Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073600 | XP_003590460.1 | 98.056 | 463 | 9 | 0 | 1 | 463 | 1 | 463 | 0.0 | 941 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073600 | G7IA94 | 98.056 | 463 | 9 | 0 | 1 | 463 | 1 | 463 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0073600 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026020 | Msa0073600 | 0.978098 | 4.041700e-145 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073600 | MtrunA17_Chr1g0181001 | 98.056 | 463 | 9 | 0 | 1 | 463 | 1 | 463 | 0.0 | 941 |
| Msa0073600 | MtrunA17_Chr8g0343641 | 39.370 | 127 | 72 | 3 | 318 | 443 | 527 | 649 | 7.78e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073600 | AT2G37025.2 | 50.000 | 114 | 56 | 1 | 321 | 433 | 271 | 384 | 1.09e-30 | 123 |
| Msa0073600 | AT2G37025.3 | 50.000 | 114 | 56 | 1 | 321 | 433 | 271 | 384 | 1.09e-30 | 123 |
| Msa0073600 | AT2G37025.1 | 50.000 | 114 | 56 | 1 | 321 | 433 | 271 | 384 | 1.09e-30 | 123 |
| Msa0073600 | AT1G72650.2 | 46.739 | 92 | 48 | 1 | 337 | 428 | 536 | 626 | 8.94e-20 | 92.8 |
| Msa0073600 | AT1G72650.1 | 46.739 | 92 | 48 | 1 | 337 | 428 | 530 | 620 | 9.01e-20 | 92.8 |
| Msa0073600 | AT1G17460.3 | 28.623 | 276 | 125 | 8 | 231 | 442 | 306 | 573 | 3.85e-18 | 87.4 |
| Msa0073600 | AT1G17460.1 | 28.623 | 276 | 125 | 8 | 231 | 442 | 327 | 594 | 3.93e-18 | 87.4 |
| Msa0073600 | AT1G17460.2 | 28.623 | 276 | 125 | 8 | 231 | 442 | 347 | 614 | 4.18e-18 | 87.4 |
Find 123 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATCTTGTTGAAATTT+TGG | 0.114851 | 1_2:+47382973 | Msa0073600:three_prime_UTR |
| GAAAATAGTACCTCTTTCTT+TGG | 0.210015 | 1_2:-47381466 | None:intergenic |
| AATGAAACATGATCATTTCT+AGG | 0.222946 | 1_2:-47379888 | None:intergenic |
| TGGTTCTAAAATCTAATATA+TGG | 0.253952 | 1_2:+47378056 | Msa0073600:five_prime_UTR |
| ATACATATAGTTTCGAATAT+TGG | 0.255181 | 1_2:-47378166 | None:intergenic |
| ACTGAAGGGGTTAGGCATTA+AGG | 0.278001 | 1_2:-47383117 | None:intergenic |
| TACTCTTTGGCATTTCATAT+TGG | 0.278595 | 1_2:-47378981 | None:intergenic |
| GTGCAGTACAGGCTCTTAAA+AGG | 0.298577 | 1_2:-47382507 | None:intergenic |
| GACAATATACTACCAGTTAA+AGG | 0.305667 | 1_2:-47381166 | None:intergenic |
| ACTCGGCTAGCCACACTAAA+AGG | 0.320293 | 1_2:-47382782 | None:intergenic |
| GGATTTAGATTGTGTACTAT+TGG | 0.323521 | 1_2:-47381002 | None:intergenic |
| TTTGAATGACAAAGATGATT+TGG | 0.323845 | 1_2:+47380413 | Msa0073600:CDS |
| AACAATGGTTATCCTTTAAC+TGG | 0.328692 | 1_2:+47381154 | Msa0073600:CDS |
| TCGGACTCTTCCGAGGAAAA+AGG | 0.330555 | 1_2:-47382211 | None:intergenic |
| TTGTTTCGTCGCTTTGGGTA+TGG | 0.332970 | 1_2:-47382827 | None:intergenic |
| ATAAGAACAGCATCATAAAT+AGG | 0.346429 | 1_2:-47383165 | None:intergenic |
| GATTTAGATTGTGTACTATT+GGG | 0.352272 | 1_2:-47381001 | None:intergenic |
| CTCATCCAGAGATTTAATTT+CGG | 0.364384 | 1_2:-47381023 | None:intergenic |
| ATATACTGTTAGGTCCTTGA+TGG | 0.365380 | 1_2:+47380648 | Msa0073600:intron |
| TTGTAAACTTGAGGAATCAT+TGG | 0.382117 | 1_2:+47383072 | Msa0073600:three_prime_UTR |
| CTTCCATTTCATCATCTTGA+AGG | 0.382415 | 1_2:-47379845 | None:intergenic |
| CTTGATGGATTCCTTGGAGA+TGG | 0.383282 | 1_2:+47380663 | Msa0073600:CDS |
| CAAATAAGCTATGGGGCTTA+AGG | 0.388905 | 1_2:+47378290 | Msa0073600:five_prime_UTR |
| TAGAAATGATCATGTTTCAT+TGG | 0.391808 | 1_2:+47379890 | Msa0073600:CDS |
| TAGGTCCTTGATGGATTCCT+TGG | 0.398304 | 1_2:+47380657 | Msa0073600:intron |
| TGTTTCGTCGCTTTGGGTAT+GGG | 0.398644 | 1_2:-47382826 | None:intergenic |
| TGCTTATGAAGACTCGCCTT+TGG | 0.398646 | 1_2:+47380898 | Msa0073600:CDS |
| TAAATCCGAAATTAAATCTC+TGG | 0.403561 | 1_2:+47381018 | Msa0073600:CDS |
| TGCATGTGGAGGGTATTTCT+TGG | 0.407708 | 1_2:+47380740 | Msa0073600:CDS |
| ATGCTGTTCTTATGTGTTAG+TGG | 0.410241 | 1_2:+47383175 | Msa0073600:three_prime_UTR |
| TACATGCAATCTACATTTGA+TGG | 0.413497 | 1_2:-47381094 | None:intergenic |
| ATTCCTTGGAGATGGATTCC+TGG | 0.426741 | 1_2:+47380671 | Msa0073600:CDS |
| TCTACATTTGATGGTTGAGT+TGG | 0.429648 | 1_2:-47381085 | None:intergenic |
| ATTGATGGCATATCTCAATA+TGG | 0.429927 | 1_2:+47382322 | Msa0073600:CDS |
| CTCCCTTCAAGATGATGAAA+TGG | 0.431701 | 1_2:+47379842 | Msa0073600:CDS |
| AGTCATTCTCCAGGATTTAG+TGG | 0.434512 | 1_2:+47380938 | Msa0073600:CDS |
| CCCTGACATCTGTGGGAGTT+CGG | 0.437149 | 1_2:-47382396 | None:intergenic |
| TATACCTCTGAGTAGGCTTT+CGG | 0.437182 | 1_2:-47381252 | None:intergenic |
| ACCGAACTCCCACAGATGTC+AGG | 0.442198 | 1_2:+47382395 | Msa0073600:CDS |
| TATACAGATAATATATTTGA+AGG | 0.443830 | 1_2:-47383227 | None:intergenic |
| ACATCTTCAACATTAATCAT+TGG | 0.444540 | 1_2:-47378199 | None:intergenic |
| AATGATCATGTTTCATTGGA+TGG | 0.447117 | 1_2:+47379894 | Msa0073600:CDS |
| CACTAAAAGGTAAGATCCGC+GGG | 0.452158 | 1_2:-47382769 | None:intergenic |
| ATGTCCTGCGCTGGCAATAG+AGG | 0.459366 | 1_2:+47378218 | Msa0073600:five_prime_UTR |
| GCATGTGGAGGGTATTTCTT+GGG | 0.460808 | 1_2:+47380741 | Msa0073600:CDS |
| TTTCGGAATCTCTTCTCTCT+AGG | 0.461041 | 1_2:-47381235 | None:intergenic |
| CCTGCGCTGGCAATAGAGGC+TGG | 0.464723 | 1_2:+47378222 | Msa0073600:five_prime_UTR |
| TAGTGTGGCTAGCCGAGTGC+TGG | 0.464765 | 1_2:+47382787 | Msa0073600:CDS |
| ATGATACACATGGTGTCTTC+AGG | 0.468776 | 1_2:+47381056 | Msa0073600:CDS |
| TAAGGATTGCAAACTTCTGC+AGG | 0.471578 | 1_2:-47383099 | None:intergenic |
| ACTTGCGCAAATATTCTTCC+CGG | 0.477272 | 1_2:-47378955 | None:intergenic |
| GGCTAGCCGAGTGCTGGAAT+TGG | 0.480997 | 1_2:+47382793 | Msa0073600:CDS |
| GAAGTGACAAAGTTGATTGA+TGG | 0.483810 | 1_2:+47382307 | Msa0073600:CDS |
| GCTGAATTTCTGTGCAGTAC+AGG | 0.484370 | 1_2:-47382518 | None:intergenic |
| CCGCTACTAGACTCGTCGCT+TGG | 0.485164 | 1_2:-47381397 | None:intergenic |
| CTACTGGTGTAAAACGTAAA+CGG | 0.490582 | 1_2:+47381317 | Msa0073600:CDS |
| ATCGATGCTCAAATAAGCTA+TGG | 0.492077 | 1_2:+47378281 | Msa0073600:five_prime_UTR |
| CAAGAGAATATGCGATGGAC+CGG | 0.494472 | 1_2:+47378936 | Msa0073600:exon |
| AATTCAGAAAGTCATTCTCC+AGG | 0.495964 | 1_2:+47380929 | Msa0073600:CDS |
| TATGGTCCATCTAGTAGTCT+TGG | 0.496122 | 1_2:+47382872 | Msa0073600:CDS |
| GAAGAAAGAATCAAAGGATG+TGG | 0.504028 | 1_2:+47382275 | Msa0073600:CDS |
| TGCTGTTCTTATGTGTTAGT+GGG | 0.504049 | 1_2:+47383176 | Msa0073600:three_prime_UTR |
| TGGTGTCAAATGTTCATCCT+CGG | 0.505342 | 1_2:-47382230 | None:intergenic |
| GGCATATCTCAATATGGAGT+TGG | 0.506463 | 1_2:+47382328 | Msa0073600:CDS |
| TCGATGCTCAAATAAGCTAT+GGG | 0.507701 | 1_2:+47378282 | Msa0073600:five_prime_UTR |
| GAAATACCCTCCACATGCAT+TGG | 0.510672 | 1_2:-47380736 | None:intergenic |
| CTCAATATGGAGTTGGTCGA+TGG | 0.518114 | 1_2:+47382335 | Msa0073600:CDS |
| CTGCGCTGGCAATAGAGGCT+GGG | 0.518211 | 1_2:+47378223 | Msa0073600:five_prime_UTR |
| TTCCATTTCATCATCTTGAA+GGG | 0.518648 | 1_2:-47379844 | None:intergenic |
| TGGGAGTGATTGAGTACAGC+TGG | 0.519566 | 1_2:+47378242 | Msa0073600:five_prime_UTR |
| AGATTCACCAGTGAAAACTA+TGG | 0.522871 | 1_2:+47382854 | Msa0073600:CDS |
| ATCACAATACTGAAGGGGTT+AGG | 0.524670 | 1_2:-47383125 | None:intergenic |
| GTTGACATCAATGATCTTGA+AGG | 0.524785 | 1_2:+47380699 | Msa0073600:CDS |
| TGAAGACACCATGTGTATCA+TGG | 0.526838 | 1_2:-47381054 | None:intergenic |
| ATTTCATCATCTTGAAGGGA+GGG | 0.528637 | 1_2:-47379840 | None:intergenic |
| TAGTATATTGTCTTGTAAGA+AGG | 0.534253 | 1_2:+47381177 | Msa0073600:CDS |
| GTGCTACTTCCACTAAATCC+TGG | 0.534846 | 1_2:-47380947 | None:intergenic |
| AATTTCAAATTGTAAACTTG+AGG | 0.538777 | 1_2:+47383063 | Msa0073600:three_prime_UTR |
| ATACAGATAATATATTTGAA+GGG | 0.539374 | 1_2:-47383226 | None:intergenic |
| AACATTAATCATTGGAAGTG+AGG | 0.541344 | 1_2:-47378191 | None:intergenic |
| CAAGAAGCATCCAAAGAAAG+AGG | 0.542469 | 1_2:+47381456 | Msa0073600:CDS |
| TGAGCATCGATACATCTTGA+AGG | 0.542478 | 1_2:-47378269 | None:intergenic |
| TTTAGTGGAAGTAGCACTGT+TGG | 0.554801 | 1_2:+47380953 | Msa0073600:CDS |
| CCAGCCTCTATTGCCAGCGC+AGG | 0.555316 | 1_2:-47378222 | None:intergenic |
| TACAGATAATATATTTGAAG+GGG | 0.557229 | 1_2:-47383225 | None:intergenic |
| CATTTCATCATCTTGAAGGG+AGG | 0.558348 | 1_2:-47379841 | None:intergenic |
| AAGAAAATCACAATACTGAA+GGG | 0.561026 | 1_2:-47383131 | None:intergenic |
| AAGATCGAAGAAAGAATCAA+AGG | 0.561345 | 1_2:+47382269 | Msa0073600:CDS |
| CGGAATCTCTTCTCTCTAGG+TGG | 0.568097 | 1_2:-47381232 | None:intergenic |
| CATTGATGTCAACATCATCC+AGG | 0.573797 | 1_2:-47380689 | None:intergenic |
| AGTGGAAGTAGCACTGTTGG+TGG | 0.573972 | 1_2:+47380956 | Msa0073600:CDS |
| CAAAGATGATTTGGAACTAG+AGG | 0.577956 | 1_2:+47380422 | Msa0073600:CDS |
| TCTTCAATATACCTCTGAGT+AGG | 0.580112 | 1_2:-47381259 | None:intergenic |
| GTTTAGCCAATTCCAGCACT+CGG | 0.584124 | 1_2:-47382799 | None:intergenic |
| GAGCATCGATACATCTTGAA+GGG | 0.585635 | 1_2:-47378268 | None:intergenic |
| GTGGAAGTAGCACTGTTGGT+GGG | 0.586298 | 1_2:+47380957 | Msa0073600:CDS |
| CATCTCCAAGGAATCCATCA+AGG | 0.593123 | 1_2:-47380662 | None:intergenic |
| AAGAGAATATGCGATGGACC+GGG | 0.599053 | 1_2:+47378937 | Msa0073600:exon |
| TACAGTACCCTGACATCTGT+GGG | 0.600151 | 1_2:-47382403 | None:intergenic |
| CAAGAAAATCACAATACTGA+AGG | 0.602552 | 1_2:-47383132 | None:intergenic |
| TTCATCCTCGGACTCTTCCG+AGG | 0.613472 | 1_2:-47382218 | None:intergenic |
| ATCATCTTTGTCATTCAAAG+CGG | 0.620385 | 1_2:-47380409 | None:intergenic |
| CCGAACTCCCACAGATGTCA+GGG | 0.622447 | 1_2:+47382396 | Msa0073600:CDS |
| GAAGACACCATGTGTATCAT+GGG | 0.623115 | 1_2:-47381053 | None:intergenic |
| TATGATTTATGCAGGACAAG+TGG | 0.628551 | 1_2:+47382479 | Msa0073600:intron |
| GTACAGTACCCTGACATCTG+TGG | 0.628681 | 1_2:-47382404 | None:intergenic |
| AGAAAATCACAATACTGAAG+GGG | 0.638151 | 1_2:-47383130 | None:intergenic |
| TTGGCAAAAGAAATTTACGT+AGG | 0.641798 | 1_2:+47382891 | Msa0073600:CDS |
| TTCTGCTTGTAAATCTACAG+AGG | 0.644121 | 1_2:+47383034 | Msa0073600:three_prime_UTR |
| CATCCAGGAATCCATCTCCA+AGG | 0.645479 | 1_2:-47380674 | None:intergenic |
| ACACTAAAAGGTAAGATCCG+CGG | 0.650416 | 1_2:-47382770 | None:intergenic |
| CATCTGCATGAGTTGAACAA+TGG | 0.658137 | 1_2:+47381139 | Msa0073600:CDS |
| ATATTCAAGAGAATATGCGA+TGG | 0.667822 | 1_2:+47378931 | Msa0073600:exon |
| ATGTTGAAGATGTCCTGCGC+TGG | 0.671373 | 1_2:+47378209 | Msa0073600:five_prime_UTR |
| CGATGCTCAAATAAGCTATG+GGG | 0.693607 | 1_2:+47378283 | Msa0073600:five_prime_UTR |
| ACAGAAATTCAGCAAGAACG+AGG | 0.709656 | 1_2:+47382528 | Msa0073600:CDS |
| ACAGTCACCCATGATACACA+TGG | 0.714461 | 1_2:+47381046 | Msa0073600:CDS |
| AAGGTTGAGATACTAGAACA+TGG | 0.716208 | 1_2:+47380875 | Msa0073600:CDS |
| CCAAGCGACGAGTCTAGTAG+CGG | 0.719801 | 1_2:+47381397 | Msa0073600:CDS |
| GATTCCGAAAGCCTACTCAG+AGG | 0.733180 | 1_2:+47381248 | Msa0073600:CDS |
| CTGGTGTAAAACGTAAACGG+CGG | 0.772509 | 1_2:+47381320 | Msa0073600:CDS |
| ACTAAAAGGTAAGATCCGCG+GGG | 0.799147 | 1_2:-47382768 | None:intergenic |
| AAAATGATGAGACTGCCCCG+CGG | 0.836893 | 1_2:+47382753 | Msa0073600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAATTAACACAAA+TGG | - | chr1_2:47380036-47380055 | None:intergenic | 10.0% |
| !!! | TTGTGTTAATTTATTTTATT+TGG | + | chr1_2:47380037-47380056 | Msa0073600:intron | 10.0% |
| !!! | AAAATAAATTTTATGAGAAA+TGG | - | chr1_2:47382687-47382706 | None:intergenic | 10.0% |
| !!! | AAATCTAATATATGGATTTT+TGG | + | chr1_2:47378064-47378083 | Msa0073600:five_prime_UTR | 15.0% |
| !!! | ATAAACATTTATTTTATGTG+TGG | + | chr1_2:47378858-47378877 | Msa0073600:intron | 15.0% |
| !!! | TAAACATTTATTTTATGTGT+GGG | + | chr1_2:47378859-47378878 | Msa0073600:intron | 15.0% |
| !!! | TACCTTTAAAATATAATGTT+TGG | + | chr1_2:47380215-47380234 | Msa0073600:intron | 15.0% |
| !!! | AACCAAACATTATATTTTAA+AGG | - | chr1_2:47380220-47380239 | None:intergenic | 15.0% |
| !! | ATAACTTATTATATTTGTGA+TGG | + | chr1_2:47380242-47380261 | Msa0073600:intron | 15.0% |
| !! | TGCATTAAATTTATTACTTA+TGG | + | chr1_2:47380515-47380534 | Msa0073600:intron | 15.0% |
| !! | TTGATAAAATATATACTGTT+AGG | + | chr1_2:47380638-47380657 | Msa0073600:intron | 15.0% |
| !! | AAAAAATCTTCATTTACTAA+AGG | - | chr1_2:47381518-47381537 | None:intergenic | 15.0% |
| !! | ATATTTAGAAAACACAAATT+TGG | - | chr1_2:47382462-47382481 | None:intergenic | 15.0% |
| !!! | TTCTCATAAAATTTATTTTG+AGG | + | chr1_2:47382688-47382707 | Msa0073600:intron | 15.0% |
| !! | ATACAGATAATATATTTGAA+GGG | - | chr1_2:47383229-47383248 | None:intergenic | 15.0% |
| !! | TATACAGATAATATATTTGA+AGG | - | chr1_2:47383230-47383249 | None:intergenic | 15.0% |
| !!! | TGGTTCTAAAATCTAATATA+TGG | + | chr1_2:47378056-47378075 | Msa0073600:five_prime_UTR | 20.0% |
| !!! | TGATTCGAAATATCATTTTA+TGG | + | chr1_2:47378100-47378119 | Msa0073600:five_prime_UTR | 20.0% |
| !! | ATACATATAGTTTCGAATAT+TGG | - | chr1_2:47378169-47378188 | None:intergenic | 20.0% |
| !!! | ATGCAAAATATCAACTATTT+TGG | + | chr1_2:47379147-47379166 | Msa0073600:intron | 20.0% |
| !! | AACTATTGTAATTCATTTCA+TGG | + | chr1_2:47379194-47379213 | Msa0073600:intron | 20.0% |
| !!! | AAACATTAATATGCTAGTTT+AGG | + | chr1_2:47379308-47379327 | Msa0073600:intron | 20.0% |
| !!! | GCTTTTTTACATCATATATA+TGG | - | chr1_2:47379496-47379515 | None:intergenic | 20.0% |
| !! | GCAGTTTATTTAAATAGTAA+AGG | - | chr1_2:47379734-47379753 | None:intergenic | 20.0% |
| !!! | TCAATTCTTTAGTTTTTGTA+TGG | - | chr1_2:47381369-47381388 | None:intergenic | 20.0% |
| !!! | TTTTTAATGGCAATACAAAA+GGG | - | chr1_2:47381560-47381579 | None:intergenic | 20.0% |
| !!! | TTTTTTAATGGCAATACAAA+AGG | - | chr1_2:47381561-47381580 | None:intergenic | 20.0% |
| !!! | CAATTTGTTTTATCAAACAA+CGG | - | chr1_2:47382159-47382178 | None:intergenic | 20.0% |
| !! | TTTCTAAATATGATTTATGC+AGG | + | chr1_2:47382471-47382490 | Msa0073600:intron | 20.0% |
| !! | AGTTAATGTAAACAATCATT+TGG | + | chr1_2:47382714-47382733 | Msa0073600:intron | 20.0% |
| !!! | AAAGAATCTTGTTGAAATTT+TGG | + | chr1_2:47382973-47382992 | Msa0073600:three_prime_UTR | 20.0% |
| !! | AATTTCAAATTGTAAACTTG+AGG | + | chr1_2:47383063-47383082 | Msa0073600:three_prime_UTR | 20.0% |
| !! | TACAGATAATATATTTGAAG+GGG | - | chr1_2:47383228-47383247 | None:intergenic | 20.0% |
| !!! | AAATAGACGAGCTTTTATTT+TGG | + | chr1_2:47378036-47378055 | Msa0073600:five_prime_UTR | 25.0% |
| !!! | TCTAATATATGGATTTTTGG+TGG | + | chr1_2:47378067-47378086 | Msa0073600:five_prime_UTR | 25.0% |
| !! | TCATTTTATGGTATTGCTTA+TGG | + | chr1_2:47378112-47378131 | Msa0073600:five_prime_UTR | 25.0% |
| ! | ACATCTTCAACATTAATCAT+TGG | - | chr1_2:47378202-47378221 | None:intergenic | 25.0% |
| !! | ATTAGATTTGTTTGTGTAGA+TGG | + | chr1_2:47378350-47378369 | Msa0073600:intron | 25.0% |
| !!! | GACAATCATATAAGAGTATT+TGG | - | chr1_2:47378637-47378656 | None:intergenic | 25.0% |
| ! | TGAAAGATATACACATTACA+CGG | - | chr1_2:47378764-47378783 | None:intergenic | 25.0% |
| ! | TATATGATAAATGAGCTTAG+AGG | - | chr1_2:47379031-47379050 | None:intergenic | 25.0% |
| !!! | TCAACTATTTTGGAATTAAG+CGG | + | chr1_2:47379157-47379176 | Msa0073600:intron | 25.0% |
| ! | ATTGTAATTCATTTCATGGA+TGG | + | chr1_2:47379198-47379217 | Msa0073600:intron | 25.0% |
| ! | ATACTCAAGCTTGTAAAAAT+TGG | - | chr1_2:47379265-47379284 | None:intergenic | 25.0% |
| ! | TATGGTATATTAGTCATGTA+GGG | + | chr1_2:47379430-47379449 | Msa0073600:intron | 25.0% |
| ! | AAATGTCTCCATTATATTCT+AGG | + | chr1_2:47379468-47379487 | Msa0073600:intron | 25.0% |
| ! | AATGTCTCCATTATATTCTA+GGG | + | chr1_2:47379469-47379488 | Msa0073600:intron | 25.0% |
| ! | ATGATGTAAAAAAGCTGATT+AGG | + | chr1_2:47379501-47379520 | Msa0073600:intron | 25.0% |
| ! | CCAAACACTTAAATATGTTA+CGG | - | chr1_2:47379606-47379625 | None:intergenic | 25.0% |
| ! | ATCTGGTATATTGAAGATTA+AGG | - | chr1_2:47379629-47379648 | None:intergenic | 25.0% |
| ! | AATGAAACATGATCATTTCT+AGG | - | chr1_2:47379891-47379910 | None:intergenic | 25.0% |
| ! | TAGAAATGATCATGTTTCAT+TGG | + | chr1_2:47379890-47379909 | Msa0073600:CDS | 25.0% |
| ! | AATCAAAAAGAACAACTTCT+AGG | - | chr1_2:47379970-47379989 | None:intergenic | 25.0% |
| ! | CAAGTCTATTTATTAGCAAA+TGG | + | chr1_2:47379998-47380017 | Msa0073600:intron | 25.0% |
| ! | TAATATTTGCTTTCATGCTT+TGG | + | chr1_2:47380292-47380311 | Msa0073600:intron | 25.0% |
| ! | GATATAACATACATGTAAAC+AGG | - | chr1_2:47380327-47380346 | None:intergenic | 25.0% |
| ! | TTTGAATGACAAAGATGATT+TGG | + | chr1_2:47380413-47380432 | Msa0073600:CDS | 25.0% |
| ! | CAGATTTAACTGAAAAATAC+AGG | - | chr1_2:47380497-47380516 | None:intergenic | 25.0% |
| !! | TTTTACTATGATGCTTTCAT+AGG | + | chr1_2:47380784-47380803 | Msa0073600:intron | 25.0% |
| ! | CAAATCAAAATCTGTAGATT+GGG | - | chr1_2:47380852-47380871 | None:intergenic | 25.0% |
| !! | TCTGAATTTGAATTTTCCAA+AGG | - | chr1_2:47380917-47380936 | None:intergenic | 25.0% |
| ! | GATTTAGATTGTGTACTATT+GGG | - | chr1_2:47381004-47381023 | None:intergenic | 25.0% |
| ! | TAAATCCGAAATTAAATCTC+TGG | + | chr1_2:47381018-47381037 | Msa0073600:CDS | 25.0% |
| ! | TAGTATATTGTCTTGTAAGA+AGG | + | chr1_2:47381177-47381196 | Msa0073600:CDS | 25.0% |
| !!! | AAAGAAAAAGTATCAACTAC+TGG | + | chr1_2:47381301-47381320 | Msa0073600:CDS | 25.0% |
| !!! | AAGAGGTACTATTTTCTTTT+TGG | + | chr1_2:47381473-47381492 | Msa0073600:intron | 25.0% |
| !!! | AGAGGTACTATTTTCTTTTT+GGG | + | chr1_2:47381474-47381493 | Msa0073600:intron | 25.0% |
| ! | TATAAATTCTGCAATTCTGA+AGG | + | chr1_2:47381951-47381970 | Msa0073600:intron | 25.0% |
| !!! | TCTACAACTGATTTTGTAAT+TGG | + | chr1_2:47381974-47381993 | Msa0073600:intron | 25.0% |
| !!! | AAGTTTTTGTTTTCTTCTGA+AGG | + | chr1_2:47382370-47382389 | Msa0073600:CDS | 25.0% |
| ! | AAAACACAAATTTGGAAGAA+AGG | - | chr1_2:47382454-47382473 | None:intergenic | 25.0% |
| ! | ACAGAATAAAGTTTCAGAAA+AGG | - | chr1_2:47382569-47382588 | None:intergenic | 25.0% |
| ! | ACTAATTACTTAATGTGACA+TGG | + | chr1_2:47382629-47382648 | Msa0073600:intron | 25.0% |
| ! | TATGAGAAATGGCATATTTA+CGG | - | chr1_2:47382676-47382695 | None:intergenic | 25.0% |
| ! | AAGAAAATCACAATACTGAA+GGG | - | chr1_2:47383134-47383153 | None:intergenic | 25.0% |
| ! | ATAAGAACAGCATCATAAAT+AGG | - | chr1_2:47383168-47383187 | None:intergenic | 25.0% |
| AACATTAATCATTGGAAGTG+AGG | - | chr1_2:47378194-47378213 | None:intergenic | 30.0% | |
| AAATCTAATGATCCTATGTG+TGG | - | chr1_2:47378339-47378358 | None:intergenic | 30.0% | |
| ATTTGTTTGTGTAGATGGAA+TGG | + | chr1_2:47378355-47378374 | Msa0073600:intron | 30.0% | |
| CAGTTGAAATGTAGTTACAA+AGG | + | chr1_2:47378428-47378447 | Msa0073600:intron | 30.0% | |
| TTGAAATGTAGTTACAAAGG+CGG | + | chr1_2:47378431-47378450 | Msa0073600:intron | 30.0% | |
| AGTATAGAAAAGGCTATTCT+TGG | + | chr1_2:47378460-47378479 | Msa0073600:intron | 30.0% | |
| AAGGTAAAACCTGATTACAT+GGG | - | chr1_2:47378516-47378535 | None:intergenic | 30.0% | |
| TAAGGTAAAACCTGATTACA+TGG | - | chr1_2:47378517-47378536 | None:intergenic | 30.0% | |
| ! | ATGTAATCAGGTTTTACCTT+AGG | + | chr1_2:47378516-47378535 | Msa0073600:intron | 30.0% |
| !!! | TTATTTTTGCTTCTCATCCA+AGG | + | chr1_2:47378674-47378693 | Msa0073600:intron | 30.0% |
| GAAAGATATACACATTACAC+GGG | - | chr1_2:47378763-47378782 | None:intergenic | 30.0% | |
| ATATTCAAGAGAATATGCGA+TGG | + | chr1_2:47378931-47378950 | Msa0073600:exon | 30.0% | |
| TACTCTTTGGCATTTCATAT+TGG | - | chr1_2:47378984-47379003 | None:intergenic | 30.0% | |
| ATATGAAATGCCAAAGAGTA+AGG | + | chr1_2:47378984-47379003 | Msa0073600:intron | 30.0% | |
| TGCTTAAATGTGGCAAATTA+TGG | - | chr1_2:47379079-47379098 | None:intergenic | 30.0% | |
| !!! | CAACTATTTTGGAATTAAGC+GGG | + | chr1_2:47379158-47379177 | Msa0073600:intron | 30.0% |
| ATGGAAATAATTCGTTACAG+TGG | + | chr1_2:47379217-47379236 | Msa0073600:intron | 30.0% | |
| GTTCTCACAGAATATAACAA+TGG | - | chr1_2:47379347-47379366 | None:intergenic | 30.0% | |
| TTGTTGGAAAATGTGTCTAA+TGG | + | chr1_2:47379390-47379409 | Msa0073600:intron | 30.0% | |
| TGTTGGAAAATGTGTCTAAT+GGG | + | chr1_2:47379391-47379410 | Msa0073600:intron | 30.0% | |
| GTATGGTATATTAGTCATGT+AGG | + | chr1_2:47379429-47379448 | Msa0073600:intron | 30.0% | |
| ATATGGACCCTAGAATATAA+TGG | - | chr1_2:47379479-47379498 | None:intergenic | 30.0% | |
| AAAAAAGCTGATTAGGAACT+TGG | + | chr1_2:47379508-47379527 | Msa0073600:intron | 30.0% | |
| CCGTAACATATTTAAGTGTT+TGG | + | chr1_2:47379603-47379622 | Msa0073600:intron | 30.0% | |
| ! | GATCTCTTTCAAATTTTCCT+AGG | + | chr1_2:47379794-47379813 | Msa0073600:intron | 30.0% |
| TTCCATTTCATCATCTTGAA+GGG | - | chr1_2:47379847-47379866 | None:intergenic | 30.0% | |
| AATGATCATGTTTCATTGGA+TGG | + | chr1_2:47379894-47379913 | Msa0073600:CDS | 30.0% | |
| ATTGTTCATCAACAAGATAC+AGG | - | chr1_2:47380063-47380082 | None:intergenic | 30.0% | |
| ! | TGTATCTTGTTGATGAACAA+TGG | + | chr1_2:47380062-47380081 | Msa0073600:intron | 30.0% |
| TAAAATGCTGACGTGAAAAA+TGG | + | chr1_2:47380096-47380115 | Msa0073600:intron | 30.0% | |
| ATCATCTTTGTCATTCAAAG+CGG | - | chr1_2:47380412-47380431 | None:intergenic | 30.0% | |
| CATGCAATTGACATTAGAAT+AGG | - | chr1_2:47380560-47380579 | None:intergenic | 30.0% | |
| AAAGGACACAGCAATTTAAA+CGG | - | chr1_2:47380597-47380616 | None:intergenic | 30.0% | |
| TATATTCACAACCACACAAA+AGG | - | chr1_2:47380615-47380634 | None:intergenic | 30.0% | |
| CCAAATCAAAATCTGTAGAT+TGG | - | chr1_2:47380853-47380872 | None:intergenic | 30.0% | |
| !!! | CCAATCTACAGATTTTGATT+TGG | + | chr1_2:47380850-47380869 | Msa0073600:intron | 30.0% |
| !!! | TACAGATTTTGATTTGGCAA+AGG | + | chr1_2:47380856-47380875 | Msa0073600:intron | 30.0% |
| GGATTTAGATTGTGTACTAT+TGG | - | chr1_2:47381005-47381024 | None:intergenic | 30.0% | |
| ! | CTCATCCAGAGATTTAATTT+CGG | - | chr1_2:47381026-47381045 | None:intergenic | 30.0% |
| TACATGCAATCTACATTTGA+TGG | - | chr1_2:47381097-47381116 | None:intergenic | 30.0% | |
| AACAATGGTTATCCTTTAAC+TGG | + | chr1_2:47381154-47381173 | Msa0073600:CDS | 30.0% | |
| GACAATATACTACCAGTTAA+AGG | - | chr1_2:47381169-47381188 | None:intergenic | 30.0% | |
| GAAAATAGTACCTCTTTCTT+TGG | - | chr1_2:47381469-47381488 | None:intergenic | 30.0% | |
| !! | GAGGTACTATTTTCTTTTTG+GGG | + | chr1_2:47381475-47381494 | Msa0073600:intron | 30.0% |
| ! | GTTTTACGTTTTCTATGTTC+TGG | + | chr1_2:47381636-47381655 | Msa0073600:intron | 30.0% |
| TTCACACATCAATTCATTAG+GGG | - | chr1_2:47381761-47381780 | None:intergenic | 30.0% | |
| CTTCACACATCAATTCATTA+GGG | - | chr1_2:47381762-47381781 | None:intergenic | 30.0% | |
| ACTTCACACATCAATTCATT+AGG | - | chr1_2:47381763-47381782 | None:intergenic | 30.0% | |
| ATCATTTATCATCTTCATCG+TGG | + | chr1_2:47381888-47381907 | Msa0073600:intron | 30.0% | |
| ! | TTGGACAAGTTGAAACAAAA+TGG | + | chr1_2:47381993-47382012 | Msa0073600:intron | 30.0% |
| GTTGAAACAAAATGGTTACA+TGG | + | chr1_2:47382001-47382020 | Msa0073600:intron | 30.0% | |
| GATAACTGCATATCAATGTA+AGG | + | chr1_2:47382093-47382112 | Msa0073600:intron | 30.0% | |
| AAGATCGAAGAAAGAATCAA+AGG | + | chr1_2:47382269-47382288 | Msa0073600:CDS | 30.0% | |
| ! | ATTGATGGCATATCTCAATA+TGG | + | chr1_2:47382322-47382341 | Msa0073600:CDS | 30.0% |
| ATCAAATCTTCACGAATCAT+AGG | + | chr1_2:47382591-47382610 | Msa0073600:intron | 30.0% | |
| ! | AACAATCATTTGGTGATTGT+AGG | + | chr1_2:47382724-47382743 | Msa0073600:intron | 30.0% |
| TTGGCAAAAGAAATTTACGT+AGG | + | chr1_2:47382891-47382910 | Msa0073600:CDS | 30.0% | |
| !! | CAACAAGATTCTTTTGACTA+TGG | - | chr1_2:47382967-47382986 | None:intergenic | 30.0% |
| TTGTAAACTTGAGGAATCAT+TGG | + | chr1_2:47383072-47383091 | Msa0073600:three_prime_UTR | 30.0% | |
| AGAAAATCACAATACTGAAG+GGG | - | chr1_2:47383133-47383152 | None:intergenic | 30.0% | |
| CAAGAAAATCACAATACTGA+AGG | - | chr1_2:47383135-47383154 | None:intergenic | 30.0% | |
| ! | CTTCAGTATTGTGATTTTCT+TGG | + | chr1_2:47383133-47383152 | Msa0073600:three_prime_UTR | 30.0% |
| !!! | ATCTGCTACATTTTAGCTAA+AGG | + | chr1_2:47383273-47383292 | Msa0073600:intron | 30.0% |
| !!! | TCTGCTACATTTTAGCTAAA+GGG | + | chr1_2:47383274-47383293 | Msa0073600:intron | 30.0% |
| ATCGATGCTCAAATAAGCTA+TGG | + | chr1_2:47378281-47378300 | Msa0073600:five_prime_UTR | 35.0% | |
| TCGATGCTCAAATAAGCTAT+GGG | + | chr1_2:47378282-47378301 | Msa0073600:five_prime_UTR | 35.0% | |
| TTCAACTGTACTAGATCATG+AGG | - | chr1_2:47378416-47378435 | None:intergenic | 35.0% | |
| TGAAATGTAGTTACAAAGGC+GGG | + | chr1_2:47378432-47378451 | Msa0073600:intron | 35.0% | |
| ! | GAATAGCCTTTTCTATACTG+AGG | - | chr1_2:47378459-47378478 | None:intergenic | 35.0% |
| !! | AAGGCTATTCTTGGATTAGT+AGG | + | chr1_2:47378469-47378488 | Msa0073600:intron | 35.0% |
| !! | AGGCTATTCTTGGATTAGTA+GGG | + | chr1_2:47378470-47378489 | Msa0073600:intron | 35.0% |
| ACGTTTAATCCCATGTAATC+AGG | + | chr1_2:47378504-47378523 | Msa0073600:intron | 35.0% | |
| TAAAACTGTTTGTGCAACCT+TGG | - | chr1_2:47378694-47378713 | None:intergenic | 35.0% | |
| CTAATGCACATTGAAATTGC+AGG | + | chr1_2:47378905-47378924 | Msa0073600:intron | 35.0% | |
| CAACTGAAATCCTTACTCTT+TGG | - | chr1_2:47378997-47379016 | None:intergenic | 35.0% | |
| GTGGCAAATTATGGATGAAT+GGG | - | chr1_2:47379070-47379089 | None:intergenic | 35.0% | |
| TGTGGCAAATTATGGATGAA+TGG | - | chr1_2:47379071-47379090 | None:intergenic | 35.0% | |
| CAGACATACTTGCTTAAATG+TGG | - | chr1_2:47379089-47379108 | None:intergenic | 35.0% | |
| AATTTGTCAGAGCTGATTGT+TGG | + | chr1_2:47379374-47379393 | Msa0073600:intron | 35.0% | |
| GGAGATTGTTGAGATATGTA+TGG | + | chr1_2:47379412-47379431 | Msa0073600:intron | 35.0% | |
| TGCTTTAACCGATACCATAT+GGG | - | chr1_2:47379762-47379781 | None:intergenic | 35.0% | |
| ATGCTTTAACCGATACCATA+TGG | - | chr1_2:47379763-47379782 | None:intergenic | 35.0% | |
| ATTTCATCATCTTGAAGGGA+GGG | - | chr1_2:47379843-47379862 | None:intergenic | 35.0% | |
| CTTCCATTTCATCATCTTGA+AGG | - | chr1_2:47379848-47379867 | None:intergenic | 35.0% | |
| TATCTCCATCAACAATACTC+AGG | - | chr1_2:47380143-47380162 | None:intergenic | 35.0% | |
| ! | TATTGTTGATGGAGATAGCT+AGG | + | chr1_2:47380146-47380165 | Msa0073600:intron | 35.0% |
| ! | CAAAGATGATTTGGAACTAG+AGG | + | chr1_2:47380422-47380441 | Msa0073600:CDS | 35.0% |
| TAGAGGTAGTTGTCTAAACT+CGG | + | chr1_2:47380439-47380458 | Msa0073600:intron | 35.0% | |
| TGACATTAGAATAGGCACAA+AGG | - | chr1_2:47380552-47380571 | None:intergenic | 35.0% | |
| ! | CAGCAATTTAAACGGATTCA+AGG | - | chr1_2:47380589-47380608 | None:intergenic | 35.0% |
| ATATACTGTTAGGTCCTTGA+TGG | + | chr1_2:47380648-47380667 | Msa0073600:intron | 35.0% | |
| GTTGACATCAATGATCTTGA+AGG | + | chr1_2:47380699-47380718 | Msa0073600:CDS | 35.0% | |
| AAGGTTGAGATACTAGAACA+TGG | + | chr1_2:47380875-47380894 | Msa0073600:CDS | 35.0% | |
| AATTCAGAAAGTCATTCTCC+AGG | + | chr1_2:47380929-47380948 | Msa0073600:CDS | 35.0% | |
| ! | TCTACATTTGATGGTTGAGT+TGG | - | chr1_2:47381088-47381107 | None:intergenic | 35.0% |
| TCTTCAATATACCTCTGAGT+AGG | - | chr1_2:47381262-47381281 | None:intergenic | 35.0% | |
| CTACTGGTGTAAAACGTAAA+CGG | + | chr1_2:47381317-47381336 | Msa0073600:CDS | 35.0% | |
| !!! | CGTTTTCTATGTTCTGGTTT+TGG | + | chr1_2:47381642-47381661 | Msa0073600:intron | 35.0% |
| GGTCATTCAACTAGATTTAC+AGG | - | chr1_2:47381740-47381759 | None:intergenic | 35.0% | |
| AGCATAACGAAGCAAATTCA+TGG | - | chr1_2:47381807-47381826 | None:intergenic | 35.0% | |
| AAGGACCTAATATTCATGTC+TGG | + | chr1_2:47382112-47382131 | Msa0073600:intron | 35.0% | |
| GAACATTTGACACCAAAAAG+AGG | + | chr1_2:47382238-47382257 | Msa0073600:CDS | 35.0% | |
| ! | TCTTTTGATCTGCCTCTTTT+TGG | - | chr1_2:47382253-47382272 | None:intergenic | 35.0% |
| GAAGAAAGAATCAAAGGATG+TGG | + | chr1_2:47382275-47382294 | Msa0073600:CDS | 35.0% | |
| ! | GAAGTGACAAAGTTGATTGA+TGG | + | chr1_2:47382307-47382326 | Msa0073600:CDS | 35.0% |
| TATGATTTATGCAGGACAAG+TGG | + | chr1_2:47382479-47382498 | Msa0073600:intron | 35.0% | |
| !! | TCTTTTTGTTTCGTCGCTTT+GGG | - | chr1_2:47382835-47382854 | None:intergenic | 35.0% |
| AGATTCACCAGTGAAAACTA+TGG | + | chr1_2:47382854-47382873 | Msa0073600:CDS | 35.0% | |
| !! | TCTTTTGACTATGGATTCAC+TGG | - | chr1_2:47382958-47382977 | None:intergenic | 35.0% |
| TTCTGCTTGTAAATCTACAG+AGG | + | chr1_2:47383034-47383053 | Msa0073600:three_prime_UTR | 35.0% | |
| ! | CAGTATTGTGATTTTCTTGG+TGG | + | chr1_2:47383136-47383155 | Msa0073600:three_prime_UTR | 35.0% |
| ATGCTGTTCTTATGTGTTAG+TGG | + | chr1_2:47383175-47383194 | Msa0073600:three_prime_UTR | 35.0% | |
| TGCTGTTCTTATGTGTTAGT+GGG | + | chr1_2:47383176-47383195 | Msa0073600:three_prime_UTR | 35.0% | |
| !! | GAGCATCGATACATCTTGAA+GGG | - | chr1_2:47378271-47378290 | None:intergenic | 40.0% |
| !! | TGAGCATCGATACATCTTGA+AGG | - | chr1_2:47378272-47378291 | None:intergenic | 40.0% |
| CGATGCTCAAATAAGCTATG+GGG | + | chr1_2:47378283-47378302 | Msa0073600:five_prime_UTR | 40.0% | |
| CAAATAAGCTATGGGGCTTA+AGG | + | chr1_2:47378290-47378309 | Msa0073600:five_prime_UTR | 40.0% | |
| AATGCTTTGATGCCACACAT+AGG | + | chr1_2:47378324-47378343 | Msa0073600:intron | 40.0% | |
| TGTTTGTGTAGATGGAATGG+TGG | + | chr1_2:47378358-47378377 | Msa0073600:intron | 40.0% | |
| TTTATTGCCAAGCATGCCTA+AGG | - | chr1_2:47378535-47378554 | None:intergenic | 40.0% | |
| ACTTGCGCAAATATTCTTCC+CGG | - | chr1_2:47378958-47378977 | None:intergenic | 40.0% | |
| ATGTAATCAATCCCACCTAG+TGG | - | chr1_2:47379570-47379589 | None:intergenic | 40.0% | |
| ACTAGGTGGGATTGATTACA+TGG | + | chr1_2:47379569-47379588 | Msa0073600:intron | 40.0% | |
| GTCAAAATATGAAGCTTGCG+AGG | - | chr1_2:47379652-47379671 | None:intergenic | 40.0% | |
| ATAAACTGCAAGTGCCCATA+TGG | + | chr1_2:47379745-47379764 | Msa0073600:intron | 40.0% | |
| TGATTCATCAAGCTGAACCT+AGG | - | chr1_2:47379814-47379833 | None:intergenic | 40.0% | |
| CATTTCATCATCTTGAAGGG+AGG | - | chr1_2:47379844-47379863 | None:intergenic | 40.0% | |
| CTCCCTTCAAGATGATGAAA+TGG | + | chr1_2:47379842-47379861 | Msa0073600:CDS | 40.0% | |
| !! | TGTGATGGATAAAGCTGTGT+TGG | + | chr1_2:47380257-47380276 | Msa0073600:intron | 40.0% |
| TTGTCTAAACTCGGTTACTG+TGG | + | chr1_2:47380448-47380467 | Msa0073600:intron | 40.0% | |
| TGTCTAAACTCGGTTACTGT+GGG | + | chr1_2:47380449-47380468 | Msa0073600:intron | 40.0% | |
| ! | AATTGCTGTGTCCTTTTGTG+TGG | + | chr1_2:47380601-47380620 | Msa0073600:intron | 40.0% |
| CATTGATGTCAACATCATCC+AGG | - | chr1_2:47380692-47380711 | None:intergenic | 40.0% | |
| ! | GATGTTTTCTCCAATGCATG+TGG | + | chr1_2:47380726-47380745 | Msa0073600:CDS | 40.0% |
| ! | TTTTCTCCAATGCATGTGGA+GGG | + | chr1_2:47380730-47380749 | Msa0073600:CDS | 40.0% |
| AGTCATTCTCCAGGATTTAG+TGG | + | chr1_2:47380938-47380957 | Msa0073600:CDS | 40.0% | |
| TTTAGTGGAAGTAGCACTGT+TGG | + | chr1_2:47380953-47380972 | Msa0073600:CDS | 40.0% | |
| GAAGACACCATGTGTATCAT+GGG | - | chr1_2:47381056-47381075 | None:intergenic | 40.0% | |
| TGAAGACACCATGTGTATCA+TGG | - | chr1_2:47381057-47381076 | None:intergenic | 40.0% | |
| ATGATACACATGGTGTCTTC+AGG | + | chr1_2:47381056-47381075 | Msa0073600:CDS | 40.0% | |
| ! | CATCTGCATGAGTTGAACAA+TGG | + | chr1_2:47381139-47381158 | Msa0073600:CDS | 40.0% |
| TTTCGGAATCTCTTCTCTCT+AGG | - | chr1_2:47381238-47381257 | None:intergenic | 40.0% | |
| TATACCTCTGAGTAGGCTTT+CGG | - | chr1_2:47381255-47381274 | None:intergenic | 40.0% | |
| !! | CAAGAAGCATCCAAAGAAAG+AGG | + | chr1_2:47381456-47381475 | Msa0073600:CDS | 40.0% |
| !!! | AGGGGGGGCTTTTTTTTTAA+TGG | - | chr1_2:47381573-47381592 | None:intergenic | 40.0% |
| ACTCTCCATCTGACTACAAA+GGG | - | chr1_2:47381592-47381611 | None:intergenic | 40.0% | |
| TACTCTCCATCTGACTACAA+AGG | - | chr1_2:47381593-47381612 | None:intergenic | 40.0% | |
| GCAGACCAGACATGAATATT+AGG | - | chr1_2:47382120-47382139 | None:intergenic | 40.0% | |
| ! | TGGTGTCAAATGTTCATCCT+CGG | - | chr1_2:47382233-47382252 | None:intergenic | 40.0% |
| GGCATATCTCAATATGGAGT+TGG | + | chr1_2:47382328-47382347 | Msa0073600:CDS | 40.0% | |
| ACAGAAATTCAGCAAGAACG+AGG | + | chr1_2:47382528-47382547 | Msa0073600:CDS | 40.0% | |
| CGAATCATAGGAACTTCAGT+TGG | + | chr1_2:47382603-47382622 | Msa0073600:intron | 40.0% | |
| ACACTAAAAGGTAAGATCCG+CGG | - | chr1_2:47382773-47382792 | None:intergenic | 40.0% | |
| !! | CTCTTTTTGTTTCGTCGCTT+TGG | - | chr1_2:47382836-47382855 | None:intergenic | 40.0% |
| ! | AGATGGACCATAGTTTTCAC+TGG | - | chr1_2:47382864-47382883 | None:intergenic | 40.0% |
| TATGGTCCATCTAGTAGTCT+TGG | + | chr1_2:47382872-47382891 | Msa0073600:CDS | 40.0% | |
| ! | CTTTTGCCAAGACTACTAGA+TGG | - | chr1_2:47382881-47382900 | None:intergenic | 40.0% |
| ! | TCACTGGACTGTTTTACACA+TGG | - | chr1_2:47382942-47382961 | None:intergenic | 40.0% |
| TAAGGATTGCAAACTTCTGC+AGG | - | chr1_2:47383102-47383121 | None:intergenic | 40.0% | |
| ATCACAATACTGAAGGGGTT+AGG | - | chr1_2:47383128-47383147 | None:intergenic | 40.0% | |
| TGAAGCTCGTAGCATTGTTT+CGG | - | chr1_2:47383254-47383273 | None:intergenic | 40.0% | |
| CTATGGGGCTTAAGGTGAAT+TGG | + | chr1_2:47378298-47378317 | Msa0073600:intron | 45.0% | |
| TCATCATCATGCATGAGCAG+TGG | + | chr1_2:47378389-47378408 | Msa0073600:intron | 45.0% | |
| !! | TTCTTGGATTAGTAGGGACC+AGG | + | chr1_2:47378476-47378495 | Msa0073600:intron | 45.0% |
| !! | TCTTGGATTAGTAGGGACCA+GGG | + | chr1_2:47378477-47378496 | Msa0073600:intron | 45.0% |
| TGGGATTAAACGTCATTCCC+TGG | - | chr1_2:47378497-47378516 | None:intergenic | 45.0% | |
| ! | GGTTTTACCTTAGGCATGCT+TGG | + | chr1_2:47378525-47378544 | Msa0073600:intron | 45.0% |
| CAAACTGTAGGACGGAAACT+TGG | - | chr1_2:47378736-47378755 | None:intergenic | 45.0% | |
| CAAGTTTCCGTCCTACAGTT+TGG | + | chr1_2:47378734-47378753 | Msa0073600:intron | 45.0% | |
| TACACGGGTATCCAAACTGT+AGG | - | chr1_2:47378748-47378767 | None:intergenic | 45.0% | |
| CAAGAGAATATGCGATGGAC+CGG | + | chr1_2:47378936-47378955 | Msa0073600:exon | 45.0% | |
| AAGAGAATATGCGATGGACC+GGG | + | chr1_2:47378937-47378956 | Msa0073600:exon | 45.0% | |
| GAACAGTCATCGAAACACAG+GGG | - | chr1_2:47379243-47379262 | None:intergenic | 45.0% | |
| GGAACAGTCATCGAAACACA+GGG | - | chr1_2:47379244-47379263 | None:intergenic | 45.0% | |
| TGGAACAGTCATCGAAACAC+AGG | - | chr1_2:47379245-47379264 | None:intergenic | 45.0% | |
| ! | AGGCTTGGTAGTAGTTGTTG+TGG | - | chr1_2:47379544-47379563 | None:intergenic | 45.0% |
| ! | ACTACCAAGCCTTTTCCACT+AGG | + | chr1_2:47379552-47379571 | Msa0073600:intron | 45.0% |
| TCAATCCCACCTAGTGGAAA+AGG | - | chr1_2:47379564-47379583 | None:intergenic | 45.0% | |
| ATATGAAGCTTGCGAGGATC+TGG | - | chr1_2:47379646-47379665 | None:intergenic | 45.0% | |
| TGCAAGTGCCCATATGGTAT+CGG | + | chr1_2:47379751-47379770 | Msa0073600:intron | 45.0% | |
| ! | GAGAGCCTGAGTATTGTTGA+TGG | + | chr1_2:47380135-47380154 | Msa0073600:intron | 45.0% |
| CTAGTGTGCTTACGTTCATC+AGG | + | chr1_2:47380369-47380388 | Msa0073600:intron | 45.0% | |
| GTCTAAACTCGGTTACTGTG+GGG | + | chr1_2:47380450-47380469 | Msa0073600:intron | 45.0% | |
| TCTAAACTCGGTTACTGTGG+GGG | + | chr1_2:47380451-47380470 | Msa0073600:intron | 45.0% | |
| !! | TAGGTCCTTGATGGATTCCT+TGG | + | chr1_2:47380657-47380676 | Msa0073600:intron | 45.0% |
| CATCTCCAAGGAATCCATCA+AGG | - | chr1_2:47380665-47380684 | None:intergenic | 45.0% | |
| !! | CTTGATGGATTCCTTGGAGA+TGG | + | chr1_2:47380663-47380682 | Msa0073600:CDS | 45.0% |
| ! | ATTCCTTGGAGATGGATTCC+TGG | + | chr1_2:47380671-47380690 | Msa0073600:CDS | 45.0% |
| ! | GTTTTCTCCAATGCATGTGG+AGG | + | chr1_2:47380729-47380748 | Msa0073600:CDS | 45.0% |
| GAAATACCCTCCACATGCAT+TGG | - | chr1_2:47380739-47380758 | None:intergenic | 45.0% | |
| !! | TGCATGTGGAGGGTATTTCT+TGG | + | chr1_2:47380740-47380759 | Msa0073600:CDS | 45.0% |
| !! | GCATGTGGAGGGTATTTCTT+GGG | + | chr1_2:47380741-47380760 | Msa0073600:CDS | 45.0% |
| TGCTTATGAAGACTCGCCTT+TGG | + | chr1_2:47380898-47380917 | Msa0073600:CDS | 45.0% | |
| !! | GTGCTACTTCCACTAAATCC+TGG | - | chr1_2:47380950-47380969 | None:intergenic | 45.0% |
| ACAGTCACCCATGATACACA+TGG | + | chr1_2:47381046-47381065 | Msa0073600:CDS | 45.0% | |
| CTGGTGTAAAACGTAAACGG+CGG | + | chr1_2:47381320-47381339 | Msa0073600:CDS | 45.0% | |
| TCTCCATCTGACTACAAAGG+GGG | - | chr1_2:47381590-47381609 | None:intergenic | 45.0% | |
| CTCTCCATCTGACTACAAAG+GGG | - | chr1_2:47381591-47381610 | None:intergenic | 45.0% | |
| ! | TGACTACGAGCCTTTTTCCT+CGG | + | chr1_2:47382201-47382220 | Msa0073600:CDS | 45.0% |
| ! | CTCAATATGGAGTTGGTCGA+TGG | + | chr1_2:47382335-47382354 | Msa0073600:CDS | 45.0% |
| TACAGTACCCTGACATCTGT+GGG | - | chr1_2:47382406-47382425 | None:intergenic | 45.0% | |
| GTGCAGTACAGGCTCTTAAA+AGG | - | chr1_2:47382510-47382529 | None:intergenic | 45.0% | |
| GCTGAATTTCTGTGCAGTAC+AGG | - | chr1_2:47382521-47382540 | None:intergenic | 45.0% | |
| ACTAAAAGGTAAGATCCGCG+GGG | - | chr1_2:47382771-47382790 | None:intergenic | 45.0% | |
| CACTAAAAGGTAAGATCCGC+GGG | - | chr1_2:47382772-47382791 | None:intergenic | 45.0% | |
| ! | GCGGATCTTACCTTTTAGTG+TGG | + | chr1_2:47382772-47382791 | Msa0073600:CDS | 45.0% |
| GTTTAGCCAATTCCAGCACT+CGG | - | chr1_2:47382802-47382821 | None:intergenic | 45.0% | |
| ! | TGTTTCGTCGCTTTGGGTAT+GGG | - | chr1_2:47382829-47382848 | None:intergenic | 45.0% |
| ! | TTGTTTCGTCGCTTTGGGTA+TGG | - | chr1_2:47382830-47382849 | None:intergenic | 45.0% |
| ACTGAAGGGGTTAGGCATTA+AGG | - | chr1_2:47383120-47383139 | None:intergenic | 45.0% | |
| ATGTTGAAGATGTCCTGCGC+TGG | + | chr1_2:47378209-47378228 | Msa0073600:five_prime_UTR | 50.0% | |
| TGGGAGTGATTGAGTACAGC+TGG | + | chr1_2:47378242-47378261 | Msa0073600:five_prime_UTR | 50.0% | |
| GCGGGTCCTCAGTATAGAAA+AGG | + | chr1_2:47378450-47378469 | Msa0073600:intron | 50.0% | |
| CGGGTATCCAAACTGTAGGA+CGG | - | chr1_2:47378744-47378763 | None:intergenic | 50.0% | |
| ! | ACCAAGCCTTTTCCACTAGG+TGG | + | chr1_2:47379555-47379574 | Msa0073600:intron | 50.0% |
| ! | CCAAGCCTTTTCCACTAGGT+GGG | + | chr1_2:47379556-47379575 | Msa0073600:intron | 50.0% |
| CATCCAGGAATCCATCTCCA+AGG | - | chr1_2:47380677-47380696 | None:intergenic | 50.0% | |
| AGTGGAAGTAGCACTGTTGG+TGG | + | chr1_2:47380956-47380975 | Msa0073600:CDS | 50.0% | |
| GTGGAAGTAGCACTGTTGGT+GGG | + | chr1_2:47380957-47380976 | Msa0073600:CDS | 50.0% | |
| CGGAATCTCTTCTCTCTAGG+TGG | - | chr1_2:47381235-47381254 | None:intergenic | 50.0% | |
| GATTCCGAAAGCCTACTCAG+AGG | + | chr1_2:47381248-47381267 | Msa0073600:CDS | 50.0% | |
| TCCATCTGACTACAAAGGGG+GGG | - | chr1_2:47381588-47381607 | None:intergenic | 50.0% | |
| CTCCATCTGACTACAAAGGG+GGG | - | chr1_2:47381589-47381608 | None:intergenic | 50.0% | |
| CTGTTCAGGCAAAGAGAGGA+GGG | - | chr1_2:47381831-47381850 | None:intergenic | 50.0% | |
| CTCCTCTCTTTGCCTGAACA+GGG | + | chr1_2:47381830-47381849 | Msa0073600:intron | 50.0% | |
| TCCTCTCTTTGCCTGAACAG+GGG | + | chr1_2:47381831-47381850 | Msa0073600:intron | 50.0% | |
| TCGGACTCTTCCGAGGAAAA+AGG | - | chr1_2:47382214-47382233 | None:intergenic | 50.0% | |
| ! | TTTTTCCTCGGAAGAGTCCG+AGG | + | chr1_2:47382213-47382232 | Msa0073600:CDS | 50.0% |
| GTACAGTACCCTGACATCTG+TGG | - | chr1_2:47382407-47382426 | None:intergenic | 50.0% | |
| AAAATGATGAGACTGCCCCG+CGG | + | chr1_2:47382753-47382772 | Msa0073600:CDS | 50.0% | |
| ! | ACTCGGCTAGCCACACTAAA+AGG | - | chr1_2:47382785-47382804 | None:intergenic | 50.0% |
| ! | ATGTCCTGCGCTGGCAATAG+AGG | + | chr1_2:47378218-47378237 | Msa0073600:five_prime_UTR | 55.0% |
| CCCACCTAGTGGAAAAGGCT+TGG | - | chr1_2:47379559-47379578 | None:intergenic | 55.0% | |
| CCAAGCGACGAGTCTAGTAG+CGG | + | chr1_2:47381397-47381416 | Msa0073600:CDS | 55.0% | |
| CCTGTTCAGGCAAAGAGAGG+AGG | - | chr1_2:47381832-47381851 | None:intergenic | 55.0% | |
| CCTCCTCTCTTTGCCTGAAC+AGG | + | chr1_2:47381829-47381848 | Msa0073600:intron | 55.0% | |
| TCTTTGCCTGAACAGGGGCT+TGG | + | chr1_2:47381836-47381855 | Msa0073600:intron | 55.0% | |
| ATGAAGCCAAGCCCCTGTTC+AGG | - | chr1_2:47381845-47381864 | None:intergenic | 55.0% | |
| TTCATCCTCGGACTCTTCCG+AGG | - | chr1_2:47382221-47382240 | None:intergenic | 55.0% | |
| ACCGAACTCCCACAGATGTC+AGG | + | chr1_2:47382395-47382414 | Msa0073600:CDS | 55.0% | |
| CCCTGACATCTGTGGGAGTT+CGG | - | chr1_2:47382399-47382418 | None:intergenic | 55.0% | |
| CCGAACTCCCACAGATGTCA+GGG | + | chr1_2:47382396-47382415 | Msa0073600:CDS | 55.0% | |
| ! | CTGCGCTGGCAATAGAGGCT+GGG | + | chr1_2:47378223-47378242 | Msa0073600:five_prime_UTR | 60.0% |
| CCGCTACTAGACTCGTCGCT+TGG | - | chr1_2:47381400-47381419 | None:intergenic | 60.0% | |
| GCCCCCCCTTTGTAGTCAGA+TGG | + | chr1_2:47381584-47381603 | Msa0073600:intron | 60.0% | |
| GCCCCTGTTCAGGCAAAGAG+AGG | - | chr1_2:47381835-47381854 | None:intergenic | 60.0% | |
| ! | TAGTGTGGCTAGCCGAGTGC+TGG | + | chr1_2:47382787-47382806 | Msa0073600:CDS | 60.0% |
| !! | GGCTAGCCGAGTGCTGGAAT+TGG | + | chr1_2:47382793-47382812 | Msa0073600:CDS | 60.0% |
| CCAGCCTCTATTGCCAGCGC+AGG | - | chr1_2:47378225-47378244 | None:intergenic | 65.0% | |
| ! | CCTGCGCTGGCAATAGAGGC+TGG | + | chr1_2:47378222-47378241 | Msa0073600:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 47378012 | 47383304 | 47378012 | ID=Msa0073600;Name=Msa0073600 |
| chr1_2 | mRNA | 47378012 | 47383304 | 47378012 | ID=Msa0073600-mRNA-1;Parent=Msa0073600;Name=Msa0073600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=323|1|1|1|0.66|0.6|10|345|463 |
| chr1_2 | exon | 47378012 | 47378311 | 47378012 | ID=Msa0073600-mRNA-1:exon:14405;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47378927 | 47379000 | 47378927 | ID=Msa0073600-mRNA-1:exon:14406;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47379816 | 47379915 | 47379816 | ID=Msa0073600-mRNA-1:exon:14407;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47380391 | 47380443 | 47380391 | ID=Msa0073600-mRNA-1:exon:14408;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47380660 | 47380762 | 47380660 | ID=Msa0073600-mRNA-1:exon:14409;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47380861 | 47381477 | 47380861 | ID=Msa0073600-mRNA-1:exon:14410;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47382190 | 47382417 | 47382190 | ID=Msa0073600-mRNA-1:exon:14411;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47382493 | 47382549 | 47382493 | ID=Msa0073600-mRNA-1:exon:14412;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47382746 | 47383246 | 47382746 | ID=Msa0073600-mRNA-1:exon:14413;Parent=Msa0073600-mRNA-1 |
| chr1_2 | exon | 47383278 | 47383304 | 47383278 | ID=Msa0073600-mRNA-1:exon:14414;Parent=Msa0073600-mRNA-1 |
| chr1_2 | five_prime_UTR | 47378012 | 47378311 | 47378012 | ID=Msa0073600-mRNA-1:five_prime_utr;Parent=Msa0073600-mRNA-1 |
| chr1_2 | five_prime_UTR | 47378927 | 47378949 | 47378927 | ID=Msa0073600-mRNA-1:five_prime_utr;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47378950 | 47379000 | 47378950 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47379816 | 47379915 | 47379816 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47380391 | 47380443 | 47380391 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47380660 | 47380762 | 47380660 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47380861 | 47381477 | 47380861 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47382190 | 47382417 | 47382190 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47382493 | 47382549 | 47382493 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | CDS | 47382746 | 47382928 | 47382746 | ID=Msa0073600-mRNA-1:cds;Parent=Msa0073600-mRNA-1 |
| chr1_2 | three_prime_UTR | 47382929 | 47383246 | 47382929 | ID=Msa0073600-mRNA-1:three_prime_utr;Parent=Msa0073600-mRNA-1 |
| chr1_2 | three_prime_UTR | 47383278 | 47383304 | 47383278 | ID=Msa0073600-mRNA-1:three_prime_utr;Parent=Msa0073600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
