-mRNA-1:cds;Parent=Msa0060850-mRNA-1
chr1_2 CDS 18756577 18756815 18756577 ID=Msa0060850-mRNA-1:cds;Parent=Msa0060850-mRNA-1
chr1_2 CDS 18756831 18757077 18756831 ID=Msa0060850-mRNA-1:cds;Parent=Msa0060850-mRNA-1
chr1_2 CDS 18757091 18757160 18757091 ID=Msa0060850-mRNA-1:cds;Parent=Msa0060850-mRNA-1
chr1_2 CDS 18757185 18757265 18757185 ID=Msa0060850-mRNA-1:cds;Parent=Msa0060850-mRNA-1
chr1_2 CDS 18763416 18763424 18763416 ID=Msa0060850-mRNA-1:cds;Parent=Msa0060850-mRNA-1
chr1_2 three_prime_UTR 18763425 18764707 18763425 ID=Msa0060850-mRNA-1:three_prime_utr;Parent=Msa0060850-mRNA-1
Gene Sequence

>Msa0060850

ATGCCATCCTTAACCCTTGTTGTGGTGTTACTGTTACTTATATTCTCGTACAATGTAGATGGTGATGATGAACATCAAGAGTGCGGCGTCCATAACATCAGCCACCCTTTCCGGCTGAAAGACAGTCCTGAAAAGTGTGGTGACAAAAGGTACATCCTATCATGTGAGGACAATAACCAATTGATTTTGTACTATGAATTTGAAGAATACCATGGAAAATACTACCATGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACCATACGACTATTGGATTTCAATCTTGCTTCCTCTAATAATTCCATCCCTCGGATCTATAATTTCAGTTCTTACTACGACACACCCTACCTAACCTATTATCGATACAAAAACCAGATTGATCATATATTGACGAAGTCTATATTATATGTGAGCTGTCCAAATCGTACATATCAACATTCATATGTTGTAGATGAAGGTGGTAACTGTCTGAATAATAGTTCAAATTCACAGTACGAGAACTCTTTCTATGTTGATGGCTATGGCAAAACTCTTTCGGAGTTGGGGTTGAGAGATGGTTTATGTTTCTCACATCTTGGTCTCTTGAAGATGGCAACAACAATAACATTTCTTGCACGGACATCAACCTATCTTGGCTCAATAGTCTTTGTAAAGATGGTTGGCATACAGAGTTTGATCAAAATAACAACAGTCAATGTCGACCTCCAGGTGAGTTGA
Protein sequence

>Msa0060850

MPSLTLVVVLLLLIFSYNVDGDDEHQECGVHNISHPFRLKDSPEKCGDKRYILSCEDNNQLILYYEFEEYHGKYYHGKYYVQSINYNNFTIRLLDFNLASSNNSIPRIYNFSSYYDTPYLTYYRYKNQIDHILTKSILYVSCPNRTYQHSYVVDEGGNCLNNSSNSQYENSFYVDGYGKTLSELGLRDGLCFSHLGLLKMATTITFLARTSTYLGSIVFVKMVGIQSLIKITTVNVDLQVS*