Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076030 | XP_003606813.1 | 95.600 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 1.24e-125 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076030 | sp|Q8VYD3|U1159_ARATH | 52.800 | 250 | 105 | 3 | 1 | 250 | 1 | 237 | 1.16e-78 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076030 | G7JEV2 | 95.600 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 5.93e-126 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076030 | Msa0181620 | 0.873017 | 2.035866e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076030 | MtrunA17_Chr4g0033781 | 95.600 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 1.14e-129 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076030 | AT2G46200.3 | 52.800 | 250 | 105 | 3 | 1 | 250 | 1 | 237 | 1.87e-80 | 246 |
| Msa0076030 | AT2G46200.4 | 52.800 | 250 | 105 | 3 | 1 | 250 | 1 | 237 | 4.08e-80 | 245 |
| Msa0076030 | AT2G46200.1 | 52.800 | 250 | 105 | 3 | 1 | 250 | 1 | 237 | 1.18e-79 | 245 |
| Msa0076030 | AT2G46200.2 | 52.800 | 250 | 105 | 3 | 1 | 250 | 1 | 237 | 1.18e-79 | 245 |
Find 84 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGATAAGTTCACGATTT+TGG | 0.153650 | 1_2:+51875753 | None:intergenic |
| CTTCAACAGCCATTGCTTCT+TGG | 0.185190 | 1_2:+51871980 | None:intergenic |
| CACGAAAGTCAAGTTCCTTT+TGG | 0.217981 | 1_2:-51872395 | Msa0076030:CDS |
| CGATTCTGAATGCAGGTTTA+TGG | 0.234655 | 1_2:-51870001 | Msa0076030:intron |
| TTCAACAGCCATTGCTTCTT+GGG | 0.270473 | 1_2:+51871981 | None:intergenic |
| GAACCGATCACAGACATTTC+TGG | 0.278238 | 1_2:+51872368 | None:intergenic |
| GAAATGTCTGTGATCGGTTC+AGG | 0.283630 | 1_2:-51872365 | Msa0076030:CDS |
| ACGGGTCGGAAATGGAGTTT+TGG | 0.323019 | 1_2:+51875717 | None:intergenic |
| GAACTTGACTTTCGTGGTTC+GGG | 0.347512 | 1_2:+51872402 | None:intergenic |
| CGTGGTTCGGGTGGTAATAT+TGG | 0.359315 | 1_2:+51872414 | None:intergenic |
| GGAACTTGACTTTCGTGGTT+CGG | 0.368648 | 1_2:+51872401 | None:intergenic |
| CACTGTGTACAGTGTAAATC+AGG | 0.398319 | 1_2:+51872512 | None:intergenic |
| AGTACTCAACGGGTCGGAAA+TGG | 0.407742 | 1_2:+51875709 | None:intergenic |
| CAAAAGGAACTTGACTTTCG+TGG | 0.409967 | 1_2:+51872396 | None:intergenic |
| ACAGCTCGAGTTGCTCTTGA+TGG | 0.410405 | 1_2:-51870246 | Msa0076030:intron |
| GTTAAAACTAAAAGCTCAGC+TGG | 0.412096 | 1_2:-51871941 | Msa0076030:CDS |
| TTTCTCCTCCGATTGAAACT+TGG | 0.418190 | 1_2:-51875541 | Msa0076030:five_prime_UTR |
| CTTGATACTTGCAATTTCCT+TGG | 0.418968 | 1_2:+51871616 | None:intergenic |
| AGGCTGATGAATGGAGGGCT+AGG | 0.421411 | 1_2:-51871646 | Msa0076030:CDS |
| AAAGGTTGTGGTGGCGGCGG+AGG | 0.439148 | 1_2:+51872456 | None:intergenic |
| TTCTCCTCCGATTGAAACTT+GGG | 0.439681 | 1_2:-51875540 | Msa0076030:five_prime_UTR |
| GATACTCTAAATCTTGTAAA+GGG | 0.441774 | 1_2:-51872333 | Msa0076030:CDS |
| AGATGATCAAAGAGAGTAAA+GGG | 0.442016 | 1_2:-51872089 | Msa0076030:CDS |
| GAAGAAGAAATTAGAGTCTG+AGG | 0.447206 | 1_2:-51870955 | Msa0076030:intron |
| ATGTACTTTCTGTAGGCAAA+AGG | 0.453487 | 1_2:-51872127 | Msa0076030:intron |
| ACTGCTGATTTCTCTTCCCA+TGG | 0.453492 | 1_2:+51871886 | None:intergenic |
| CCCTCCATTCATCAGCCTCT+CGG | 0.473533 | 1_2:+51871651 | None:intergenic |
| ATAAAGTGCACAAGTCTAAA+CGG | 0.474518 | 1_2:-51871849 | Msa0076030:CDS |
| TTAAAGAATTACGCTCCATA+AGG | 0.476317 | 1_2:-51870214 | Msa0076030:CDS |
| GTGCACTTTATTCGTAAACT+TGG | 0.479857 | 1_2:+51871861 | None:intergenic |
| TCGGAAAGAGAGGATGAAGA+TGG | 0.485304 | 1_2:+51875801 | None:intergenic |
| GGTGCAGACTGAAAAGGAAC+TGG | 0.489260 | 1_2:+51872477 | None:intergenic |
| TAATGTTTCAGTACCGTCGC+TGG | 0.490294 | 1_2:-51875592 | Msa0076030:intron |
| TCAAGAAAAGGTTGTGGTGG+CGG | 0.494437 | 1_2:+51872450 | None:intergenic |
| GACATTTCTGGTCTCCCAAA+AGG | 0.495679 | 1_2:+51872380 | None:intergenic |
| CAAGGAAATTGCAAGTATCA+AGG | 0.496356 | 1_2:-51871615 | Msa0076030:intron |
| GGTAATATTGGAAGCTGCAT+AGG | 0.497498 | 1_2:+51872426 | None:intergenic |
| AGATACTCTAAATCTTGTAA+AGG | 0.506356 | 1_2:-51872334 | Msa0076030:CDS |
| ATGCAGAGATGAGATCTGTA+AGG | 0.512550 | 1_2:-51875509 | Msa0076030:five_prime_UTR |
| AGCTGCATAGGTTCAAGAAA+AGG | 0.516752 | 1_2:+51872438 | None:intergenic |
| TTGACCGAGAGGCTGATGAA+TGG | 0.517727 | 1_2:-51871655 | Msa0076030:CDS |
| GAAGCGTATTGCAGAAATGC+TGG | 0.525339 | 1_2:-51871800 | Msa0076030:CDS |
| TTGCGGATGAAGCAAGTCCA+TGG | 0.526086 | 1_2:-51871903 | Msa0076030:CDS |
| TTTCAAATAGAGTACTCAAC+GGG | 0.530207 | 1_2:+51875699 | None:intergenic |
| TGGAGGTCCCAAGTTTCAAT+CGG | 0.535310 | 1_2:+51875533 | None:intergenic |
| AAATGTCTGTGATCGGTTCA+GGG | 0.536858 | 1_2:-51872364 | Msa0076030:CDS |
| AGAAAAGGTTGTGGTGGCGG+CGG | 0.541524 | 1_2:+51872453 | None:intergenic |
| GGCGGAGGTGCAGACTGAAA+AGG | 0.546546 | 1_2:+51872471 | None:intergenic |
| TGAAGTGTCTAGAGGACAGA+GGG | 0.549595 | 1_2:-51872017 | Msa0076030:CDS |
| CTTGACTTTCGTGGTTCGGG+TGG | 0.555099 | 1_2:+51872405 | None:intergenic |
| AAGATGATCAAAGAGAGTAA+AGG | 0.555428 | 1_2:-51872090 | Msa0076030:CDS |
| CCATGAGTTACATCTTCTAA+AGG | 0.555479 | 1_2:+51872066 | None:intergenic |
| GGCTGATGAATGGAGGGCTA+GGG | 0.568574 | 1_2:-51871645 | Msa0076030:CDS |
| TCATCCGCAACATATCTGAA+TGG | 0.572382 | 1_2:+51871916 | None:intergenic |
| ACCGAGAGGCTGATGAATGG+AGG | 0.572524 | 1_2:-51871652 | Msa0076030:CDS |
| AGTCTAAACGGAATAAACTC+TGG | 0.573320 | 1_2:-51871837 | Msa0076030:CDS |
| TATAGAAACCCAAGAAGCAA+TGG | 0.578754 | 1_2:-51871989 | Msa0076030:CDS |
| ACTCACCGGTGACAGTGTCT+AGG | 0.582514 | 1_2:+51875676 | None:intergenic |
| GAAGTATAGATCGGAAAGAG+AGG | 0.584538 | 1_2:+51875791 | None:intergenic |
| GCTCGAGTTGCTCTTGATGG+AGG | 0.597688 | 1_2:-51870243 | Msa0076030:CDS |
| CCGAGAGGCTGATGAATGGA+GGG | 0.598428 | 1_2:-51871651 | Msa0076030:CDS |
| AGACCAGAAATGTCTGTGAT+CGG | 0.603717 | 1_2:-51872371 | Msa0076030:CDS |
| CCTTTAGAAGATGTAACTCA+TGG | 0.608456 | 1_2:-51872066 | Msa0076030:CDS |
| ATGAAGTGTCTAGAGGACAG+AGG | 0.609005 | 1_2:-51872018 | Msa0076030:CDS |
| AATGGCATAGAAGTATAGAT+CGG | 0.611996 | 1_2:+51875782 | None:intergenic |
| AAATAGAGTACTCAACGGGT+CGG | 0.616840 | 1_2:+51875703 | None:intergenic |
| TGCGGATGAAGCAAGTCCAT+GGG | 0.617590 | 1_2:-51871902 | Msa0076030:CDS |
| TATTGCAGAAATGCTGGCAA+AGG | 0.618883 | 1_2:-51871794 | Msa0076030:intron |
| GTACCGTCGCTGGAGCTCGA+AGG | 0.619733 | 1_2:-51875582 | Msa0076030:five_prime_UTR |
| GATCTCATCTCTGCATGTGG+AGG | 0.625829 | 1_2:+51875516 | None:intergenic |
| GGAGCCATTCAGATATGTTG+CGG | 0.629602 | 1_2:-51871920 | Msa0076030:CDS |
| TGCAGAGATGAGATCTGTAA+GGG | 0.629904 | 1_2:-51875508 | Msa0076030:five_prime_UTR |
| ACAGATCTCATCTCTGCATG+TGG | 0.634016 | 1_2:+51875513 | None:intergenic |
| TGAAACCTAGACACTGTCAC+CGG | 0.638218 | 1_2:-51875681 | Msa0076030:intron |
| CTAAACGGAATAAACTCTGG+AGG | 0.641658 | 1_2:-51871834 | Msa0076030:CDS |
| GGTTCAAGAAAAGGTTGTGG+TGG | 0.646271 | 1_2:+51872447 | None:intergenic |
| ATGCCTTCGAGCTCCAGCGA+CGG | 0.646433 | 1_2:+51875579 | None:intergenic |
| GTTTCAAATAGAGTACTCAA+CGG | 0.653975 | 1_2:+51875698 | None:intergenic |
| GAGGGCTAGGGAGATTGCCA+AGG | 0.655856 | 1_2:-51871633 | Msa0076030:CDS |
| AGGTCCCAAGTTTCAATCGG+AGG | 0.662155 | 1_2:+51875536 | None:intergenic |
| ATAGGTTCAAGAAAAGGTTG+TGG | 0.678067 | 1_2:+51872444 | None:intergenic |
| ATTTGATCAAATTGACCGAG+AGG | 0.685541 | 1_2:-51871666 | Msa0076030:CDS |
| ATGGGAAGAGAAATCAGCAG+TGG | 0.688987 | 1_2:-51871884 | Msa0076030:CDS |
| GAAGTGTCTAGAGGACAGAG+GGG | 0.760985 | 1_2:-51872016 | Msa0076030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTTCTATTAATTAATA+CGG | - | chr1_2:51870645-51870664 | Msa0076030:intron | 10.0% |
| !! | TTTGCAATTAAAAAGAAAAT+TGG | + | chr1_2:51870552-51870571 | None:intergenic | 15.0% |
| !!! | TGAAATGAATTATTAGATTT+TGG | - | chr1_2:51870797-51870816 | Msa0076030:intron | 15.0% |
| !! | AAATTTCATTACATATAGAT+GGG | - | chr1_2:51872197-51872216 | Msa0076030:intron | 15.0% |
| !!! | ATTTTTATTCCCTTAATTAT+TGG | + | chr1_2:51872498-51872517 | None:intergenic | 15.0% |
| !! | TTTAATAAGATTAAAAACTC+TGG | + | chr1_2:51873067-51873086 | None:intergenic | 15.0% |
| !!! | AGAGTTTTTAATCTTATTAA+AGG | - | chr1_2:51873066-51873085 | Msa0076030:intron | 15.0% |
| !!! | TTAATTGTTGTTTTCTATTT+TGG | + | chr1_2:51873106-51873125 | None:intergenic | 15.0% |
| !!! | TTTATTCTTTTATTGTTTAG+TGG | - | chr1_2:51873244-51873263 | Msa0076030:intron | 15.0% |
| !! | AAAATTATTAATATTTGCAG+TGG | - | chr1_2:51875238-51875257 | Msa0076030:intron | 15.0% |
| !! | AGCAAAATAATATATATACA+AGG | + | chr1_2:51875341-51875360 | None:intergenic | 15.0% |
| !! | TTTAAAAACAAGACAAAGAA+AGG | + | chr1_2:51870525-51870544 | None:intergenic | 20.0% |
| !!! | TATTAATTAATACGGTTTTG+AGG | - | chr1_2:51870653-51870672 | Msa0076030:intron | 20.0% |
| !!! | ATTAATTAATACGGTTTTGA+GGG | - | chr1_2:51870654-51870673 | Msa0076030:intron | 20.0% |
| !!! | TCTTTTCAATATGTTTCTAA+TGG | - | chr1_2:51870766-51870785 | Msa0076030:intron | 20.0% |
| !!! | TGATTTTCTTTTCTTCAAAA+TGG | + | chr1_2:51871237-51871256 | None:intergenic | 20.0% |
| !! | TTGATGAATCAAGAAATAAA+AGG | - | chr1_2:51871388-51871407 | Msa0076030:intron | 20.0% |
| !! | TCAAGAAATAAAAGGAATTT+CGG | - | chr1_2:51871396-51871415 | Msa0076030:intron | 20.0% |
| !! | AAATACATAACTTTCATTAG+TGG | + | chr1_2:51871486-51871505 | None:intergenic | 20.0% |
| !! | ATTTACAATTGATCCTAAAT+AGG | - | chr1_2:51871737-51871756 | Msa0076030:intron | 20.0% |
| !! | ATCTATTATTCTTGAATGTA+CGG | + | chr1_2:51871821-51871840 | None:intergenic | 20.0% |
| !! | CATCTATATGTAATGAAATT+TGG | + | chr1_2:51872198-51872217 | None:intergenic | 20.0% |
| !! | CAAATTTCATTACATATAGA+TGG | - | chr1_2:51872196-51872215 | Msa0076030:intron | 20.0% |
| !! | TTCTCTTAACCTTATATAAA+AGG | - | chr1_2:51872530-51872549 | Msa0076030:five_prime_UTR | 20.0% |
| !! | TCTCTTAACCTTATATAAAA+GGG | - | chr1_2:51872531-51872550 | Msa0076030:five_prime_UTR | 20.0% |
| !! | CTGTAAATCAAATTCAATTA+GGG | + | chr1_2:51872876-51872895 | None:intergenic | 20.0% |
| !! | TCTGTAAATCAAATTCAATT+AGG | + | chr1_2:51872877-51872896 | None:intergenic | 20.0% |
| !! | AAAAACAAAACTACAAGAAT+AGG | + | chr1_2:51873284-51873303 | None:intergenic | 20.0% |
| !!! | AGCTTTTAGTTTTAACATTA+AGG | + | chr1_2:51873878-51873897 | None:intergenic | 20.0% |
| !! | ATATCAGTCAATATAAATGT+AGG | + | chr1_2:51874256-51874275 | None:intergenic | 20.0% |
| !! | TTAGTTAATTATGCTAAACT+TGG | - | chr1_2:51874422-51874441 | Msa0076030:intron | 20.0% |
| !!! | GTTTGAAATAATGAAGAAAA+TGG | + | chr1_2:51874635-51874654 | None:intergenic | 20.0% |
| !!! | TCTTCATTATTTCAAACTTT+TGG | - | chr1_2:51874638-51874657 | Msa0076030:intron | 20.0% |
| !! | AAAATGATTAATATTTGCAG+TGG | + | chr1_2:51875067-51875086 | None:intergenic | 20.0% |
| !!! | CTAATTATGTTTTTTTGTTG+AGG | + | chr1_2:51875208-51875227 | None:intergenic | 20.0% |
| !! | CTCAACAAAAAAACATAATT+AGG | - | chr1_2:51875206-51875225 | Msa0076030:intron | 20.0% |
| !! | TATATATACAAGGCTTAAAT+AGG | + | chr1_2:51875331-51875350 | None:intergenic | 20.0% |
| !!! | GGTAAATCATTTCTATTTTA+TGG | - | chr1_2:51875401-51875420 | Msa0076030:intron | 20.0% |
| !!! | TCAATTTTTATTGTTTTGCT+TGG | - | chr1_2:51875721-51875740 | Msa0076030:five_prime_UTR | 20.0% |
| ! | GGAATGTGAAATAATGTAAT+CGG | + | chr1_2:51870183-51870202 | None:intergenic | 25.0% |
| ! | ATATCATAAGAGATAGAAAG+AGG | + | chr1_2:51870204-51870223 | None:intergenic | 25.0% |
| !!! | GTTTTTTAAGATAGACAAGA+TGG | + | chr1_2:51870387-51870406 | None:intergenic | 25.0% |
| !! | TCAACTCCATTTCATATTTT+AGG | - | chr1_2:51870590-51870609 | Msa0076030:intron | 25.0% |
| ! | TACATGCCTAAAATATGAAA+TGG | + | chr1_2:51870599-51870618 | None:intergenic | 25.0% |
| ! | GAAACATATTGAAAAGATCA+AGG | + | chr1_2:51870763-51870782 | None:intergenic | 25.0% |
| ! | TTCTCTAGATGATAAATTTC+AGG | + | chr1_2:51871514-51871533 | None:intergenic | 25.0% |
| ! | TATCATCTAGAGAAAAAGAA+AGG | - | chr1_2:51871520-51871539 | Msa0076030:intron | 25.0% |
| ! | TGAAACCAATTTCATTAAAC+CGG | - | chr1_2:51871557-51871576 | Msa0076030:intron | 25.0% |
| ! | TCTATTATTCTTGAATGTAC+GGG | + | chr1_2:51871820-51871839 | None:intergenic | 25.0% |
| ! | CTATATGTAATGAAATTTGG+TGG | + | chr1_2:51872195-51872214 | None:intergenic | 25.0% |
| ! | TGTATATGTTATGATCCAAA+TGG | - | chr1_2:51872404-51872423 | Msa0076030:CDS | 25.0% |
| ! | TCACTTGATCCAATAATTAA+GGG | - | chr1_2:51872486-51872505 | Msa0076030:CDS | 25.0% |
| ! | AAATTGAGAGTGAAATAGAA+TGG | + | chr1_2:51872715-51872734 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTCTATTTTGG+AGG | + | chr1_2:51873103-51873122 | None:intergenic | 25.0% |
| !!! | TTCTTGTAGTTTTGTTTTTC+AGG | - | chr1_2:51873285-51873304 | Msa0076030:intron | 25.0% |
| ! | AGATACTCTAAATCTTGTAA+AGG | - | chr1_2:51873489-51873508 | Msa0076030:intron | 25.0% |
| ! | GATACTCTAAATCTTGTAAA+GGG | - | chr1_2:51873490-51873509 | Msa0076030:intron | 25.0% |
| !!! | TTGATAATTGTTTTTGCCAA+AGG | - | chr1_2:51874275-51874294 | Msa0076030:intron | 25.0% |
| ! | ATAATCTTTCAAATAGCCTT+TGG | + | chr1_2:51874294-51874313 | None:intergenic | 25.0% |
| ! | GCATAATTAACTAATCAATC+AGG | + | chr1_2:51874416-51874435 | None:intergenic | 25.0% |
| ! | TGGCAAATGTTAATAATTAG+TGG | + | chr1_2:51874499-51874518 | None:intergenic | 25.0% |
| !!! | AATATGCGCATTTTTTTGAA+TGG | + | chr1_2:51874519-51874538 | None:intergenic | 25.0% |
| ! | ATATTATTCCTGATAAAGAG+TGG | - | chr1_2:51874534-51874553 | Msa0076030:intron | 25.0% |
| ! | AATTTGTAGAGATGATTAGT+TGG | + | chr1_2:51874592-51874611 | None:intergenic | 25.0% |
| !! | TGTATTGCAAACTGATTTAA+CGG | + | chr1_2:51874769-51874788 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTTTTGTTGAGG+TGG | + | chr1_2:51875205-51875224 | None:intergenic | 25.0% |
| !! | GTAAATTTTTGTACAAGTGA+TGG | - | chr1_2:51875380-51875399 | Msa0076030:intron | 25.0% |
| ! | AATGTATAGCTATATCCATA+TGG | + | chr1_2:51875473-51875492 | None:intergenic | 25.0% |
| ! | ATGCAAAAGTTGAAAAAACA+AGG | - | chr1_2:51875632-51875651 | Msa0076030:intron | 25.0% |
| !! | AGAAGTACAAAAGATAAATG+TGG | + | chr1_2:51875770-51875789 | None:intergenic | 25.0% |
| ! | AATGGCATAGAAGTATAGAT+CGG | + | chr1_2:51870044-51870063 | None:intergenic | 30.0% |
| ! | GTAAGATAAGTTCACGATTT+TGG | + | chr1_2:51870073-51870092 | None:intergenic | 30.0% |
| ! | TTTCAAATAGAGTACTCAAC+GGG | + | chr1_2:51870127-51870146 | None:intergenic | 30.0% |
| ! | GTTTCAAATAGAGTACTCAA+CGG | + | chr1_2:51870128-51870147 | None:intergenic | 30.0% |
| TCGGAAAATTAAATACTCAC+CGG | + | chr1_2:51870164-51870183 | None:intergenic | 30.0% | |
| TAAGGGAAAAAGATGGTATA+AGG | - | chr1_2:51870332-51870351 | Msa0076030:intron | 30.0% | |
| ATGCTAAATCAGTGTAATAG+AGG | + | chr1_2:51870698-51870717 | None:intergenic | 30.0% | |
| ATGAACATAGTAGATCGAAT+CGG | - | chr1_2:51871172-51871191 | Msa0076030:intron | 30.0% | |
| CACTGAATTTCTTCAATCAA+GGG | + | chr1_2:51871270-51871289 | None:intergenic | 30.0% | |
| TCACTGAATTTCTTCAATCA+AGG | + | chr1_2:51871271-51871290 | None:intergenic | 30.0% | |
| GATTGAAGAAATTCAGTGAT+TGG | - | chr1_2:51871272-51871291 | Msa0076030:intron | 30.0% | |
| ATGCAGACTAAACATGAATA+GGG | + | chr1_2:51871458-51871477 | None:intergenic | 30.0% | |
| AATGCAGACTAAACATGAAT+AGG | + | chr1_2:51871459-51871478 | None:intergenic | 30.0% | |
| !!! | TTTTGATTTATTGCCTCAAC+CGG | + | chr1_2:51871579-51871598 | None:intergenic | 30.0% |
| ATCTTGTATTTCAACGATTG+TGG | + | chr1_2:51871603-51871622 | None:intergenic | 30.0% | |
| ACAATCGTTGAAATACAAGA+TGG | - | chr1_2:51871602-51871621 | Msa0076030:intron | 30.0% | |
| ! | ATTTGGTCTTTCATCCAATT+TGG | + | chr1_2:51871651-51871670 | None:intergenic | 30.0% |
| AGATTCAAGGAATGTGATTA+CGG | + | chr1_2:51871790-51871809 | None:intergenic | 30.0% | |
| !! | AACGTCAACATTTAGTTTGT+AGG | - | chr1_2:51872002-51872021 | Msa0076030:CDS | 30.0% |
| AGAAACAAGAGATGATTTGA+GGG | + | chr1_2:51872169-51872188 | None:intergenic | 30.0% | |
| TAGAAACAAGAGATGATTTG+AGG | + | chr1_2:51872170-51872189 | None:intergenic | 30.0% | |
| TATGTTATGATCCAAATGGA+AGG | - | chr1_2:51872408-51872427 | Msa0076030:CDS | 30.0% | |
| ACTAAAATTGTGAGAGAGAT+AGG | - | chr1_2:51872456-51872475 | Msa0076030:CDS | 30.0% | |
| GTCACTTGATCCAATAATTA+AGG | - | chr1_2:51872485-51872504 | Msa0076030:CDS | 30.0% | |
| ! | TCATTGGTCCCTTTTATATA+AGG | + | chr1_2:51872542-51872561 | None:intergenic | 30.0% |
| ATATAAAAGGGACCAATGAT+TGG | - | chr1_2:51872543-51872562 | Msa0076030:intron | 30.0% | |
| TGTTGAAGGATATACTGTAA+TGG | + | chr1_2:51872744-51872763 | None:intergenic | 30.0% | |
| !!! | GAGTTTTGGATATTTGTTGA+AGG | + | chr1_2:51872758-51872777 | None:intergenic | 30.0% |
| TCAACAAATATCCAAAACTC+AGG | - | chr1_2:51872758-51872777 | Msa0076030:intron | 30.0% | |
| AAACTTAAACCGAAGAAGAA+TGG | - | chr1_2:51872839-51872858 | Msa0076030:intron | 30.0% | |
| AATGAACTTACCCCTATATA+CGG | - | chr1_2:51872957-51872976 | Msa0076030:intron | 30.0% | |
| TGATAATTGCTCCGTATATA+GGG | + | chr1_2:51872971-51872990 | None:intergenic | 30.0% | |
| ! | TTGATAATTGCTCCGTATAT+AGG | + | chr1_2:51872972-51872991 | None:intergenic | 30.0% |
| CATAATTTATGCATTGTGAG+TGG | + | chr1_2:51873149-51873168 | None:intergenic | 30.0% | |
| ! | TTGCTTAAATGCAGATTTTG+AGG | - | chr1_2:51873171-51873190 | Msa0076030:intron | 30.0% |
| ! | TGATTTGTCGAAACAAAAAG+TGG | + | chr1_2:51873218-51873237 | None:intergenic | 30.0% |
| ! | TTTTCAGCTTAAATCTCTCT+CGG | - | chr1_2:51873587-51873606 | Msa0076030:intron | 30.0% |
| AACACAATGAGTGTTTATAC+TGG | + | chr1_2:51873652-51873671 | None:intergenic | 30.0% | |
| GTATAAACACTCATTGTGTT+TGG | - | chr1_2:51873652-51873671 | Msa0076030:intron | 30.0% | |
| TAGTTTGATGTACTTTCTGT+AGG | - | chr1_2:51873689-51873708 | Msa0076030:intron | 30.0% | |
| AAGATGATCAAAGAGAGTAA+AGG | - | chr1_2:51873733-51873752 | Msa0076030:intron | 30.0% | |
| AGATGATCAAAGAGAGTAAA+GGG | - | chr1_2:51873734-51873753 | Msa0076030:intron | 30.0% | |
| !! | AAGTTTTATGAAGTGTCTAG+AGG | - | chr1_2:51873798-51873817 | Msa0076030:intron | 30.0% |
| ATAAAGTGCACAAGTCTAAA+CGG | - | chr1_2:51873974-51873993 | Msa0076030:intron | 30.0% | |
| ! | GTTGCTTTGTTAAAAACTCT+AGG | - | chr1_2:51874124-51874143 | Msa0076030:intron | 30.0% |
| !!! | GTCTGACTTTTTTCAAGATT+TGG | - | chr1_2:51874378-51874397 | Msa0076030:intron | 30.0% |
| AATTATGCTAAACTTGGAGT+TGG | - | chr1_2:51874428-51874447 | Msa0076030:intron | 30.0% | |
| !!! | TAGTTTTTTCTCCTTTGTCT+GGG | + | chr1_2:51874470-51874489 | None:intergenic | 30.0% |
| !!! | TTAGTTTTTTCTCCTTTGTC+TGG | + | chr1_2:51874471-51874490 | None:intergenic | 30.0% |
| !!! | ATTTCCTTTTGTTTTGCCTT+TGG | - | chr1_2:51874898-51874917 | Msa0076030:intron | 30.0% |
| !!! | TTTCCTTTTGTTTTGCCTTT+GGG | - | chr1_2:51874899-51874918 | Msa0076030:intron | 30.0% |
| ATCAGTAATCAAACGTGATT+AGG | + | chr1_2:51875099-51875118 | None:intergenic | 30.0% | |
| TTGAGGGACTAAAATTCAAA+TGG | - | chr1_2:51875282-51875301 | Msa0076030:intron | 30.0% | |
| ATTCTGTTCTATCTACCATA+TGG | - | chr1_2:51875455-51875474 | Msa0076030:intron | 30.0% | |
| TTAAAGAATTACGCTCCATA+AGG | - | chr1_2:51875609-51875628 | Msa0076030:intron | 30.0% | |
| ! | TTTCAACTTTTGCATCCTTA+TGG | + | chr1_2:51875627-51875646 | None:intergenic | 30.0% |
| AAAGATAAATGTGGCAACAA+GGG | + | chr1_2:51875761-51875780 | None:intergenic | 30.0% | |
| AAAAGATAAATGTGGCAACA+AGG | + | chr1_2:51875762-51875781 | None:intergenic | 30.0% | |
| GAATCGGAACTATGAATTTA+AGG | + | chr1_2:51875808-51875827 | None:intergenic | 30.0% | |
| !! | TCACGATTTTGGAAAACGAA+TGG | + | chr1_2:51870062-51870081 | None:intergenic | 35.0% |
| AGATCTGTAAGGGAAAAAGA+TGG | - | chr1_2:51870325-51870344 | Msa0076030:intron | 35.0% | |
| !! | ACTCCTAATAGAGTTGATAC+CGG | + | chr1_2:51870880-51870899 | None:intergenic | 35.0% |
| ! | ATGCATTGATCTATGTGTCT+AGG | - | chr1_2:51870954-51870973 | Msa0076030:intron | 35.0% |
| TAGTAGATCGAATCAGTATC+TGG | + | chr1_2:51871098-51871117 | None:intergenic | 35.0% | |
| TCAATTAGGGACTACTATGT+TGG | - | chr1_2:51871136-51871155 | Msa0076030:intron | 35.0% | |
| CAATTAGGGACTACTATGTT+GGG | - | chr1_2:51871137-51871156 | Msa0076030:intron | 35.0% | |
| GAAAATCAACGACTGATTGA+AGG | - | chr1_2:51871351-51871370 | Msa0076030:intron | 35.0% | |
| ! | CTCAACCGGTTTAATGAAAT+TGG | + | chr1_2:51871565-51871584 | None:intergenic | 35.0% |
| CAATTTCATTAAACCGGTTG+AGG | - | chr1_2:51871563-51871582 | Msa0076030:intron | 35.0% | |
| GATCCAAACAAAGTCCAAAT+TGG | - | chr1_2:51871634-51871653 | Msa0076030:CDS | 35.0% | |
| CATCCAATTTGGACTTTGTT+TGG | + | chr1_2:51871640-51871659 | None:intergenic | 35.0% | |
| GCGCATTACTTAGCAAAATT+TGG | + | chr1_2:51871668-51871687 | None:intergenic | 35.0% | |
| ! | CTTCATGTATCGACCTATTT+AGG | + | chr1_2:51871753-51871772 | None:intergenic | 35.0% |
| AAACTAAATGTTGACGTTGC+GGG | + | chr1_2:51872000-51872019 | None:intergenic | 35.0% | |
| CAAACTAAATGTTGACGTTG+CGG | + | chr1_2:51872001-51872020 | None:intergenic | 35.0% | |
| ACCATCTGATGTTACTGTTT+GGG | - | chr1_2:51872034-51872053 | Msa0076030:CDS | 35.0% | |
| GAAACAAGAGATGATTTGAG+GGG | + | chr1_2:51872168-51872187 | None:intergenic | 35.0% | |
| ATATAGATGGGAACAAAGTC+AGG | - | chr1_2:51872209-51872228 | Msa0076030:intron | 35.0% | |
| TGGTCATGTTACAGAAAACA+TGG | - | chr1_2:51872255-51872274 | Msa0076030:intron | 35.0% | |
| CATAACAGAACCTACATAGT+TGG | - | chr1_2:51872344-51872363 | Msa0076030:CDS | 35.0% | |
| TGTTGTTCTCAATCACACTA+AGG | + | chr1_2:51872375-51872394 | None:intergenic | 35.0% | |
| AAAGTCATGTCATCAAAGTG+AGG | - | chr1_2:51872431-51872450 | Msa0076030:CDS | 35.0% | |
| GATAATTGCTCCGTATATAG+GGG | + | chr1_2:51872970-51872989 | None:intergenic | 35.0% | |
| TTGTTTCCAAGAAGAAGAAG+AGG | - | chr1_2:51873038-51873057 | Msa0076030:intron | 35.0% | |
| ATAGGTTCAAGAAAAGGTTG+TGG | + | chr1_2:51873382-51873401 | None:intergenic | 35.0% | |
| ! | ACGAAAGTCAAGTTCCTTTT+GGG | - | chr1_2:51873429-51873448 | Msa0076030:intron | 35.0% |
| ATGTACTTTCTGTAGGCAAA+AGG | - | chr1_2:51873696-51873715 | Msa0076030:intron | 35.0% | |
| CCATGAGTTACATCTTCTAA+AGG | + | chr1_2:51873760-51873779 | None:intergenic | 35.0% | |
| ! | CCTTTAGAAGATGTAACTCA+TGG | - | chr1_2:51873757-51873776 | Msa0076030:intron | 35.0% |
| TATAGAAACCCAAGAAGCAA+TGG | - | chr1_2:51873834-51873853 | Msa0076030:intron | 35.0% | |
| GTTAAAACTAAAAGCTCAGC+TGG | - | chr1_2:51873882-51873901 | Msa0076030:intron | 35.0% | |
| GTGCACTTTATTCGTAAACT+TGG | + | chr1_2:51873965-51873984 | None:intergenic | 35.0% | |
| AGTCTAAACGGAATAAACTC+TGG | - | chr1_2:51873986-51874005 | Msa0076030:intron | 35.0% | |
| ! | AACTCTGGAGGAAGAAAAAA+AGG | - | chr1_2:51874001-51874020 | Msa0076030:intron | 35.0% |
| AGACAATAGCTACAGTAAAG+AGG | + | chr1_2:51874083-51874102 | None:intergenic | 35.0% | |
| ATTTGATCAAATTGACCGAG+AGG | - | chr1_2:51874157-51874176 | Msa0076030:intron | 35.0% | |
| CTTGATACTTGCAATTTCCT+TGG | + | chr1_2:51874210-51874229 | None:intergenic | 35.0% | |
| CAAGGAAATTGCAAGTATCA+AGG | - | chr1_2:51874208-51874227 | Msa0076030:intron | 35.0% | |
| !! | CGTGCTGATTTATTATGTTC+AGG | - | chr1_2:51874713-51874732 | Msa0076030:intron | 35.0% |
| ! | TCTGAAACATGTCTATATGC+AGG | - | chr1_2:51874802-51874821 | Msa0076030:intron | 35.0% |
| GAAGAAGAAATTAGAGTCTG+AGG | - | chr1_2:51874868-51874887 | Msa0076030:intron | 35.0% | |
| !!! | TTCCTTTTGTTTTGCCTTTG+GGG | - | chr1_2:51874900-51874919 | Msa0076030:intron | 35.0% |
| TCTTTAGTCCCTGCAAATAT+AGG | - | chr1_2:51874997-51875016 | Msa0076030:intron | 35.0% | |
| TCCAATGACCTATATTTGCA+GGG | + | chr1_2:51875008-51875027 | None:intergenic | 35.0% | |
| TTCCAATGACCTATATTTGC+AGG | + | chr1_2:51875009-51875028 | None:intergenic | 35.0% | |
| ! | TGGAAGGATTAGTAAGTTCA+GGG | + | chr1_2:51875039-51875058 | None:intergenic | 35.0% |
| ! | TTGGAAGGATTAGTAAGTTC+AGG | + | chr1_2:51875040-51875059 | None:intergenic | 35.0% |
| TAATATTTGCAGTGGCAGTT+TGG | + | chr1_2:51875246-51875265 | None:intergenic | 35.0% | |
| ATCACGTTTGATTACTGATG+TGG | - | chr1_2:51875100-51875119 | Msa0076030:intron | 35.0% | |
| AACCAACATTAAGTGCAAAG+AGG | - | chr1_2:51875128-51875147 | Msa0076030:intron | 35.0% | |
| TAATATTTGCAGTGGCAGTT+TGG | - | chr1_2:51875246-51875265 | Msa0076030:intron | 35.0% | |
| ! | TTGGAAGGATTAGTAAGTTG+AGG | - | chr1_2:51875265-51875284 | Msa0076030:intron | 35.0% |
| ! | TGGAAGGATTAGTAAGTTGA+GGG | - | chr1_2:51875266-51875285 | Msa0076030:intron | 35.0% |
| TTCAAATGGCCTATATTTGC+AGG | - | chr1_2:51875296-51875315 | Msa0076030:intron | 35.0% | |
| TCAAATGGCCTATATTTGCA+GGG | - | chr1_2:51875297-51875316 | Msa0076030:intron | 35.0% | |
| TCTTTAGTCCCTGCAAATAT+AGG | + | chr1_2:51874997-51875016 | None:intergenic | 35.0% | |
| GCTATTGAAAAAAGAGTCAG+AGG | - | chr1_2:51875358-51875377 | Msa0076030:intron | 35.0% | |
| ATCAAGTTCTTCAGAGTTCA+TGG | + | chr1_2:51875430-51875449 | None:intergenic | 35.0% | |
| CATAAACCTGCATTCAGAAT+CGG | + | chr1_2:51875824-51875843 | None:intergenic | 35.0% | |
| GAAGTATAGATCGGAAAGAG+AGG | + | chr1_2:51870035-51870054 | None:intergenic | 40.0% | |
| ! | AAATAGAGTACTCAACGGGT+CGG | + | chr1_2:51870123-51870142 | None:intergenic | 40.0% |
| TTTCTCCTCCGATTGAAACT+TGG | - | chr1_2:51870282-51870301 | Msa0076030:intron | 40.0% | |
| TTCTCCTCCGATTGAAACTT+GGG | - | chr1_2:51870283-51870302 | Msa0076030:intron | 40.0% | |
| ATGCAGAGATGAGATCTGTA+AGG | - | chr1_2:51870314-51870333 | Msa0076030:intron | 40.0% | |
| TGCAGAGATGAGATCTGTAA+GGG | - | chr1_2:51870315-51870334 | Msa0076030:intron | 40.0% | |
| !! | ATTTTGGCACCTTAGCCTAT+TGG | - | chr1_2:51870813-51870832 | Msa0076030:intron | 40.0% |
| ! | TTTTGGCACCTTAGCCTATT+GGG | - | chr1_2:51870814-51870833 | Msa0076030:intron | 40.0% |
| ACTATCCTAATCACTGGAAC+CGG | - | chr1_2:51870858-51870877 | Msa0076030:intron | 40.0% | |
| GAACCGGTATCAACTCTATT+AGG | - | chr1_2:51870874-51870893 | Msa0076030:intron | 40.0% | |
| GAAGCAATTGTACGAGACAA+AGG | + | chr1_2:51871003-51871022 | None:intergenic | 40.0% | |
| ATCGAATCAGTATCTGGTTG+CGG | + | chr1_2:51871092-51871111 | None:intergenic | 40.0% | |
| TCGATCTACTATGTTCATCC+CGG | - | chr1_2:51871107-51871126 | Msa0076030:intron | 40.0% | |
| ATCCCGGTGATGTTCAATTA+GGG | - | chr1_2:51871123-51871142 | Msa0076030:intron | 40.0% | |
| AGTCCCTAATTGAACATCAC+CGG | + | chr1_2:51871129-51871148 | None:intergenic | 40.0% | |
| TACTATGTTGGGACCATCAT+CGG | - | chr1_2:51871148-51871167 | Msa0076030:intron | 40.0% | |
| TACTATGTTCATCCCGATGA+TGG | + | chr1_2:51871164-51871183 | None:intergenic | 40.0% | |
| TAGTAGATCGAATCGGTATC+TGG | - | chr1_2:51871179-51871198 | Msa0076030:intron | 40.0% | |
| TAGCCACACGAATTAAAGCT+AGG | - | chr1_2:51871696-51871715 | Msa0076030:intron | 40.0% | |
| !! | AGTCCTAGCTTTAATTCGTG+TGG | + | chr1_2:51871702-51871721 | None:intergenic | 40.0% |
| GAAAGGCTTACAGTTTGCAA+AGG | + | chr1_2:51871848-51871867 | None:intergenic | 40.0% | |
| GAAGCAATGGCATTGTTGAA+AGG | + | chr1_2:51871865-51871884 | None:intergenic | 40.0% | |
| ! | CTCATTTTCCATTCTCCGAA+GGG | - | chr1_2:51871974-51871993 | Msa0076030:CDS | 40.0% |
| CACCATCTGATGTTACTGTT+TGG | - | chr1_2:51872033-51872052 | Msa0076030:CDS | 40.0% | |
| ACCCAAACAGTAACATCAGA+TGG | + | chr1_2:51872038-51872057 | None:intergenic | 40.0% | |
| TTTGCAGATGCAAAACCAAC+AGG | + | chr1_2:51872065-51872084 | None:intergenic | 40.0% | |
| ! | GTAGCAGTGTACAGCTTTTA+AGG | - | chr1_2:51872105-51872124 | Msa0076030:CDS | 40.0% |
| ! | GCAATGCTCTTTTTGTGGTA+GGG | - | chr1_2:51872231-51872250 | Msa0076030:intron | 40.0% |
| TATTTCCTCTTCCAAAGCTC+GGG | + | chr1_2:51872287-51872306 | None:intergenic | 40.0% | |
| CTATTTCCTCTTCCAAAGCT+CGG | + | chr1_2:51872288-51872307 | None:intergenic | 40.0% | |
| TAAGGCAATGCCAACTATGT+AGG | + | chr1_2:51872357-51872376 | None:intergenic | 40.0% | |
| GACATGACTTTCCTTCCATT+TGG | + | chr1_2:51872422-51872441 | None:intergenic | 40.0% | |
| ATGCCTTTGCTTCCAATCAT+TGG | + | chr1_2:51872558-51872577 | None:intergenic | 40.0% | |
| !! | CTCTACTAGAGAGTACCAAA+GGG | + | chr1_2:51872617-51872636 | None:intergenic | 40.0% |
| !! | ACTCTACTAGAGAGTACCAA+AGG | + | chr1_2:51872618-51872637 | None:intergenic | 40.0% |
| TCCAAAACTCAGGCTAGAAA+CGG | - | chr1_2:51872768-51872787 | Msa0076030:intron | 40.0% | |
| TGCTCATGACCATTCTTCTT+CGG | + | chr1_2:51872851-51872870 | None:intergenic | 40.0% | |
| TGGATTCCTCTTCTTCTTCT+TGG | + | chr1_2:51873047-51873066 | None:intergenic | 40.0% | |
| CACTGTGTACAGTGTAAATC+AGG | + | chr1_2:51873314-51873333 | None:intergenic | 40.0% | |
| AGCTGCATAGGTTCAAGAAA+AGG | + | chr1_2:51873388-51873407 | None:intergenic | 40.0% | |
| GGTAATATTGGAAGCTGCAT+AGG | + | chr1_2:51873400-51873419 | None:intergenic | 40.0% | |
| CAAAAGGAACTTGACTTTCG+TGG | + | chr1_2:51873430-51873449 | None:intergenic | 40.0% | |
| ! | CACGAAAGTCAAGTTCCTTT+TGG | - | chr1_2:51873428-51873447 | Msa0076030:intron | 40.0% |
| AGACCAGAAATGTCTGTGAT+CGG | - | chr1_2:51873452-51873471 | Msa0076030:intron | 40.0% | |
| ! | AAATGTCTGTGATCGGTTCA+GGG | - | chr1_2:51873459-51873478 | Msa0076030:intron | 40.0% |
| ! | GCTGAAAAGCAACTTTTACG+TGG | + | chr1_2:51873575-51873594 | None:intergenic | 40.0% |
| TTCAACAGCCATTGCTTCTT+GGG | + | chr1_2:51873845-51873864 | None:intergenic | 40.0% | |
| TCATCCGCAACATATCTGAA+TGG | + | chr1_2:51873910-51873929 | None:intergenic | 40.0% | |
| CTAAACGGAATAAACTCTGG+AGG | - | chr1_2:51873989-51874008 | Msa0076030:intron | 40.0% | |
| TATTGCAGAAATGCTGGCAA+AGG | - | chr1_2:51874029-51874048 | Msa0076030:intron | 40.0% | |
| TATGCTAAACTTGGAGTTGG+AGG | - | chr1_2:51874431-51874450 | Msa0076030:intron | 40.0% | |
| AACTAGCTCCACTCTTTATC+AGG | + | chr1_2:51874545-51874564 | None:intergenic | 40.0% | |
| AAAGAGTGGAGCTAGTTGAA+AGG | - | chr1_2:51874548-51874567 | Msa0076030:intron | 40.0% | |
| TACCCCAAAGGCAAAACAAA+AGG | + | chr1_2:51874905-51874924 | None:intergenic | 40.0% | |
| TCCCTGCAAATATAGGTCAT+TGG | - | chr1_2:51875004-51875023 | Msa0076030:intron | 40.0% | |
| GACCTCTTTGCACTTAATGT+TGG | + | chr1_2:51875133-51875152 | None:intergenic | 40.0% | |
| ATAGTTCCGATTCTGAATGC+AGG | - | chr1_2:51875815-51875834 | Msa0076030:five_prime_UTR | 40.0% | |
| CGATTCTGAATGCAGGTTTA+TGG | - | chr1_2:51875822-51875841 | Msa0076030:five_prime_UTR | 40.0% | |
| TCGGAAAGAGAGGATGAAGA+TGG | + | chr1_2:51870025-51870044 | None:intergenic | 45.0% | |
| TGAAACCTAGACACTGTCAC+CGG | - | chr1_2:51870142-51870161 | Msa0076030:intron | 45.0% | |
| TAATGTTTCAGTACCGTCGC+TGG | - | chr1_2:51870231-51870250 | Msa0076030:CDS | 45.0% | |
| TGGAGGTCCCAAGTTTCAAT+CGG | + | chr1_2:51870293-51870312 | None:intergenic | 45.0% | |
| ACAGATCTCATCTCTGCATG+TGG | + | chr1_2:51870313-51870332 | None:intergenic | 45.0% | |
| ACAGAGAACCCAATAGGCTA+AGG | + | chr1_2:51870825-51870844 | None:intergenic | 45.0% | |
| TTAGCCTATTGGGTTCTCTG+TGG | - | chr1_2:51870824-51870843 | Msa0076030:intron | 45.0% | |
| TTGGCCACTATCCTAATCAC+TGG | - | chr1_2:51870852-51870871 | Msa0076030:intron | 45.0% | |
| GGTTCCAGTGATTAGGATAG+TGG | + | chr1_2:51870859-51870878 | None:intergenic | 45.0% | |
| !! | TGATACCGGTTCCAGTGATT+AGG | + | chr1_2:51870866-51870885 | None:intergenic | 45.0% |
| TTCGAATCGGTATCTGGTTG+CGG | + | chr1_2:51871036-51871055 | None:intergenic | 45.0% | |
| CATTGCTTCGAATCGGTATC+TGG | + | chr1_2:51871042-51871061 | None:intergenic | 45.0% | |
| !! | CAGATACCGATTCGAAGCAA+TGG | - | chr1_2:51871040-51871059 | Msa0076030:intron | 45.0% |
| TGCGAACCATTGCTTCGAAT+CGG | + | chr1_2:51871049-51871068 | None:intergenic | 45.0% | |
| CATCCCGGTGATGTTCAATT+AGG | - | chr1_2:51871122-51871141 | Msa0076030:intron | 45.0% | |
| GTCCCTAATTGAACATCACC+GGG | + | chr1_2:51871128-51871147 | None:intergenic | 45.0% | |
| ACTATGTTGGGACCATCATC+GGG | - | chr1_2:51871149-51871168 | Msa0076030:intron | 45.0% | |
| ATCGAATCGGTATCTGGTTG+CGG | - | chr1_2:51871185-51871204 | Msa0076030:intron | 45.0% | |
| AAAGCACGATAGAACCTGCT+CGG | - | chr1_2:51871423-51871442 | Msa0076030:intron | 45.0% | |
| TTGCTAAGTAATGCGCAGCT+TGG | - | chr1_2:51871672-51871691 | Msa0076030:CDS | 45.0% | |
| TGCCATTGCTTCTGCAACAT+CGG | - | chr1_2:51871873-51871892 | Msa0076030:CDS | 45.0% | |
| ACATCGGAGTCAGGTAGAAT+CGG | - | chr1_2:51871889-51871908 | Msa0076030:CDS | 45.0% | |
| !! | AAGAGATGCTGATGGGTTTG+TGG | + | chr1_2:51871938-51871957 | None:intergenic | 45.0% |
| CGGTGATAAGAGATGCTGAT+GGG | + | chr1_2:51871945-51871964 | None:intergenic | 45.0% | |
| GAATGGAAAATGAGGCCTCT+CGG | + | chr1_2:51871968-51871987 | None:intergenic | 45.0% | |
| CCTTCGGAGAATGGAAAATG+AGG | + | chr1_2:51871976-51871995 | None:intergenic | 45.0% | |
| ! | CCTCATTTTCCATTCTCCGA+AGG | - | chr1_2:51871973-51871992 | Msa0076030:CDS | 45.0% |
| ACTGTTTGGGTGATACCTGT+TGG | - | chr1_2:51872047-51872066 | Msa0076030:CDS | 45.0% | |
| TTGTAGCAACTGACAGCACA+AGG | - | chr1_2:51872133-51872152 | Msa0076030:intron | 45.0% | |
| ! | GTCAGGCAATGCTCTTTTTG+TGG | - | chr1_2:51872226-51872245 | Msa0076030:intron | 45.0% |
| ! | GGCAATGCTCTTTTTGTGGT+AGG | - | chr1_2:51872230-51872249 | Msa0076030:intron | 45.0% |
| ATTTCCTCTTCCAAAGCTCG+GGG | + | chr1_2:51872286-51872305 | None:intergenic | 45.0% | |
| GGACCAATGATTGGAAGCAA+AGG | - | chr1_2:51872552-51872571 | Msa0076030:intron | 45.0% | |
| !! | AGAGAGTACCAAAGGGAAAG+AGG | + | chr1_2:51872610-51872629 | None:intergenic | 45.0% |
| CCAAAACTCAGGCTAGAAAC+GGG | - | chr1_2:51872769-51872788 | Msa0076030:intron | 45.0% | |
| TTATCAATTGAGCAGCGACG+AGG | - | chr1_2:51872985-51873004 | Msa0076030:intron | 45.0% | |
| TCAAGAAAAGGTTGTGGTGG+CGG | + | chr1_2:51873376-51873395 | None:intergenic | 45.0% | |
| GGTTCAAGAAAAGGTTGTGG+TGG | + | chr1_2:51873379-51873398 | None:intergenic | 45.0% | |
| GAACTTGACTTTCGTGGTTC+GGG | + | chr1_2:51873424-51873443 | None:intergenic | 45.0% | |
| GGAACTTGACTTTCGTGGTT+CGG | + | chr1_2:51873425-51873444 | None:intergenic | 45.0% | |
| !! | GACATTTCTGGTCTCCCAAA+AGG | + | chr1_2:51873446-51873465 | None:intergenic | 45.0% |
| GAACCGATCACAGACATTTC+TGG | + | chr1_2:51873458-51873477 | None:intergenic | 45.0% | |
| ! | GAAATGTCTGTGATCGGTTC+AGG | - | chr1_2:51873458-51873477 | Msa0076030:intron | 45.0% |
| ! | ATGAAGTGTCTAGAGGACAG+AGG | - | chr1_2:51873805-51873824 | Msa0076030:intron | 45.0% |
| ! | TGAAGTGTCTAGAGGACAGA+GGG | - | chr1_2:51873806-51873825 | Msa0076030:intron | 45.0% |
| CTTCAACAGCCATTGCTTCT+TGG | + | chr1_2:51873846-51873865 | None:intergenic | 45.0% | |
| GGAGCCATTCAGATATGTTG+CGG | - | chr1_2:51873903-51873922 | Msa0076030:intron | 45.0% | |
| !! | ACTGCTGATTTCTCTTCCCA+TGG | + | chr1_2:51873940-51873959 | None:intergenic | 45.0% |
| ATGGGAAGAGAAATCAGCAG+TGG | - | chr1_2:51873939-51873958 | Msa0076030:intron | 45.0% | |
| GAAGCGTATTGCAGAAATGC+TGG | - | chr1_2:51874023-51874042 | Msa0076030:intron | 45.0% | |
| ACTGTCTCCAATCTCCATAG+AGG | - | chr1_2:51874675-51874694 | Msa0076030:intron | 45.0% | |
| CTGTCTCCAATCTCCATAGA+GGG | - | chr1_2:51874676-51874695 | Msa0076030:intron | 45.0% | |
| CCAATCTCCATAGAGGGAAA+CGG | - | chr1_2:51874682-51874701 | Msa0076030:intron | 45.0% | |
| CAATCTCCATAGAGGGAAAC+GGG | - | chr1_2:51874683-51874702 | Msa0076030:intron | 45.0% | |
| AATCTCCATAGAGGGAAACG+GGG | - | chr1_2:51874684-51874703 | Msa0076030:intron | 45.0% | |
| ATTTGCAGTGGCAGTTTGGA+AGG | + | chr1_2:51875250-51875269 | None:intergenic | 45.0% | |
| ATTTGCAGTGGCAGTTTGGA+AGG | - | chr1_2:51875250-51875269 | Msa0076030:intron | 45.0% | |
| !!! | AATGGAGTTTTGGGTGGCGA+AGG | + | chr1_2:51870099-51870118 | None:intergenic | 50.0% |
| !!! | GTCGGAAATGGAGTTTTGGG+TGG | + | chr1_2:51870105-51870124 | None:intergenic | 50.0% |
| ! | CGGGTCGGAAATGGAGTTTT+GGG | + | chr1_2:51870108-51870127 | None:intergenic | 50.0% |
| ! | ACGGGTCGGAAATGGAGTTT+TGG | + | chr1_2:51870109-51870128 | None:intergenic | 50.0% |
| AGTACTCAACGGGTCGGAAA+TGG | + | chr1_2:51870117-51870136 | None:intergenic | 50.0% | |
| AGGTCCCAAGTTTCAATCGG+AGG | + | chr1_2:51870290-51870309 | None:intergenic | 50.0% | |
| GATCTCATCTCTGCATGTGG+AGG | + | chr1_2:51870310-51870329 | None:intergenic | 50.0% | |
| TGCACCACAGAGAACCCAAT+AGG | + | chr1_2:51870831-51870850 | None:intergenic | 50.0% | |
| AGTATCTGGTTGCGGATTCG+AGG | + | chr1_2:51871084-51871103 | None:intergenic | 50.0% | |
| TAGGGTTGAGATATCCGAGC+AGG | + | chr1_2:51871440-51871459 | None:intergenic | 50.0% | |
| TACGGGCAGAGTCAGATTCA+AGG | + | chr1_2:51871803-51871822 | None:intergenic | 50.0% | |
| CTCCGATGTTGCAGAAGCAA+TGG | + | chr1_2:51871878-51871897 | None:intergenic | 50.0% | |
| GCGGTGATAAGAGATGCTGA+TGG | + | chr1_2:51871946-51871965 | None:intergenic | 50.0% | |
| ! | TGCTCTTTTTGTGGTAGGGC+TGG | - | chr1_2:51872235-51872254 | Msa0076030:intron | 50.0% |
| TTTCCTCTTCCAAAGCTCGG+GGG | + | chr1_2:51872285-51872304 | None:intergenic | 50.0% | |
| CTGACTCTCCTCTTTCCCTT+TGG | - | chr1_2:51872599-51872618 | Msa0076030:intron | 50.0% | |
| !!! | CCCGTTTCTAGCCTGAGTTT+TGG | + | chr1_2:51872772-51872791 | None:intergenic | 50.0% |
| !! | GATTTAGCTTGCTGCTCTGC+TGG | + | chr1_2:51872922-51872941 | None:intergenic | 50.0% |
| GGTGCAGACTGAAAAGGAAC+TGG | + | chr1_2:51873349-51873368 | None:intergenic | 50.0% | |
| ! | CGTGGTTCGGGTGGTAATAT+TGG | + | chr1_2:51873412-51873431 | None:intergenic | 50.0% |
| ! | GAAGTGTCTAGAGGACAGAG+GGG | - | chr1_2:51873807-51873826 | Msa0076030:intron | 50.0% |
| TTGCGGATGAAGCAAGTCCA+TGG | - | chr1_2:51873920-51873939 | Msa0076030:intron | 50.0% | |
| TGCGGATGAAGCAAGTCCAT+GGG | - | chr1_2:51873921-51873940 | Msa0076030:intron | 50.0% | |
| TTGACCGAGAGGCTGATGAA+TGG | - | chr1_2:51874168-51874187 | Msa0076030:intron | 50.0% | |
| AAACTTGGAGTTGGAGGTCC+TGG | - | chr1_2:51874437-51874456 | Msa0076030:intron | 50.0% | |
| AACTTGGAGTTGGAGGTCCT+GGG | - | chr1_2:51874438-51874457 | Msa0076030:intron | 50.0% | |
| CCGTTTCCCTCTATGGAGAT+TGG | + | chr1_2:51874685-51874704 | None:intergenic | 50.0% | |
| !!! | TGTTTTGCCTTTGGGGTAGC+AGG | - | chr1_2:51874907-51874926 | Msa0076030:intron | 50.0% |
| !!! | GTTTTGCCTTTGGGGTAGCA+GGG | - | chr1_2:51874908-51874927 | Msa0076030:intron | 50.0% |
| ! | AAAGTACCCTGCTACCCCAA+AGG | + | chr1_2:51874917-51874936 | None:intergenic | 50.0% |
| !! | TTGGGGTAGCAGGGTACTTT+TGG | - | chr1_2:51874917-51874936 | Msa0076030:intron | 50.0% |
| AGGTGGAGTCATTAACGACG+TGG | + | chr1_2:51875188-51875207 | None:intergenic | 50.0% | |
| ! | ACAGCTCGAGTTGCTCTTGA+TGG | - | chr1_2:51875577-51875596 | Msa0076030:five_prime_UTR | 50.0% |
| ACTCACCGGTGACAGTGTCT+AGG | + | chr1_2:51870150-51870169 | None:intergenic | 55.0% | |
| TGGGTTCTCTGTGGTGCACT+TGG | - | chr1_2:51870833-51870852 | Msa0076030:intron | 55.0% | |
| GGTATCTGGTTGCGGATTCG+AGG | + | chr1_2:51871193-51871212 | None:intergenic | 55.0% | |
| GGTATCTGGTTGCGGATTCG+AGG | - | chr1_2:51871193-51871212 | Msa0076030:intron | 55.0% | |
| GCTTCTGCAACATCGGAGTC+AGG | - | chr1_2:51871880-51871899 | Msa0076030:CDS | 55.0% | |
| TTGTGGCAGCAGCTGGTTGT+TGG | + | chr1_2:51871921-51871940 | None:intergenic | 55.0% | |
| CATCTCTTATCACCGCCGAG+AGG | - | chr1_2:51871950-51871969 | Msa0076030:CDS | 55.0% | |
| TGGAAAATGAGGCCTCTCGG+CGG | + | chr1_2:51871965-51871984 | None:intergenic | 55.0% | |
| CATGGATATCCCCCGAGCTT+TGG | - | chr1_2:51872273-51872292 | Msa0076030:intron | 55.0% | |
| !! | TATCCCCCGAGCTTTGGAAG+AGG | - | chr1_2:51872279-51872298 | Msa0076030:intron | 55.0% |
| AATTGAGCAGCGACGAGGAG+TGG | - | chr1_2:51872990-51873009 | Msa0076030:intron | 55.0% | |
| ATTGAGCAGCGACGAGGAGT+GGG | - | chr1_2:51872991-51873010 | Msa0076030:intron | 55.0% | |
| !! | AGAAAAGGTTGTGGTGGCGG+CGG | + | chr1_2:51873373-51873392 | None:intergenic | 55.0% |
| ! | CTTGACTTTCGTGGTTCGGG+TGG | + | chr1_2:51873421-51873440 | None:intergenic | 55.0% |
| ACCGAGAGGCTGATGAATGG+AGG | - | chr1_2:51874171-51874190 | Msa0076030:intron | 55.0% | |
| CCCTCCATTCATCAGCCTCT+CGG | + | chr1_2:51874175-51874194 | None:intergenic | 55.0% | |
| CCGAGAGGCTGATGAATGGA+GGG | - | chr1_2:51874172-51874191 | Msa0076030:intron | 55.0% | |
| AGGCTGATGAATGGAGGGCT+AGG | - | chr1_2:51874177-51874196 | Msa0076030:intron | 55.0% | |
| GGCTGATGAATGGAGGGCTA+GGG | - | chr1_2:51874178-51874197 | Msa0076030:intron | 55.0% | |
| CTTTGTCTGGGTTCGAACCC+AGG | + | chr1_2:51874458-51874477 | None:intergenic | 55.0% | |
| CTGGGTTCGAACCCAGACAA+AGG | - | chr1_2:51874456-51874475 | Msa0076030:intron | 55.0% | |
| TCCATAGAGGGAAACGGGGA+AGG | - | chr1_2:51874688-51874707 | Msa0076030:intron | 55.0% | |
| CCATAGAGGGAAACGGGGAA+GGG | - | chr1_2:51874689-51874708 | Msa0076030:intron | 55.0% | |
| ! | GCTCGAGTTGCTCTTGATGG+AGG | - | chr1_2:51875580-51875599 | Msa0076030:five_prime_UTR | 55.0% |
| ATGCCTTCGAGCTCCAGCGA+CGG | + | chr1_2:51870247-51870266 | None:intergenic | 60.0% | |
| ! | GATGGGTTTGTGGCAGCAGC+TGG | + | chr1_2:51871928-51871947 | None:intergenic | 60.0% |
| TGTTGACGTTGCGGGCCCTT+CGG | + | chr1_2:51871992-51872011 | None:intergenic | 60.0% | |
| TGGGAGACAGGCGATGGAAG+AGG | - | chr1_2:51873010-51873029 | Msa0076030:intron | 60.0% | |
| ! | GGCGGAGGTGCAGACTGAAA+AGG | + | chr1_2:51873355-51873374 | None:intergenic | 60.0% |
| GAGGGCTAGGGAGATTGCCA+AGG | - | chr1_2:51874190-51874209 | Msa0076030:intron | 60.0% | |
| CCCTTCCCCGTTTCCCTCTA+TGG | + | chr1_2:51874692-51874711 | None:intergenic | 60.0% | |
| GTACCGTCGCTGGAGCTCGA+AGG | - | chr1_2:51870241-51870260 | Msa0076030:CDS | 65.0% | |
| GTTGCGGGCCCTTCGGAGAA+TGG | + | chr1_2:51871985-51872004 | None:intergenic | 65.0% | |
| AGCGACGAGGAGTGGGAGAC+AGG | - | chr1_2:51872998-51873017 | Msa0076030:intron | 65.0% | |
| GAGGAGTGGGAGACAGGCGA+TGG | - | chr1_2:51873004-51873023 | Msa0076030:intron | 65.0% | |
| !! | AAAGGTTGTGGTGGCGGCGG+AGG | + | chr1_2:51873370-51873389 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 51869980 | 51875865 | 51869980 | ID=Msa0076030;Name=Msa0076030 |
| chr1_2 | mRNA | 51869980 | 51875865 | 51869980 | ID=Msa0076030-mRNA-1;Parent=Msa0076030;Name=Msa0076030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=342|0.85|0.87|0.87|0.71|0.75|8|0|255 |
| chr1_2 | exon | 51869980 | 51870008 | 51869980 | ID=Msa0076030-mRNA-1:exon:15956;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51870192 | 51870264 | 51870192 | ID=Msa0076030-mRNA-1:exon:15955;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51870956 | 51871021 | 51870956 | ID=Msa0076030-mRNA-1:exon:15954;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51871616 | 51871699 | 51871616 | ID=Msa0076030-mRNA-1:exon:15953;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51871795 | 51872134 | 51871795 | ID=Msa0076030-mRNA-1:exon:15952;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51872330 | 51872551 | 51872330 | ID=Msa0076030-mRNA-1:exon:15951;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51875492 | 51875603 | 51875492 | ID=Msa0076030-mRNA-1:exon:15950;Parent=Msa0076030-mRNA-1 |
| chr1_2 | exon | 51875682 | 51875865 | 51875682 | ID=Msa0076030-mRNA-1:exon:15949;Parent=Msa0076030-mRNA-1 |
| chr1_2 | five_prime_UTR | 51875682 | 51875865 | 51875682 | ID=Msa0076030-mRNA-1:five_prime_utr;Parent=Msa0076030-mRNA-1 |
| chr1_2 | five_prime_UTR | 51875492 | 51875603 | 51875492 | ID=Msa0076030-mRNA-1:five_prime_utr;Parent=Msa0076030-mRNA-1 |
| chr1_2 | five_prime_UTR | 51872506 | 51872551 | 51872506 | ID=Msa0076030-mRNA-1:five_prime_utr;Parent=Msa0076030-mRNA-1 |
| chr1_2 | CDS | 51872330 | 51872505 | 51872330 | ID=Msa0076030-mRNA-1:cds;Parent=Msa0076030-mRNA-1 |
| chr1_2 | CDS | 51871795 | 51872134 | 51871795 | ID=Msa0076030-mRNA-1:cds;Parent=Msa0076030-mRNA-1 |
| chr1_2 | CDS | 51871616 | 51871699 | 51871616 | ID=Msa0076030-mRNA-1:cds;Parent=Msa0076030-mRNA-1 |
| chr1_2 | CDS | 51870956 | 51871021 | 51870956 | ID=Msa0076030-mRNA-1:cds;Parent=Msa0076030-mRNA-1 |
| chr1_2 | CDS | 51870192 | 51870264 | 51870192 | ID=Msa0076030-mRNA-1:cds;Parent=Msa0076030-mRNA-1 |
| chr1_2 | CDS | 51869980 | 51870008 | 51869980 | ID=Msa0076030-mRNA-1:cds;Parent=Msa0076030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
