Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062410 | G7IA18 | 98.403 | 313 | 5 | 0 | 1 | 313 | 1 | 313 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058370 | Msa0062410 | 0.800390 | 1.474069e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062410 | MtrunA17_Chr1g0162901 | 98.403 | 313 | 5 | 0 | 1 | 313 | 1 | 313 | 0.0 | 642 |
| Msa0062410 | MtrunA17_Chr1g0162651 | 31.818 | 176 | 103 | 4 | 66 | 241 | 23 | 181 | 1.16e-22 | 95.1 |
| Msa0062410 | MtrunA17_Chr4g0034271 | 32.948 | 173 | 98 | 4 | 66 | 238 | 5 | 159 | 1.40e-21 | 91.7 |
| Msa0062410 | MtrunA17_Chr7g0258771 | 28.889 | 180 | 109 | 6 | 67 | 237 | 11 | 180 | 1.05e-14 | 74.3 |
| Msa0062410 | MtrunA17_Chr7g0223411 | 34.959 | 123 | 70 | 5 | 74 | 192 | 4 | 120 | 7.35e-14 | 69.7 |
| Msa0062410 | MtrunA17_Chr7g0223461 | 35.185 | 108 | 65 | 3 | 86 | 191 | 16 | 120 | 1.06e-13 | 69.3 |
| Msa0062410 | MtrunA17_Chr7g0223421 | 33.333 | 108 | 67 | 3 | 74 | 179 | 7 | 111 | 9.89e-13 | 67.0 |
| Msa0062410 | MtrunA17_Chr7g0223501 | 32.110 | 109 | 69 | 3 | 74 | 180 | 4 | 109 | 1.12e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062410 | AT1G20990.1 | 52.963 | 270 | 121 | 5 | 47 | 312 | 48 | 315 | 2.62e-95 | 285 |
| Msa0062410 | AT2G16050.1 | 33.333 | 180 | 93 | 5 | 66 | 238 | 5 | 164 | 1.55e-22 | 94.4 |
| Msa0062410 | AT2G37820.1 | 34.066 | 182 | 101 | 8 | 58 | 236 | 2 | 167 | 2.11e-22 | 95.1 |
| Msa0062410 | AT2G37805.1 | 32.804 | 189 | 107 | 8 | 67 | 249 | 11 | 185 | 3.00e-22 | 94.0 |
| Msa0062410 | AT2G37800.1 | 32.584 | 178 | 104 | 6 | 67 | 242 | 11 | 174 | 9.20e-22 | 92.8 |
| Msa0062410 | AT2G37810.1 | 31.818 | 176 | 98 | 7 | 67 | 240 | 11 | 166 | 3.19e-18 | 82.4 |
| Msa0062410 | AT2G42060.1 | 31.818 | 198 | 115 | 8 | 66 | 248 | 2 | 194 | 4.29e-18 | 82.8 |
| Msa0062410 | AT2G44380.1 | 31.429 | 175 | 102 | 8 | 67 | 233 | 12 | 176 | 1.94e-16 | 77.8 |
| Msa0062410 | AT2G27660.1 | 32.370 | 173 | 104 | 8 | 67 | 236 | 12 | 174 | 2.97e-16 | 79.7 |
| Msa0062410 | AT2G28270.1 | 30.270 | 185 | 113 | 9 | 67 | 243 | 11 | 187 | 7.38e-16 | 76.3 |
| Msa0062410 | AT5G22355.1 | 29.592 | 196 | 117 | 7 | 56 | 239 | 44 | 230 | 5.28e-15 | 75.9 |
| Msa0062410 | AT5G22355.1 | 27.273 | 198 | 116 | 8 | 63 | 248 | 172 | 353 | 5.07e-11 | 63.9 |
| Msa0062410 | AT3G48400.1 | 30.168 | 179 | 109 | 5 | 66 | 239 | 60 | 227 | 5.71e-13 | 69.7 |
| Msa0062410 | AT5G59930.2 | 29.609 | 179 | 110 | 6 | 66 | 239 | 58 | 225 | 1.87e-12 | 68.2 |
| Msa0062410 | AT5G59930.1 | 29.609 | 179 | 110 | 6 | 66 | 239 | 58 | 225 | 2.25e-12 | 68.2 |
| Msa0062410 | AT5G59940.1 | 29.944 | 177 | 108 | 6 | 66 | 238 | 60 | 224 | 2.74e-12 | 67.8 |
| Msa0062410 | AT2G37780.1 | 31.092 | 119 | 77 | 2 | 65 | 183 | 5 | 118 | 4.33e-12 | 65.9 |
| Msa0062410 | AT2G44370.1 | 31.034 | 174 | 101 | 8 | 67 | 233 | 8 | 169 | 3.38e-11 | 62.8 |
| Msa0062410 | AT4G01350.1 | 29.944 | 177 | 110 | 6 | 66 | 239 | 60 | 225 | 7.78e-11 | 63.2 |
| Msa0062410 | AT5G59920.1 | 28.814 | 177 | 112 | 6 | 66 | 239 | 60 | 225 | 9.56e-11 | 63.2 |
Find 101 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAAATCACAATGGAATT+TGG | 0.132394 | 1_2:+21837890 | None:intergenic |
| CATATGATGATTAATTAATT+TGG | 0.133368 | 1_2:-21838236 | Msa0062410:three_prime_UTR |
| ATGTATCGAGCTTAAAATTA+TGG | 0.157172 | 1_2:-21838103 | Msa0062410:three_prime_UTR |
| TGTGCTAAGAATAAAGTTAA+TGG | 0.247808 | 1_2:-21838556 | Msa0062410:CDS |
| ACCTCTCCACAACTCATATT+TGG | 0.251934 | 1_2:-21840744 | Msa0062410:CDS |
| TTCCGTTTGTTCTCATTTCC+AGG | 0.278627 | 1_2:+21837831 | None:intergenic |
| CAAGTTGTGATTGAATTTAT+TGG | 0.281922 | 1_2:-21838463 | Msa0062410:CDS |
| TGAAGGTATTGGTGAAAGTA+TGG | 0.294851 | 1_2:-21838431 | Msa0062410:CDS |
| TAGAGTTCCATTTCCTCCTT+TGG | 0.301378 | 1_2:+21838384 | None:intergenic |
| TTTGGCTCCTCCTGCACTTA+AGG | 0.308543 | 1_2:-21840571 | Msa0062410:CDS |
| TGATCCGACTTTGATCAAAA+AGG | 0.310480 | 1_2:-21837962 | Msa0062410:three_prime_UTR |
| GTCTTCAAGCTAATGGTATT+AGG | 0.329280 | 1_2:-21838534 | Msa0062410:CDS |
| AAATTATGGGTAATGTTTGA+TGG | 0.341349 | 1_2:-21838089 | Msa0062410:three_prime_UTR |
| TGGGCCCACATTCCCATCTT+AGG | 0.344688 | 1_2:+21838043 | None:intergenic |
| TTGAGAGTGTGTGGATGATT+TGG | 0.350556 | 1_2:+21838718 | None:intergenic |
| CAAATTAATTAATCATCATA+TGG | 0.357366 | 1_2:+21838237 | None:intergenic |
| TGTATCGAGCTTAAAATTAT+GGG | 0.357997 | 1_2:-21838102 | Msa0062410:three_prime_UTR |
| GGTGGGTTTGTTGAAGGTAT+TGG | 0.358236 | 1_2:-21838442 | Msa0062410:CDS |
| TGTGTAGGTTGTAAAGAATA+TGG | 0.368011 | 1_2:-21840651 | Msa0062410:CDS |
| AACATTACCAAAGGAGGAAA+TGG | 0.377084 | 1_2:-21838391 | Msa0062410:CDS |
| TTTGCCACAAACGTCGCATT+TGG | 0.379974 | 1_2:+21838828 | None:intergenic |
| TGAAGTTATTGTATCAAAAT+CGG | 0.383299 | 1_2:-21838166 | Msa0062410:three_prime_UTR |
| TGTTGTTTGTGTCTTTCTCC+TGG | 0.387800 | 1_2:-21837849 | Msa0062410:three_prime_UTR |
| ATCGGTGTTTGTTGCGGCCC+CGG | 0.388093 | 1_2:+21838672 | None:intergenic |
| TGAGAGTGTGTGGATGATTT+GGG | 0.389020 | 1_2:+21838719 | None:intergenic |
| GTTAATGGTCTTCAAGCTAA+TGG | 0.394008 | 1_2:-21838541 | Msa0062410:CDS |
| TACAACCTACACAAATAAAT+AGG | 0.406914 | 1_2:+21840661 | None:intergenic |
| GAGAGAGTTAGTACCTGGTT+TGG | 0.413783 | 1_2:+21840509 | None:intergenic |
| TGGCACAACATGGATGCATT+TGG | 0.423995 | 1_2:+21838764 | None:intergenic |
| CATGACTTGGAGCTGTGATT+TGG | 0.435092 | 1_2:+21840835 | None:intergenic |
| GTGATTTGGTATTCTTTAGT+TGG | 0.436008 | 1_2:+21840849 | None:intergenic |
| ATGGAAGAGCATTGCATGTT+GGG | 0.440397 | 1_2:+21840533 | None:intergenic |
| AAATCCAAATGCGACGTTTG+TGG | 0.443404 | 1_2:-21838832 | Msa0062410:CDS |
| GACTCATTCTACACCTAAGA+TGG | 0.454451 | 1_2:-21838056 | Msa0062410:three_prime_UTR |
| TTATATATTTCAGTGAAAAG+TGG | 0.456980 | 1_2:-21838862 | Msa0062410:intron |
| GTACTATTCCTTCTCCTCCA+TGG | 0.458149 | 1_2:+21838281 | None:intergenic |
| GAGTGCAAGAAACGAAGGTC+GGG | 0.467602 | 1_2:-21838625 | Msa0062410:CDS |
| CTCCTGGAAATGAGAACAAA+CGG | 0.469252 | 1_2:-21837833 | Msa0062410:three_prime_UTR |
| AGTAGTATTATTATTAGCAC+TGG | 0.474464 | 1_2:+21838360 | None:intergenic |
| TTCAATTTCTGTGTTGAGCA+TGG | 0.482378 | 1_2:+21838744 | None:intergenic |
| CCTGACCTATTTATTTGTGT+AGG | 0.482407 | 1_2:-21840666 | Msa0062410:CDS |
| ATTAATTAATTTGGAATCAA+CGG | 0.483099 | 1_2:-21838227 | Msa0062410:three_prime_UTR |
| TGTGACTATAGTTGTGACTT+TGG | 0.488415 | 1_2:+21840797 | None:intergenic |
| GTTTGTTGCGGCCCCGGTGG+TGG | 0.489625 | 1_2:+21838678 | None:intergenic |
| TTTATTGGTGGGTTTGTTGA+AGG | 0.497338 | 1_2:-21838448 | Msa0062410:CDS |
| CACATTCACAAACCACCACC+GGG | 0.500106 | 1_2:-21838690 | Msa0062410:CDS |
| TCTCTAGTCCATGGAGGAGA+AGG | 0.502139 | 1_2:-21838289 | Msa0062410:three_prime_UTR |
| GGAGAGGTAGGAAAGTCAAT+TGG | 0.503571 | 1_2:+21840759 | None:intergenic |
| ACAACACCCTCTCTCAATGA+TGG | 0.514869 | 1_2:-21840694 | Msa0062410:CDS |
| AGTTAGTACCTGGTTTGGAA+TGG | 0.514925 | 1_2:+21840514 | None:intergenic |
| AACGATCGTGTTGGAAAGAT+CGG | 0.526444 | 1_2:+21838654 | None:intergenic |
| ACACATTCACAAACCACCAC+CGG | 0.526885 | 1_2:-21838691 | Msa0062410:CDS |
| GGTTGTAAAGAATATGGCTC+TGG | 0.528048 | 1_2:-21840645 | Msa0062410:CDS |
| GAGGTAGGAAAGTCAATTGG+AGG | 0.531778 | 1_2:+21840762 | None:intergenic |
| ATCCATCCATTCTACTCAAG+TGG | 0.542308 | 1_2:+21838023 | None:intergenic |
| CTTGTTCAAAACATTACCAA+AGG | 0.542587 | 1_2:-21838400 | Msa0062410:CDS |
| GTTTGTGGCAAACCAACAAA+AGG | 0.544375 | 1_2:-21838817 | Msa0062410:CDS |
| CCTACACAAATAAATAGGTC+AGG | 0.546783 | 1_2:+21840666 | None:intergenic |
| AGAGCATTGCATGTTGGGAA+TGG | 0.547782 | 1_2:+21840538 | None:intergenic |
| GTGGGCCCACTTGAGTAGAA+TGG | 0.547983 | 1_2:-21838029 | Msa0062410:three_prime_UTR |
| TCTTCTCCAAATATGAGTTG+TGG | 0.550913 | 1_2:+21840738 | None:intergenic |
| GTAGGAAAGTCAATTGGAGG+AGG | 0.562034 | 1_2:+21840765 | None:intergenic |
| CACAAATAAATAGGTCAGGA+AGG | 0.566191 | 1_2:+21840670 | None:intergenic |
| AATATGAGTTGTGGAGAGGT+AGG | 0.566703 | 1_2:+21840747 | None:intergenic |
| ATCATTGAGAGAGGGTGTTG+TGG | 0.567548 | 1_2:+21840696 | None:intergenic |
| ATGCTCTTCCATTCCAAACC+AGG | 0.568675 | 1_2:-21840522 | Msa0062410:intron |
| AAAGGATGAGCCTTAAGTGC+AGG | 0.573452 | 1_2:+21840561 | None:intergenic |
| GCAGCAGCAGAAAGAACACT+TGG | 0.575529 | 1_2:+21838499 | None:intergenic |
| TAATATTGATCATCATGACT+TGG | 0.576672 | 1_2:+21840822 | None:intergenic |
| CTCGTTGCAAACGATCGTGT+TGG | 0.577724 | 1_2:+21838645 | None:intergenic |
| GGAAAGCGCATGCAGTGCAT+AGG | 0.582502 | 1_2:+21838785 | None:intergenic |
| GTTCAAAACATTACCAAAGG+AGG | 0.583273 | 1_2:-21838397 | Msa0062410:CDS |
| GGAAAGATCGGTGTTTGTTG+CGG | 0.583663 | 1_2:+21838666 | None:intergenic |
| TGTGTAAGTTTGAGAGTGTG+TGG | 0.589605 | 1_2:+21838709 | None:intergenic |
| TACACCTAAGATGGGAATGT+GGG | 0.591256 | 1_2:-21838047 | Msa0062410:three_prime_UTR |
| TCCATCCATTCTACTCAAGT+GGG | 0.597549 | 1_2:+21838024 | None:intergenic |
| AATGGAAGAGCATTGCATGT+TGG | 0.599829 | 1_2:+21840532 | None:intergenic |
| TGATCATAATAATGATGATG+AGG | 0.602995 | 1_2:-21840923 | Msa0062410:exon |
| GAAGGTATTGGTGAAAGTAT+GGG | 0.605206 | 1_2:-21838430 | Msa0062410:CDS |
| GTTGTGATTGAATTTATTGG+TGG | 0.605324 | 1_2:-21838460 | Msa0062410:CDS |
| GGGGAAAGTGTATCGGTGCA+CGG | 0.605648 | 1_2:-21838605 | Msa0062410:CDS |
| TTGTGATTGAATTTATTGGT+GGG | 0.605849 | 1_2:-21838459 | Msa0062410:CDS |
| GGATGAGCCTTAAGTGCAGG+AGG | 0.606499 | 1_2:+21840564 | None:intergenic |
| CTACACCTAAGATGGGAATG+TGG | 0.607124 | 1_2:-21838048 | Msa0062410:three_prime_UTR |
| GGAAGGTCCATCATTGAGAG+AGG | 0.617986 | 1_2:+21840687 | None:intergenic |
| TCCAAATATGAGTTGTGGAG+AGG | 0.618818 | 1_2:+21840743 | None:intergenic |
| GAAGGTCGGGGAAAGTGTAT+CGG | 0.622440 | 1_2:-21838612 | Msa0062410:CDS |
| CCTTAATGATAAAATCACAA+TGG | 0.622792 | 1_2:+21837883 | None:intergenic |
| ACTCATTCTACACCTAAGAT+GGG | 0.625341 | 1_2:-21838055 | Msa0062410:three_prime_UTR |
| CGAGTGCAAGAAACGAAGGT+CGG | 0.625441 | 1_2:-21838626 | Msa0062410:CDS |
| GCCCACTTGAGTAGAATGGA+TGG | 0.628345 | 1_2:-21838025 | Msa0062410:three_prime_UTR |
| ATCTTAGGTGTAGAATGAGT+CGG | 0.633113 | 1_2:+21838058 | None:intergenic |
| GGTGTTTGTTGCGGCCCCGG+TGG | 0.636946 | 1_2:+21838675 | None:intergenic |
| AGTGCAAGAAACGAAGGTCG+GGG | 0.650929 | 1_2:-21838624 | Msa0062410:CDS |
| GAAGGTCCATCATTGAGAGA+GGG | 0.655503 | 1_2:+21840688 | None:intergenic |
| GTGTTGAGCATGGCACAACA+TGG | 0.659309 | 1_2:+21838754 | None:intergenic |
| TTGAGTAGAATGGATGGATG+AGG | 0.659411 | 1_2:-21838019 | Msa0062410:three_prime_UTR |
| GCAACGAGTGCAAGAAACGA+AGG | 0.666806 | 1_2:-21838630 | Msa0062410:CDS |
| ATTGCATGTTGGGAATGGAA+AGG | 0.701543 | 1_2:+21840543 | None:intergenic |
| TTAGGTGTAGAATGAGTCGG+TGG | 0.716090 | 1_2:+21838061 | None:intergenic |
| ACATTCACAAACCACCACCG+GGG | 0.761133 | 1_2:-21838689 | Msa0062410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAAATATAAA+TGG | - | chr1_2:21839200-21839219 | Msa0062410:intron | 0.0% |
| !! | ATTTACAAAAAATAAAATTG+AGG | + | chr1_2:21838805-21838824 | None:intergenic | 10.0% |
| !!! | TCCTATTTATTATATTTTAA+AGG | + | chr1_2:21839555-21839574 | None:intergenic | 10.0% |
| !! | AAAATATAATAAATAGGAAA+CGG | - | chr1_2:21839557-21839576 | Msa0062410:intron | 10.0% |
| !!! | GATCAATAAATATAATTTTA+AGG | + | chr1_2:21840761-21840780 | None:intergenic | 10.0% |
| !! | CAATTAATTGGTAAAATTTA+TGG | + | chr1_2:21838254-21838273 | None:intergenic | 15.0% |
| !! | CAAATAATTCAACAATTAAT+TGG | + | chr1_2:21838266-21838285 | None:intergenic | 15.0% |
| !! | TTAAATAGGTTCATTTAAAT+CGG | - | chr1_2:21838597-21838616 | Msa0062410:CDS | 15.0% |
| !! | GTAAATAAAATGGAAAATAT+TGG | + | chr1_2:21838828-21838847 | None:intergenic | 15.0% |
| !! | TGCATAAAAAGTAAATAAAA+TGG | + | chr1_2:21838838-21838857 | None:intergenic | 15.0% |
| !!! | TTTTATTTACTTTTTATGCA+TGG | - | chr1_2:21838838-21838857 | Msa0062410:CDS | 15.0% |
| !!! | TACACTAATATTTTTTTTTG+TGG | - | chr1_2:21838941-21838960 | Msa0062410:intron | 15.0% |
| !!! | ATTGATCTTTTAAGTTATTT+TGG | - | chr1_2:21839341-21839360 | Msa0062410:intron | 15.0% |
| !!! | GCCTTTAAAATATAATAAAT+AGG | - | chr1_2:21839551-21839570 | Msa0062410:intron | 15.0% |
| !!! | TAATTGCAGTTTTAAAAATA+AGG | - | chr1_2:21839653-21839672 | Msa0062410:intron | 15.0% |
| !!! | AATTGCAGTTTTAAAAATAA+GGG | - | chr1_2:21839654-21839673 | Msa0062410:intron | 15.0% |
| !!! | AAGTAAAGATGAAATTTTTT+TGG | + | chr1_2:21839759-21839778 | None:intergenic | 15.0% |
| !!! | AAAAATTTCATCTTTACTTT+TGG | - | chr1_2:21839760-21839779 | Msa0062410:intron | 15.0% |
| !! | AGTAAAAAATATTATTTACG+AGG | + | chr1_2:21840410-21840429 | None:intergenic | 15.0% |
| !! | CAAATTAATTAATCATCATA+TGG | + | chr1_2:21840504-21840523 | None:intergenic | 15.0% |
| !! | CATATGATGATTAATTAATT+TGG | - | chr1_2:21840502-21840521 | Msa0062410:intron | 15.0% |
| !!! | ATTAATTAATTTGGAATCAA+CGG | - | chr1_2:21840511-21840530 | Msa0062410:intron | 15.0% |
| !! | TTGTTTCATACTTTCTAAAT+CGG | - | chr1_2:21838562-21838581 | Msa0062410:CDS | 20.0% |
| !! | GGTAAAATCACTTATTAAAT+AGG | - | chr1_2:21838583-21838602 | Msa0062410:CDS | 20.0% |
| !!! | ACTAATATTTTTTTTTGTGG+TGG | - | chr1_2:21838944-21838963 | Msa0062410:intron | 20.0% |
| !! | TATAATATATGCAATGTTTG+GGG | + | chr1_2:21838982-21839001 | None:intergenic | 20.0% |
| !! | GTATAATATATGCAATGTTT+GGG | + | chr1_2:21838983-21839002 | None:intergenic | 20.0% |
| !! | TGTATAATATATGCAATGTT+TGG | + | chr1_2:21838984-21839003 | None:intergenic | 20.0% |
| !!! | CACACTAATTTTAACTAATA+CGG | - | chr1_2:21839040-21839059 | Msa0062410:intron | 20.0% |
| !! | GAAAATGTTTACAAACTTAA+AGG | + | chr1_2:21839379-21839398 | None:intergenic | 20.0% |
| !! | TTAGCGAATCAAAATAAATA+TGG | - | chr1_2:21839628-21839647 | Msa0062410:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr1_2:21839696-21839715 | None:intergenic | 20.0% |
| !! | TGAAAAGTTGACATATTTAT+AGG | + | chr1_2:21839697-21839716 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGAAATTTTTTTG+AGG | + | chr1_2:21839728-21839747 | None:intergenic | 20.0% |
| !!! | TAAAGATGAAATTTTTTTGG+AGG | + | chr1_2:21839756-21839775 | None:intergenic | 20.0% |
| !! | ATATGTAATGTTAAAGAGTA+GGG | + | chr1_2:21839818-21839837 | None:intergenic | 20.0% |
| !! | TTATATATTTCAGTGAAAAG+TGG | - | chr1_2:21839876-21839895 | Msa0062410:intron | 20.0% |
| !! | TGAAGTTATTGTATCAAAAT+CGG | - | chr1_2:21840572-21840591 | Msa0062410:CDS | 20.0% |
| !! | TGATCATAATAATGATGATG+AGG | - | chr1_2:21837815-21837834 | Msa0062410:three_prime_UTR | 25.0% |
| ! | TAATATTGATCATCATGACT+TGG | + | chr1_2:21837919-21837938 | None:intergenic | 25.0% |
| ! | TACAACCTACACAAATAAAT+AGG | + | chr1_2:21838080-21838099 | None:intergenic | 25.0% |
| ! | AACTATCATTTAACAACGAA+AGG | + | chr1_2:21838537-21838556 | None:intergenic | 25.0% |
| !! | TTAACTGATTTAAAAAGTGC+CGG | - | chr1_2:21838621-21838640 | Msa0062410:CDS | 25.0% |
| ! | TTTAATGCGACACATTATAT+GGG | + | chr1_2:21838768-21838787 | None:intergenic | 25.0% |
| ! | ATTTAATGCGACACATTATA+TGG | + | chr1_2:21838769-21838788 | None:intergenic | 25.0% |
| ! | TATAATGTGTCGCATTAAAT+AGG | - | chr1_2:21838769-21838788 | Msa0062410:CDS | 25.0% |
| ! | ATTAGATGAAATTGTGACAT+GGG | + | chr1_2:21839165-21839184 | None:intergenic | 25.0% |
| ! | AATAGACTAAATTACAACAG+AGG | - | chr1_2:21839232-21839251 | Msa0062410:intron | 25.0% |
| ! | AAGTTAACCAAACAATGATA+TGG | + | chr1_2:21839417-21839436 | None:intergenic | 25.0% |
| ! | GAAAACGTTTACAAACTTAA+AGG | - | chr1_2:21839449-21839468 | Msa0062410:intron | 25.0% |
| ! | TATACAAACCTCAAACTTAA+AGG | - | chr1_2:21839511-21839530 | Msa0062410:intron | 25.0% |
| !! | TTTGAGTTTACTCTAAATGA+GGG | + | chr1_2:21839787-21839806 | None:intergenic | 25.0% |
| !! | ATTTGAGTTTACTCTAAATG+AGG | + | chr1_2:21839788-21839807 | None:intergenic | 25.0% |
| ! | CATATGTAATGTTAAAGAGT+AGG | + | chr1_2:21839819-21839838 | None:intergenic | 25.0% |
| ! | CTACTCTTTAACATTACATA+TGG | - | chr1_2:21839817-21839836 | Msa0062410:intron | 25.0% |
| ! | TCTTGATTTCATTCTCATTA+TGG | - | chr1_2:21839841-21839860 | Msa0062410:intron | 25.0% |
| ! | TGTGCTAAGAATAAAGTTAA+TGG | - | chr1_2:21840182-21840201 | Msa0062410:intron | 25.0% |
| ! | CAAGTTGTGATTGAATTTAT+TGG | - | chr1_2:21840275-21840294 | Msa0062410:intron | 25.0% |
| ! | TTGTGATTGAATTTATTGGT+GGG | - | chr1_2:21840279-21840298 | Msa0062410:intron | 25.0% |
| ! | AGTAGTATTATTATTAGCAC+TGG | + | chr1_2:21840381-21840400 | None:intergenic | 25.0% |
| ! | ATGTATCGAGCTTAAAATTA+TGG | - | chr1_2:21840635-21840654 | Msa0062410:CDS | 25.0% |
| ! | TGTATCGAGCTTAAAATTAT+GGG | - | chr1_2:21840636-21840655 | Msa0062410:CDS | 25.0% |
| ! | AAATTATGGGTAATGTTTGA+TGG | - | chr1_2:21840649-21840668 | Msa0062410:CDS | 25.0% |
| ! | GATAAAATCACAATGGAATT+TGG | + | chr1_2:21840851-21840870 | None:intergenic | 25.0% |
| ! | CCTTAATGATAAAATCACAA+TGG | + | chr1_2:21840858-21840877 | None:intergenic | 25.0% |
| !! | CCATTGTGATTTTATCATTA+AGG | - | chr1_2:21840855-21840874 | Msa0062410:CDS | 25.0% |
| !!! | TAGTTGGTGATTTTTCTAGT+AGG | + | chr1_2:21837876-21837895 | None:intergenic | 30.0% |
| !! | GTGATTTGGTATTCTTTAGT+TGG | + | chr1_2:21837892-21837911 | None:intergenic | 30.0% |
| TGTGTAGGTTGTAAAGAATA+TGG | - | chr1_2:21838087-21838106 | Msa0062410:three_prime_UTR | 30.0% | |
| TTAATGCGACACATTATATG+GGG | + | chr1_2:21838767-21838786 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTATGCATGGCAA+TGG | - | chr1_2:21838844-21838863 | Msa0062410:CDS | 30.0% |
| !!! | ATATTTTTTTTTGTGGTGGC+CGG | - | chr1_2:21838948-21838967 | Msa0062410:intron | 30.0% |
| ! | ACTGAATGATTGACTCAATT+AGG | + | chr1_2:21839083-21839102 | None:intergenic | 30.0% |
| TTAGATGAAATTGTGACATG+GGG | + | chr1_2:21839164-21839183 | None:intergenic | 30.0% | |
| CATTAGATGAAATTGTGACA+TGG | + | chr1_2:21839166-21839185 | None:intergenic | 30.0% | |
| GTTACAAACCTCAAACTTAA+AGG | + | chr1_2:21839259-21839278 | None:intergenic | 30.0% | |
| ! | GTTTGAGGTTTGTAACAAAT+TGG | - | chr1_2:21839263-21839282 | Msa0062410:intron | 30.0% |
| CAAACTTAAAAGACTTGTGT+GGG | + | chr1_2:21839308-21839327 | None:intergenic | 30.0% | |
| TCAAACTTAAAAGACTTGTG+TGG | + | chr1_2:21839309-21839328 | None:intergenic | 30.0% | |
| !!! | ACACAAGTCTTTTAAGTTTG+AGG | - | chr1_2:21839308-21839327 | Msa0062410:intron | 30.0% |
| ! | ATAGGAAACGGAAGATTTTA+TGG | - | chr1_2:21839569-21839588 | Msa0062410:intron | 30.0% |
| GTTGTGATTGAATTTATTGG+TGG | - | chr1_2:21840278-21840297 | Msa0062410:intron | 30.0% | |
| CTTGTTCAAAACATTACCAA+AGG | - | chr1_2:21840338-21840357 | Msa0062410:intron | 30.0% | |
| ! | AGAACCTTTTTGATCAAAGT+CGG | + | chr1_2:21840783-21840802 | None:intergenic | 30.0% |
| !! | TGGTGATTTTTCTAGTAGGA+AGG | + | chr1_2:21837872-21837891 | None:intergenic | 35.0% |
| TGTGACTATAGTTGTGACTT+TGG | + | chr1_2:21837944-21837963 | None:intergenic | 35.0% | |
| TCTTCTCCAAATATGAGTTG+TGG | + | chr1_2:21838003-21838022 | None:intergenic | 35.0% | |
| CACAAATAAATAGGTCAGGA+AGG | + | chr1_2:21838071-21838090 | None:intergenic | 35.0% | |
| CCTACACAAATAAATAGGTC+AGG | + | chr1_2:21838075-21838094 | None:intergenic | 35.0% | |
| CCTGACCTATTTATTTGTGT+AGG | - | chr1_2:21838072-21838091 | Msa0062410:three_prime_UTR | 35.0% | |
| ! | ACTTCATGACTTTTGTGCTT+TGG | - | chr1_2:21838149-21838168 | Msa0062410:three_prime_UTR | 35.0% |
| ACACTAGCTAACTATCTTTC+CGG | + | chr1_2:21838643-21838662 | None:intergenic | 35.0% | |
| ! | TGGCATATTGGCATTTCTTT+TGG | - | chr1_2:21838864-21838883 | Msa0062410:intron | 35.0% |
| !!! | TATTTTTTTTTGTGGTGGCC+GGG | - | chr1_2:21838949-21838968 | Msa0062410:intron | 35.0% |
| TAGATGAAATTGTGACATGG+GGG | + | chr1_2:21839163-21839182 | None:intergenic | 35.0% | |
| GTGGGAGCAAAATAACTTAA+AGG | + | chr1_2:21839290-21839309 | None:intergenic | 35.0% | |
| ! | TCATGAGTCCTTTAAGTTTG+AGG | + | chr1_2:21839522-21839541 | None:intergenic | 35.0% |
| ! | AGGAATGTATAGCCTTTTGT+TGG | + | chr1_2:21839936-21839955 | None:intergenic | 35.0% |
| TTCAATTTCTGTGTTGAGCA+TGG | + | chr1_2:21839997-21840016 | None:intergenic | 35.0% | |
| GTTAATGGTCTTCAAGCTAA+TGG | - | chr1_2:21840197-21840216 | Msa0062410:intron | 35.0% | |
| GTCTTCAAGCTAATGGTATT+AGG | - | chr1_2:21840204-21840223 | Msa0062410:intron | 35.0% | |
| !! | GAAAGAACACTTGGTTTTTC+AGG | + | chr1_2:21840233-21840252 | None:intergenic | 35.0% |
| !! | TTTATTGGTGGGTTTGTTGA+AGG | - | chr1_2:21840290-21840309 | Msa0062410:intron | 35.0% |
| !! | TGAAGGTATTGGTGAAAGTA+TGG | - | chr1_2:21840307-21840326 | Msa0062410:intron | 35.0% |
| !! | GAAGGTATTGGTGAAAGTAT+GGG | - | chr1_2:21840308-21840327 | Msa0062410:intron | 35.0% |
| GTTCAAAACATTACCAAAGG+AGG | - | chr1_2:21840341-21840360 | Msa0062410:intron | 35.0% | |
| AACATTACCAAAGGAGGAAA+TGG | - | chr1_2:21840347-21840366 | Msa0062410:intron | 35.0% | |
| ! | TCATGTTTTTCTCTAGTCCA+TGG | - | chr1_2:21840440-21840459 | Msa0062410:intron | 35.0% |
| ATCTTAGGTGTAGAATGAGT+CGG | + | chr1_2:21840683-21840702 | None:intergenic | 35.0% | |
| ACTCATTCTACACCTAAGAT+GGG | - | chr1_2:21840683-21840702 | Msa0062410:CDS | 35.0% | |
| TGATCCGACTTTGATCAAAA+AGG | - | chr1_2:21840776-21840795 | Msa0062410:CDS | 35.0% | |
| AATATGAGTTGTGGAGAGGT+AGG | + | chr1_2:21837994-21838013 | None:intergenic | 40.0% | |
| ACCTCTCCACAACTCATATT+TGG | - | chr1_2:21837994-21838013 | Msa0062410:three_prime_UTR | 40.0% | |
| TCCAAATATGAGTTGTGGAG+AGG | + | chr1_2:21837998-21838017 | None:intergenic | 40.0% | |
| GGTTGTAAAGAATATGGCTC+TGG | - | chr1_2:21838093-21838112 | Msa0062410:three_prime_UTR | 40.0% | |
| ATTGCATGTTGGGAATGGAA+AGG | + | chr1_2:21838198-21838217 | None:intergenic | 40.0% | |
| !! | ATGGAAGAGCATTGCATGTT+GGG | + | chr1_2:21838208-21838227 | None:intergenic | 40.0% |
| !! | AATGGAAGAGCATTGCATGT+TGG | + | chr1_2:21838209-21838228 | None:intergenic | 40.0% |
| !! | AGTTAGTACCTGGTTTGGAA+TGG | + | chr1_2:21838227-21838246 | None:intergenic | 40.0% |
| TTATGGAGAGAGTTAGTACC+TGG | + | chr1_2:21838237-21838256 | None:intergenic | 40.0% | |
| TATGCATGGCAATGGCATAT+TGG | - | chr1_2:21838852-21838871 | Msa0062410:CDS | 40.0% | |
| !!! | ATTTTTTTTTGTGGTGGCCG+GGG | - | chr1_2:21838950-21838969 | Msa0062410:intron | 40.0% |
| TATCAACTGAGCTAAGCTCA+CGG | - | chr1_2:21839008-21839027 | Msa0062410:intron | 40.0% | |
| AGATGAAATTGTGACATGGG+GGG | + | chr1_2:21839162-21839181 | None:intergenic | 40.0% | |
| ! | ACAGAGGTCCTTTAAGTTTG+AGG | - | chr1_2:21839248-21839267 | Msa0062410:intron | 40.0% |
| CCAAACAATGATATGGCAGA+AGG | + | chr1_2:21839410-21839429 | None:intergenic | 40.0% | |
| CCTTCTGCCATATCATTGTT+TGG | - | chr1_2:21839407-21839426 | Msa0062410:intron | 40.0% | |
| ! | GGAAACGGAAGATTTTATGG+TGG | - | chr1_2:21839572-21839591 | Msa0062410:intron | 40.0% |
| ! | TTTATGGTGGAGCTAAAGAG+TGG | - | chr1_2:21839585-21839604 | Msa0062410:intron | 40.0% |
| AAATCCAAATGCGACGTTTG+TGG | - | chr1_2:21839906-21839925 | Msa0062410:intron | 40.0% | |
| GTTTGTGGCAAACCAACAAA+AGG | - | chr1_2:21839921-21839940 | Msa0062410:intron | 40.0% | |
| ! | TGAGAGTGTGTGGATGATTT+GGG | + | chr1_2:21840022-21840041 | None:intergenic | 40.0% |
| ! | TTGAGAGTGTGTGGATGATT+TGG | + | chr1_2:21840023-21840042 | None:intergenic | 40.0% |
| ! | TGTGTAAGTTTGAGAGTGTG+TGG | + | chr1_2:21840032-21840051 | None:intergenic | 40.0% |
| AACGATCGTGTTGGAAAGAT+CGG | + | chr1_2:21840087-21840106 | None:intergenic | 40.0% | |
| TAGAGTTCCATTTCCTCCTT+TGG | + | chr1_2:21840357-21840376 | None:intergenic | 40.0% | |
| ! | TGTTTTTCTCTAGTCCATGG+AGG | - | chr1_2:21840443-21840462 | Msa0062410:intron | 40.0% |
| GACTCATTCTACACCTAAGA+TGG | - | chr1_2:21840682-21840701 | Msa0062410:CDS | 40.0% | |
| TACACCTAAGATGGGAATGT+GGG | - | chr1_2:21840691-21840710 | Msa0062410:CDS | 40.0% | |
| TCCATCCATTCTACTCAAGT+GGG | + | chr1_2:21840717-21840736 | None:intergenic | 40.0% | |
| ATCCATCCATTCTACTCAAG+TGG | + | chr1_2:21840718-21840737 | None:intergenic | 40.0% | |
| TTGAGTAGAATGGATGGATG+AGG | - | chr1_2:21840719-21840738 | Msa0062410:CDS | 40.0% | |
| ! | TGTTGTTTGTGTCTTTCTCC+TGG | - | chr1_2:21840889-21840908 | Msa0062410:CDS | 40.0% |
| CTCCTGGAAATGAGAACAAA+CGG | - | chr1_2:21840905-21840924 | Msa0062410:CDS | 40.0% | |
| TTCCGTTTGTTCTCATTTCC+AGG | + | chr1_2:21840910-21840929 | None:intergenic | 40.0% | |
| ! | CATGACTTGGAGCTGTGATT+TGG | + | chr1_2:21837906-21837925 | None:intergenic | 45.0% |
| GTAGGAAAGTCAATTGGAGG+AGG | + | chr1_2:21837976-21837995 | None:intergenic | 45.0% | |
| GAGGTAGGAAAGTCAATTGG+AGG | + | chr1_2:21837979-21837998 | None:intergenic | 45.0% | |
| GGAGAGGTAGGAAAGTCAAT+TGG | + | chr1_2:21837982-21838001 | None:intergenic | 45.0% | |
| !! | ATCATTGAGAGAGGGTGTTG+TGG | + | chr1_2:21838045-21838064 | None:intergenic | 45.0% |
| ACAACACCCTCTCTCAATGA+TGG | - | chr1_2:21838044-21838063 | Msa0062410:three_prime_UTR | 45.0% | |
| GAAGGTCCATCATTGAGAGA+GGG | + | chr1_2:21838053-21838072 | None:intergenic | 45.0% | |
| AAAGGATGAGCCTTAAGTGC+AGG | + | chr1_2:21838180-21838199 | None:intergenic | 45.0% | |
| !! | AGAGCATTGCATGTTGGGAA+TGG | + | chr1_2:21838203-21838222 | None:intergenic | 45.0% |
| ATGCTCTTCCATTCCAAACC+AGG | - | chr1_2:21838216-21838235 | Msa0062410:three_prime_UTR | 45.0% | |
| GAGAGAGTTAGTACCTGGTT+TGG | + | chr1_2:21838232-21838251 | None:intergenic | 45.0% | |
| ! | AATGTTTGGGGTTCAAACCC+CGG | + | chr1_2:21838970-21838989 | None:intergenic | 45.0% |
| TTTGCCACAAACGTCGCATT+TGG | + | chr1_2:21839913-21839932 | None:intergenic | 45.0% | |
| TGGCACAACATGGATGCATT+TGG | + | chr1_2:21839977-21839996 | None:intergenic | 45.0% | |
| ACACATTCACAAACCACCAC+CGG | - | chr1_2:21840047-21840066 | Msa0062410:intron | 45.0% | |
| ! | GGAAAGATCGGTGTTTGTTG+CGG | + | chr1_2:21840075-21840094 | None:intergenic | 45.0% |
| !! | GGTGGGTTTGTTGAAGGTAT+TGG | - | chr1_2:21840296-21840315 | Msa0062410:intron | 45.0% |
| GTACTATTCCTTCTCCTCCA+TGG | + | chr1_2:21840460-21840479 | None:intergenic | 45.0% | |
| TTAGGTGTAGAATGAGTCGG+TGG | + | chr1_2:21840680-21840699 | None:intergenic | 45.0% | |
| CTACACCTAAGATGGGAATG+TGG | - | chr1_2:21840690-21840709 | Msa0062410:CDS | 45.0% | |
| !!! | TATATTTTTATTATTATTGA+TGG | + | chr1_2:21839198-21839217 | None:intergenic | 5.0% |
| GGAAGGTCCATCATTGAGAG+AGG | + | chr1_2:21838054-21838073 | None:intergenic | 50.0% | |
| ! | TTTGGCTCCTCCTGCACTTA+AGG | - | chr1_2:21838167-21838186 | Msa0062410:three_prime_UTR | 50.0% |
| GTGTTGAGCATGGCACAACA+TGG | + | chr1_2:21839987-21840006 | None:intergenic | 50.0% | |
| CACATTCACAAACCACCACC+GGG | - | chr1_2:21840048-21840067 | Msa0062410:intron | 50.0% | |
| ACATTCACAAACCACCACCG+GGG | - | chr1_2:21840049-21840068 | Msa0062410:intron | 50.0% | |
| CTCGTTGCAAACGATCGTGT+TGG | + | chr1_2:21840096-21840115 | None:intergenic | 50.0% | |
| GCAACGAGTGCAAGAAACGA+AGG | - | chr1_2:21840108-21840127 | Msa0062410:intron | 50.0% | |
| CGAGTGCAAGAAACGAAGGT+CGG | - | chr1_2:21840112-21840131 | Msa0062410:intron | 50.0% | |
| GAGTGCAAGAAACGAAGGTC+GGG | - | chr1_2:21840113-21840132 | Msa0062410:intron | 50.0% | |
| AGTGCAAGAAACGAAGGTCG+GGG | - | chr1_2:21840114-21840133 | Msa0062410:intron | 50.0% | |
| ! | GAAGGTCGGGGAAAGTGTAT+CGG | - | chr1_2:21840126-21840145 | Msa0062410:intron | 50.0% |
| GCAGCAGCAGAAAGAACACT+TGG | + | chr1_2:21840242-21840261 | None:intergenic | 50.0% | |
| TCTCTAGTCCATGGAGGAGA+AGG | - | chr1_2:21840449-21840468 | Msa0062410:intron | 50.0% | |
| GCCCACTTGAGTAGAATGGA+TGG | - | chr1_2:21840713-21840732 | Msa0062410:CDS | 50.0% | |
| GGATGAGCCTTAAGTGCAGG+AGG | + | chr1_2:21838177-21838196 | None:intergenic | 55.0% | |
| ! | CTTTTGGCGCATGCGCATAG+TGG | - | chr1_2:21838880-21838899 | Msa0062410:intron | 55.0% |
| ! | GGAAAGCGCATGCAGTGCAT+AGG | + | chr1_2:21839956-21839975 | None:intergenic | 55.0% |
| ! | GGGGAAAGTGTATCGGTGCA+CGG | - | chr1_2:21840133-21840152 | Msa0062410:intron | 55.0% |
| TGGGCCCACATTCCCATCTT+AGG | + | chr1_2:21840698-21840717 | None:intergenic | 55.0% | |
| GTGGGCCCACTTGAGTAGAA+TGG | - | chr1_2:21840709-21840728 | Msa0062410:CDS | 55.0% | |
| ! | ATCGGTGTTTGTTGCGGCCC+CGG | + | chr1_2:21840069-21840088 | None:intergenic | 60.0% |
| ! | GTTTGTTGCGGCCCCGGTGG+TGG | + | chr1_2:21840063-21840082 | None:intergenic | 70.0% |
| ! | GGTGTTTGTTGCGGCCCCGG+TGG | + | chr1_2:21840066-21840085 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21837776 | 21840984 | 21837776 | ID=Msa0062410;Name=Msa0062410 |
| chr1_2 | mRNA | 21837776 | 21840984 | 21837776 | ID=Msa0062410-mRNA-1;Parent=Msa0062410;Name=Msa0062410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=50|1|1|1|1|1|2|566|313 |
| chr1_2 | exon | 21837776 | 21838871 | 21837776 | ID=Msa0062410-mRNA-1:exon:8102;Parent=Msa0062410-mRNA-1 |
| chr1_2 | exon | 21840523 | 21840984 | 21840523 | ID=Msa0062410-mRNA-1:exon:8101;Parent=Msa0062410-mRNA-1 |
| chr1_2 | five_prime_UTR | 21840935 | 21840984 | 21840935 | ID=Msa0062410-mRNA-1:five_prime_utr;Parent=Msa0062410-mRNA-1 |
| chr1_2 | CDS | 21840523 | 21840934 | 21840523 | ID=Msa0062410-mRNA-1:cds;Parent=Msa0062410-mRNA-1 |
| chr1_2 | CDS | 21838342 | 21838871 | 21838342 | ID=Msa0062410-mRNA-1:cds;Parent=Msa0062410-mRNA-1 |
| chr1_2 | three_prime_UTR | 21837776 | 21838341 | 21837776 | ID=Msa0062410-mRNA-1:three_prime_utr;Parent=Msa0062410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
