AlfalfaGEDB | Msa0076130

M. sativa cultivar zhongmu-4 / Msa0076130

KEGG: K20717
GO: GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076130	XP_003592222.1	97.052	916	10	1	1	916	1	899	0.0	1800

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076130	sp\|Q9CAD5\|YODA_ARATH	57.018	919	351	16	1	914	1	880	0.0	864

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076130	G7IEP0	97.052	916	10	1	1	916	1	899	0.0	1800

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0076130	Msa0133420	0.997300	3.853615e-240	-8.615850e-47
Msa0076130	Msa0184830	0.998277	1.312785e-260	-8.615850e-47
Msa0076130	Msa0184870	0.985752	1.491158e-164	-8.615850e-47
Msa0076130	Msa0791140	0.986541	3.901531e-167	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076130	MtrunA17_Chr1g0202831	97.052	916	10	1	1	916	1	899	0.0	1800
Msa0076130	MtrunA17_Chr8g0386981	52.671	936	385	21	1	916	1	898	0.0	807
Msa0076130	MtrunA17_Chr3g0130151	50.759	461	188	10	325	778	167	595	1.19e-135	420
Msa0076130	MtrunA17_Chr8g0384301	58.757	354	118	4	332	685	231	556	7.78e-133	414
Msa0076130	MtrunA17_Chr5g0402601	53.374	326	120	7	367	685	334	634	1.24e-106	345
Msa0076130	MtrunA17_Chr3g0133541	43.137	408	175	10	302	686	197	570	1.44e-89	300
Msa0076130	MtrunA17_Chr7g0272841	52.482	282	114	4	410	686	67	333	3.27e-85	286
Msa0076130	MtrunA17_Chr1g0205931	48.936	282	120	7	410	684	54	318	9.01e-79	269
Msa0076130	MtrunA17_Chr5g0424501	46.897	290	131	7	397	685	179	446	4.17e-76	256
Msa0076130	MtrunA17_Chr5g0424581	45.517	290	136	6	397	685	111	379	4.81e-75	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076130	AT1G63700.1	57.018	919	351	16	1	914	1	880	0.0	864
Msa0076130	AT1G63700.2	57.018	919	351	16	1	914	1	880	0.0	864
Msa0076130	AT1G53570.6	56.868	364	130	4	323	685	134	471	1.53e-128	397
Msa0076130	AT1G53570.7	56.868	364	130	4	323	685	134	471	1.61e-128	397
Msa0076130	AT1G53570.2	56.868	364	130	4	323	685	134	471	1.76e-127	398
Msa0076130	AT1G53570.3	56.868	364	130	4	323	685	134	471	1.76e-127	398
Msa0076130	AT1G53570.4	56.868	364	130	4	323	685	134	471	2.08e-127	397
Msa0076130	AT1G53570.1	56.868	364	130	4	323	685	134	471	2.22e-127	397
Msa0076130	AT1G53570.5	46.725	458	183	9	323	778	134	532	1.81e-110	352
Msa0076130	AT5G66850.2	52.394	355	128	9	341	687	289	610	2.29e-107	347

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Find 315 sgRNAs with CRISPR-Local

Find 543 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAAAATGTGAGAAA+TGG	0.409124	1_2:-51941519	None:intergenic
AAAAGGCATGATCCAGCCAT+AGG	0.588989	1_2:-51942771	None:intergenic
AAAATCTAAGGAATTTGATC+TGG	0.472702	1_2:+51948415	Msa0076130:three_prime_UTR
AAAATTGCATAGTCTAGTAT+GGG	0.492734	1_2:+51947942	Msa0076130:three_prime_UTR
AAAATTTAAATTTCCATCTG+AGG	0.483300	1_2:+51942980	Msa0076130:CDS
AAACCTTCATGCATACGTTG+TGG	0.586687	1_2:+51943272	Msa0076130:CDS
AAACTAAGCACTATATCTGG+AGG	0.660612	1_2:+51943005	Msa0076130:CDS
AAACTTGAAGGGTGCAAACC+CGG	0.545351	1_2:-51943164	None:intergenic
AAAGAAACCAAGAAGAAAGC+AGG	0.557674	1_2:+51942927	Msa0076130:CDS
AAAGGAAAGCTGCTTGGCAG+AGG	0.539089	1_2:+51944267	Msa0076130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCCAAAATGTGAGAAA+TGG	-	chr1_2:51941522-51941541	None:intergenic	30.0%
ATTTCACTCTATGATCAACT+GGG	+	chr1_2:51941702-51941721	Msa0076130:intron	30.0%
TTGGAGTTAGGATATTAAGT+GGG	+	chr1_2:51942059-51942078	Msa0076130:intron	30.0%
ATGTTGCATGGATTTATATC+TGG	+	chr1_2:51942382-51942401	Msa0076130:intron	30.0%
ACTTTACTAAGTTTCAAGCT+TGG	+	chr1_2:51942451-51942470	Msa0076130:intron	30.0%
ATACCAGATAAGCTAATACT+TGG	-	chr1_2:51942486-51942505	None:intergenic	30.0%
TTGATTCTTAATCGGTAAAC+CGG	-	chr1_2:51942611-51942630	None:intergenic	30.0%
TGGAATTTGTAAATCTCCTA+TGG	+	chr1_2:51942755-51942774	Msa0076130:five_prime_UTR	30.0%
AATGACACAATTTCAGAGAA+GGG	+	chr1_2:51943044-51943063	Msa0076130:CDS	30.0%
ATGCAATAACATGTACAATG+TGG	-	chr1_2:51943481-51943500	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	51941397	51948438	51941397	ID=Msa0076130;Name=Msa0076130
chr1_2	mRNA	51941397	51948438	51941397	ID=Msa0076130-mRNA-1;Parent=Msa0076130;Name=Msa0076130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=460\|0.91\|0.92\|1\|0.83\|0.69\|13\|618\|916
chr1_2	exon	51941397	51941657	51941397	ID=Msa0076130-mRNA-1:exon:15971;Parent=Msa0076130-mRNA-1
chr1_2	exon	51942698	51943450	51942698	ID=Msa0076130-mRNA-1:exon:15972;Parent=Msa0076130-mRNA-1
chr1_2	exon	51943585	51944322	51943585	ID=Msa0076130-mRNA-1:exon:15973;Parent=Msa0076130-mRNA-1
chr1_2	exon	51944431	51944518	51944431	ID=Msa0076130-mRNA-1:exon:15974;Parent=Msa0076130-mRNA-1
chr1_2	exon	51944652	51944714	51944652	ID=Msa0076130-mRNA-1:exon:15975;Parent=Msa0076130-mRNA-1
chr1_2	exon	51944934	51945094	51944934	ID=Msa0076130-mRNA-1:exon:15976;Parent=Msa0076130-mRNA-1
chr1_2	exon	51945212	51945287	51945212	ID=Msa0076130-mRNA-1:exon:15977;Parent=Msa0076130-mRNA-1
chr1_2	exon	51945599	51945709	51945599	ID=Msa0076130-mRNA-1:exon:15978;Parent=Msa0076130-mRNA-1
chr1_2	exon	51945800	51945907	51945800	ID=Msa0076130-mRNA-1:exon:15979;Parent=Msa0076130-mRNA-1
chr1_2	exon	51946039	51946278	51946039	ID=Msa0076130-mRNA-1:exon:15980;Parent=Msa0076130-mRNA-1
chr1_2	exon	51947073	51947164	51947073	ID=Msa0076130-mRNA-1:exon:15981;Parent=Msa0076130-mRNA-1
chr1_2	exon	51947274	51948139	51947274	ID=Msa0076130-mRNA-1:exon:15982;Parent=Msa0076130-mRNA-1
chr1_2	exon	51948167	51948438	51948167	ID=Msa0076130-mRNA-1:exon:15983;Parent=Msa0076130-mRNA-1
chr1_2	five_prime_UTR	51941397	51941657	51941397	ID=Msa0076130-mRNA-1:five_prime_utr;Parent=Msa0076130-mRNA-1
chr1_2	five_prime_UTR	51942698	51942896	51942698	ID=Msa0076130-mRNA-1:five_prime_utr;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51942897	51943450	51942897	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51943585	51944322	51943585	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51944431	51944518	51944431	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51944652	51944714	51944652	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51944934	51945094	51944934	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51945212	51945287	51945212	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51945599	51945709	51945599	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51945800	51945907	51945800	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51946039	51946278	51946039	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51947073	51947164	51947073	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	CDS	51947274	51947793	51947274	ID=Msa0076130-mRNA-1:cds;Parent=Msa0076130-mRNA-1
chr1_2	three_prime_UTR	51947794	51948139	51947794	ID=Msa0076130-mRNA-1:three_prime_utr;Parent=Msa0076130-mRNA-1
chr1_2	three_prime_UTR	51948167	51948438	51948167	ID=Msa0076130-mRNA-1:three_prime_utr;Parent=Msa0076130-mRNA-1

Gene Sequence

>Msa0076130

ATGCCTACATGGTGGGGAAAATCATCATCAAAAGAAACCAAGAAGAAAGCAGGTAAGGAAAGTATTATTGACACATTGCACAGAAAATTTAAATTTCCATCTGAGGGTAAACTAAGCACTATATCTGGAGGATCTCGTAGACGGAGCAATGACACAATTTCAGAGAAGGGGGACCGTTCTCCATCTGAATCAAGATCCCCTTCACCTTCCAAAGTAGCAAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAACCCCTTCCACTTCCGGGTTTGCACCCTTCAAGTTTAGGTCGAGTTGATTCTGAAATTAGTATATCAGTGAAATCGAGACTGGAAAAGCCCTCCAAGCCGTCATTATTTCTTCCACTTCCAAAACCTTCATGCATACGTTGTGGGCCAACTCCTGCAGATTTAGATGGAGATATGGTCAATGCTTCAGTCTTCAGTGATTGCTCTGCTGATAGTGACGAGCCAGCAGACTCACGCAACCGCAGTCCTCTGGCAACTGACTCGGAAACTGGTCCAAGAACTGCTGCCGGCAGTCCTTCCAGCTTGGTGCTCAAGGATCAATCATCTGCTGTTTCCCAACCGAATTCGAGAGAAGTTAAAAAAACGGCAAACATTCTCAGTAATCACACACCTTCTACTTCACCAAAACGGAAGCCATTACGCCACCATGTTCCAAATCTTCAAGTTCCACCTCATGGTGTCTTCTATAGTGGTCCCGACAGTTCCTTGTCAAGTCCATCAAGAAGTCCGTTGAGGGCATTTGGTACAGATCAGGTGTTGAACTCTGCTTTTTGGGCTGGAAAGCCATATCCAGAGATCAATTTCGTTGGATCTGGCCACTGCTCTAGTCCAGGTTCTGGTCACAATTCTGGGCATAATTCAATGGGAGGGGACATGTCAGGACCATTATTTTGGCAACCAAGTAGGGGTAGCCCTGAGTATTCTCCAATACCTAGCCCTAGAATGACTAGCCCTGGTCCAAGCTCAAGAATTCAGAGTGGAGCAGTCACACCTATTCATCCTAGAGCAGGGGGAACACCAACTGAATCACAGACAGGACGGGTTGATGATGGAAAACAACAAAGTCATCGTTTGCCCCTCCCTCCTTTAACAGTTACCAATACCTCGCCATTCTCTCATTCTAATTCTGCAGCAACATCTCCATCTATGCCGAGAAGTCCAGCTAGAGCAGATAGTCCAATGAGCTCTGGGTCACGTTGGAAAAAAGGAAAGCTGCTTGGCAGAGGTACATTTGGGCACGTCTATATTGGTTTCAATAGTCAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACTCTGTTTTCAGATGATGCCAAGTCTTTGGAAAGCGCTAAGCAATTGATGCAGGAAGTTCATTTATTAAGCCGTTTAAGACATCCAAATATTGTGCAGTATTATGGCTCTGAAACGGGAGATGACAAGCTTTACATATACCTTGAGTATGTATCTGGAGGTTCCATACATAAACTTCTTCAAGAATATGGGCAATTTGGTGAACTAGCTATTCGAAGTTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTACATGCTAAAAATACTCTTCACAGGGACATCAAAGGAGCAAACATATTGGTAGATCCAAATGGTCGGGTCAAGGTTGCAGACTTTGGCATGGCAAAACATGACGTGCATGATTTGTCCCATTTGTTGTACTTACAATTACATGATTCACAGATAACAGGGCAATACTGTCCATTGTCATTCAAAGGAAGTCCTTATTGGATGGCTCCCGAGGTTATAAAGAACTCCAAGGAATGCAGCCTTGGTGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACGAAGCCTCCTTGGTCTCAGTATGAAGGGGTTGCTGCCATGTTCAAAATTGGTAACAGCAAGGAGCTCCCAACAATTCCAGATCATCTCTCAAATGAAGGAAAAGATTTTGTTAGAAAATGTCTACAACGTAATCCACGTGATCGCCCTTCAGCAAGTGAATTATTAGAACACCCTTTTGTAAAAGGTGCTGCACCTTTGGAAAGACCTATTATGGTTCCCGAAGCTTCAGACCCTATTACAGGAATTACACATGGAACAAAAGCTCTGGGCATTGGACAAGGAAGGAATCTGTCTGCCTTGGATTCAGATAAACTCTTGGTTCATTCTTCTAGGGTTTTGAAAAATAATCCTCATGAAAGTGAAATCCATATTCAAAGGAATATATCTTGCCCAGTCTCTCCCATTGGAAGCCCACTTTTGAGGTCAAGATCACCACAGCAGAGGAGTGGGAGACTGTCTCCTTCTCCTATATCTAGCCCTCGGACCGCTTCTGGTGCATCCACGCCTCTCACTGGCGGCAGTGGTGCCATTCCATTCAGTAACCACTTAAAACAATCAGTTTACTTTCAAGAGTGTCTCGGAAGCATGCCGAAATCCCCAAATGGTGCCTACATTAACGGCTCTTCTCACCACGATTCAAATATCGACATTTTTCAAAGAATGCAAGCCGGGTCTCACATTAAATCAGAACTAGTCTCCAGTGATAATGATGCTCTTGGCAAGCAGTTCGTAAGGTCTCCTCATGCAGAACCGTATGACTTTCAGTCGGTCTTAGCTGATCGTGTTGGCCGGCAGCTTCTGGGGGATCATGTTAAGATTAACCCATCATTTGATCCAAGTCCCAGCTCAACGATGCTCAACCGGACAAATGGTTTATGA

Protein sequence

>Msa0076130

MPTWWGKSSSKETKKKAGKESIIDTLHRKFKFPSEGKLSTISGGSRRRSNDTISEKGDRSPSESRSPSPSKVARCQSFAERPHAQPLPLPGLHPSSLGRVDSEISISVKSRLEKPSKPSLFLPLPKPSCIRCGPTPADLDGDMVNASVFSDCSADSDEPADSRNRSPLATDSETGPRTAAGSPSSLVLKDQSSAVSQPNSREVKKTANILSNHTPSTSPKRKPLRHHVPNLQVPPHGVFYSGPDSSLSSPSRSPLRAFGTDQVLNSAFWAGKPYPEINFVGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPIPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPTESQTGRVDDGKQQSHRLPLPPLTVTNTSPFSHSNSAATSPSMPRSPARADSPMSSGSRWKKGKLLGRGTFGHVYIGFNSQSGEMCAMKEVTLFSDDAKSLESAKQLMQEVHLLSRLRHPNIVQYYGSETGDDKLYIYLEYVSGGSIHKLLQEYGQFGELAIRSYTQQILSGLAYLHAKNTLHRDIKGANILVDPNGRVKVADFGMAKHDVHDLSHLLYLQLHDSQITGQYCPLSFKGSPYWMAPEVIKNSKECSLGVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSNEGKDFVRKCLQRNPRDRPSASELLEHPFVKGAAPLERPIMVPEASDPITGITHGTKALGIGQGRNLSALDSDKLLVHSSRVLKNNPHESEIHIQRNISCPVSPIGSPLLRSRSPQQRSGRLSPSPISSPRTASGASTPLTGGSGAIPFSNHLKQSVYFQECLGSMPKSPNGAYINGSSHHDSNIDIFQRMQAGSHIKSELVSSDNDALGKQFVRSPHAEPYDFQSVLADRVGRQLLGDHVKINPSFDPSPSSTMLNRTNGL*