AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078570 MtrunA17_Chr1g0189211 97.807 1231 27 0 56 1286 1 1231 0.0 2509
Msa0078570 MtrunA17_Chr8g0380981 56.661 563 237 2 187 745 25 584 0.0 657
Msa0078570 MtrunA17_Chr8g0380981 31.513 238 135 3 1073 1282 816 1053 1.72e-31 134
Msa0078570 MtrunA17_Chr2g0303101 56.780 590 247 4 180 767 27 610 0.0 654
Msa0078570 MtrunA17_Chr2g0303101 36.364 242 142 3 1053 1283 762 1002 2.00e-34 143
Msa0078570 MtrunA17_Chr7g0261401 47.845 696 324 9 75 752 3 677 0.0 652
Msa0078570 MtrunA17_Chr5g0397501 40.143 421 211 6 314 725 295 683 3.93e-88 313
Msa0078570 MtrunA17_Chr5g0397501 48.936 94 44 1 200 293 23 112 3.97e-18 90.9
Msa0078570 MtrunA17_Chr5g0410721 28.349 642 349 20 122 738 4 559 2.60e-59 220
Msa0078570 MtrunA17_Chr1g0164731 29.705 542 280 16 202 725 42 500 2.36e-51 191
Msa0078570 MtrunA17_Chr3g0116441 33.773 379 169 12 205 567 18 330 1.72e-50 196
Msa0078570 MtrunA17_Chr1g0164761 26.591 613 335 16 203 803 6 515 7.84e-45 171
Msa0078570 MtrunA17_Chr1g0199511 43.784 185 91 2 416 592 295 474 5.44e-39 159
Msa0078570 MtrunA17_Chr7g0214951 38.760 129 62 5 426 552 88 201 3.24e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078570 AT1G08620.3 54.841 1260 479 23 59 1281 14 1220 0.0 1231
Msa0078570 AT1G08620.2 54.885 1259 478 23 60 1281 1 1206 0.0 1229
Msa0078570 AT1G08620.4 54.885 1259 478 23 60 1281 1 1206 0.0 1229
Msa0078570 AT1G08620.1 54.885 1259 478 23 60 1281 1 1206 0.0 1229
Msa0078570 AT4G20400.1 57.428 552 229 4 187 735 38 586 0.0 666
Msa0078570 AT4G20400.1 41.146 192 102 2 1073 1260 746 930 1.75e-36 150
Msa0078570 AT1G30810.3 58.036 560 224 6 186 741 40 592 0.0 652
Msa0078570 AT1G30810.3 48.299 147 70 2 1057 1203 648 788 1.05e-34 144
Msa0078570 AT1G30810.2 58.036 560 224 6 186 741 40 592 0.0 652
Msa0078570 AT1G30810.2 48.299 147 70 2 1057 1203 648 788 1.05e-34 144
Msa0078570 AT1G30810.1 58.036 560 224 6 186 741 40 592 0.0 652
Msa0078570 AT1G30810.1 48.299 147 70 2 1057 1203 648 788 1.05e-34 144
Msa0078570 AT4G20400.2 57.414 526 218 4 213 735 7 529 0.0 629
Msa0078570 AT4G20400.2 41.146 192 102 2 1073 1260 689 873 2.33e-36 149
Msa0078570 AT2G34880.1 55.437 561 214 11 187 734 43 580 0.0 620
Msa0078570 AT2G34880.1 45.333 150 78 1 1060 1209 636 781 3.38e-32 136
Msa0078570 AT2G38950.1 42.815 682 320 12 60 738 1 615 2.82e-167 515
Msa0078570 AT1G63490.1 41.568 421 204 7 314 725 39 426 1.59e-93 328
Msa0078570 AT1G63490.2 41.568 421 204 7 314 725 292 679 1.24e-92 328
Msa0078570 AT1G63490.2 54.930 71 28 1 205 275 31 97 2.30e-15 82.4
Msa0078570 AT1G63490.4 41.568 421 204 7 314 725 292 679 1.25e-92 328
Msa0078570 AT1G63490.4 54.930 71 28 1 205 275 31 97 2.32e-15 82.4
Msa0078570 AT5G46910.2 32.613 509 246 18 201 694 99 525 1.53e-58 214
Msa0078570 AT5G46910.1 33.006 509 244 18 201 694 99 525 1.13e-57 215
Msa0078570 AT3G48430.1 32.732 388 187 10 205 567 20 358 3.20e-45 179
Msa0078570 AT1G63490.3 39.662 237 122 5 493 725 1 220 1.83e-42 169
Msa0078570 AT5G04240.1 49.032 155 76 1 416 567 263 417 8.42e-41 165

Find 337 sgRNAs with CRISPR-Local

Find 723 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTACCTTCACTATTTC+TGG 0.085763 1_2:+56188499 None:intergenic
CGTAAGATCTTTGCTATTAA+AGG 0.127451 1_2:-56190327 Msa0078570:CDS
ACCCTAGGTGATTGATTATT+TGG 0.142173 1_2:-56187328 Msa0078570:exon
GAATTTGGAGTTGTGCTTTC+TGG 0.173881 1_2:-56189574 Msa0078570:CDS
ATATACTTCTAGGTGCTTTA+TGG 0.174748 1_2:-56194892 Msa0078570:intron
ACGTGGTTCGCCTCTATTTA+TGG 0.180896 1_2:-56189335 Msa0078570:intron
CCGGCCATTATTATTCATTT+TGG 0.192280 1_2:-56187029 Msa0078570:three_prime_UTR
GAGATATGCAGACGAGTTTA+AGG 0.201979 1_2:-56195149 Msa0078570:CDS
TAGAAAATAAAATTAGAAAA+AGG 0.211399 1_2:-56187164 Msa0078570:three_prime_UTR
CATCCTGCTGGCAGCCTTGA+TGG 0.221423 1_2:-56188547 Msa0078570:CDS
AATGTTTCCAAGGTAAATTC+TGG 0.245334 1_2:+56195175 None:intergenic
CTTCGTCCAACCTTAGTCTT+TGG 0.257535 1_2:-56187236 Msa0078570:three_prime_UTR
GAATAAAGTCCCCAGGGTTT+TGG 0.264163 1_2:+56192799 None:intergenic
GATCTGGAAACTGGGAGTTT+TGG 0.275624 1_2:-56194865 Msa0078570:CDS
ACACTTCAGATAATCTAAAA+TGG 0.275965 1_2:-56192557 Msa0078570:CDS
CGGTCATAGTTTAGAAAGTT+TGG 0.290867 1_2:-56189809 Msa0078570:CDS
ACTGAAAAGCCTATTTAAAA+AGG 0.295672 1_2:-56187463 Msa0078570:CDS
TATAATTCAATGAATATAAA+TGG 0.296555 1_2:+56193303 None:intergenic
CCAAAGGTGTGCCAGTTTAT+AGG 0.298758 1_2:-56192827 Msa0078570:CDS
TTCATTGAATTATATGCATC+TGG 0.305508 1_2:-56193294 Msa0078570:CDS
CCAACCTTCCAGCACTATTA+AGG 0.311202 1_2:-56189767 Msa0078570:CDS
CTACTGAGACATAAGAAGTT+AGG 0.311501 1_2:+56190541 None:intergenic
GTCGAGTTTGTCATGAATAC+TGG 0.316021 1_2:-56187605 Msa0078570:CDS
ACTTCACAAAATCCTGCATT+AGG 0.330109 1_2:+56195223 None:intergenic
AATTAAGTGCAGTTTATAGA+TGG 0.330862 1_2:-56190587 Msa0078570:CDS
GCTGGCCAGACCACTTTAAA+TGG 0.330997 1_2:-56187549 Msa0078570:CDS
TGCAAAAGATGCATGCAAAT+TGG 0.331245 1_2:-56193243 Msa0078570:CDS
AGATGTCAGATTCAAATAAA+AGG 0.335313 1_2:-56190134 Msa0078570:CDS
CTTAATAGTGCTGGAAGGTT+GGG 0.335439 1_2:+56189768 None:intergenic
CCTTTCTGACGGGAATTGTT+TGG 0.341322 1_2:+56189649 None:intergenic
CTTGATGGCTTTGAAATGTT+TGG 0.342481 1_2:-56188532 Msa0078570:CDS
AATGTTGAGCCTTTGGAATT+TGG 0.347465 1_2:-56189589 Msa0078570:CDS
TACGAGCAGTACATAAAATC+TGG 0.350384 1_2:-56194802 Msa0078570:CDS
TATGGAGCTGATCTGGAAAC+TGG 0.355790 1_2:-56194874 Msa0078570:CDS
TGTGGTCTACGAGCATCTTC+TGG 0.356321 1_2:+56195678 None:intergenic
CCTTTGCATGAGGTCATTGA+TGG 0.356999 1_2:-56196599 Msa0078570:CDS
CAACTGCAATGTTGAGCCTT+TGG 0.357071 1_2:-56189596 Msa0078570:CDS
CCGACTCGTCTCATTCTTCC+AGG 0.358823 1_2:-56190479 Msa0078570:CDS
AGCAACAAAATGCTGGGATA+TGG 0.363018 1_2:-56188638 Msa0078570:CDS
TTTCTCTATAACCTCCATTC+AGG 0.363260 1_2:+56187201 None:intergenic
CACATCTTGAAACAACAATT+AGG 0.363951 1_2:-56186993 Msa0078570:three_prime_UTR
CTAAGAAGTATGATATCTTT+AGG 0.371235 1_2:+56190180 None:intergenic
TGAACCAAAATGAATAATAA+TGG 0.372299 1_2:+56187025 None:intergenic
ACTGGGGTAGAAGGTATAAT+TGG 0.374779 1_2:+56189910 None:intergenic
TATGAAACCAGTGATATATC+TGG 0.375280 1_2:-56194733 Msa0078570:CDS
GAGGTTATAGAGAAAGAAAA+AGG 0.376925 1_2:-56187193 Msa0078570:three_prime_UTR
AAAGTCATGGTGCAGCATTC+AGG 0.377547 1_2:-56189551 Msa0078570:CDS
AAACTTCAGAATCGTAATTC+AGG 0.378487 1_2:-56195334 Msa0078570:CDS
CCTTTGGACTTAAGAATAGA+AGG 0.379081 1_2:+56192843 None:intergenic
CATCCTCTGAGGACTCCTTT+AGG 0.379777 1_2:+56196125 None:intergenic
TTTGTGAAGTTGAAACATTT+GGG 0.380131 1_2:-56195210 Msa0078570:CDS
TTCGTCCAACCTTAGTCTTT+GGG 0.384099 1_2:-56187235 Msa0078570:three_prime_UTR
AGCCATCTCACACGTAGGTT+TGG 0.385671 1_2:+56190353 None:intergenic
GAAAGATCTACTGGGGTAGA+AGG 0.389159 1_2:+56189901 None:intergenic
CCTTTGCACTATCACTCAAT+TGG 0.389769 1_2:+56196383 None:intergenic
CCTATAAACTGGCACACCTT+TGG 0.390004 1_2:+56192827 None:intergenic
GTTCTCCACAGAAGGCTCTA+AGG 0.393810 1_2:+56195063 None:intergenic
AGCAATTGTGTTCATGCTCT+TGG 0.396351 1_2:-56190680 Msa0078570:CDS
ATTTCAGAAATTCTTGATGC+TGG 0.398808 1_2:-56189358 Msa0078570:CDS
GGTGGAGGTGGAAGTGATCA+AGG 0.407845 1_2:-56187528 Msa0078570:CDS
GGTGCTTTATGGAGCTGATC+TGG 0.412536 1_2:-56194881 Msa0078570:CDS
GATAATCATGAGAAGTTTGA+TGG 0.416062 1_2:-56189733 Msa0078570:CDS
CTCATGATAAGCTATTGCTT+GGG 0.417910 1_2:-56192632 Msa0078570:CDS
GTGGTGCCTCGTGAAGATTC+AGG 0.417963 1_2:-56189988 Msa0078570:CDS
ATCAATCACCTAGGGTGGTT+GGG 0.419116 1_2:+56187335 None:intergenic
TCTTGATTGAATTCACAAAC+AGG 0.420350 1_2:+56190270 None:intergenic
CGCTCCAGAGCTGAACCATA+TGG 0.422499 1_2:-56195463 Msa0078570:CDS
CTCATTATTGACATTGCTCC+TGG 0.425065 1_2:+56190461 None:intergenic
ATATGAAAAGAAAGATCTAC+TGG 0.426723 1_2:+56189892 None:intergenic
TTGTGGAAAAGACGGTCTTT+TGG 0.428369 1_2:-56192526 Msa0078570:CDS
ACAAGAATGGGAGTGGATAA+TGG 0.434850 1_2:-56195259 Msa0078570:CDS
AAATATTCTTGTTGAGGCAT+TGG 0.435779 1_2:-56190616 Msa0078570:CDS
CAAGGGCAGCTTTCACAAGC+TGG 0.435829 1_2:-56187567 Msa0078570:CDS
CCTTAATAGTGCTGGAAGGT+TGG 0.436594 1_2:+56189767 None:intergenic
CAGTCAACTCAGGTCGGAAA+TGG 0.437421 1_2:-56196409 Msa0078570:CDS
TCTTCAGTGGGGTAGAAAAC+AGG 0.437666 1_2:+56195642 None:intergenic
TTTCTTTAATCAGGCTATTG+AGG 0.440771 1_2:-56187640 Msa0078570:intron
CTTCCTCCTTTACATCCTGC+TGG 0.441498 1_2:-56188559 Msa0078570:CDS
TTAATGTAGCTCCCGTTGAC+TGG 0.442935 1_2:-56192716 Msa0078570:CDS
AATAACTTTGCAAGGTTACC+AGG 0.445094 1_2:-56194769 Msa0078570:CDS
GACAATGCAAGAGCTGTTAA+CGG 0.445539 1_2:-56189688 Msa0078570:CDS
CTCGTATTGCAAAGGTTGTC+CGG 0.447988 1_2:-56189624 Msa0078570:CDS
GATAGCAAAACAGTTTAAGC+TGG 0.448678 1_2:-56188593 Msa0078570:CDS
GGGACTTCCGTCGGCCTCAA+GGG 0.449299 1_2:-56187584 Msa0078570:CDS
ACAGTTTAAGCTGGGAAGAA+AGG 0.449829 1_2:-56188584 Msa0078570:CDS
TCGGGCAGGTCATTGCTAGA+TGG 0.451167 1_2:-56195704 Msa0078570:intron
AGCACTTACTTTGGAGAAAA+CGG 0.453033 1_2:+56186881 None:intergenic
TTATTTAAAGTGACAGTGTT+TGG 0.453216 1_2:-56187110 Msa0078570:three_prime_UTR
ATGTTTCCAAGGTAAATTCT+GGG 0.454986 1_2:+56195176 None:intergenic
ACAGGAGCATTCTCAATTTG+TGG 0.457135 1_2:+56195660 None:intergenic
TACTGAGACATAAGAAGTTA+GGG 0.459194 1_2:+56190542 None:intergenic
TTAATAGTGCTGGAAGGTTG+GGG 0.459758 1_2:+56189769 None:intergenic
CTACAACCAGCAGGCATATG+AGG 0.461097 1_2:+56190102 None:intergenic
CAGTTTAAGCTGGGAAGAAA+GGG 0.465407 1_2:-56188583 Msa0078570:CDS
CACAGATAGATATGCTTGCT+TGG 0.465453 1_2:-56190712 Msa0078570:CDS
AGGAGAAGATACACAAGAAT+GGG 0.465540 1_2:-56195271 Msa0078570:CDS
CTCCACCATTTAAAGTGGTC+TGG 0.466642 1_2:+56187544 None:intergenic
ATTGGGATCTGTTCAGCCGC+TGG 0.469647 1_2:+56187390 None:intergenic
AACCGCTCTCGCACTTTCCA+TGG 0.471094 1_2:+56196326 None:intergenic
GAAACATTTGGGTTTGAACC+TGG 0.471947 1_2:-56195199 Msa0078570:CDS
GTGACAGATGCTTCTGTGAC+GGG 0.472904 1_2:-56190027 Msa0078570:CDS
TTTCCTCGAGCCTACCACTC+TGG 0.473140 1_2:-56192771 Msa0078570:CDS
GTTCTTAGCCTTAATAGTGC+TGG 0.474222 1_2:+56189759 None:intergenic
TGATGGGGACTGAGCTTATG+AGG 0.475896 1_2:-56196582 Msa0078570:CDS
ACCAGCTTATGAAGCAAGTC+AGG 0.476038 1_2:+56193176 None:intergenic
TTAAAGTGACAGTGTTTGGA+TGG 0.479784 1_2:-56187106 Msa0078570:three_prime_UTR
TCAAAACCCGGTGGAACTGA+TGG 0.480383 1_2:+56196532 None:intergenic
GTGGGTGTGTGCTGATTCAT+AGG 0.481324 1_2:+56187501 None:intergenic
ATATGTCAGCAACAAAATGC+TGG 0.483599 1_2:-56188645 Msa0078570:CDS
TATAGAGCTGTACCGGGAGC+AGG 0.483687 1_2:-56192673 Msa0078570:CDS
TCCAAGGTAAATTCTGGGCC+AGG 0.485498 1_2:+56195181 None:intergenic
TCCCTAGGCACGTGTTGAGA+TGG 0.488807 1_2:-56190871 Msa0078570:intron
TGGGACTTCCGTCGGCCTCA+AGG 0.488914 1_2:-56187585 Msa0078570:CDS
GATGCTGCATTCCCTTTCAC+TGG 0.491538 1_2:+56190779 None:intergenic
CCATGTGGAAGCCAGTCAAC+GGG 0.493014 1_2:+56192705 None:intergenic
AGCTATTGCTTGGGGCTGCT+AGG 0.493060 1_2:-56192623 Msa0078570:CDS
AATCAATCACCTAGGGTGGT+TGG 0.493285 1_2:+56187334 None:intergenic
TACCACTCTGGGTTCAATTG+TGG 0.495819 1_2:-56192759 Msa0078570:CDS
AAAATAATATGAAAAGGAAA+AGG 0.496493 1_2:-56195291 Msa0078570:CDS
TTCCTCGAGCCTACCACTCT+GGG 0.496688 1_2:-56192770 Msa0078570:CDS
ACCTGACTTGCTTCATAAGC+TGG 0.496715 1_2:-56193177 Msa0078570:intron
AGAACATTGAGGGTGAATAC+TGG 0.497381 1_2:-56195045 Msa0078570:CDS
CTTTGCATGAGGTCATTGAT+GGG 0.497772 1_2:-56196598 Msa0078570:CDS
CAGTACTGCAACAGCTCCGG+TGG 0.499434 1_2:+56187482 None:intergenic
TTTCAGTACTGCAACAGCTC+CGG 0.500505 1_2:+56187479 None:intergenic
GGAATTTAAATAACTTTGCA+AGG 0.501860 1_2:-56194777 Msa0078570:CDS
GATGGGCAAAATTAGACCTT+GGG 0.502818 1_2:-56190569 Msa0078570:CDS
TCTCATGATAAGCTATTGCT+TGG 0.503200 1_2:-56192633 Msa0078570:CDS
ATTAAGTGCAGTTTATAGAT+GGG 0.503880 1_2:-56190586 Msa0078570:CDS
CTAAAATGGAAAGATGTTTG+TGG 0.503920 1_2:-56192543 Msa0078570:CDS
GCTATTGCTTGGGGCTGCTA+GGG 0.503959 1_2:-56192622 Msa0078570:CDS
GAATTTGCTTGATCCACCAT+TGG 0.504421 1_2:+56190420 None:intergenic
ATATTGCTATAGAGCTGTAC+CGG 0.504818 1_2:-56192680 Msa0078570:CDS
TAATCCATCTTCTTCGTCGA+AGG 0.506262 1_2:+56196350 None:intergenic
CACTGATATCATAACGAAAG+AGG 0.506620 1_2:+56190643 None:intergenic
GAGGTTCCTCATATGCCTGC+TGG 0.507498 1_2:-56190108 Msa0078570:CDS
GCATCCGCTCTTGTAGAAGC+TGG 0.507863 1_2:+56189835 None:intergenic
AGATGGGCAAAATTAGACCT+TGG 0.509421 1_2:-56190570 Msa0078570:CDS
TGCTTATTGCCCTTTGCATG+AGG 0.511863 1_2:-56196609 Msa0078570:CDS
TCTATCTGTGGAACAGTGAC+AGG 0.513239 1_2:+56190725 None:intergenic
ATTTCTCTGCAGTTCTTCAA+AGG 0.513564 1_2:-56190832 Msa0078570:CDS
ACAATACGACAGATTCCATA+TGG 0.514238 1_2:+56195448 None:intergenic
GATCCCTTCGACGAAGAAGA+TGG 0.514849 1_2:-56196354 Msa0078570:CDS
GGTGAAAGTACCATAAATAG+AGG 0.514863 1_2:+56189325 None:intergenic
ATATGAATGAAGACCTCCCT+TGG 0.515015 1_2:+56188664 None:intergenic
TCCACCTCCACCATTTAAAG+TGG 0.515100 1_2:+56187539 None:intergenic
AGTGACAGGCAGCAGCAGAT+AGG 0.515405 1_2:+56190739 None:intergenic
AAGGAGAAGATACACAAGAA+TGG 0.517540 1_2:-56195272 Msa0078570:CDS
TCATAAGAGAGCAGAGATCC+TGG 0.517816 1_2:+56194751 None:intergenic
GTCACAGAAGCATCTGTCAC+AGG 0.518594 1_2:+56190030 None:intergenic
TGAGATGGAGCGGGTAAGAA+GGG 0.519970 1_2:-56190856 Msa0078570:CDS
GCTTTATTTCTACAACCAGC+AGG 0.520012 1_2:+56190093 None:intergenic
TTGAGATGGAGCGGGTAAGA+AGG 0.520449 1_2:-56190857 Msa0078570:CDS
CATCAATGACCTCATGCAAA+GGG 0.522361 1_2:+56196600 None:intergenic
GATTCCATATGGTTCAGCTC+TGG 0.522502 1_2:+56195459 None:intergenic
ACCTGGCCCAGAATTTACCT+TGG 0.522610 1_2:-56195182 Msa0078570:CDS
ATGGGAGTGGATAATGGCAC+TGG 0.522790 1_2:-56195253 Msa0078570:CDS
AGGCTGCCAGCAGGATGTAA+AGG 0.525653 1_2:+56188553 None:intergenic
GAAATTCTTGATGCTGGACG+TGG 0.526135 1_2:-56189352 Msa0078570:CDS
ACCACTTTAAATGGTGGAGG+TGG 0.528058 1_2:-56187540 Msa0078570:CDS
AAAGTTTCAAAGCGTCACTT+TGG 0.528451 1_2:-56187083 Msa0078570:three_prime_UTR
AACGTATGCATCTAGAGTCC+AGG 0.529392 1_2:+56186950 None:intergenic
CCTTCTATTCTTAAGTCCAA+AGG 0.529594 1_2:-56192843 Msa0078570:CDS
GGATTCAAAATAATATGAAA+AGG 0.530544 1_2:-56195297 Msa0078570:CDS
TCTATAACCTCCATTCAGGC+GGG 0.532417 1_2:+56187205 None:intergenic
TCAGCAAAGTAATCTCCCAC+TGG 0.533185 1_2:+56192586 None:intergenic
AAGTCTTACGCCCCTGCTCC+CGG 0.533537 1_2:+56192661 None:intergenic
CCCTCAATGTTCTCCACAGA+AGG 0.534758 1_2:+56195055 None:intergenic
GTGGAGGTGGAAGTGATCAA+GGG 0.537026 1_2:-56187527 Msa0078570:CDS
TACCTTCACTATTTCTGGTG+AGG 0.537294 1_2:+56188504 None:intergenic
ATTCTTGTTGAGGCATTGGA+AGG 0.540387 1_2:-56190612 Msa0078570:CDS
GGCAAAATTAGACCTTGGGC+TGG 0.540388 1_2:-56190565 Msa0078570:CDS
TCGAGACCTTGTCTTCCTAA+AGG 0.541010 1_2:-56196140 Msa0078570:CDS
CCTTCTGTGGAGAACATTGA+GGG 0.542353 1_2:-56195055 Msa0078570:CDS
TATAGGTGTGTCCAAAACCC+TGG 0.542698 1_2:-56192810 Msa0078570:CDS
TCCAAATAATCAATCACCTA+GGG 0.542902 1_2:+56187327 None:intergenic
ATTCTGAAAGGCAAGGCTAC+CGG 0.543318 1_2:-56187048 Msa0078570:three_prime_UTR
AAGATACACAAGAATGGGAG+TGG 0.544114 1_2:-56195266 Msa0078570:CDS
GTGACCTCAATTTCTTCAGT+AGG 0.545384 1_2:+56195007 None:intergenic
AAAATTGTTGTATTAGCACT+TGG 0.546222 1_2:+56195094 None:intergenic
ATAGGTGTGTCCAAAACCCT+GGG 0.549131 1_2:-56192809 Msa0078570:CDS
ATAGAGCTGTACCGGGAGCA+GGG 0.549215 1_2:-56192672 Msa0078570:CDS
CTTTATTTGTACAGGGAAGA+CGG 0.549297 1_2:-56196646 Msa0078570:intron
GAAACCTCCTTGTCCTCTCA+AGG 0.549308 1_2:-56195410 Msa0078570:CDS
TTCAGGTAACTGCTTTCTCA+TGG 0.551566 1_2:+56193214 None:intergenic
TGTCCTTACCCAACAAAATG+AGG 0.552174 1_2:+56194672 None:intergenic
GTAGTGCCATGGTTGTATAT+AGG 0.552380 1_2:-56194706 Msa0078570:CDS
CCAAAATGAATAATAATGGC+CGG 0.552514 1_2:+56187029 None:intergenic
CTCTATAACCTCCATTCAGG+CGG 0.552960 1_2:+56187204 None:intergenic
CAAACATTTCAAAGCCATCA+AGG 0.553002 1_2:+56188533 None:intergenic
GGAAGCAGTACGAGCCCAGT+GGG 0.554824 1_2:-56192601 Msa0078570:CDS
AACTTCAGAATCGTAATTCA+GGG 0.556069 1_2:-56195333 Msa0078570:CDS
ATTGTCTGTTACATTAGAAG+TGG 0.556348 1_2:+56189705 None:intergenic
CCAAACAATTCCCGTCAGAA+AGG 0.556450 1_2:-56189649 Msa0078570:CDS
CCCGTTGACTGGCTTCCACA+TGG 0.556697 1_2:-56192705 Msa0078570:CDS
TGAACTAAATATTCTTGTTG+AGG 0.557197 1_2:-56190622 Msa0078570:CDS
AGCAAATTCTGCAAATAGCA+AGG 0.558046 1_2:-56190406 Msa0078570:CDS
TCACAAAACCCAACCACCCT+AGG 0.559107 1_2:-56187343 Msa0078570:exon
TGTGACAGATGCTTCTGTGA+CGG 0.559586 1_2:-56190028 Msa0078570:CDS
TCATTGAATTATATGCATCT+GGG 0.560710 1_2:-56193293 Msa0078570:CDS
AATGTTAGAATAAAGTCCCC+AGG 0.560998 1_2:+56192792 None:intergenic
AGATGCATGCAAATTGGAAG+AGG 0.562156 1_2:-56193237 Msa0078570:CDS
TATGTCAGCAACAAAATGCT+GGG 0.562554 1_2:-56188644 Msa0078570:CDS
AATTCACAAACAGGGACACT+CGG 0.563265 1_2:+56190279 None:intergenic
GAAACTTGACTAGACTTGCT+AGG 0.565216 1_2:+56194832 None:intergenic
TGTTTGTGAATTCAATCAAG+AGG 0.565218 1_2:-56190268 Msa0078570:CDS
TCATAGTTTAGAAAGTTTGG+AGG 0.565581 1_2:-56189806 Msa0078570:CDS
CTCCAAACCTACGTGTGAGA+TGG 0.566365 1_2:-56190355 Msa0078570:CDS
ATATCTCTTAAATGTTTCCA+AGG 0.567445 1_2:+56195165 None:intergenic
TACATCTTTCGCACTGAAGA+GGG 0.567635 1_2:-56196503 Msa0078570:CDS
CAACATTGCAGTTGATGCGC+CGG 0.567962 1_2:+56189605 None:intergenic
ATAGCAAAACAGTTTAAGCT+GGG 0.568094 1_2:-56188592 Msa0078570:CDS
CGATTAGCCATCTCACACGT+AGG 0.568224 1_2:+56190348 None:intergenic
AATCCATCTTCTTCGTCGAA+GGG 0.569125 1_2:+56196351 None:intergenic
CATTCAGGCTATATTTCCAA+AGG 0.569460 1_2:-56189536 Msa0078570:CDS
GAGTCCTACTGAAGAAATTG+AGG 0.569540 1_2:-56195011 Msa0078570:intron
GGCTTTGACAGATGTTCCAA+TGG 0.569738 1_2:-56190436 Msa0078570:CDS
AAGCCATCAAGGCTGCCAGC+AGG 0.570262 1_2:+56188544 None:intergenic
TAATAGTGCTGGAAGGTTGG+GGG 0.571266 1_2:+56189770 None:intergenic
GGGAAGCAGTACGAGCCCAG+TGG 0.572739 1_2:-56192602 Msa0078570:CDS
CCATCAATGACCTCATGCAA+AGG 0.572971 1_2:+56196599 None:intergenic
TTTCCTTGGAAAATAATCCA+AGG 0.574213 1_2:-56188681 Msa0078570:CDS
GTCAGATTCAAATAAAAGGA+AGG 0.575331 1_2:-56190130 Msa0078570:CDS
TGTAAATTGTAGTTCATCTG+AGG 0.576556 1_2:-56187271 Msa0078570:three_prime_UTR
CAATACGAGGACCTTTCTGA+CGG 0.576853 1_2:+56189638 None:intergenic
AGATTGCCGTAATTGCCAAA+AGG 0.576897 1_2:-56196099 Msa0078570:intron
AAAGCTGCCCTTGAGGCCGA+CGG 0.577930 1_2:+56187577 None:intergenic
TTGTGCTTTCTGGAAAGTCA+TGG 0.580340 1_2:-56189564 Msa0078570:CDS
ACGAGCAGTACATAAAATCT+GGG 0.580564 1_2:-56194801 Msa0078570:CDS
TCCATGTGGAAGCCAGTCAA+CGG 0.581948 1_2:+56192704 None:intergenic
CGAAGAAGATGGATTAACCA+TGG 0.582944 1_2:-56196343 Msa0078570:CDS
ACAATTGAACCCAGAGTGGT+AGG 0.583128 1_2:+56192761 None:intergenic
ATTCAGGCTATATTTCCAAA+GGG 0.585259 1_2:-56189535 Msa0078570:intron
AAAGTGCGAGAGCGGTTCAG+AGG 0.585788 1_2:-56196320 Msa0078570:CDS
TTAGCCTTAATAGTGCTGGA+AGG 0.587065 1_2:+56189763 None:intergenic
ATACATCTTTCGCACTGAAG+AGG 0.587392 1_2:-56196504 Msa0078570:CDS
TGCTTCTGTGACGGGTGAGA+AGG 0.589664 1_2:-56190019 Msa0078570:CDS
TCGAGTTTGTCATGAATACT+GGG 0.589756 1_2:-56187604 Msa0078570:CDS
GTCGTTGATAATGTATCTGT+TGG 0.590316 1_2:-56196971 Msa0078570:CDS
ATCTGAATCACAGTCAACTC+AGG 0.590865 1_2:-56196419 Msa0078570:CDS
AATTCGCTACTCGTGTTCAG+AGG 0.591578 1_2:-56195363 Msa0078570:CDS
TTTGCATGAGGTCATTGATG+GGG 0.593256 1_2:-56196597 Msa0078570:CDS
ATATAGTAACATGTACTGCA+TGG 0.596328 1_2:+56189379 None:intergenic
ATTCAGGGACAAAGAAGTCA+AGG 0.596866 1_2:-56195318 Msa0078570:CDS
TTCCTTGGAAAATAATCCAA+GGG 0.597322 1_2:-56188680 Msa0078570:CDS
ATGAATACTGGGACTTCCGT+CGG 0.597512 1_2:-56187593 Msa0078570:CDS
ACTTTCTAAACTATGACCGC+TGG 0.597676 1_2:+56189813 None:intergenic
CAGGAGCAATGTCAATAATG+AGG 0.597978 1_2:-56190460 Msa0078570:CDS
CAGACCACTTTAAATGGTGG+AGG 0.598583 1_2:-56187543 Msa0078570:CDS
GCTTGTGAAAGCTGCCCTTG+AGG 0.598677 1_2:+56187570 None:intergenic
TATCTTCTATATCACTACAC+AGG 0.598796 1_2:+56190067 None:intergenic
TATCTGGTGTTGTAGTGCCA+TGG 0.599195 1_2:-56194717 Msa0078570:CDS
GTCCAAATAATCAATCACCT+AGG 0.600691 1_2:+56187326 None:intergenic
CCAATTGAGTGATAGTGCAA+AGG 0.601500 1_2:-56196383 Msa0078570:CDS
CTGCCAGCAGGATGTAAAGG+AGG 0.603312 1_2:+56188556 None:intergenic
CAAGGAGGTTTCCATGAACG+TGG 0.606694 1_2:+56195421 None:intergenic
ATGAATCAGCACACACCCAC+CGG 0.607473 1_2:-56187498 Msa0078570:CDS
CTATAACCTCCATTCAGGCG+GGG 0.607843 1_2:+56187206 None:intergenic
TACAACACCAGATATATCAC+TGG 0.607854 1_2:+56194726 None:intergenic
TTACTGGTGCAGACTCAGCT+AGG 0.607999 1_2:-56189864 Msa0078570:CDS
GGGTGAGAAGGATGCTATTG+TGG 0.608424 1_2:-56190007 Msa0078570:CDS
AAGAGCGAGACCTCTTCAGT+GGG 0.608555 1_2:+56195630 None:intergenic
GGCACGTGTTGAGATGGAGC+GGG 0.608670 1_2:-56190865 Msa0078570:CDS
TCATGAAATTCTGAAAGGCA+AGG 0.609387 1_2:-56187055 Msa0078570:three_prime_UTR
CAGCAGGATGTAAAGGAGGA+AGG 0.610650 1_2:+56188560 None:intergenic
TTGTGGCTTCAACTGTGCTG+AGG 0.610989 1_2:-56192742 Msa0078570:CDS
TCATGATAAGCTATTGCTTG+GGG 0.611636 1_2:-56192631 Msa0078570:CDS
AGAAGCATCTGTCACAGGGA+TGG 0.613181 1_2:+56190035 None:intergenic
CCTGGAAGAATGAGACGAGT+CGG 0.613416 1_2:+56190479 None:intergenic
GCCTTCTGTGGAGAACATTG+AGG 0.614923 1_2:-56195056 Msa0078570:CDS
TTCCTCACCAGAAATAGTGA+AGG 0.614985 1_2:-56188506 Msa0078570:intron
TTGCCTCATGAAATTCTGAA+AGG 0.615001 1_2:-56187060 Msa0078570:three_prime_UTR
CAGCAAAGTAATCTCCCACT+GGG 0.615095 1_2:+56192587 None:intergenic
TAATTGGTCTTCTCTGCTCG+TGG 0.615742 1_2:+56189926 None:intergenic
AGATGCACTTGTCGTCGTCG+AGG 0.617027 1_2:+56196438 None:intergenic
TCACAGAAGCATCTGTCACA+GGG 0.618605 1_2:+56190031 None:intergenic
AAATAATCAATCACCTAGGG+TGG 0.619521 1_2:+56187330 None:intergenic
AACCATGGAAAGTGCGAGAG+CGG 0.620280 1_2:-56196328 Msa0078570:CDS
GATGTATATGACTCAAAACC+CGG 0.620565 1_2:+56196520 None:intergenic
AAAGATGTTTGTGGAAAAGA+CGG 0.621650 1_2:-56192534 Msa0078570:CDS
AATACGAGGACCTTTCTGAC+GGG 0.621688 1_2:+56189639 None:intergenic
TATGAAAAGAAAGATCTACT+GGG 0.623133 1_2:+56189893 None:intergenic
GGCCAGACCACTTTAAATGG+TGG 0.623703 1_2:-56187546 Msa0078570:CDS
TGGTACCTTAGAGCCTTCTG+TGG 0.624238 1_2:-56195068 Msa0078570:CDS
CACTATTAAGGCTAAGAACG+AGG 0.625779 1_2:-56189755 Msa0078570:CDS
TAGAGCTGTACCGGGAGCAG+GGG 0.626804 1_2:-56192671 Msa0078570:CDS
CTTGATTGAATTCACAAACA+GGG 0.626972 1_2:+56190271 None:intergenic
ACTGGAACAGAACCTAATGC+AGG 0.626995 1_2:-56195235 Msa0078570:CDS
ATGGAGCTGATCTGGAAACT+GGG 0.628046 1_2:-56194873 Msa0078570:CDS
AACCCAGAGTGGTAGGCTCG+AGG 0.628756 1_2:+56192768 None:intergenic
CAAGAGCGAGACCTCTTCAG+TGG 0.630677 1_2:+56195629 None:intergenic
TTTGACAGATGTTCCAATGG+TGG 0.632518 1_2:-56190433 Msa0078570:CDS
GAAAGGTCCTCGTATTGCAA+AGG 0.632795 1_2:-56189632 Msa0078570:CDS
AGCACAACTCCAAATTCCAA+AGG 0.636931 1_2:+56189580 None:intergenic
CGGCGGAGATAAAGCATACG+AGG 0.637145 1_2:+56190242 None:intergenic
TCATCTCCGTGTTGAGCTAG+CGG 0.637957 1_2:+56190222 None:intergenic
CGGACAACCTTTGCAATACG+AGG 0.638052 1_2:+56189625 None:intergenic
CTTGGAAAATAATCCAAGGG+AGG 0.638385 1_2:-56188677 Msa0078570:CDS
GAATCACAGTCAACTCAGGT+CGG 0.639711 1_2:-56196415 Msa0078570:CDS
CACATTCCTATATACAACCA+TGG 0.639807 1_2:+56194700 None:intergenic
AGGAGGTTTCCATGAACGTG+GGG 0.639849 1_2:+56195423 None:intergenic
TTGCCTTTCAGAATTTCATG+AGG 0.640614 1_2:+56187057 None:intergenic
TGGACTCTAGATGCATACGT+TGG 0.640798 1_2:-56186948 Msa0078570:three_prime_UTR
TTTAGGAAGACAAGGTCTCG+AGG 0.642351 1_2:+56196142 None:intergenic
CAAGCAAGCATATCTATCTG+TGG 0.642693 1_2:+56190713 None:intergenic
CGTTCCAGCTTCTACAAGAG+CGG 0.643705 1_2:-56189839 Msa0078570:CDS
AGGAAGACGCTGATTGTGAG+CGG 0.649584 1_2:-56196300 Msa0078570:CDS
ATGTTAGAATAAAGTCCCCA+GGG 0.650078 1_2:+56192793 None:intergenic
AAGAAGTTAGGGCCAGCCCA+AGG 0.652248 1_2:+56190553 None:intergenic
AGGACTCCTTTAGGAAGACA+AGG 0.655074 1_2:+56196134 None:intergenic
TATTGCTATAGAGCTGTACC+GGG 0.656325 1_2:-56192679 Msa0078570:CDS
TCTACAAGAGCGGATGCCAG+CGG 0.657634 1_2:-56189829 Msa0078570:CDS
AGGCACGTGTTGAGATGGAG+CGG 0.659804 1_2:-56190866 Msa0078570:CDS
TCTCCGCCGCTAGCTCAACA+CGG 0.662374 1_2:-56190228 Msa0078570:CDS
AAGGAGGTTTCCATGAACGT+GGG 0.663925 1_2:+56195422 None:intergenic
AGATATTTATGTATCGAACA+CGG 0.665293 1_2:+56189407 None:intergenic
AGTACTGCAACAGCTCCGGT+GGG 0.668090 1_2:+56187483 None:intergenic
GTCGTCGTCGAGGAACTCGT+CGG 0.668539 1_2:+56196448 None:intergenic
CTTCCTAAAGGAGTCCTCAG+AGG 0.671328 1_2:-56196128 Msa0078570:CDS
CTTGAGCCTGAATCTTCACG+AGG 0.673802 1_2:+56189982 None:intergenic
GGCAATCTGGACATCCTCTG+AGG 0.675158 1_2:+56196114 None:intergenic
GAGCAATGTCAATAATGAGG+CGG 0.676079 1_2:-56190457 Msa0078570:CDS
TCTCCGTGTTGAGCTAGCGG+CGG 0.678304 1_2:+56190225 None:intergenic
AGATTCAAATAAAAGGAAGG+AGG 0.681572 1_2:-56190127 Msa0078570:CDS
AGCAGTACATAAAATCTGGG+TGG 0.681653 1_2:-56194798 Msa0078570:CDS
TGGAGGTGGAAGTGATCAAG+GGG 0.683131 1_2:-56187526 Msa0078570:CDS
ATGAAAAGAAAGATCTACTG+GGG 0.686955 1_2:+56189894 None:intergenic
ACATTGAGGGTGAATACTGG+CGG 0.689031 1_2:-56195042 Msa0078570:CDS
GTTAACGGAAACATCTCTTG+TGG 0.691193 1_2:-56189673 Msa0078570:CDS
TGAGGGTGAATACTGGCGGA+TGG 0.693563 1_2:-56195038 Msa0078570:CDS
AGCCACAATTGAACCCAGAG+TGG 0.697023 1_2:+56192757 None:intergenic
TCTTACTGACAATAAGCCAG+CGG 0.719232 1_2:-56187406 Msa0078570:CDS
GTATATGACTCAAAACCCGG+TGG 0.733791 1_2:+56196523 None:intergenic
TCTATAGCAATATGTCCATG+TGG 0.743255 1_2:+56192690 None:intergenic
GGAGGTTTCCATGAACGTGG+GGG 0.743824 1_2:+56195424 None:intergenic
TAGGTGTGTCCAAAACCCTG+GGG 0.771641 1_2:-56192808 Msa0078570:CDS
AGAGCGAGACCTCTTCAGTG+GGG 0.777129 1_2:+56195631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATAATAATAATTTTT+CGG - chr1_2:56189553-56189572 Msa0078570:CDS 0.0%
!! TAATATTATAAAAATTAATT+TGG - chr1_2:56195843-56195862 Msa0078570:intron 0.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr1_2:56189602-56189621 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr1_2:56189603-56189622 None:intergenic 10.0%
!! TATAATTCAATGAATATAAA+TGG + chr1_2:56190621-56190640 None:intergenic 10.0%
!!! ATTAAAATCACTTAAATTTT+GGG + chr1_2:56191896-56191915 None:intergenic 10.0%
!!! AATTAAAATCACTTAAATTT+TGG + chr1_2:56191897-56191916 None:intergenic 10.0%
!! TAGAAAATAAAATTAGAAAA+AGG - chr1_2:56196757-56196776 Msa0078570:CDS 10.0%
!! AGAAAATAAAATTAGAAAAA+GGG - chr1_2:56196758-56196777 Msa0078570:CDS 10.0%
!! TAAATAAGCAAAAAATTAAA+GGG + chr1_2:56196798-56196817 None:intergenic 10.0%
!! TTAAATAAGCAAAAAATTAA+AGG + chr1_2:56196799-56196818 None:intergenic 10.0%
!!! GTACACTTTTATATTTATTA+CGG + chr1_2:56187716-56187735 None:intergenic 15.0%
!!! TGTTTATAATTTTTTTTCTC+AGG - chr1_2:56188400-56188419 Msa0078570:intron 15.0%
!! AAAATAATATGAAAAGGAAA+AGG - chr1_2:56188630-56188649 Msa0078570:CDS 15.0%
!!! ATTATCATTTTTGAAGTATT+CGG + chr1_2:56188798-56188817 None:intergenic 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr1_2:56189493-56189512 Msa0078570:intron 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr1_2:56189531-56189550 None:intergenic 15.0%
!! AATTAATAATTCATAGAAAC+TGG - chr1_2:56189614-56189633 Msa0078570:CDS 15.0%
!! TCTAAATTAATAAATTTCTC+CGG - chr1_2:56189887-56189906 Msa0078570:CDS 15.0%
!! AATCTATATTCTATATAGAT+AGG + chr1_2:56190348-56190367 None:intergenic 15.0%
!!! TTATATAGCATCTTTATTTT+AGG - chr1_2:56190538-56190557 Msa0078570:CDS 15.0%
!!! TTCATGTTAACTATTTTAAT+TGG - chr1_2:56191483-56191502 Msa0078570:intron 15.0%
!!! TTTCTAAAATATACATAAAC+TGG - chr1_2:56191575-56191594 Msa0078570:intron 15.0%
!!! TTCTAAAATATACATAAACT+GGG - chr1_2:56191576-56191595 Msa0078570:intron 15.0%
!!! ATTTAAGTGATTTTAATTGA+AGG - chr1_2:56191899-56191918 Msa0078570:intron 15.0%
!! AGTACAAATAAAATAATTCT+TGG + chr1_2:56192522-56192541 None:intergenic 15.0%
!!! ATTTTATTTGTACTGATTTA+TGG - chr1_2:56192528-56192547 Msa0078570:CDS 15.0%
!! TTTAATAAACTAATGAAGTT+AGG + chr1_2:56192731-56192750 None:intergenic 15.0%
!!! TAACTTCATTAGTTTATTAA+AGG - chr1_2:56192730-56192749 Msa0078570:CDS 15.0%
!! TTCTAATATTAAAACTTCTA+AGG - chr1_2:56192830-56192849 Msa0078570:CDS 15.0%
!! TCTAATATTAAAACTTCTAA+GGG - chr1_2:56192831-56192850 Msa0078570:CDS 15.0%
!!! TTAAAGTATTTACTTTTTGT+CGG - chr1_2:56194659-56194678 Msa0078570:intron 15.0%
!!! CAAGATTTTAAAACTATTTT+AGG - chr1_2:56195085-56195104 Msa0078570:CDS 15.0%
!! TTTGTAAAATAACTAAATCT+TGG - chr1_2:56195204-56195223 Msa0078570:CDS 15.0%
!!! ATAAAAAAAAGAGACTTTTT+AGG + chr1_2:56195869-56195888 None:intergenic 15.0%
!! TTAAAAATATGTTAAACAAC+TGG + chr1_2:56196165-56196184 None:intergenic 15.0%
!! ATATTACGAAAGAAAAAGTA+CGG - chr1_2:56187000-56187019 Msa0078570:three_prime_UTR 20.0%
!! CTTCTATCTATTTCATTTAT+AGG - chr1_2:56187136-56187155 Msa0078570:three_prime_UTR 20.0%
!! ATCTATTTCATTTATAGGTA+CGG - chr1_2:56187141-56187160 Msa0078570:three_prime_UTR 20.0%
!! TCCTTTGGTATTAATATTAT+TGG - chr1_2:56187854-56187873 Msa0078570:intron 20.0%
!! TAAATGTTAATATAGGCATA+TGG - chr1_2:56188049-56188068 Msa0078570:intron 20.0%
!!! ATTTCCAAGTTTTATGAATT+GGG - chr1_2:56188090-56188109 Msa0078570:intron 20.0%
!!! GTTTTAATATACAACAGTAA+CGG + chr1_2:56188121-56188140 None:intergenic 20.0%
!! TGTAGAAGTAAACATATAAA+TGG + chr1_2:56188347-56188366 None:intergenic 20.0%
!! ATTTATATGTTTACTTCTAC+AGG - chr1_2:56188346-56188365 Msa0078570:intron 20.0%
!! GGATTCAAAATAATATGAAA+AGG - chr1_2:56188624-56188643 Msa0078570:CDS 20.0%
!!! GCTAATACAACAATTTTAAA+TGG - chr1_2:56188833-56188852 Msa0078570:intron 20.0%
!! TATATCCAAAACAAAATGTA+AGG + chr1_2:56189014-56189033 None:intergenic 20.0%
!! AAACTCTTTGAATTAATACT+CGG - chr1_2:56189455-56189474 Msa0078570:intron 20.0%
!! CTCTATAAATTAATAAAGTC+AGG + chr1_2:56189914-56189933 None:intergenic 20.0%
!!! AATACAAAATAGTTTGCTTA+GGG - chr1_2:56190042-56190061 Msa0078570:CDS 20.0%
!!! TGCTTTATCTTTGTTTTTAA+TGG - chr1_2:56190564-56190583 Msa0078570:CDS 20.0%
!!! TGTTTTTAATGGTTTAATTG+TGG - chr1_2:56190575-56190594 Msa0078570:CDS 20.0%
!!! GTTTTTAATGGTTTAATTGT+GGG - chr1_2:56190576-56190595 Msa0078570:CDS 20.0%
!! ATTTATACTTCAATCTCAAT+AGG + chr1_2:56191613-56191632 None:intergenic 20.0%
!!! AAAAAGTTGTATTTTGTGTA+AGG - chr1_2:56191657-56191676 Msa0078570:intron 20.0%
!! AAGGTTAAATATAATTTCAG+TGG - chr1_2:56191845-56191864 Msa0078570:intron 20.0%
!! TGTTCAATTCAATTATGAAA+AGG - chr1_2:56192003-56192022 Msa0078570:intron 20.0%
!! GTTCAATTCAATTATGAAAA+GGG - chr1_2:56192004-56192023 Msa0078570:intron 20.0%
!! TTCAATTCAATTATGAAAAG+GGG - chr1_2:56192005-56192024 Msa0078570:intron 20.0%
!! CAAAGATGAAAATCATAATT+GGG + chr1_2:56192152-56192171 None:intergenic 20.0%
!! AGAAGTTCAATTTATAACTT+TGG - chr1_2:56192383-56192402 Msa0078570:intron 20.0%
!! AATCTATATGAACAAAGAAT+CGG + chr1_2:56192483-56192502 None:intergenic 20.0%
!!! ATTGAAAATTTCCTGATTTT+TGG - chr1_2:56192676-56192695 Msa0078570:CDS 20.0%
!! CTAATATTAAAACTTCTAAG+GGG - chr1_2:56192832-56192851 Msa0078570:CDS 20.0%
!! TTCAAAATCAATATTGAATG+CGG - chr1_2:56192964-56192983 Msa0078570:intron 20.0%
!! CATATTAAATTAATTGATGC+AGG - chr1_2:56194482-56194501 Msa0078570:intron 20.0%
!! TATTTACAGAATTTAGTGTT+AGG - chr1_2:56195517-56195536 Msa0078570:intron 20.0%
!! TTCTTTACAAAAGAAAAAGA+AGG - chr1_2:56195647-56195666 Msa0078570:CDS 20.0%
!! TCTTTACAAAAGAAAAAGAA+GGG - chr1_2:56195648-56195667 Msa0078570:CDS 20.0%
!! GAAGATATGTATTATAATTC+AGG + chr1_2:56195816-56195835 None:intergenic 20.0%
!! AGGTTGTATATGAAAAAATT+TGG + chr1_2:56195951-56195970 None:intergenic 20.0%
!!! TCATGTTTATTTTTTCATGA+AGG + chr1_2:56196036-56196055 None:intergenic 20.0%
!!! TGTTTAACATATTTTTAACC+TGG - chr1_2:56196167-56196186 Msa0078570:intron 20.0%
!! TATGTTAAACAAAACTAACT+CGG + chr1_2:56196229-56196248 None:intergenic 20.0%
!! TGAACCAAAATGAATAATAA+TGG + chr1_2:56196899-56196918 None:intergenic 20.0%
!!! CATTTTAGATTATTTTTTCC+TGG - chr1_2:56196953-56196972 Msa0078570:intron 20.0%
!! TGTTACTTCTTTATTTGTAC+AGG - chr1_2:56187267-56187286 Msa0078570:three_prime_UTR 25.0%
!! GTTACTTCTTTATTTGTACA+GGG - chr1_2:56187268-56187287 Msa0078570:three_prime_UTR 25.0%
! GCCAATAATATTAATACCAA+AGG + chr1_2:56187858-56187877 None:intergenic 25.0%
!! TCTTCCTTTGTCATTATTTT+CGG - chr1_2:56187920-56187939 Msa0078570:intron 25.0%
!!! CATTTCCAAGTTTTATGAAT+TGG - chr1_2:56188089-56188108 Msa0078570:intron 25.0%
!!! ACCTTAAGAGCTTATTTTAT+TGG - chr1_2:56188156-56188175 Msa0078570:intron 25.0%
!!! CCTTAAGAGCTTATTTTATT+GGG - chr1_2:56188157-56188176 Msa0078570:intron 25.0%
!! TCTCAAGGAAAAAAGTATAT+GGG - chr1_2:56188526-56188545 Msa0078570:CDS 25.0%
!! TTTTGTGAAGTTGAAACATT+TGG - chr1_2:56188710-56188729 Msa0078570:intron 25.0%
! TTTGTGAAGTTGAAACATTT+GGG - chr1_2:56188711-56188730 Msa0078570:intron 25.0%
! ATATCTCTTAAATGTTTCCA+AGG + chr1_2:56188759-56188778 None:intergenic 25.0%
! AAAATTGTTGTATTAGCACT+TGG + chr1_2:56188830-56188849 None:intergenic 25.0%
! CAAAACAAAATGTAAGGAAA+GGG + chr1_2:56189008-56189027 None:intergenic 25.0%
!!! TTTGTTTTGGATATACTTCT+AGG - chr1_2:56189019-56189038 Msa0078570:intron 25.0%
! GGAATTTAAATAACTTTGCA+AGG - chr1_2:56189144-56189163 Msa0078570:intron 25.0%
! TGGAAAATATCTCGTATTTA+TGG - chr1_2:56189337-56189356 Msa0078570:CDS 25.0%
!! GGATATCCCTTTATAATTTT+CGG - chr1_2:56189575-56189594 Msa0078570:CDS 25.0%
! TAAATTAATAAAGTCAGGAC+CGG + chr1_2:56189909-56189928 None:intergenic 25.0%
!!! CAATACAAAATAGTTTGCTT+AGG - chr1_2:56190041-56190060 Msa0078570:CDS 25.0%
! TAATGGAAAGAACAAAACTA+AGG + chr1_2:56190136-56190155 None:intergenic 25.0%
! TGTAATTCTTATTCTTGAGA+TGG + chr1_2:56190229-56190248 None:intergenic 25.0%
! AGTATAGACAACAAATACAA+AGG + chr1_2:56190280-56190299 None:intergenic 25.0%
!!! ATTTGTTGTCTATACTCTAT+AGG - chr1_2:56190284-56190303 Msa0078570:CDS 25.0%
! CAAGTTTACTTAGAAAAACA+GGG + chr1_2:56190471-56190490 None:intergenic 25.0%
! TCAAGTTTACTTAGAAAAAC+AGG + chr1_2:56190472-56190491 None:intergenic 25.0%
! TTCATTGAATTATATGCATC+TGG - chr1_2:56190627-56190646 Msa0078570:CDS 25.0%
! TCATTGAATTATATGCATCT+GGG - chr1_2:56190628-56190647 Msa0078570:CDS 25.0%
! AATTATCGATATCTTCACAT+TGG - chr1_2:56190917-56190936 Msa0078570:intron 25.0%
! ATTATCGATATCTTCACATT+GGG - chr1_2:56190918-56190937 Msa0078570:intron 25.0%
! ACACTTCAGATAATCTAAAA+TGG - chr1_2:56191364-56191383 Msa0078570:intron 25.0%
!!! CACTTAAATTTTGGGAAAAT+TGG + chr1_2:56191888-56191907 None:intergenic 25.0%
! TCAATTCAATTATGAAAAGG+GGG - chr1_2:56192006-56192025 Msa0078570:intron 25.0%
! CCAAAGATGAAAATCATAAT+TGG + chr1_2:56192153-56192172 None:intergenic 25.0%
!! CCAATTATGATTTTCATCTT+TGG - chr1_2:56192150-56192169 Msa0078570:intron 25.0%
!!! AATTTCCTGATTTTTGGAAA+AGG - chr1_2:56192682-56192701 Msa0078570:CDS 25.0%
! TTCTATTTGCATTGAATTTG+TGG - chr1_2:56192801-56192820 Msa0078570:CDS 25.0%
! AATGCGGAATGAAAATATAT+GGG - chr1_2:56192980-56192999 Msa0078570:intron 25.0%
!!! TTTTTTATGTCTTTTTCCCT+AGG - chr1_2:56193035-56193054 Msa0078570:intron 25.0%
!!! TTCTTCAAAGGCATTAAAAA+TGG - chr1_2:56193101-56193120 Msa0078570:intron 25.0%
! ATAACGAAAGAGGAAAAATT+TGG + chr1_2:56193271-56193290 None:intergenic 25.0%
! TGAACTAAATATTCTTGTTG+AGG - chr1_2:56193299-56193318 Msa0078570:CDS 25.0%
! AATTAAGTGCAGTTTATAGA+TGG - chr1_2:56193334-56193353 Msa0078570:intron 25.0%
! ATTAAGTGCAGTTTATAGAT+GGG - chr1_2:56193335-56193354 Msa0078570:intron 25.0%
! AGATAAAAAAACAGTATGTC+AGG - chr1_2:56193401-56193420 Msa0078570:intron 25.0%
!! CTAAGAAGTATGATATCTTT+AGG + chr1_2:56193744-56193763 None:intergenic 25.0%
! AGATGTCAGATTCAAATAAA+AGG - chr1_2:56193787-56193806 Msa0078570:intron 25.0%
! TATGAAAAGAAAGATCTACT+GGG + chr1_2:56194031-56194050 None:intergenic 25.0%
! ATATGAAAAGAAAGATCTAC+TGG + chr1_2:56194032-56194051 None:intergenic 25.0%
!! GTAGATCTTTCTTTTCATAT+AGG - chr1_2:56194032-56194051 Msa0078570:intron 25.0%
! AGATATTTATGTATCGAACA+CGG + chr1_2:56194517-56194536 None:intergenic 25.0%
! TGAAAAACCTTTCATATTTC+TGG - chr1_2:56194689-56194708 Msa0078570:CDS 25.0%
! ATTTACACCAGAAATATGAA+AGG + chr1_2:56194699-56194718 None:intergenic 25.0%
!! AATTTTTGCCCACATAATAA+GGG + chr1_2:56194777-56194796 None:intergenic 25.0%
!! AAATTTTTGCCCACATAATA+AGG + chr1_2:56194778-56194797 None:intergenic 25.0%
! ATCTTAAAAATTTAGTCGTG+AGG - chr1_2:56194966-56194985 Msa0078570:intron 25.0%
! AAAATTACCTTCACTATTTC+TGG + chr1_2:56195425-56195444 None:intergenic 25.0%
! CTTTACAAAAGAAAAAGAAG+GGG - chr1_2:56195649-56195668 Msa0078570:CDS 25.0%
!!! CTAAAACGAATTTTAAGTTG+AGG + chr1_2:56195927-56195946 None:intergenic 25.0%
!! CTCAACTTAAAATTCGTTTT+AGG - chr1_2:56195925-56195944 Msa0078570:intron 25.0%
!!! TTAATTTTGTTTATTCAGCC+TGG - chr1_2:56196113-56196132 Msa0078570:CDS 25.0%
!!! TATTTTTAACCTGGTGTTTT+AGG - chr1_2:56196176-56196195 Msa0078570:intron 25.0%
!! ATTTTTAACCTGGTGTTTTA+GGG - chr1_2:56196177-56196196 Msa0078570:intron 25.0%
! ACTGAAAAGCCTATTTAAAA+AGG - chr1_2:56196458-56196477 Msa0078570:CDS 25.0%
!! CATAGAGAATTTTTGCAATT+GGG + chr1_2:56196551-56196570 None:intergenic 25.0%
!! TCATAGAGAATTTTTGCAAT+TGG + chr1_2:56196552-56196571 None:intergenic 25.0%
! TTACATGTCAAGAAAAAGTT+AGG + chr1_2:56196635-56196654 None:intergenic 25.0%
!! TTATTTAAAGTGACAGTGTT+TGG - chr1_2:56196811-56196830 Msa0078570:intron 25.0%
CGAGCTATTTATGAATTTAG+CGG - chr1_2:56187100-56187119 Msa0078570:three_prime_UTR 30.0%
TAATAGATGTTTGTGTGTGT+CGG - chr1_2:56187219-56187238 Msa0078570:three_prime_UTR 30.0%
! ACGTGGATTCATTTAAGATT+TGG - chr1_2:56187662-56187681 Msa0078570:intron 30.0%
GTAACCGAAAATAATGACAA+AGG + chr1_2:56187927-56187946 None:intergenic 30.0%
ACATCCCAATTCATAAAACT+TGG + chr1_2:56188097-56188116 None:intergenic 30.0%
CCCAATAAAATAAGCTCTTA+AGG + chr1_2:56188160-56188179 None:intergenic 30.0%
GTAATTGACAATCGAAGTTT+CGG - chr1_2:56188198-56188217 Msa0078570:intron 30.0%
TAATTGACAATCGAAGTTTC+GGG - chr1_2:56188199-56188218 Msa0078570:intron 30.0%
!!! CATATACTTTTTTCCTTGAG+AGG + chr1_2:56188527-56188546 None:intergenic 30.0%
! CTCTCAAGGAAAAAAGTATA+TGG - chr1_2:56188525-56188544 Msa0078570:CDS 30.0%
! AAGGAAAAAAGTATATGGGA+GGG - chr1_2:56188530-56188549 Msa0078570:CDS 30.0%
AAACTTCAGAATCGTAATTC+AGG - chr1_2:56188587-56188606 Msa0078570:CDS 30.0%
AACTTCAGAATCGTAATTCA+GGG - chr1_2:56188588-56188607 Msa0078570:CDS 30.0%
ATGTTTCCAAGGTAAATTCT+GGG + chr1_2:56188748-56188767 None:intergenic 30.0%
AATGTTTCCAAGGTAAATTC+TGG + chr1_2:56188749-56188768 None:intergenic 30.0%
CCAAAACAAAATGTAAGGAA+AGG + chr1_2:56189009-56189028 None:intergenic 30.0%
!! CCTTTCCTTACATTTTGTTT+TGG - chr1_2:56189006-56189025 Msa0078570:intron 30.0%
ATATACTTCTAGGTGCTTTA+TGG - chr1_2:56189029-56189048 Msa0078570:intron 30.0%
TATGAAACCAGTGATATATC+TGG - chr1_2:56189188-56189207 Msa0078570:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG + chr1_2:56189584-56189603 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr1_2:56189676-56189695 None:intergenic 30.0%
ACTATTGTGTTCATATGCAT+TGG + chr1_2:56189720-56189739 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - chr1_2:56189794-56189813 Msa0078570:CDS 30.0%
ACTGTACATACCAAACAAAA+AGG + chr1_2:56189807-56189826 None:intergenic 30.0%
TTTGTATTGTTAATGTGCCA+CGG + chr1_2:56190030-56190049 None:intergenic 30.0%
GTGTGTTTATAGTGAGAATA+AGG - chr1_2:56190420-56190439 Msa0078570:CDS 30.0%
!!! GTTTGTTTTACTTGCTAGAT+AGG - chr1_2:56190878-56190897 Msa0078570:intron 30.0%
ATCTGCTCAGAAATGAAATA+TGG + chr1_2:56190991-56191010 None:intergenic 30.0%
CTAAAATGGAAAGATGTTTG+TGG - chr1_2:56191378-56191397 Msa0078570:intron 30.0%
AAAGATGTTTGTGGAAAAGA+CGG - chr1_2:56191387-56191406 Msa0078570:intron 30.0%
CTCCATATAATACTGTAGAA+CGG - chr1_2:56191445-56191464 Msa0078570:intron 30.0%
TCCATATAATACTGTAGAAC+GGG - chr1_2:56191446-56191465 Msa0078570:intron 30.0%
ATTAGAAGATAGAAGCAGTT+GGG + chr1_2:56191637-56191656 None:intergenic 30.0%
TATTAGAAGATAGAAGCAGT+TGG + chr1_2:56191638-56191657 None:intergenic 30.0%
! TGTATTTTGTGTAAGGTAAG+TGG - chr1_2:56191664-56191683 Msa0078570:intron 30.0%
! GTATTTTGTGTAAGGTAAGT+GGG - chr1_2:56191665-56191684 Msa0078570:intron 30.0%
CTGTTATCACCTAACTATTT+AGG - chr1_2:56191764-56191783 Msa0078570:intron 30.0%
TCTCAAAAGCCTAAATAGTT+AGG + chr1_2:56191776-56191795 None:intergenic 30.0%
!!! ATTTAGGCTTTTGAGATAGT+TGG - chr1_2:56191780-56191799 Msa0078570:intron 30.0%
CCTAAAGAAATCTTGAATGA+AGG + chr1_2:56191953-56191972 None:intergenic 30.0%
CCTTCATTCAAGATTTCTTT+AGG - chr1_2:56191950-56191969 Msa0078570:intron 30.0%
TTCAACTTCATTGGAAGTAA+GGG - chr1_2:56192244-56192263 Msa0078570:intron 30.0%
CAGAAAAATGGTTAGAAGTT+TGG + chr1_2:56192282-56192301 None:intergenic 30.0%
!! TTCTAACCATTTTTCTGTTG+AGG - chr1_2:56192285-56192304 Msa0078570:intron 30.0%
TTGGAAGATATTCTTGAATC+AGG - chr1_2:56192402-56192421 Msa0078570:intron 30.0%
ACAGCAAATGTTAACTACAA+AGG - chr1_2:56192430-56192449 Msa0078570:intron 30.0%
TGTTAACTACAAAGGAATGA+AGG - chr1_2:56192438-56192457 Msa0078570:intron 30.0%
! TAGTTTTCACTTGTCTTCAT+TGG - chr1_2:56192645-56192664 Msa0078570:CDS 30.0%
! AGTTTTCACTTGTCTTCATT+GGG - chr1_2:56192646-56192665 Msa0078570:CDS 30.0%
! ATGATCCTTTTCCAAAAATC+AGG + chr1_2:56192690-56192709 None:intergenic 30.0%
!!! GGATCATTTATTTTACTCGA+TGG - chr1_2:56192703-56192722 Msa0078570:CDS 30.0%
!! TGATTTTGAAAGTGAGAAGT+CGG + chr1_2:56192954-56192973 None:intergenic 30.0%
GAATGCGGAATGAAAATATA+TGG - chr1_2:56192979-56192998 Msa0078570:intron 30.0%
AAATATTCTTGTTGAGGCAT+TGG - chr1_2:56193305-56193324 Msa0078570:CDS 30.0%
TACTGAGACATAAGAAGTTA+GGG + chr1_2:56193382-56193401 None:intergenic 30.0%
!! CGTAAGATCTTTGCTATTAA+AGG - chr1_2:56193594-56193613 Msa0078570:intron 30.0%
CTTGATTGAATTCACAAACA+GGG + chr1_2:56193653-56193672 None:intergenic 30.0%
TCTTGATTGAATTCACAAAC+AGG + chr1_2:56193654-56193673 None:intergenic 30.0%
TGTTTGTGAATTCAATCAAG+AGG - chr1_2:56193653-56193672 Msa0078570:intron 30.0%
GTCAGATTCAAATAAAAGGA+AGG - chr1_2:56193791-56193810 Msa0078570:intron 30.0%
AGATTCAAATAAAAGGAAGG+AGG - chr1_2:56193794-56193813 Msa0078570:intron 30.0%
TATCTTCTATATCACTACAC+AGG + chr1_2:56193857-56193876 None:intergenic 30.0%
ATGAAAAGAAAGATCTACTG+GGG + chr1_2:56194030-56194049 None:intergenic 30.0%
! TCTTTTCATATAGGTCTTAC+TGG - chr1_2:56194041-56194060 Msa0078570:intron 30.0%
TCATAGTTTAGAAAGTTTGG+AGG - chr1_2:56194115-56194134 Msa0078570:intron 30.0%
GATAATCATGAGAAGTTTGA+TGG - chr1_2:56194188-56194207 Msa0078570:intron 30.0%
ATTGTCTGTTACATTAGAAG+TGG + chr1_2:56194219-56194238 None:intergenic 30.0%
ATTCAGGCTATATTTCCAAA+GGG - chr1_2:56194386-56194405 Msa0078570:intron 30.0%
ATATAGTAACATGTACTGCA+TGG + chr1_2:56194545-56194564 None:intergenic 30.0%
ATTTCAGAAATTCTTGATGC+TGG - chr1_2:56194563-56194582 Msa0078570:intron 30.0%
! ATTTTTGCCCACATAATAAG+GGG + chr1_2:56194776-56194795 None:intergenic 30.0%
TTATGTGGGCAAAAATTTGA+TGG - chr1_2:56194780-56194799 Msa0078570:CDS 30.0%
AAAATTTGATGGAGGATTCT+TGG - chr1_2:56194791-56194810 Msa0078570:CDS 30.0%
AAAGCCATGAACTAGAAAAT+AGG + chr1_2:56194821-56194840 None:intergenic 30.0%
CAAAAAAGTCTCTAGTCATA+CGG + chr1_2:56194884-56194903 None:intergenic 30.0%
TTAAGATTAGATGCCCATAA+TGG + chr1_2:56194953-56194972 None:intergenic 30.0%
! AGACACGTGTTTAACTTATT+GGG - chr1_2:56195036-56195055 Msa0078570:CDS 30.0%
!! AATCTTGATTTTGATCTGAC+AGG + chr1_2:56195072-56195091 None:intergenic 30.0%
AAATTACTTTGCACATTGAG+AGG - chr1_2:56195130-56195149 Msa0078570:CDS 30.0%
! ATTATTTTCCAAGGAAACCT+GGG + chr1_2:56195237-56195256 None:intergenic 30.0%
TTTCCTTGGAAAATAATCCA+AGG - chr1_2:56195240-56195259 Msa0078570:CDS 30.0%
TTCCTTGGAAAATAATCCAA+GGG - chr1_2:56195241-56195260 Msa0078570:CDS 30.0%
ATAGCAAAACAGTTTAAGCT+GGG - chr1_2:56195329-56195348 Msa0078570:CDS 30.0%
! ATTTTCATAATGTGCAACTC+AGG - chr1_2:56195552-56195571 Msa0078570:intron 30.0%
! TTTTCAGTAGATCACAAAAC+AGG + chr1_2:56195588-56195607 None:intergenic 30.0%
! GTTTTGTGATCTACTGAAAA+TGG - chr1_2:56195588-56195607 Msa0078570:intron 30.0%
ACTCGGATTAAAAAGAAGAA+AGG + chr1_2:56196212-56196231 None:intergenic 30.0%
!!! CATAGTTTTGATAGCTTTCA+AGG - chr1_2:56196245-56196264 Msa0078570:intron 30.0%
CTTATCTGCTTTCTTTAATC+AGG - chr1_2:56196272-56196291 Msa0078570:intron 30.0%
TTTCTTTAATCAGGCTATTG+AGG - chr1_2:56196281-56196300 Msa0078570:intron 30.0%
TCCAAATAATCAATCACCTA+GGG + chr1_2:56196597-56196616 None:intergenic 30.0%
TGTAAATTGTAGTTCATCTG+AGG - chr1_2:56196650-56196669 Msa0078570:intron 30.0%
GAGGTTATAGAGAAAGAAAA+AGG - chr1_2:56196728-56196747 Msa0078570:intron 30.0%
CCAAAATGAATAATAATGGC+CGG + chr1_2:56196895-56196914 None:intergenic 30.0%
CACATCTTGAAACAACAATT+AGG - chr1_2:56196928-56196947 Msa0078570:intron 30.0%
!! GTCGTTGATAATGTATCTGT+TGG - chr1_2:56186950-56186969 Msa0078570:three_prime_UTR 35.0%
ACAGAGAGTTAGTTCAGTTA+AGG + chr1_2:56187061-56187080 None:intergenic 35.0%
! CTTTATTTGTACAGGGAAGA+CGG - chr1_2:56187275-56187294 Msa0078570:three_prime_UTR 35.0%
GATGTATATGACTCAAAACC+CGG + chr1_2:56187404-56187423 None:intergenic 35.0%
!! AAAGCACCTTTTGGCAATTA+CGG + chr1_2:56187831-56187850 None:intergenic 35.0%
ACAATACGACAGATTCCATA+TGG + chr1_2:56188476-56188495 None:intergenic 35.0%
! CAAGGAAAAAAGTATATGGG+AGG - chr1_2:56188529-56188548 Msa0078570:CDS 35.0%
AAGGAGAAGATACACAAGAA+TGG - chr1_2:56188649-56188668 Msa0078570:CDS 35.0%
AGGAGAAGATACACAAGAAT+GGG - chr1_2:56188650-56188669 Msa0078570:CDS 35.0%
ACTTCACAAAATCCTGCATT+AGG + chr1_2:56188701-56188720 None:intergenic 35.0%
TACGAGCAGTACATAAAATC+TGG - chr1_2:56189119-56189138 Msa0078570:intron 35.0%
ACGAGCAGTACATAAAATCT+GGG - chr1_2:56189120-56189139 Msa0078570:intron 35.0%
AATAACTTTGCAAGGTTACC+AGG - chr1_2:56189152-56189171 Msa0078570:intron 35.0%
TACAACACCAGATATATCAC+TGG + chr1_2:56189198-56189217 None:intergenic 35.0%
CACATTCCTATATACAACCA+TGG + chr1_2:56189224-56189243 None:intergenic 35.0%
! TGTGCTTTTCCTCATTTTGT+TGG - chr1_2:56189240-56189259 Msa0078570:intron 35.0%
! GTGCTTTTCCTCATTTTGTT+GGG - chr1_2:56189241-56189260 Msa0078570:intron 35.0%
! TTTCCTCATTTTGTTGGGTA+AGG - chr1_2:56189246-56189265 Msa0078570:intron 35.0%
! AATACGAGATATTTTCCAGC+AGG + chr1_2:56189335-56189354 None:intergenic 35.0%
! TTTTTACATTGGCCCAAGTT+GGG + chr1_2:56189520-56189539 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+TGG + chr1_2:56189521-56189540 None:intergenic 35.0%
CTTGGGACCGAAAATTATAA+AGG + chr1_2:56189585-56189604 None:intergenic 35.0%
CTAATTTACATTGAGTCCCA+AGG - chr1_2:56189742-56189761 Msa0078570:CDS 35.0%
ATATGCAATTGATTGTGCTC+TGG - chr1_2:56190184-56190203 Msa0078570:CDS 35.0%
TATGCAATTGATTGTGCTCT+GGG - chr1_2:56190185-56190204 Msa0078570:CDS 35.0%
ATACAAACACAATGTGCACA+TGG + chr1_2:56190323-56190342 None:intergenic 35.0%
ACTTAGAAAAACAGGGCAAA+AGG + chr1_2:56190464-56190483 None:intergenic 35.0%
! ATTTGCATGCATCTTTTGCA+GGG + chr1_2:56190678-56190697 None:intergenic 35.0%
! AATTTGCATGCATCTTTTGC+AGG + chr1_2:56190679-56190698 None:intergenic 35.0%
TGCAAAAGATGCATGCAAAT+TGG - chr1_2:56190678-56190697 Msa0078570:CDS 35.0%
GGTTGTTCTTCAAAAAGTTC+AGG + chr1_2:56190727-56190746 None:intergenic 35.0%
CAAACAAGACGATAAACAAG+AGG + chr1_2:56190863-56190882 None:intergenic 35.0%
AAATGAAATATGGACAGGTG+GGG + chr1_2:56190981-56191000 None:intergenic 35.0%
GAAATGAAATATGGACAGGT+GGG + chr1_2:56190982-56191001 None:intergenic 35.0%
AGAAATGAAATATGGACAGG+TGG + chr1_2:56190983-56191002 None:intergenic 35.0%
CTCAGAAATGAAATATGGAC+AGG + chr1_2:56190986-56191005 None:intergenic 35.0%
ACTTTCTAACTTTCGCTTAC+AGG - chr1_2:56191041-56191060 Msa0078570:intron 35.0%
CCTTTGGACTTAAGAATAGA+AGG + chr1_2:56191081-56191100 None:intergenic 35.0%
CCTTCTATTCTTAAGTCCAA+AGG - chr1_2:56191078-56191097 Msa0078570:intron 35.0%
! TTTTGGACACACCTATAAAC+TGG + chr1_2:56191108-56191127 None:intergenic 35.0%
ATGTTAGAATAAAGTCCCCA+GGG + chr1_2:56191131-56191150 None:intergenic 35.0%
AATGTTAGAATAAAGTCCCC+AGG + chr1_2:56191132-56191151 None:intergenic 35.0%
TCTATAGCAATATGTCCATG+TGG + chr1_2:56191234-56191253 None:intergenic 35.0%
ATATTGCTATAGAGCTGTAC+CGG - chr1_2:56191241-56191260 Msa0078570:intron 35.0%
TCTCATGATAAGCTATTGCT+TGG - chr1_2:56191288-56191307 Msa0078570:intron 35.0%
CTCATGATAAGCTATTGCTT+GGG - chr1_2:56191289-56191308 Msa0078570:intron 35.0%
TCATGATAAGCTATTGCTTG+GGG - chr1_2:56191290-56191309 Msa0078570:intron 35.0%
!!! TCTTTTGGCAAAAGCATTCA+AGG - chr1_2:56191410-56191429 Msa0078570:intron 35.0%
TCCCGTTCTACAGTATTATA+TGG + chr1_2:56191450-56191469 None:intergenic 35.0%
TTAGAAGATAGAAGCAGTTG+GGG + chr1_2:56191636-56191655 None:intergenic 35.0%
GTTCAACTTCATTGGAAGTA+AGG - chr1_2:56192243-56192262 Msa0078570:intron 35.0%
TCAAAGCCTCAACAGAAAAA+TGG + chr1_2:56192294-56192313 None:intergenic 35.0%
! CTGCTTGATAAGTTGAAGTT+AGG - chr1_2:56192318-56192337 Msa0078570:intron 35.0%
! CTTGATAAGTTGAAGTTAGG+TGG - chr1_2:56192321-56192340 Msa0078570:intron 35.0%
GCTTAGAGTAAAACCATTCT+TGG + chr1_2:56192351-56192370 None:intergenic 35.0%
TAACTACAAAGGAATGAAGG+TGG - chr1_2:56192441-56192460 Msa0078570:intron 35.0%
! TTGATGACTAACACAGATTG+TGG + chr1_2:56192620-56192639 None:intergenic 35.0%
! TCTTTTTCTTGGCAGTTTGA+GGG + chr1_2:56192926-56192945 None:intergenic 35.0%
! ATCTTTTTCTTGGCAGTTTG+AGG + chr1_2:56192927-56192946 None:intergenic 35.0%
! AGTCGGAATCATCTTTTTCT+TGG + chr1_2:56192937-56192956 None:intergenic 35.0%
ATTTCTCTGCAGTTCTTCAA+AGG - chr1_2:56193089-56193108 Msa0078570:intron 35.0%
! TTTTGATGCTACCAGTGAAA+GGG - chr1_2:56193131-56193150 Msa0078570:intron 35.0%
CACTGATATCATAACGAAAG+AGG + chr1_2:56193281-56193300 None:intergenic 35.0%
CTACTGAGACATAAGAAGTT+AGG + chr1_2:56193383-56193402 None:intergenic 35.0%
AGCAAATTCTGCAAATAGCA+AGG - chr1_2:56193515-56193534 Msa0078570:intron 35.0%
CGGTCATAGTTTAGAAAGTT+TGG - chr1_2:56194112-56194131 Msa0078570:intron 35.0%
!! AATGTTGAGCCTTTGGAATT+TGG - chr1_2:56194332-56194351 Msa0078570:intron 35.0%
CATTCAGGCTATATTTCCAA+AGG - chr1_2:56194385-56194404 Msa0078570:intron 35.0%
ACAAGACATGCAAATCATTG+AGG + chr1_2:56194426-56194445 None:intergenic 35.0%
!! GGTGAAAGTACCATAAATAG+AGG + chr1_2:56194599-56194618 None:intergenic 35.0%
GATTGCAGTTAAGCATAAGA+AGG + chr1_2:56194620-56194639 None:intergenic 35.0%
CACAACGGGATTTAAATTCA+CGG + chr1_2:56194732-56194751 None:intergenic 35.0%
!! TCGACAAGATTTTAGCACAA+CGG + chr1_2:56194747-56194766 None:intergenic 35.0%
AGGTTTACCCCTTATTATGT+GGG - chr1_2:56194766-56194785 Msa0078570:CDS 35.0%
!!! CTCACCTATTTTCTAGTTCA+TGG - chr1_2:56194814-56194833 Msa0078570:CDS 35.0%
! CAGACACGTGTTTAACTTAT+TGG - chr1_2:56195035-56195054 Msa0078570:CDS 35.0%
! GATTATTTTCCAAGGAAACC+TGG + chr1_2:56195238-56195257 None:intergenic 35.0%
ATATGTCAGCAACAAAATGC+TGG - chr1_2:56195276-56195295 Msa0078570:CDS 35.0%
TATGTCAGCAACAAAATGCT+GGG - chr1_2:56195277-56195296 Msa0078570:CDS 35.0%
GATAGCAAAACAGTTTAAGC+TGG - chr1_2:56195328-56195347 Msa0078570:CDS 35.0%
CAAACATTTCAAAGCCATCA+AGG + chr1_2:56195391-56195410 None:intergenic 35.0%
!! CTTGATGGCTTTGAAATGTT+TGG - chr1_2:56195389-56195408 Msa0078570:CDS 35.0%
! AAGCAAGTAAAGCATTTGCT+CGG - chr1_2:56195685-56195704 Msa0078570:CDS 35.0%
TCGAGTTTGTCATGAATACT+GGG - chr1_2:56196317-56196336 Msa0078570:CDS 35.0%
CCTATTTAAAAAGGCGAATG+CGG - chr1_2:56196467-56196486 Msa0078570:CDS 35.0%
AAATAATCAATCACCTAGGG+TGG + chr1_2:56196594-56196613 None:intergenic 35.0%
ACCCTAGGTGATTGATTATT+TGG - chr1_2:56196593-56196612 Msa0078570:CDS 35.0%
GTCCAAATAATCAATCACCT+AGG + chr1_2:56196598-56196617 None:intergenic 35.0%
AAAAACCCAAAGACTAAGGT+TGG + chr1_2:56196694-56196713 None:intergenic 35.0%
TTTCTCTATAACCTCCATTC+AGG + chr1_2:56196723-56196742 None:intergenic 35.0%
TTAAAGTGACAGTGTTTGGA+TGG - chr1_2:56196815-56196834 Msa0078570:intron 35.0%
! AAAGTTTCAAAGCGTCACTT+TGG - chr1_2:56196838-56196857 Msa0078570:intron 35.0%
TTGCCTCATGAAATTCTGAA+AGG - chr1_2:56196861-56196880 Msa0078570:intron 35.0%
TTGCCTTTCAGAATTTCATG+AGG + chr1_2:56196867-56196886 None:intergenic 35.0%
! TCATGAAATTCTGAAAGGCA+AGG - chr1_2:56196866-56196885 Msa0078570:intron 35.0%
! CCGGCCATTATTATTCATTT+TGG - chr1_2:56196892-56196911 Msa0078570:intron 35.0%
AACTCTCTGTCTGTTCAGAT+TGG - chr1_2:56187071-56187090 Msa0078570:three_prime_UTR 40.0%
CATCAATGACCTCATGCAAA+GGG + chr1_2:56187324-56187343 None:intergenic 40.0%
CTTTGCATGAGGTCATTGAT+GGG - chr1_2:56187323-56187342 Msa0078570:three_prime_UTR 40.0%
TTTGCATGAGGTCATTGATG+GGG - chr1_2:56187324-56187343 Msa0078570:three_prime_UTR 40.0%
ATACATCTTTCGCACTGAAG+AGG - chr1_2:56187417-56187436 Msa0078570:CDS 40.0%
TACATCTTTCGCACTGAAGA+GGG - chr1_2:56187418-56187437 Msa0078570:CDS 40.0%
ATCTGAATCACAGTCAACTC+AGG - chr1_2:56187502-56187521 Msa0078570:CDS 40.0%
CCTTTGCACTATCACTCAAT+TGG + chr1_2:56187541-56187560 None:intergenic 40.0%
! CCAATTGAGTGATAGTGCAA+AGG - chr1_2:56187538-56187557 Msa0078570:CDS 40.0%
AATCCATCTTCTTCGTCGAA+GGG + chr1_2:56187573-56187592 None:intergenic 40.0%
TAATCCATCTTCTTCGTCGA+AGG + chr1_2:56187574-56187593 None:intergenic 40.0%
!! CGAAGAAGATGGATTAACCA+TGG - chr1_2:56187578-56187597 Msa0078570:CDS 40.0%
! ATGATCAAGTTAGTCTCACG+TGG - chr1_2:56187645-56187664 Msa0078570:intron 40.0%
! TTTTGGCAATTACGGCAATC+TGG + chr1_2:56187823-56187842 None:intergenic 40.0%
AGATTGCCGTAATTGCCAAA+AGG - chr1_2:56187822-56187841 Msa0078570:intron 40.0%
!! AAAGGAAGCAAAGCACCTTT+TGG + chr1_2:56187840-56187859 None:intergenic 40.0%
!! AAAAGGTGCTTTGCTTCCTT+TGG - chr1_2:56187839-56187858 Msa0078570:intron 40.0%
AGGAAGATTGAAGTTGTGAC+AGG + chr1_2:56187907-56187926 None:intergenic 40.0%
!! ACAGGAGCATTCTCAATTTG+TGG + chr1_2:56188264-56188283 None:intergenic 40.0%
!!! CTTTTTTCCTTGAGAGGACA+AGG + chr1_2:56188521-56188540 None:intergenic 40.0%
ATTCAGGGACAAAGAAGTCA+AGG - chr1_2:56188603-56188622 Msa0078570:CDS 40.0%
AAGATACACAAGAATGGGAG+TGG - chr1_2:56188655-56188674 Msa0078570:CDS 40.0%
ACAAGAATGGGAGTGGATAA+TGG - chr1_2:56188662-56188681 Msa0078570:CDS 40.0%
! GAAACATTTGGGTTTGAACC+TGG - chr1_2:56188722-56188741 Msa0078570:intron 40.0%
GAGATATGCAGACGAGTTTA+AGG - chr1_2:56188772-56188791 Msa0078570:intron 40.0%
AGAACATTGAGGGTGAATAC+TGG - chr1_2:56188876-56188895 Msa0078570:intron 40.0%
GAGTCCTACTGAAGAAATTG+AGG - chr1_2:56188910-56188929 Msa0078570:intron 40.0%
GTGACCTCAATTTCTTCAGT+AGG + chr1_2:56188917-56188936 None:intergenic 40.0%
AAGGAAAGGGTCATGTACAA+AGG + chr1_2:56188995-56189014 None:intergenic 40.0%
! ATCTGGAAACTGGGAGTTTT+GGG - chr1_2:56189057-56189076 Msa0078570:intron 40.0%
! GAAACTTGACTAGACTTGCT+AGG + chr1_2:56189092-56189111 None:intergenic 40.0%
AGCAGTACATAAAATCTGGG+TGG - chr1_2:56189123-56189142 Msa0078570:intron 40.0%
GTAGTGCCATGGTTGTATAT+AGG - chr1_2:56189215-56189234 Msa0078570:intron 40.0%
TGTCCTTACCCAACAAAATG+AGG + chr1_2:56189252-56189271 None:intergenic 40.0%
!!! ATGTTTTTTATTTGCCGCCG+TGG - chr1_2:56190010-56190029 Msa0078570:CDS 40.0%
ATATGCAATACACCCTTCGA+GGG - chr1_2:56190379-56190398 Msa0078570:CDS 40.0%
CAAAAGGATGTCAACCAGAT+GGG + chr1_2:56190448-56190467 None:intergenic 40.0%
AGATGCATGCAAATTGGAAG+AGG - chr1_2:56190684-56190703 Msa0078570:CDS 40.0%
TTCAGGTAACTGCTTTCTCA+TGG + chr1_2:56190710-56190729 None:intergenic 40.0%
GATCAAATGAACTTGTGCAG+TGG + chr1_2:56190787-56190806 None:intergenic 40.0%
CTGCACAAGTTCATTTGATC+AGG - chr1_2:56190787-56190806 Msa0078570:CDS 40.0%
TTGATCAGGATGTTGCAGAT+AGG - chr1_2:56190801-56190820 Msa0078570:CDS 40.0%
ATCGATATCTTCACATTGGG+TGG - chr1_2:56190921-56190940 Msa0078570:intron 40.0%
TCGATATCTTCACATTGGGT+GGG - chr1_2:56190922-56190941 Msa0078570:intron 40.0%
TATTGCTATAGAGCTGTACC+GGG - chr1_2:56191242-56191261 Msa0078570:intron 40.0%
! TTGTGGAAAAGACGGTCTTT+TGG - chr1_2:56191395-56191414 Msa0078570:intron 40.0%
GTAGAACGGGATAACGTTTA+TGG - chr1_2:56191459-56191478 Msa0078570:intron 40.0%
TAACACATCCCCTCACTTAA+GGG + chr1_2:56191723-56191742 None:intergenic 40.0%
GCTTGAACTGTAAACAACAC+AGG - chr1_2:56191972-56191991 Msa0078570:intron 40.0%
TTATGAAAAGGGGGTTACTC+AGG - chr1_2:56192015-56192034 Msa0078570:intron 40.0%
!! GCTGACTTTTCTTAAAGCCT+TGG - chr1_2:56192112-56192131 Msa0078570:intron 40.0%
! TTCTTAAAGCCTTGGCTCTT+AGG - chr1_2:56192120-56192139 Msa0078570:intron 40.0%
ATAAGCCTGTTTACTGTGTG+CGG - chr1_2:56192220-56192239 Msa0078570:intron 40.0%
CAGAATGGACAATAAGGAAC+AGG + chr1_2:56192568-56192587 None:intergenic 40.0%
AGGCTTCAGAATGGACAATA+AGG + chr1_2:56192574-56192593 None:intergenic 40.0%
TCAAATGACCAACCAATGCA+AGG + chr1_2:56192594-56192613 None:intergenic 40.0%
!! TGCATTGGTTGGTCATTTGA+AGG - chr1_2:56192594-56192613 Msa0078570:CDS 40.0%
!! GTTTTGATGCTACCAGTGAA+AGG - chr1_2:56193130-56193149 Msa0078570:intron 40.0%
CAAGCAAGCATATCTATCTG+TGG + chr1_2:56193211-56193230 None:intergenic 40.0%
CACAGATAGATATGCTTGCT+TGG - chr1_2:56193209-56193228 Msa0078570:CDS 40.0%
AGCAATTGTGTTCATGCTCT+TGG - chr1_2:56193241-56193260 Msa0078570:CDS 40.0%
!! ATTCTTGTTGAGGCATTGGA+AGG - chr1_2:56193309-56193328 Msa0078570:CDS 40.0%
AGATGGGCAAAATTAGACCT+TGG - chr1_2:56193351-56193370 Msa0078570:intron 40.0%
GATGGGCAAAATTAGACCTT+GGG - chr1_2:56193352-56193371 Msa0078570:intron 40.0%
CTCATTATTGACATTGCTCC+TGG + chr1_2:56193463-56193482 None:intergenic 40.0%
CAGGAGCAATGTCAATAATG+AGG - chr1_2:56193461-56193480 Msa0078570:intron 40.0%
GAGCAATGTCAATAATGAGG+CGG - chr1_2:56193464-56193483 Msa0078570:intron 40.0%
TTTGACAGATGTTCCAATGG+TGG - chr1_2:56193488-56193507 Msa0078570:intron 40.0%
! GAATTTGCTTGATCCACCAT+TGG + chr1_2:56193504-56193523 None:intergenic 40.0%
AATTCACAAACAGGGACACT+CGG + chr1_2:56193645-56193664 None:intergenic 40.0%
!! GCTTTATTTCTACAACCAGC+AGG + chr1_2:56193831-56193850 None:intergenic 40.0%
! ACTGGGGTAGAAGGTATAAT+TGG + chr1_2:56194014-56194033 None:intergenic 40.0%
ACTTTCTAAACTATGACCGC+TGG + chr1_2:56194111-56194130 None:intergenic 40.0%
! TTAATAGTGCTGGAAGGTTG+GGG + chr1_2:56194155-56194174 None:intergenic 40.0%
! CTTAATAGTGCTGGAAGGTT+GGG + chr1_2:56194156-56194175 None:intergenic 40.0%
!! TTAGCCTTAATAGTGCTGGA+AGG + chr1_2:56194161-56194180 None:intergenic 40.0%
!! GTTCTTAGCCTTAATAGTGC+TGG + chr1_2:56194165-56194184 None:intergenic 40.0%
CACTATTAAGGCTAAGAACG+AGG - chr1_2:56194166-56194185 Msa0078570:intron 40.0%
GACAATGCAAGAGCTGTTAA+CGG - chr1_2:56194233-56194252 Msa0078570:intron 40.0%
GTTAACGGAAACATCTCTTG+TGG - chr1_2:56194248-56194267 Msa0078570:intron 40.0%
AGCACAACTCCAAATTCCAA+AGG + chr1_2:56194344-56194363 None:intergenic 40.0%
! GAATTTGGAGTTGTGCTTTC+TGG - chr1_2:56194347-56194366 Msa0078570:intron 40.0%
! TTGTGCTTTCTGGAAAGTCA+TGG - chr1_2:56194357-56194376 Msa0078570:intron 40.0%
! TTCCAAAGGGTGCGTATATT+TGG - chr1_2:56194399-56194418 Msa0078570:intron 40.0%
!! CGACAAGATTTTAGCACAAC+GGG + chr1_2:56194746-56194765 None:intergenic 40.0%
GTTGTGCTAAAATCTTGTCG+AGG - chr1_2:56194746-56194765 Msa0078570:CDS 40.0%
GAGGTTTACCCCTTATTATG+TGG - chr1_2:56194765-56194784 Msa0078570:CDS 40.0%
TGTGGGCAAAAATTTGATGG+AGG - chr1_2:56194783-56194802 Msa0078570:CDS 40.0%
TGAACAATGTCCATCTCAGT+CGG + chr1_2:56194922-56194941 None:intergenic 40.0%
GATGGACATTGTTCATTCAC+AGG - chr1_2:56194927-56194946 Msa0078570:intron 40.0%
TGTTCATTCACAGGCCATTA+TGG - chr1_2:56194936-56194955 Msa0078570:intron 40.0%
GTTCATTCACAGGCCATTAT+GGG - chr1_2:56194937-56194956 Msa0078570:intron 40.0%
TTGAACAAGCTGTTGTGATC+TGG - chr1_2:56194994-56195013 Msa0078570:intron 40.0%
GTTATTCAGTTGGCTGGAAT+TGG - chr1_2:56195171-56195190 Msa0078570:CDS 40.0%
AGTTGGCTGGAATTGGAAAT+AGG - chr1_2:56195178-56195197 Msa0078570:CDS 40.0%
!! TAAATCTTGGTTTTCCTCCC+AGG - chr1_2:56195217-56195236 Msa0078570:CDS 40.0%
! CTCCCTTGGATTATTTTCCA+AGG + chr1_2:56195246-56195265 None:intergenic 40.0%
CTTGGAAAATAATCCAAGGG+AGG - chr1_2:56195244-56195263 Msa0078570:CDS 40.0%
ATATGAATGAAGACCTCCCT+TGG + chr1_2:56195260-56195279 None:intergenic 40.0%
AGCAACAAAATGCTGGGATA+TGG - chr1_2:56195283-56195302 Msa0078570:CDS 40.0%
ACAGTTTAAGCTGGGAAGAA+AGG - chr1_2:56195337-56195356 Msa0078570:CDS 40.0%
CAGTTTAAGCTGGGAAGAAA+GGG - chr1_2:56195338-56195357 Msa0078570:CDS 40.0%
TTCCTCACCAGAAATAGTGA+AGG - chr1_2:56195415-56195434 Msa0078570:CDS 40.0%
!! TACCTTCACTATTTCTGGTG+AGG + chr1_2:56195420-56195439 None:intergenic 40.0%
! GAAATTACCAAGAGCATGCA+TGG + chr1_2:56195630-56195649 None:intergenic 40.0%
! AGCAAGTAAAGCATTTGCTC+GGG - chr1_2:56195686-56195705 Msa0078570:CDS 40.0%
TAATGAGAGTCGTAGCAAGA+TGG + chr1_2:56195745-56195764 None:intergenic 40.0%
TCATATACAACCTGCCAAGA+AGG - chr1_2:56195958-56195977 Msa0078570:intron 40.0%
!!! CGTGTCACTTGTTTTACATC+TGG - chr1_2:56196075-56196094 Msa0078570:intron 40.0%
AGTATTTGCTCTCATGTACC+AGG + chr1_2:56196134-56196153 None:intergenic 40.0%
GTCGAGTTTGTCATGAATAC+TGG - chr1_2:56196316-56196335 Msa0078570:CDS 40.0%
! CCGCATTCGCCTTTTTAAAT+AGG + chr1_2:56196470-56196489 None:intergenic 40.0%
TCTTACTGACAATAAGCCAG+CGG - chr1_2:56196515-56196534 Msa0078570:CDS 40.0%
! TTCGTCCAACCTTAGTCTTT+GGG - chr1_2:56196686-56196705 Msa0078570:intron 40.0%
GGGAAAAAACCCAAAGACTA+AGG + chr1_2:56196698-56196717 None:intergenic 40.0%
TAGATGTTTGTGTGTGTCGG+TGG - chr1_2:56187222-56187241 Msa0078570:three_prime_UTR 45.0%
TGCTTATTGCCCTTTGCATG+AGG - chr1_2:56187312-56187331 Msa0078570:three_prime_UTR 45.0%
CCATCAATGACCTCATGCAA+AGG + chr1_2:56187325-56187344 None:intergenic 45.0%
CCTTTGCATGAGGTCATTGA+TGG - chr1_2:56187322-56187341 Msa0078570:three_prime_UTR 45.0%
! CGATTTTCCATCAGTTCCAC+CGG - chr1_2:56187382-56187401 Msa0078570:CDS 45.0%
! GATTTTCCATCAGTTCCACC+GGG - chr1_2:56187383-56187402 Msa0078570:CDS 45.0%
GTATATGACTCAAAACCCGG+TGG + chr1_2:56187401-56187420 None:intergenic 45.0%
GAATCACAGTCAACTCAGGT+CGG - chr1_2:56187506-56187525 Msa0078570:CDS 45.0%
TTTAGGAAGACAAGGTCTCG+AGG + chr1_2:56187782-56187801 None:intergenic 45.0%
TCGAGACCTTGTCTTCCTAA+AGG - chr1_2:56187781-56187800 Msa0078570:intron 45.0%
! AGGACTCCTTTAGGAAGACA+AGG + chr1_2:56187790-56187809 None:intergenic 45.0%
TCTTCAGTGGGGTAGAAAAC+AGG + chr1_2:56188282-56188301 None:intergenic 45.0%
! TGTTTTCTACCCCACTGAAG+AGG - chr1_2:56188281-56188300 Msa0078570:intron 45.0%
GATTCCATATGGTTCAGCTC+TGG + chr1_2:56188465-56188484 None:intergenic 45.0%
AAGGAGGTTTCCATGAACGT+GGG + chr1_2:56188502-56188521 None:intergenic 45.0%
! TTTTCCTTGAGAGGACAAGG+AGG + chr1_2:56188518-56188537 None:intergenic 45.0%
AATTCGCTACTCGTGTTCAG+AGG - chr1_2:56188558-56188577 Msa0078570:CDS 45.0%
ACTGGAACAGAACCTAATGC+AGG - chr1_2:56188686-56188705 Msa0078570:intron 45.0%
CCTTCTGTGGAGAACATTGA+GGG - chr1_2:56188866-56188885 Msa0078570:intron 45.0%
ACATTGAGGGTGAATACTGG+CGG - chr1_2:56188879-56188898 Msa0078570:intron 45.0%
TATGGAGCTGATCTGGAAAC+TGG - chr1_2:56189047-56189066 Msa0078570:intron 45.0%
ATGGAGCTGATCTGGAAACT+GGG - chr1_2:56189048-56189067 Msa0078570:intron 45.0%
! GATCTGGAAACTGGGAGTTT+TGG - chr1_2:56189056-56189075 Msa0078570:intron 45.0%
TCATAAGAGAGCAGAGATCC+TGG + chr1_2:56189173-56189192 None:intergenic 45.0%
!! TATCTGGTGTTGTAGTGCCA+TGG - chr1_2:56189204-56189223 Msa0078570:intron 45.0%
GAAAGACGTGCTAGAAGACA+AGG + chr1_2:56189284-56189303 None:intergenic 45.0%
CAGCAGGTATAAGCATGAGT+TGG + chr1_2:56189319-56189338 None:intergenic 45.0%
CAACTCATGCTTATACCTGC+TGG - chr1_2:56189317-56189336 Msa0078570:intron 45.0%
AAATTTGTCCGGTCCCAACT+TGG - chr1_2:56189504-56189523 Msa0078570:intron 45.0%
AATTTGTCCGGTCCCAACTT+GGG - chr1_2:56189505-56189524 Msa0078570:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG + chr1_2:56189761-56189780 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG + chr1_2:56189762-56189781 None:intergenic 45.0%
CGCTGCAACGTAATTCTAAG+AGG - chr1_2:56189767-56189786 Msa0078570:CDS 45.0%
GTATTGTTAATGTGCCACGG+CGG + chr1_2:56190027-56190046 None:intergenic 45.0%
TGAGATGGTCTACATGCTTG+AGG + chr1_2:56190214-56190233 None:intergenic 45.0%
TGTGCACATGGACAAGCATA+AGG + chr1_2:56190311-56190330 None:intergenic 45.0%
CATATGCAATACACCCTTCG+AGG - chr1_2:56190378-56190397 Msa0078570:CDS 45.0%
GTGAGAATAAGGAACCCATC+TGG - chr1_2:56190431-56190450 Msa0078570:CDS 45.0%
GCAAAAGGATGTCAACCAGA+TGG + chr1_2:56190449-56190468 None:intergenic 45.0%
TTAATTGTGGGTGCAGCATG+TGG - chr1_2:56190588-56190607 Msa0078570:CDS 45.0%
ATCTGGGTGCTCCAAAAATG+TGG - chr1_2:56190644-56190663 Msa0078570:CDS 45.0%
GGTGCTCCAAAAATGTGGTA+TGG - chr1_2:56190649-56190668 Msa0078570:CDS 45.0%
! GGGACACCATACCACATTTT+TGG + chr1_2:56190658-56190677 None:intergenic 45.0%
!! ACCTGACTTGCTTCATAAGC+TGG - chr1_2:56190744-56190763 Msa0078570:CDS 45.0%
ACCAGCTTATGAAGCAAGTC+AGG + chr1_2:56190748-56190767 None:intergenic 45.0%
CGATATCTTCACATTGGGTG+GGG - chr1_2:56190923-56190942 Msa0078570:intron 45.0%
CCTATAAACTGGCACACCTT+TGG + chr1_2:56191097-56191116 None:intergenic 45.0%
! CCAAAGGTGTGCCAGTTTAT+AGG - chr1_2:56191094-56191113 Msa0078570:intron 45.0%
TATAGGTGTGTCCAAAACCC+TGG - chr1_2:56191111-56191130 Msa0078570:intron 45.0%
ATAGGTGTGTCCAAAACCCT+GGG - chr1_2:56191112-56191131 Msa0078570:intron 45.0%
! GAATAAAGTCCCCAGGGTTT+TGG + chr1_2:56191125-56191144 None:intergenic 45.0%
ACAATTGAACCCAGAGTGGT+AGG + chr1_2:56191163-56191182 None:intergenic 45.0%
TACCACTCTGGGTTCAATTG+TGG - chr1_2:56191162-56191181 Msa0078570:intron 45.0%
TTAATGTAGCTCCCGTTGAC+TGG - chr1_2:56191205-56191224 Msa0078570:intron 45.0%
CAGCAAAGTAATCTCCCACT+GGG + chr1_2:56191337-56191356 None:intergenic 45.0%
TCAGCAAAGTAATCTCCCAC+TGG + chr1_2:56191338-56191357 None:intergenic 45.0%
CTAACACATCCCCTCACTTA+AGG + chr1_2:56191724-56191743 None:intergenic 45.0%
! TTAAAGCCTTGGCTCTTAGG+TGG - chr1_2:56192123-56192142 Msa0078570:intron 45.0%
GCACACAGTAAACAGGCTTA+TGG + chr1_2:56192221-56192240 None:intergenic 45.0%
TAAGCCTGTTTACTGTGTGC+GGG - chr1_2:56192221-56192240 Msa0078570:intron 45.0%
TTCATTGGAAGTAAGGGCAG+TGG - chr1_2:56192250-56192269 Msa0078570:intron 45.0%
GTTAGGTGGATGTCCAAGAA+TGG - chr1_2:56192335-56192354 Msa0078570:intron 45.0%
AAAGGAATGAAGGTGGAGAG+AGG - chr1_2:56192448-56192467 Msa0078570:intron 45.0%
AAGGAATGAAGGTGGAGAGA+GGG - chr1_2:56192449-56192468 Msa0078570:intron 45.0%
!! TCCATTCTGAAGCCTTGCAT+TGG - chr1_2:56192579-56192598 Msa0078570:CDS 45.0%
ACCAATGCAAGGCTTCAGAA+TGG + chr1_2:56192583-56192602 None:intergenic 45.0%
!! TTCTGAAGCCTTGCATTGGT+TGG - chr1_2:56192583-56192602 Msa0078570:CDS 45.0%
TCACTTGTCTTCATTGGGAG+TGG - chr1_2:56192651-56192670 Msa0078570:CDS 45.0%
TTGAGGGTCACTCGTAAATC+AGG + chr1_2:56192910-56192929 None:intergenic 45.0%
TCTATCTGTGGAACAGTGAC+AGG + chr1_2:56193199-56193218 None:intergenic 45.0%
! GGCTTTGACAGATGTTCCAA+TGG - chr1_2:56193485-56193504 Msa0078570:intron 45.0%
!! TCACAGAAGCATCTGTCACA+GGG + chr1_2:56193893-56193912 None:intergenic 45.0%
TGTGACAGATGCTTCTGTGA+CGG - chr1_2:56193893-56193912 Msa0078570:intron 45.0%
!! TAATTGGTCTTCTCTGCTCG+TGG + chr1_2:56193998-56194017 None:intergenic 45.0%
GAAAGATCTACTGGGGTAGA+AGG + chr1_2:56194023-56194042 None:intergenic 45.0%
! TAATAGTGCTGGAAGGTTGG+GGG + chr1_2:56194154-56194173 None:intergenic 45.0%
! CCTTAATAGTGCTGGAAGGT+TGG + chr1_2:56194157-56194176 None:intergenic 45.0%
CCAACCTTCCAGCACTATTA+AGG - chr1_2:56194154-56194173 Msa0078570:intron 45.0%
CCTTTCTGACGGGAATTGTT+TGG + chr1_2:56194275-56194294 None:intergenic 45.0%
CCAAACAATTCCCGTCAGAA+AGG - chr1_2:56194272-56194291 Msa0078570:intron 45.0%
AATACGAGGACCTTTCTGAC+GGG + chr1_2:56194285-56194304 None:intergenic 45.0%
CAATACGAGGACCTTTCTGA+CGG + chr1_2:56194286-56194305 None:intergenic 45.0%
GAAAGGTCCTCGTATTGCAA+AGG - chr1_2:56194289-56194308 Msa0078570:intron 45.0%
CTCGTATTGCAAAGGTTGTC+CGG - chr1_2:56194297-56194316 Msa0078570:intron 45.0%
CAACTGCAATGTTGAGCCTT+TGG - chr1_2:56194325-56194344 Msa0078570:intron 45.0%
AAAGTCATGGTGCAGCATTC+AGG - chr1_2:56194370-56194389 Msa0078570:intron 45.0%
GACCAAATATACGCACCCTT+TGG + chr1_2:56194404-56194423 None:intergenic 45.0%
GAAATTCTTGATGCTGGACG+TGG - chr1_2:56194569-56194588 Msa0078570:intron 45.0%
ACGTGGTTCGCCTCTATTTA+TGG - chr1_2:56194586-56194605 Msa0078570:intron 45.0%
AACAATGTCCATCTCAGTCG+GGG + chr1_2:56194920-56194939 None:intergenic 45.0%
GAACAATGTCCATCTCAGTC+GGG + chr1_2:56194921-56194940 None:intergenic 45.0%
! TTGAGAGGACTGCTTTGAGT+CGG - chr1_2:56195145-56195164 Msa0078570:CDS 45.0%
! ATTTTCCAAGGAAACCTGGG+AGG + chr1_2:56195234-56195253 None:intergenic 45.0%
TCACAAACCATGCATGCTCT+TGG - chr1_2:56195620-56195639 Msa0078570:intron 45.0%
GCTTTACTTGCTTCACCCTT+GGG + chr1_2:56195678-56195697 None:intergenic 45.0%
TGCTTTACTTGCTTCACCCT+TGG + chr1_2:56195679-56195698 None:intergenic 45.0%
AACCTGCCAAGAAGGAAAGT+GGG - chr1_2:56195966-56195985 Msa0078570:intron 45.0%
CAAACTCCCACTTTCCTTCT+TGG + chr1_2:56195975-56195994 None:intergenic 45.0%
GTTTACAGCCCTAAAACACC+AGG + chr1_2:56196188-56196207 None:intergenic 45.0%
ATGAATACTGGGACTTCCGT+CGG - chr1_2:56196328-56196347 Msa0078570:CDS 45.0%
! CTCCACCATTTAAAGTGGTC+TGG + chr1_2:56196380-56196399 None:intergenic 45.0%
CAGACCACTTTAAATGGTGG+AGG - chr1_2:56196378-56196397 Msa0078570:CDS 45.0%
! ACCACTTTAAATGGTGGAGG+TGG - chr1_2:56196381-56196400 Msa0078570:CDS 45.0%
TCCACCTCCACCATTTAAAG+TGG + chr1_2:56196385-56196404 None:intergenic 45.0%
TTTCAGTACTGCAACAGCTC+CGG + chr1_2:56196445-56196464 None:intergenic 45.0%
ATCAATCACCTAGGGTGGTT+GGG + chr1_2:56196589-56196608 None:intergenic 45.0%
AATCAATCACCTAGGGTGGT+TGG + chr1_2:56196590-56196609 None:intergenic 45.0%
! CTTCGTCCAACCTTAGTCTT+TGG - chr1_2:56196685-56196704 Msa0078570:intron 45.0%
TCTATAACCTCCATTCAGGC+GGG + chr1_2:56196719-56196738 None:intergenic 45.0%
CTCTATAACCTCCATTCAGG+CGG + chr1_2:56196720-56196739 None:intergenic 45.0%
! ATTCTGAAAGGCAAGGCTAC+CGG - chr1_2:56196873-56196892 Msa0078570:intron 45.0%
! AACGTATGCATCTAGAGTCC+AGG + chr1_2:56196974-56196993 None:intergenic 45.0%
TGGACTCTAGATGCATACGT+TGG - chr1_2:56196973-56196992 Msa0078570:CDS 45.0%
!! TATTAATTAAATGTTAATAT+AGG - chr1_2:56188042-56188061 Msa0078570:intron 5.0%
!!! TAAAATAATAATAATTTTTC+GGG - chr1_2:56189554-56189573 Msa0078570:CDS 5.0%
!!! AAAATTTTACAATTTAATAA+TGG + chr1_2:56190153-56190172 None:intergenic 5.0%
!! TTTAATAGTATTATAATTAT+AGG + chr1_2:56191825-56191844 None:intergenic 5.0%
!! TAATTATAATACTATTAAAA+AGG - chr1_2:56191826-56191845 Msa0078570:intron 5.0%
TGATGGGGACTGAGCTTATG+AGG - chr1_2:56187339-56187358 Msa0078570:exon 50.0%
TCAAAACCCGGTGGAACTGA+TGG + chr1_2:56187392-56187411 None:intergenic 50.0%
CAGTCAACTCAGGTCGGAAA+TGG - chr1_2:56187512-56187531 Msa0078570:CDS 50.0%
GATCCCTTCGACGAAGAAGA+TGG - chr1_2:56187567-56187586 Msa0078570:CDS 50.0%
! AACCATGGAAAGTGCGAGAG+CGG - chr1_2:56187593-56187612 Msa0078570:CDS 50.0%
! AGGAAGACGCTGATTGTGAG+CGG - chr1_2:56187621-56187640 Msa0078570:CDS 50.0%
CTTCCTAAAGGAGTCCTCAG+AGG - chr1_2:56187793-56187812 Msa0078570:intron 50.0%
! CATCCTCTGAGGACTCCTTT+AGG + chr1_2:56187799-56187818 None:intergenic 50.0%
TGACAATCGAAGTTTCGGGC+AGG - chr1_2:56188203-56188222 Msa0078570:intron 50.0%
TGTGGTCTACGAGCATCTTC+TGG + chr1_2:56188246-56188265 None:intergenic 50.0%
AAGAGCGAGACCTCTTCAGT+GGG + chr1_2:56188294-56188313 None:intergenic 50.0%
GTATTGTTCCCCCACGTTCA+TGG - chr1_2:56188489-56188508 Msa0078570:intron 50.0%
AGGAGGTTTCCATGAACGTG+GGG + chr1_2:56188501-56188520 None:intergenic 50.0%
CAAGGAGGTTTCCATGAACG+TGG + chr1_2:56188503-56188522 None:intergenic 50.0%
GAAACCTCCTTGTCCTCTCA+AGG - chr1_2:56188511-56188530 Msa0078570:CDS 50.0%
! ATGGGAGTGGATAATGGCAC+TGG - chr1_2:56188668-56188687 Msa0078570:CDS 50.0%
ACCTGGCCCAGAATTTACCT+TGG - chr1_2:56188739-56188758 Msa0078570:intron 50.0%
TCCAAGGTAAATTCTGGGCC+AGG + chr1_2:56188743-56188762 None:intergenic 50.0%
TGGTACCTTAGAGCCTTCTG+TGG - chr1_2:56188853-56188872 Msa0078570:intron 50.0%
GTTCTCCACAGAAGGCTCTA+AGG + chr1_2:56188861-56188880 None:intergenic 50.0%
GCCTTCTGTGGAGAACATTG+AGG - chr1_2:56188865-56188884 Msa0078570:intron 50.0%
CCCTCAATGTTCTCCACAGA+AGG + chr1_2:56188869-56188888 None:intergenic 50.0%
GGTGCTTTATGGAGCTGATC+TGG - chr1_2:56189040-56189059 Msa0078570:intron 50.0%
!!! GAAACTGGGAGTTTTGGGAG+TGG - chr1_2:56189062-56189081 Msa0078570:intron 50.0%
TAGGTGTGTCCAAAACCCTG+GGG - chr1_2:56191113-56191132 Msa0078570:intron 50.0%
AGCCACAATTGAACCCAGAG+TGG + chr1_2:56191167-56191186 None:intergenic 50.0%
TTGTGGCTTCAACTGTGCTG+AGG - chr1_2:56191179-56191198 Msa0078570:intron 50.0%
TCCATGTGGAAGCCAGTCAA+CGG + chr1_2:56191220-56191239 None:intergenic 50.0%
GTCCACGCTTCAATCCCAAA+AGG - chr1_2:56191697-56191716 Msa0078570:intron 50.0%
TCCCAAAAGGCCCTTAAGTG+AGG - chr1_2:56191710-56191729 Msa0078570:intron 50.0%
! CCCTCACTTAAGGGCCTTTT+GGG + chr1_2:56191714-56191733 None:intergenic 50.0%
CCCAAAAGGCCCTTAAGTGA+GGG - chr1_2:56191711-56191730 Msa0078570:intron 50.0%
CCAAAAGGCCCTTAAGTGAG+GGG - chr1_2:56191712-56191731 Msa0078570:intron 50.0%
GGGGTTACTCAGGAACAAAC+TGG - chr1_2:56192025-56192044 Msa0078570:intron 50.0%
GGAACAAACTGGCAACCACT+TGG - chr1_2:56192036-56192055 Msa0078570:intron 50.0%
AACTGGCAACCACTTGGTCA+TGG - chr1_2:56192042-56192061 Msa0078570:intron 50.0%
ACAAGACAGCCATGACCAAG+TGG + chr1_2:56192054-56192073 None:intergenic 50.0%
CACTTGACAACTGTAGACGC+TGG + chr1_2:56192093-56192112 None:intergenic 50.0%
TGAACCCGCACACAGTAAAC+AGG + chr1_2:56192228-56192247 None:intergenic 50.0%
GTGTGCGGGTTCAACTTCAT+TGG - chr1_2:56192235-56192254 Msa0078570:intron 50.0%
AGGAATGAAGGTGGAGAGAG+GGG - chr1_2:56192450-56192469 Msa0078570:intron 50.0%
TCCATCTCAACACGTGCCTA+GGG + chr1_2:56193054-56193073 None:intergenic 50.0%
TTGAGATGGAGCGGGTAAGA+AGG - chr1_2:56193064-56193083 Msa0078570:intron 50.0%
TGAGATGGAGCGGGTAAGAA+GGG - chr1_2:56193065-56193084 Msa0078570:intron 50.0%
GATGCTGCATTCCCTTTCAC+TGG + chr1_2:56193145-56193164 None:intergenic 50.0%
GGCAAAATTAGACCTTGGGC+TGG - chr1_2:56193356-56193375 Msa0078570:intron 50.0%
CCTGGAAGAATGAGACGAGT+CGG + chr1_2:56193445-56193464 None:intergenic 50.0%
CTCCAAACCTACGTGTGAGA+TGG - chr1_2:56193566-56193585 Msa0078570:intron 50.0%
AGCCATCTCACACGTAGGTT+TGG + chr1_2:56193571-56193590 None:intergenic 50.0%
! CGATTAGCCATCTCACACGT+AGG + chr1_2:56193576-56193595 None:intergenic 50.0%
TCATCTCCGTGTTGAGCTAG+CGG + chr1_2:56193702-56193721 None:intergenic 50.0%
CTACAACCAGCAGGCATATG+AGG + chr1_2:56193822-56193841 None:intergenic 50.0%
!! AGAAGCATCTGTCACAGGGA+TGG + chr1_2:56193889-56193908 None:intergenic 50.0%
!! GTCACAGAAGCATCTGTCAC+AGG + chr1_2:56193894-56193913 None:intergenic 50.0%
GTGACAGATGCTTCTGTGAC+GGG - chr1_2:56193894-56193913 Msa0078570:intron 50.0%
GGGTGAGAAGGATGCTATTG+TGG - chr1_2:56193914-56193933 Msa0078570:intron 50.0%
CTTGAGCCTGAATCTTCACG+AGG + chr1_2:56193942-56193961 None:intergenic 50.0%
TTACTGGTGCAGACTCAGCT+AGG - chr1_2:56194057-56194076 Msa0078570:intron 50.0%
CGTTCCAGCTTCTACAAGAG+CGG - chr1_2:56194082-56194101 Msa0078570:intron 50.0%
CGGACAACCTTTGCAATACG+AGG + chr1_2:56194299-56194318 None:intergenic 50.0%
! CAACATTGCAGTTGATGCGC+CGG + chr1_2:56194319-56194338 None:intergenic 50.0%
GAGTCGGCGAGTTATTCAGT+TGG - chr1_2:56195161-56195180 Msa0078570:CDS 50.0%
! GTTTTCCTCCCAGGTTTCCT+TGG - chr1_2:56195226-56195245 Msa0078570:CDS 50.0%
CAGCAGGATGTAAAGGAGGA+AGG + chr1_2:56195364-56195383 None:intergenic 50.0%
CTTCCTCCTTTACATCCTGC+TGG - chr1_2:56195362-56195381 Msa0078570:CDS 50.0%
AAAAAGAAGGGGCTGCCCAA+GGG - chr1_2:56195660-56195679 Msa0078570:CDS 50.0%
TGAGAGTCGTAGCAAGATGG+TGG + chr1_2:56195742-56195761 None:intergenic 50.0%
CAACCTGCCAAGAAGGAAAG+TGG - chr1_2:56195965-56195984 Msa0078570:intron 50.0%
GCTGGCCAGACCACTTTAAA+TGG - chr1_2:56196372-56196391 Msa0078570:CDS 50.0%
GGCCAGACCACTTTAAATGG+TGG - chr1_2:56196375-56196394 Msa0078570:CDS 50.0%
GTGGAGGTGGAAGTGATCAA+GGG - chr1_2:56196394-56196413 Msa0078570:CDS 50.0%
TGGAGGTGGAAGTGATCAAG+GGG - chr1_2:56196395-56196414 Msa0078570:CDS 50.0%
!! GTGGGTGTGTGCTGATTCAT+AGG + chr1_2:56196423-56196442 None:intergenic 50.0%
ATGAATCAGCACACACCCAC+CGG - chr1_2:56196423-56196442 Msa0078570:CDS 50.0%
TCACAAAACCCAACCACCCT+AGG - chr1_2:56196578-56196597 Msa0078570:CDS 50.0%
!!! TTTTTTCCCCGCCTGAATGG+AGG - chr1_2:56196709-56196728 Msa0078570:intron 50.0%
CTATAACCTCCATTCAGGCG+GGG + chr1_2:56196718-56196737 None:intergenic 50.0%
AGATGCACTTGTCGTCGTCG+AGG + chr1_2:56187486-56187505 None:intergenic 55.0%
AACCGCTCTCGCACTTTCCA+TGG + chr1_2:56187598-56187617 None:intergenic 55.0%
AAAGTGCGAGAGCGGTTCAG+AGG - chr1_2:56187601-56187620 Msa0078570:CDS 55.0%
GGCAATCTGGACATCCTCTG+AGG + chr1_2:56187810-56187829 None:intergenic 55.0%
TCGGGCAGGTCATTGCTAGA+TGG - chr1_2:56188217-56188236 Msa0078570:intron 55.0%
AGAGCGAGACCTCTTCAGTG+GGG + chr1_2:56188293-56188312 None:intergenic 55.0%
CAAGAGCGAGACCTCTTCAG+TGG + chr1_2:56188295-56188314 None:intergenic 55.0%
CTGAAGAGGTCTCGCTCTTG+TGG - chr1_2:56188295-56188314 Msa0078570:intron 55.0%
CGCTCCAGAGCTGAACCATA+TGG - chr1_2:56188458-56188477 Msa0078570:intron 55.0%
GGAGGTTTCCATGAACGTGG+GGG + chr1_2:56188500-56188519 None:intergenic 55.0%
TGAGGGTGAATACTGGCGGA+TGG - chr1_2:56188883-56188902 Msa0078570:intron 55.0%
! ACATTGGCCCAAGTTGGGAC+CGG + chr1_2:56189515-56189534 None:intergenic 55.0%
TGCAATACACCCTTCGAGGG+TGG - chr1_2:56190382-56190401 Msa0078570:CDS 55.0%
GCAATACACCCTTCGAGGGT+GGG - chr1_2:56190383-56190402 Msa0078570:CDS 55.0%
TTTCCTCGAGCCTACCACTC+TGG - chr1_2:56191150-56191169 Msa0078570:intron 55.0%
TTCCTCGAGCCTACCACTCT+GGG - chr1_2:56191151-56191170 Msa0078570:intron 55.0%
CCATGTGGAAGCCAGTCAAC+GGG + chr1_2:56191219-56191238 None:intergenic 55.0%
TATAGAGCTGTACCGGGAGC+AGG - chr1_2:56191248-56191267 Msa0078570:intron 55.0%
ATAGAGCTGTACCGGGAGCA+GGG - chr1_2:56191249-56191268 Msa0078570:intron 55.0%
AGCTATTGCTTGGGGCTGCT+AGG - chr1_2:56191298-56191317 Msa0078570:intron 55.0%
GCTATTGCTTGGGGCTGCTA+GGG - chr1_2:56191299-56191318 Msa0078570:intron 55.0%
!!! GGCCTTTTGGGATTGAAGCG+TGG + chr1_2:56191702-56191721 None:intergenic 55.0%
! CCCCTCACTTAAGGGCCTTT+TGG + chr1_2:56191715-56191734 None:intergenic 55.0%
! AAGCCTTGGCTCTTAGGTGG+AGG - chr1_2:56192126-56192145 Msa0078570:intron 55.0%
TGGAAGTAAGGGCAGTGGCA+AGG - chr1_2:56192255-56192274 Msa0078570:intron 55.0%
TCCCTAGGCACGTGTTGAGA+TGG - chr1_2:56193050-56193069 Msa0078570:intron 55.0%
CTCCATCTCAACACGTGCCT+AGG + chr1_2:56193055-56193074 None:intergenic 55.0%
AGGCACGTGTTGAGATGGAG+CGG - chr1_2:56193055-56193074 Msa0078570:intron 55.0%
AGTGACAGGCAGCAGCAGAT+AGG + chr1_2:56193185-56193204 None:intergenic 55.0%
AAGAAGTTAGGGCCAGCCCA+AGG + chr1_2:56193371-56193390 None:intergenic 55.0%
! CCGACTCGTCTCATTCTTCC+AGG - chr1_2:56193442-56193461 Msa0078570:intron 55.0%
CGGCGGAGATAAAGCATACG+AGG + chr1_2:56193682-56193701 None:intergenic 55.0%
GAGGTTCCTCATATGCCTGC+TGG - chr1_2:56193813-56193832 Msa0078570:intron 55.0%
!! TGCTTCTGTGACGGGTGAGA+AGG - chr1_2:56193902-56193921 Msa0078570:intron 55.0%
GTGGTGCCTCGTGAAGATTC+AGG - chr1_2:56193933-56193952 Msa0078570:intron 55.0%
GCATCCGCTCTTGTAGAAGC+TGG + chr1_2:56194089-56194108 None:intergenic 55.0%
TCTACAAGAGCGGATGCCAG+CGG - chr1_2:56194092-56194111 Msa0078570:intron 55.0%
CTGGAAGGTTGGGGGTTTGA+AGG + chr1_2:56194146-56194165 None:intergenic 55.0%
TCAGTCGGGGATGGGTAAAG+AGG + chr1_2:56194907-56194926 None:intergenic 55.0%
TTACCCATCCCCGACTGAGA+TGG - chr1_2:56194909-56194928 Msa0078570:intron 55.0%
TGTCCATCTCAGTCGGGGAT+GGG + chr1_2:56194915-56194934 None:intergenic 55.0%
ATGTCCATCTCAGTCGGGGA+TGG + chr1_2:56194916-56194935 None:intergenic 55.0%
CGGCGAGTTATTCAGTTGGC+TGG - chr1_2:56195165-56195184 Msa0078570:CDS 55.0%
CTGCCAGCAGGATGTAAAGG+AGG + chr1_2:56195368-56195387 None:intergenic 55.0%
AGGCTGCCAGCAGGATGTAA+AGG + chr1_2:56195371-56195390 None:intergenic 55.0%
GAAAAAGAAGGGGCTGCCCA+AGG - chr1_2:56195659-56195678 Msa0078570:CDS 55.0%
CTCCCACTTTCCTTCTTGGC+AGG + chr1_2:56195971-56195990 None:intergenic 55.0%
GCTTGTGAAAGCTGCCCTTG+AGG + chr1_2:56196354-56196373 None:intergenic 55.0%
CAAGGGCAGCTTTCACAAGC+TGG - chr1_2:56196354-56196373 Msa0078570:CDS 55.0%
GGTGGAGGTGGAAGTGATCA+AGG - chr1_2:56196393-56196412 Msa0078570:CDS 55.0%
AGTACTGCAACAGCTCCGGT+GGG + chr1_2:56196441-56196460 None:intergenic 55.0%
ATTGGGATCTGTTCAGCCGC+TGG + chr1_2:56196534-56196553 None:intergenic 55.0%
!!! GGGTTTTTTCCCCGCCTGAA+TGG - chr1_2:56196706-56196725 Msa0078570:intron 55.0%
GTCGTCGTCGAGGAACTCGT+CGG + chr1_2:56187476-56187495 None:intergenic 60.0%
ATACACCCTTCGAGGGTGGG+AGG - chr1_2:56190386-56190405 Msa0078570:CDS 60.0%
TACACCCTTCGAGGGTGGGA+GGG - chr1_2:56190387-56190406 Msa0078570:CDS 60.0%
AGGGTGGGAGGGGATGCTAT+GGG - chr1_2:56190398-56190417 Msa0078570:CDS 60.0%
TGGACAGGTGGGGTGAAGTC+TGG + chr1_2:56190971-56190990 None:intergenic 60.0%
AACCCAGAGTGGTAGGCTCG+AGG + chr1_2:56191156-56191175 None:intergenic 60.0%
!! CCCGTTGACTGGCTTCCACA+TGG - chr1_2:56191216-56191235 Msa0078570:intron 60.0%
TAGAGCTGTACCGGGAGCAG+GGG - chr1_2:56191250-56191269 Msa0078570:intron 60.0%
AAGTCTTACGCCCCTGCTCC+CGG + chr1_2:56191263-56191282 None:intergenic 60.0%
GGAAGCAGTACGAGCCCAGT+GGG - chr1_2:56191320-56191339 Msa0078570:intron 60.0%
GGCACGTGTTGAGATGGAGC+GGG - chr1_2:56193056-56193075 Msa0078570:intron 60.0%
TCTCCGCCGCTAGCTCAACA+CGG - chr1_2:56193693-56193712 Msa0078570:intron 60.0%
TCTCCGTGTTGAGCTAGCGG+CGG + chr1_2:56193699-56193718 None:intergenic 60.0%
CATCCTGCTGGCAGCCTTGA+TGG - chr1_2:56195374-56195393 Msa0078570:CDS 60.0%
AAGCCATCAAGGCTGCCAGC+AGG + chr1_2:56195380-56195399 None:intergenic 60.0%
AAAGCTGCCCTTGAGGCCGA+CGG + chr1_2:56196347-56196366 None:intergenic 60.0%
CAGTACTGCAACAGCTCCGG+TGG + chr1_2:56196442-56196461 None:intergenic 60.0%
ACACCCTTCGAGGGTGGGAG+GGG - chr1_2:56190388-56190407 Msa0078570:CDS 65.0%
CATCCCCTCCCACCCTCGAA+GGG + chr1_2:56190394-56190413 None:intergenic 65.0%
GAGGGTGGGAGGGGATGCTA+TGG - chr1_2:56190397-56190416 Msa0078570:CDS 65.0%
GGGAAGCAGTACGAGCCCAG+TGG - chr1_2:56191319-56191338 Msa0078570:intron 65.0%
GGGCCTCCACCTAAGAGCCA+AGG + chr1_2:56192132-56192151 None:intergenic 65.0%
TGGGACTTCCGTCGGCCTCA+AGG - chr1_2:56196336-56196355 Msa0078570:CDS 65.0%
GGGACTTCCGTCGGCCTCAA+GGG - chr1_2:56196337-56196356 Msa0078570:CDS 65.0%
GCATCCCCTCCCACCCTCGA+AGG + chr1_2:56190395-56190414 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56186896 56197047 56186896 ID=Msa0078570;Name=Msa0078570
chr1_2 mRNA 56186896 56197047 56186896 ID=Msa0078570-mRNA-1;Parent=Msa0078570;Name=Msa0078570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.84|0.84|1|1|13|448|1286
chr1_2 exon 56186896 56187649 56186896 ID=Msa0078570-mRNA-1:exon:17583;Parent=Msa0078570-mRNA-1
chr1_2 exon 56188507 56188704 56188507 ID=Msa0078570-mRNA-1:exon:17582;Parent=Msa0078570-mRNA-1
chr1_2 exon 56189336 56189439 56189336 ID=Msa0078570-mRNA-1:exon:17581;Parent=Msa0078570-mRNA-1
chr1_2 exon 56189536 56190886 56189536 ID=Msa0078570-mRNA-1:exon:17580;Parent=Msa0078570-mRNA-1
chr1_2 exon 56192512 56192880 56192512 ID=Msa0078570-mRNA-1:exon:17579;Parent=Msa0078570-mRNA-1
chr1_2 exon 56193178 56193339 56193178 ID=Msa0078570-mRNA-1:exon:17578;Parent=Msa0078570-mRNA-1
chr1_2 exon 56194681 56194902 56194681 ID=Msa0078570-mRNA-1:exon:17577;Parent=Msa0078570-mRNA-1
chr1_2 exon 56195012 56195521 56195012 ID=Msa0078570-mRNA-1:exon:17576;Parent=Msa0078570-mRNA-1
chr1_2 exon 56195641 56195718 56195641 ID=Msa0078570-mRNA-1:exon:17575;Parent=Msa0078570-mRNA-1
chr1_2 exon 56196100 56196171 56196100 ID=Msa0078570-mRNA-1:exon:17574;Parent=Msa0078570-mRNA-1
chr1_2 exon 56196291 56196654 56196291 ID=Msa0078570-mRNA-1:exon:17573;Parent=Msa0078570-mRNA-1
chr1_2 exon 56196744 56196785 56196744 ID=Msa0078570-mRNA-1:exon:17572;Parent=Msa0078570-mRNA-1
chr1_2 exon 56196965 56197047 56196965 ID=Msa0078570-mRNA-1:exon:17571;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56196965 56197047 56196965 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56196744 56196785 56196744 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56196291 56196654 56196291 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56196100 56196171 56196100 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56195641 56195718 56195641 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56195012 56195521 56195012 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56194681 56194902 56194681 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56193178 56193339 56193178 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56192512 56192880 56192512 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56189536 56190886 56189536 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56189336 56189439 56189336 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56188507 56188704 56188507 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 CDS 56187344 56187649 56187344 ID=Msa0078570-mRNA-1:cds;Parent=Msa0078570-mRNA-1
chr1_2 three_prime_UTR 56186896 56187343 56186896 ID=Msa0078570-mRNA-1:three_prime_utr;Parent=Msa0078570-mRNA-1
Gene Sequence

>Msa0078570

ATGCATTTGCTTTTTGATCTGTCATTATGTTGTTGTATGATGAATGTGAATTGCGTCGTTGATAATGTATCTGTTGGAGAAGAGTACGGTCGACATCTTTCACTTTACGAGTACGTTTCTTCAAAGGAAGACGGATCAGAGACATTATTGCTTATTGCCCTTTGCATGAGGTCATTGATGGGGACTGAGCTTATGAGGATATGTGTTAAAGAAGATGACGATTTTCCATCAGTTCCACCGGGTTTTGAGTCATATACATCTTTCGCACTGAAGAGGGTAGAAGAGAATGAGAAAAACAATGATAAAAATCCGACGAGTTCCTCGACGACGACAAGTGCATCTGAATCACAGTCAACTCAGGTCGGAAATGGTGTCCAATTGAGTGATAGTGCAAAGGTTTCTAGATCCCTTCGACGAAGAAGATGGATTAACCATGGAAAGTGCGAGAGCGGTTCAGAGGAAGACGCTGATTGTGAGCGGCATGATCAAAATTTCTCCTCGAGACCTTGTCTTCCTAAAGGAGTCCTCAGAGGATGTCCAGATTGCCGTAATTGCCAAAAGGTCATTGCTAGATGGCGACCAGAAGATGCTCGTAGACCACAAATTGAGAATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCAAAGATTCGCTCCAGAGCTGAACCATATGGAATCTGTCGTATTGTTCCCCCACGTTCATGGAAACCTCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTCGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCAAGGATTCAAAATAATATGAAAAGGAAAAGGAGAAGATACACAAGAATGGGAGTGGATAATGGCACTGGAACAGAACCTAATGCAGGATTTTGTGAAGTTGAAACATTTGGGTTTGAACCTGGCCCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGACGAGTTTAAGGCCGAATACTTCAAAAATGATAATTTATCTCATCCAAGTGCTAATACAACAATTTTAAATGGTACCTTAGAGCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGAGTTTTGGGAGTGGTTTTCCTAGCAAGTCTAGTCAAGTTTCTGTTTCATACGAGCAGTACATAAAATCTGGGTGGAATTTAAATAACTTTGCAAGGTTACCAGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCATTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATCTGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGCAAAAGATGCATGCAAATTGGAAGAGGCCATGAGAAAGCAGTTACCTGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACGCAGCTTTCTCCTTCTATTCTTAAGTCCAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTATTCTAACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCCGTTGACTGGCTTCCACATGGACATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGTAAGACTTCTGTATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATTACTTTGCTGAAGAAAAACACTTCAGATAATCTAAAATGGAAAGATGTTTGTGGAAAAGACGGTCTTTTGGCAAAAGCATTCAAGGCACGTGTTGAGATGGAGCGGGTAAGAAGGGAATTTCTCTGCAGTTCTTCAAAGGCATTAAAAATGGAGAGTAGTTTTGATGCTACCAGTGAAAGGGAATGCAGCATCTGCTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCACTGTTCCACAGATAGATATGCTTGCTTGGATCATGCTAAGCAATTGTGTTCATGCTCTTGGAGCTCCAAATTTTTCCTCTTTCGTTATGATATCAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTATAGATGGGCAAAATTAGACCTTGGGCTGGCCCTAACTTCTTATGTCTCAGTAGATAAAAAAACAGTATGTCAGGAATTGAAATTGCAATCATCCGACTCGTCTCATTCTTCCAGGAGCAATGTCAATAATGAGGCGGCTTTGACAGATGTTCCAATGGTGGATCAAGCAAATTCTGCAAATAGCAAGGATCAGAGCTATCTTAAACAGAAGAATAGCTCCAAACCTACGTGTGAGATGGCTAATCGTAAGATCTTTGCTATTAAAGGAGAGTCTATCATTTGTAGATCAAAGCCGAGTGTCCCTGTTTGTGAATTCAATCAAGAGGATTCCTCGTATGCTTTATCTCCGCCGCTAGCTCAACACGGAGATGAGAAAAGTACACATTCAAGACCTAAAGATATCATACTTCTTAGTGACGACGAAGATGATGAAATGAAGATGTCAGATTCAAATAAAAGGAAGGAGGTTCCTCATATGCCTGCTGGTTGTAGAAATAAAGCAAGCCTGTGTAGTGATATAGAAGATAAAAGCTTGACCATCCCTGTGACAGATGCTTCTGTGACGGGTGAGAAGGATGCTATTGTGGTGCCTCGTGAAGATTCAGGCTCAAGTTCAACTCAGCTTTTACAAGTGAAACAAGAATGCCACGAGCAGAGAAGACCAATTATACCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTGGTGCAGACTCAGCTAGGAACGTTCCAGCTTCTACAAGAGCGGATGCCAGCGGTCATAGTTTAGAAAGTTTGGAGGTTTGTCCTTCAAACCCCCAACCTTCCAGCACTATTAAGGCTAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCTAATGTAACAGACAATGCAAGAGCTGTTAACGGAAACATCTCTTGTGGTCCAAACAATTCCCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGCATTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGGGAGGTCTTCATTCATATGTCAGCAACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAGTTTAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACATCCTGCTGGCAGCCTTGATGGCTTTGAAATGTTTGGATTTTCCTCACCAGAAATAGTGAAGGCTATTGAGGCACTAGATCGAAGTCGAGTTTGTCATGAATACTGGGACTTCCGTCGGCCTCAAGGGCAGCTTTCACAAGCTGGCCAGACCACTTTAAATGGTGGAGGTGGAAGTGATCAAGGGGTTCCTATGAATCAGCACACACCCACCGGAGCTGTTGCAGTACTGAAAAGCCTATTTAAAAAGGCGAATGCGGAAGAATTGAATTCATTGTACAACATTCTTACTGACAATAAGCCAGCGGCTGAACAGATCCCAATTGCAAAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCCTAG
Protein sequence

>Msa0078570

MHLLFDLSLCCCMMNVNCVVDNVSVGEEYGRHLSLYEYVSSKEDGSETLLLIALCMRSLMGTELMRICVKEDDDFPSVPPGFESYTSFALKRVEENEKNNDKNPTSSSTTTSASESQSTQVGNGVQLSDSAKVSRSLRRRRWINHGKCESGSEEDADCERHDQNFSSRPCLPKGVLRGCPDCRNCQKVIARWRPEDARRPQIENAPVFYPTEEEFQDTLKYISKIRSRAEPYGICRIVPPRSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGTKKSRIQNNMKRKRRRYTRMGVDNGTGTEPNAGFCEVETFGFEPGPEFTLETFKRYADEFKAEYFKNDNLSHPSANTTILNGTLEPSVENIEGEYWRMVESPTEEIEVLYGADLETGSFGSGFPSKSSQVSVSYEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNYMHLGAPKMWYGVPAKDACKLEEAMRKQLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFILTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSVSHDKLLLGAAREAVRAQWEITLLKKNTSDNLKWKDVCGKDGLLAKAFKARVEMERVRREFLCSSSKALKMESSFDATSERECSICFFDLHLSAAACHCSTDRYACLDHAKQLCSCSWSSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSYVSVDKKTVCQELKLQSSDSSHSSRSNVNNEAALTDVPMVDQANSANSKDQSYLKQKNSSKPTCEMANRKIFAIKGESIICRSKPSVPVCEFNQEDSSYALSPPLAQHGDEKSTHSRPKDIILLSDDEDDEMKMSDSNKRKEVPHMPAGCRNKASLCSDIEDKSLTIPVTDASVTGEKDAIVVPREDSGSSSTQLLQVKQECHEQRRPIIPSTPVDLSFHIGLTGADSARNVPASTRADASGHSLESLEVCPSNPQPSSTIKAKNEDNHEKFDGCSTSNVTDNARAVNGNISCGPNNSRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSIQAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENNPREVFIHMSATKCWDMVRERVNLEIAKQFKLGRKGLPPLHPAGSLDGFEMFGFSSPEIVKAIEALDRSRVCHEYWDFRRPQGQLSQAGQTTLNGGGGSDQGVPMNQHTPTGAVAVLKSLFKKANAEELNSLYNILTDNKPAAEQIPIAKILYEEIHKTQPP*