Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083830 | XP_013469353.1 | 99.430 | 526 | 3 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1079 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083830 | sp|Q2RAK2|KPYC1_ORYSJ | 83.871 | 527 | 84 | 1 | 1 | 526 | 1 | 527 | 0.0 | 931 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083830 | A0A072VP40 | 99.430 | 526 | 3 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1079 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035740 | Msa0083830 | 0.818223 | 2.193157e-52 | -8.615850e-47 |
Msa0083830 | Msa1396110 | 0.819359 | 1.210816e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083830 | MtrunA17_Chr1g0197911 | 99.430 | 526 | 3 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1079 |
Msa0083830 | MtrunA17_Chr7g0265591 | 81.784 | 527 | 95 | 1 | 1 | 526 | 1 | 527 | 0.0 | 921 |
Msa0083830 | MtrunA17_Chr1g0179541 | 80.529 | 529 | 84 | 3 | 1 | 526 | 1 | 513 | 0.0 | 887 |
Msa0083830 | MtrunA17_Chr6g0448901 | 43.030 | 495 | 269 | 7 | 30 | 521 | 22 | 506 | 8.00e-132 | 393 |
Msa0083830 | MtrunA17_Chr7g0263711 | 41.942 | 515 | 281 | 9 | 14 | 525 | 1 | 500 | 1.73e-128 | 384 |
Msa0083830 | MtrunA17_Chr4g0043311 | 41.683 | 499 | 278 | 7 | 30 | 525 | 9 | 497 | 2.54e-127 | 380 |
Msa0083830 | MtrunA17_Chr4g0043301 | 41.553 | 515 | 283 | 9 | 14 | 525 | 1 | 500 | 1.10e-124 | 374 |
Msa0083830 | MtrunA17_Chr5g0400361 | 30.000 | 410 | 255 | 11 | 30 | 430 | 79 | 465 | 3.51e-47 | 172 |
Msa0083830 | MtrunA17_Chr1g0206791 | 26.761 | 497 | 319 | 12 | 30 | 513 | 18 | 482 | 1.12e-46 | 170 |
Msa0083830 | MtrunA17_Chr6g0463101 | 28.081 | 495 | 313 | 15 | 21 | 511 | 99 | 554 | 1.14e-45 | 168 |
Msa0083830 | MtrunA17_Chr1g0202291 | 27.778 | 486 | 309 | 15 | 30 | 511 | 105 | 552 | 2.82e-44 | 164 |
Msa0083830 | MtrunA17_Chr1g0188101 | 26.653 | 499 | 312 | 12 | 30 | 508 | 91 | 555 | 9.91e-44 | 163 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083830 | AT3G52990.1 | 81.404 | 527 | 97 | 1 | 1 | 526 | 1 | 527 | 0.0 | 911 |
Msa0083830 | AT2G36580.1 | 80.455 | 527 | 102 | 1 | 1 | 526 | 1 | 527 | 0.0 | 895 |
Msa0083830 | AT3G52990.2 | 82.068 | 474 | 84 | 1 | 54 | 526 | 1 | 474 | 0.0 | 830 |
Msa0083830 | AT5G63680.3 | 43.030 | 495 | 269 | 7 | 30 | 521 | 22 | 506 | 5.33e-128 | 383 |
Msa0083830 | AT5G63680.1 | 43.030 | 495 | 269 | 7 | 30 | 521 | 22 | 506 | 5.33e-128 | 383 |
Msa0083830 | AT5G63680.2 | 43.030 | 495 | 269 | 7 | 30 | 521 | 22 | 506 | 5.33e-128 | 383 |
Msa0083830 | AT5G08570.1 | 43.232 | 495 | 268 | 9 | 30 | 521 | 22 | 506 | 5.69e-127 | 380 |
Msa0083830 | AT5G08570.2 | 43.232 | 495 | 268 | 9 | 30 | 521 | 22 | 506 | 5.69e-127 | 380 |
Msa0083830 | AT5G08570.3 | 43.232 | 495 | 268 | 9 | 30 | 521 | 22 | 506 | 5.69e-127 | 380 |
Msa0083830 | AT5G56350.1 | 42.540 | 496 | 272 | 8 | 30 | 522 | 10 | 495 | 8.16e-126 | 377 |
Msa0083830 | AT4G26390.1 | 40.882 | 499 | 282 | 7 | 30 | 525 | 9 | 497 | 2.13e-121 | 366 |
Msa0083830 | AT3G04050.1 | 40.637 | 502 | 283 | 8 | 30 | 525 | 18 | 510 | 5.50e-120 | 363 |
Msa0083830 | AT3G55650.1 | 41.036 | 502 | 281 | 7 | 30 | 525 | 18 | 510 | 2.10e-117 | 356 |
Msa0083830 | AT3G25960.1 | 40.882 | 499 | 273 | 8 | 30 | 525 | 18 | 497 | 6.43e-116 | 352 |
Msa0083830 | AT3G55810.1 | 38.247 | 502 | 277 | 8 | 30 | 525 | 18 | 492 | 1.83e-103 | 320 |
Msa0083830 | AT1G32440.1 | 30.332 | 422 | 267 | 11 | 30 | 448 | 101 | 498 | 1.07e-47 | 174 |
Msa0083830 | AT5G52920.1 | 29.227 | 414 | 272 | 12 | 21 | 431 | 104 | 499 | 8.10e-43 | 161 |
Msa0083830 | AT3G22960.1 | 25.852 | 499 | 314 | 13 | 30 | 508 | 119 | 581 | 4.14e-40 | 154 |
Find 134 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTACATCACTCTAATT+AGG | 0.115031 | 1_2:+62975812 | None:intergenic |
GACATTCACCGGTGCCTTTC+AGG | 0.125937 | 1_2:-62976247 | Msa0083830:CDS |
AAGAGACATTGGAAAATTTA+AGG | 0.150763 | 1_2:-62979815 | Msa0083830:CDS |
CATTGTCTCTCGTGGAAATT+TGG | 0.157630 | 1_2:-62977735 | Msa0083830:CDS |
CTGCTTGAGGTCTTCAAATT+TGG | 0.167564 | 1_2:+62977972 | None:intergenic |
CTGACGAGTCACCAACTTTC+TGG | 0.209286 | 1_2:+62975890 | None:intergenic |
CTTGGGGCAGAGACCCTTAC+TGG | 0.238060 | 1_2:-62977139 | Msa0083830:CDS |
AATGTCTCTTGGTGGTATTC+TGG | 0.238537 | 1_2:+62979828 | None:intergenic |
ATCGGTAAATATCTGTTTAC+AGG | 0.257297 | 1_2:-62979286 | Msa0083830:CDS |
GAAAGGCCGCTAAAATTTAC+TGG | 0.264525 | 1_2:+62979463 | None:intergenic |
TGCTTCTTGAGGAACCTATT+AGG | 0.292663 | 1_2:-62981277 | Msa0083830:CDS |
TTAGACCATGGCAAGGCTTT+TGG | 0.295423 | 1_2:-62975946 | Msa0083830:CDS |
TTATTCACGACTTGTAATTC+TGG | 0.303358 | 1_2:+62979571 | None:intergenic |
CATCACTGGTTAATTTGTTT+AGG | 0.303785 | 1_2:-62981350 | Msa0083830:five_prime_UTR |
CTATTACATCACTCTAATTA+GGG | 0.309353 | 1_2:+62975813 | None:intergenic |
GTAGCTTCTTTGTTCTGATC+TGG | 0.328901 | 1_2:+62979499 | None:intergenic |
CTGGTTAATTTGTTTAGGTT+TGG | 0.330385 | 1_2:-62981345 | Msa0083830:five_prime_UTR |
ATTGTCTCTCGTGGAAATTT+GGG | 0.332252 | 1_2:-62977734 | Msa0083830:CDS |
GTGTCTGCTTCAAGGGTAAT+TGG | 0.332260 | 1_2:+62979538 | None:intergenic |
AGAGACATTGGAAAATTTAA+GGG | 0.372740 | 1_2:-62979814 | Msa0083830:CDS |
GTGCAGGCCGAATCGAATAC+TGG | 0.373754 | 1_2:-62975997 | Msa0083830:intron |
CGATGTTGCCAATGCGGTAT+TGG | 0.382976 | 1_2:-62977395 | Msa0083830:CDS |
AGGATGGAAGCCATCCTAAT+AGG | 0.392259 | 1_2:+62981263 | None:intergenic |
ACCACGCGTGTGACAACAAC+GGG | 0.392637 | 1_2:+62977463 | None:intergenic |
ATCATCTGCTTCACCTCATC+TGG | 0.394382 | 1_2:-62976586 | Msa0083830:CDS |
GATGGAGATACTGACAGGTT+TGG | 0.408779 | 1_2:+62981232 | None:intergenic |
TAAGAAGACTGTCAAATTTG+TGG | 0.413491 | 1_2:-62976785 | Msa0083830:CDS |
AAGAAGACTGTCAAATTTGT+GGG | 0.415739 | 1_2:-62976784 | Msa0083830:CDS |
GCAGTGATGCAATTCTCCTT+GGG | 0.424846 | 1_2:-62977156 | Msa0083830:CDS |
GTCCAGCCCTTTGCTTCTTG+AGG | 0.431172 | 1_2:-62981288 | Msa0083830:CDS |
TCGAGCAGCCGTCAAGGTTA+AGG | 0.439602 | 1_2:-62976617 | Msa0083830:CDS |
TCACCGGTGCCTTTCAGGCT+CGG | 0.445968 | 1_2:-62976242 | Msa0083830:CDS |
TTGCACGGTTTGACTTCTCA+TGG | 0.446494 | 1_2:-62979857 | Msa0083830:CDS |
AAGTAGATACCAACCTTCTC+AGG | 0.448375 | 1_2:+62977698 | None:intergenic |
CAAGTGATGTGTCTGCTTCA+AGG | 0.449834 | 1_2:+62979530 | None:intergenic |
GGCAGTGATGCAATTCTCCT+TGG | 0.450255 | 1_2:-62977157 | Msa0083830:CDS |
ACTGTAGAAATGGTTTCTAC+AGG | 0.450667 | 1_2:+62977109 | None:intergenic |
AGTTGATTTGTCTTCAATTG+AGG | 0.452233 | 1_2:+62976276 | None:intergenic |
TGCCTTGATGCAGGAATGTC+TGG | 0.456273 | 1_2:-62980395 | Msa0083830:intron |
AATAGTATCACCCTTCTTCA+CGG | 0.459621 | 1_2:+62979312 | None:intergenic |
ATCAAATGAATCAATCTTGA+AGG | 0.460016 | 1_2:-62975974 | Msa0083830:CDS |
GATTATGCAGGCCGTGAAGA+AGG | 0.462451 | 1_2:-62979323 | Msa0083830:intron |
ATTTCTCTCTCCTTCATCAC+TGG | 0.462864 | 1_2:-62981364 | Msa0083830:five_prime_UTR |
GTAGAAACCATTTCTACAGT+TGG | 0.470386 | 1_2:-62977106 | Msa0083830:CDS |
TCTTCCTACTCTTACTGATA+AGG | 0.470694 | 1_2:-62978694 | Msa0083830:CDS |
TGTCTGCTTCAAGGGTAATT+GGG | 0.470997 | 1_2:+62979539 | None:intergenic |
TCGAACATCTTCAGCGTGCC+GGG | 0.473885 | 1_2:+62978203 | None:intergenic |
GTCGAACATCTTCAGCGTGC+CGG | 0.475089 | 1_2:+62978202 | None:intergenic |
TGCACGGTTTGACTTCTCAT+GGG | 0.475448 | 1_2:-62979856 | Msa0083830:CDS |
ATTTGATCCAGTATTCGATT+CGG | 0.478935 | 1_2:+62975990 | None:intergenic |
AACAGATGCCTTAACCTTGA+CGG | 0.480991 | 1_2:+62976609 | None:intergenic |
AACAAATTAACCAGTGATGA+AGG | 0.487622 | 1_2:+62981354 | None:intergenic |
AAGTGATGTGTCTGCTTCAA+GGG | 0.505911 | 1_2:+62979531 | None:intergenic |
TGTCGAGGATCCGCCAGCAT+AGG | 0.508898 | 1_2:+62976192 | None:intergenic |
GAAGTGAAACAACTTCTGTA+TGG | 0.510806 | 1_2:-62979264 | Msa0083830:CDS |
ACATTCCTGCATCAAGGCAT+CGG | 0.512212 | 1_2:+62980399 | None:intergenic |
TCTTACTGATAAGGATAAAG+AGG | 0.518845 | 1_2:-62978685 | Msa0083830:intron |
TTCCTCAAGAAGCAAAGGGC+TGG | 0.521311 | 1_2:+62981286 | None:intergenic |
AAGTGACTGCCGAGCCTGAA+AGG | 0.521502 | 1_2:+62976233 | None:intergenic |
GTCGAGGATCCGCCAGCATA+GGG | 0.522821 | 1_2:+62976193 | None:intergenic |
CATTCCTGCATCAAGGCATC+GGG | 0.523891 | 1_2:+62980400 | None:intergenic |
ATTACCCGATGCCTTGATGC+AGG | 0.526566 | 1_2:-62980404 | Msa0083830:CDS |
CAAATTTGGAGAAATATTCA+CGG | 0.527033 | 1_2:+62977986 | None:intergenic |
CTACAGGGTATAATCCAGTA+AGG | 0.529033 | 1_2:+62977125 | None:intergenic |
CTGCTTCACCTCATCTGGAA+GGG | 0.535094 | 1_2:-62976581 | Msa0083830:CDS |
ATTTATAAGTGTAACATGGC+GGG | 0.535820 | 1_2:-62977490 | Msa0083830:CDS |
AAATTTGGAGAAATATTCAC+GGG | 0.536430 | 1_2:+62977987 | None:intergenic |
CCTCATCTGGAAGGGCTGCA+AGG | 0.537274 | 1_2:-62976573 | Msa0083830:intron |
TAGGTTCCTCAAGAAGCAAA+GGG | 0.537810 | 1_2:+62981282 | None:intergenic |
TGACAGGTTTGGATGGCTCT+AGG | 0.546806 | 1_2:+62981243 | None:intergenic |
TCTTGAGGAACCTATTAGGA+TGG | 0.548539 | 1_2:-62981273 | Msa0083830:CDS |
ATAGGTTCCTCAAGAAGCAA+AGG | 0.550497 | 1_2:+62981281 | None:intergenic |
AGAATACCACCAAGAGACAT+TGG | 0.551827 | 1_2:-62979826 | Msa0083830:CDS |
AGGTTTGGATGGCTCTAGGA+TGG | 0.555270 | 1_2:+62981247 | None:intergenic |
TTGAAGGTTGCTTTAGACCA+TGG | 0.555702 | 1_2:-62975958 | Msa0083830:CDS |
ATTGATTCCATGTGGCTCAT+CGG | 0.557927 | 1_2:+62976757 | None:intergenic |
CTGCCGAGCCTGAAAGGCAC+CGG | 0.563741 | 1_2:+62976239 | None:intergenic |
TGCAAAGATCGAAAATGTAG+AGG | 0.564673 | 1_2:-62977938 | Msa0083830:intron |
ATCATTCTTACAGGGTGTCG+AGG | 0.564881 | 1_2:+62976177 | None:intergenic |
TCTGCTTCACCTCATCTGGA+AGG | 0.565181 | 1_2:-62976582 | Msa0083830:CDS |
TACCAGACATTCCTGCATCA+AGG | 0.565424 | 1_2:+62980393 | None:intergenic |
ACAGATATCACAGGCATGGT+TGG | 0.565703 | 1_2:+62976306 | None:intergenic |
CTGTAGAAATGGTTTCTACA+GGG | 0.567154 | 1_2:+62977110 | None:intergenic |
ATTATGCAGGCCGTGAAGAA+GGG | 0.567518 | 1_2:-62979322 | Msa0083830:intron |
ATACAGGTCAGCGAGGTGAA+TGG | 0.567535 | 1_2:-62978801 | Msa0083830:intron |
GATGGTATCATTGTCTCTCG+TGG | 0.568066 | 1_2:-62977743 | Msa0083830:CDS |
AACTTAGGTAATACGCACAT+GGG | 0.571273 | 1_2:-62978262 | Msa0083830:intron |
ATTACCATCCAATACCGCAT+TGG | 0.572130 | 1_2:+62977387 | None:intergenic |
GATAGATCTCCCACCTGAGA+AGG | 0.574401 | 1_2:-62977711 | Msa0083830:intron |
CAACTCCGATGGACATTCAC+CGG | 0.575309 | 1_2:-62976258 | Msa0083830:CDS |
GTTGTTGTTTGCCAGAAAGT+TGG | 0.576382 | 1_2:-62975901 | Msa0083830:CDS |
GAGATACTGACAGGTTTGGA+TGG | 0.577564 | 1_2:+62981236 | None:intergenic |
TGAAGACAAATCAACTCCGA+TGG | 0.584693 | 1_2:-62976269 | Msa0083830:CDS |
CCTTGCAGCCCTTCCAGATG+AGG | 0.586363 | 1_2:+62976573 | None:intergenic |
TTATCCTTATCAGTAAGAGT+AGG | 0.591542 | 1_2:+62978690 | None:intergenic |
TGATGCCAAAAGCCTTGCCA+TGG | 0.594137 | 1_2:+62975941 | None:intergenic |
CTTACCATATGCCAGTTGCA+CGG | 0.596871 | 1_2:-62979872 | Msa0083830:intron |
CGGCAGTCACTTATTGTGAG+AGG | 0.598163 | 1_2:-62976222 | Msa0083830:CDS |
ACAGGTTCGAGCAGCCGTCA+AGG | 0.598249 | 1_2:-62976623 | Msa0083830:intron |
CTTTCTGGCAAACAACAACT+CGG | 0.599279 | 1_2:+62975905 | None:intergenic |
CAATACCGCATTGGCAACAT+CGG | 0.602302 | 1_2:+62977396 | None:intergenic |
TAGATACCAACCTTCTCAGG+TGG | 0.602698 | 1_2:+62977701 | None:intergenic |
GCACGGTTTGACTTCTCATG+GGG | 0.608536 | 1_2:-62979855 | Msa0083830:CDS |
AAGGTAGACTGACCTTTGAA+AGG | 0.609390 | 1_2:+62979446 | None:intergenic |
GAGATATTGAGAGAAGCAGA+TGG | 0.612258 | 1_2:-62977761 | Msa0083830:CDS |
TTGTCTCTCGTGGAAATTTG+GGG | 0.612945 | 1_2:-62977733 | Msa0083830:CDS |
GCCCGTTGTTGTCACACGCG+TGG | 0.617467 | 1_2:-62977464 | Msa0083830:CDS |
AGGCACCGGTGAATGTCCAT+CGG | 0.624053 | 1_2:+62976253 | None:intergenic |
GGTTGCTTTAGACCATGGCA+AGG | 0.624133 | 1_2:-62975953 | Msa0083830:CDS |
ACTTAGGTAATACGCACATG+GGG | 0.626722 | 1_2:-62978261 | Msa0083830:intron |
TAACTTAGGTAATACGCACA+TGG | 0.628609 | 1_2:-62978263 | Msa0083830:intron |
GACGACAGATATCACAGGCA+TGG | 0.630625 | 1_2:+62976302 | None:intergenic |
CAGGTTATGCTAGATACTGT+AGG | 0.633111 | 1_2:-62979595 | Msa0083830:CDS |
CAGTAAGGGTCTCTGCCCCA+AGG | 0.637264 | 1_2:+62977140 | None:intergenic |
TACAGGGTATAATCCAGTAA+GGG | 0.637369 | 1_2:+62977126 | None:intergenic |
GGGAGAGCCGATGAGCCACA+TGG | 0.643980 | 1_2:-62976764 | Msa0083830:CDS |
TCGGTTGCTTCAGCACGAGT+AGG | 0.643981 | 1_2:+62977415 | None:intergenic |
AACAACTTCTGTATGGCTAG+AGG | 0.646199 | 1_2:-62979257 | Msa0083830:intron |
GTTGCCAATGCGGTATTGGA+TGG | 0.648763 | 1_2:-62977391 | Msa0083830:intron |
AGATACCAACCTTCTCAGGT+GGG | 0.649922 | 1_2:+62977702 | None:intergenic |
CAAACAACAACTCGGTCATG+TGG | 0.652383 | 1_2:+62975913 | None:intergenic |
CAGTGATGCAATTCTCCTTG+GGG | 0.653565 | 1_2:-62977155 | Msa0083830:CDS |
ACTTCCTCTCATTATACACC+CGG | 0.654885 | 1_2:-62978221 | Msa0083830:CDS |
TGCTATTTATAAGTGTAACA+TGG | 0.661564 | 1_2:-62977494 | Msa0083830:CDS |
GACCACGCGTGTGACAACAA+CGG | 0.662133 | 1_2:+62977462 | None:intergenic |
AGCAACCGATGTTGCCAATG+CGG | 0.662779 | 1_2:-62977401 | Msa0083830:CDS |
CGTGCCGGGTGTATAATGAG+AGG | 0.669231 | 1_2:+62978217 | None:intergenic |
TATTTATAAGTGTAACATGG+CGG | 0.681522 | 1_2:-62977491 | Msa0083830:CDS |
CTTAGGTAATACGCACATGG+GGG | 0.693230 | 1_2:-62978260 | Msa0083830:intron |
TTAGGTAATACGCACATGGG+GGG | 0.704480 | 1_2:-62978259 | Msa0083830:intron |
GGAATGACGACAGATATCAC+AGG | 0.710120 | 1_2:+62976297 | None:intergenic |
AGGAAGCTATTGATTCCATG+TGG | 0.726968 | 1_2:+62976749 | None:intergenic |
TGGTGAGAAATGTACTGCAG+AGG | 0.726978 | 1_2:+62976729 | None:intergenic |
TTTCACAATACAGGTCAGCG+AGG | 0.765838 | 1_2:-62978808 | Msa0083830:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTCATGTTTTTTTTTTTT+TGG | - | chr1_2:62975913-62975932 | Msa0083830:CDS | 10.0% |
!! | AAAAATACAAATAAACAAAA+TGG | + | chr1_2:62979462-62979481 | None:intergenic | 10.0% |
!!! | TTTATTTTTTTATGTTATGT+AGG | - | chr1_2:62980754-62980773 | Msa0083830:intron | 10.0% |
!!! | ATATATATAAGTTGAATAAG+AGG | - | chr1_2:62976949-62976968 | Msa0083830:intron | 15.0% |
!!! | AAAAGTATTTAATAACACAA+CGG | + | chr1_2:62977943-62977962 | None:intergenic | 15.0% |
!! | TAATTCAGTTATAACTTATA+AGG | - | chr1_2:62977980-62977999 | Msa0083830:CDS | 15.0% |
!! | AATTCAGTTATAACTTATAA+GGG | - | chr1_2:62977981-62978000 | Msa0083830:CDS | 15.0% |
!!! | GGAAAATAGATTATTTTTTT+TGG | - | chr1_2:62978601-62978620 | Msa0083830:intron | 15.0% |
!!! | AATTTTTTGTCTTTTATATC+AGG | - | chr1_2:62979923-62979942 | Msa0083830:intron | 15.0% |
!!! | ATGATTTTATCATTACATTA+TGG | - | chr1_2:62980205-62980224 | Msa0083830:intron | 15.0% |
!!! | CATGTTTTTTTTTTTTTGGT+TGG | - | chr1_2:62975917-62975936 | Msa0083830:CDS | 20.0% |
!!! | CTTTTCTTGATGTAAATAAT+TGG | - | chr1_2:62975950-62975969 | Msa0083830:CDS | 20.0% |
!! | TGTAAATAATTGGTATTATG+AGG | - | chr1_2:62975960-62975979 | Msa0083830:CDS | 20.0% |
!!! | AATAAATTGAAATCAGCTTT+TGG | - | chr1_2:62976330-62976349 | Msa0083830:intron | 20.0% |
!! | ATGTAAGTAATTTACTCTTT+AGG | - | chr1_2:62976449-62976468 | Msa0083830:intron | 20.0% |
!!! | CAATGAATGAAATGTTTTAA+TGG | + | chr1_2:62976739-62976758 | None:intergenic | 20.0% |
!!! | TTTGTTCATAAGTTGATTAT+AGG | - | chr1_2:62976768-62976787 | Msa0083830:CDS | 20.0% |
!! | TCACAAGTAACAAAATTTAT+TGG | - | chr1_2:62977014-62977033 | Msa0083830:intron | 20.0% |
!!! | ATTTTCTCCAAGTTATTTTT+TGG | - | chr1_2:62978123-62978142 | Msa0083830:intron | 20.0% |
!! | TAACAAATGTAAAACTGATT+TGG | - | chr1_2:62978699-62978718 | Msa0083830:CDS | 20.0% |
!!! | TTCTTCTCTAAAATTCATAT+AGG | - | chr1_2:62979300-62979319 | Msa0083830:CDS | 20.0% |
!!! | TCTTCTCTAAAATTCATATA+GGG | - | chr1_2:62979301-62979320 | Msa0083830:CDS | 20.0% |
!!! | ATTTGTATTTTTTAGTGTCA+CGG | - | chr1_2:62979470-62979489 | Msa0083830:CDS | 20.0% |
!! | AAATTCATACATACATATTC+AGG | + | chr1_2:62979562-62979581 | None:intergenic | 20.0% |
!!! | AATTTTAATTGCGAAAAGTA+TGG | + | chr1_2:62980073-62980092 | None:intergenic | 20.0% |
!!! | TAATTTGTTAAGATATTCTG+TGG | - | chr1_2:62980159-62980178 | Msa0083830:intron | 20.0% |
!!! | TGAGAAGTCTTTTTAATAAA+GGG | + | chr1_2:62980582-62980601 | None:intergenic | 20.0% |
!!! | ATGAGAAGTCTTTTTAATAA+AGG | + | chr1_2:62980583-62980602 | None:intergenic | 20.0% |
!! | TACATTTAATCATTCTTACA+GGG | + | chr1_2:62980935-62980954 | None:intergenic | 20.0% |
!! | TTACATTTAATCATTCTTAC+AGG | + | chr1_2:62980936-62980955 | None:intergenic | 20.0% |
!!! | TCATATAGTGTTGTTATATA+TGG | - | chr1_2:62980958-62980977 | Msa0083830:intron | 20.0% |
!!! | CATATAGTGTTGTTATATAT+GGG | - | chr1_2:62980959-62980978 | Msa0083830:intron | 20.0% |
!!! | ATATAGTGTTGTTATATATG+GGG | - | chr1_2:62980960-62980979 | Msa0083830:intron | 20.0% |
! | TAAATAAATGAAGAGAGAGA+TGG | + | chr1_2:62975890-62975909 | None:intergenic | 25.0% |
! | GTCTATTTATGATTAGAGAT+GGG | - | chr1_2:62976422-62976441 | Msa0083830:intron | 25.0% |
! | TCTATTTATGATTAGAGATG+GGG | - | chr1_2:62976423-62976442 | Msa0083830:intron | 25.0% |
! | CAAAACAAATGTGAAAAACA+AGG | + | chr1_2:62976481-62976500 | None:intergenic | 25.0% |
!!! | CTTGTTTTTCACATTTGTTT+TGG | - | chr1_2:62976479-62976498 | Msa0083830:intron | 25.0% |
! | AAAGAGACAGTTAAAAATGA+AGG | + | chr1_2:62976827-62976846 | None:intergenic | 25.0% |
! | AAGTTGAATAAGAGGATAAA+TGG | - | chr1_2:62976957-62976976 | Msa0083830:intron | 25.0% |
! | TGTAAATAACCTTAGCTAAA+TGG | - | chr1_2:62977057-62977076 | Msa0083830:intron | 25.0% |
! | TCTTCTGTTATAATTTGGAT+TGG | - | chr1_2:62977153-62977172 | Msa0083830:CDS | 25.0% |
!! | TTAAATTTTCCAATGTCTCT+TGG | + | chr1_2:62977287-62977306 | None:intergenic | 25.0% |
! | AAGAGACATTGGAAAATTTA+AGG | - | chr1_2:62977286-62977305 | Msa0083830:intron | 25.0% |
! | AGAGACATTGGAAAATTTAA+GGG | - | chr1_2:62977287-62977306 | Msa0083830:intron | 25.0% |
! | GACATACTATTAAATGATTG+TGG | - | chr1_2:62977384-62977403 | Msa0083830:intron | 25.0% |
!!! | TGATTGTGGTTTTAATACAT+TGG | - | chr1_2:62977398-62977417 | Msa0083830:CDS | 25.0% |
!! | GTAACAATATACATGCATTT+TGG | - | chr1_2:62977475-62977494 | Msa0083830:CDS | 25.0% |
!! | CTATTACCAGTAAATTTTAG+CGG | - | chr1_2:62977632-62977651 | Msa0083830:intron | 25.0% |
!!! | AAGGGTGATACTATTTTTAT+CGG | - | chr1_2:62977797-62977816 | Msa0083830:intron | 25.0% |
! | ATAGGATCCAAAAAATAACT+TGG | + | chr1_2:62978133-62978152 | None:intergenic | 25.0% |
! | AAAATGACTTATCTTTCTGT+TGG | - | chr1_2:62978567-62978586 | Msa0083830:intron | 25.0% |
! | GTACACTTACATTTAATCTT+TGG | + | chr1_2:62978632-62978651 | None:intergenic | 25.0% |
! | AACTATTTACACAATTGATG+AGG | - | chr1_2:62978652-62978671 | Msa0083830:intron | 25.0% |
! | AACTATTTACACAATTGATG+AGG | - | chr1_2:62978652-62978671 | Msa0083830:intron | 25.0% |
! | TTAGTGAGTAAAATGTCAAA+AGG | + | chr1_2:62978821-62978840 | None:intergenic | 25.0% |
!! | GCATTGTTTATGTTTTCTAA+TGG | + | chr1_2:62979074-62979093 | None:intergenic | 25.0% |
! | AAATTTGGAGAAATATTCAC+GGG | + | chr1_2:62979117-62979136 | None:intergenic | 25.0% |
! | CAAATTTGGAGAAATATTCA+CGG | + | chr1_2:62979118-62979137 | None:intergenic | 25.0% |
! | TTTATGATTGTGCTTAATTG+TGG | - | chr1_2:62979262-62979281 | Msa0083830:CDS | 25.0% |
!! | AATAAACAAAATGGAAGCAT+AGG | + | chr1_2:62979453-62979472 | None:intergenic | 25.0% |
! | TATGTATGTATGAATTTGAC+AGG | - | chr1_2:62979565-62979584 | Msa0083830:CDS | 25.0% |
!! | ACTTATAAATAGCAGCTTTT+TGG | + | chr1_2:62979601-62979620 | None:intergenic | 25.0% |
!! | TGCTATTTATAAGTGTAACA+TGG | - | chr1_2:62979607-62979626 | Msa0083830:intron | 25.0% |
! | TATTTATAAGTGTAACATGG+CGG | - | chr1_2:62979610-62979629 | Msa0083830:intron | 25.0% |
! | ACAAAAAAGAACTTAGATGA+GGG | + | chr1_2:62979747-62979766 | None:intergenic | 25.0% |
!! | AATTTTTCCAACTGTAGAAA+TGG | + | chr1_2:62980005-62980024 | None:intergenic | 25.0% |
! | AAATACTGAAAGAAAGAAGA+AGG | + | chr1_2:62980642-62980661 | None:intergenic | 25.0% |
!! | ATTTAGTTTAGTTCCACATT+CGG | - | chr1_2:62980662-62980681 | Msa0083830:intron | 25.0% |
! | AACGATATTAAAACCTCAAT+CGG | - | chr1_2:62980997-62981016 | Msa0083830:intron | 25.0% |
! | ATCAAATGAATCAATCTTGA+AGG | - | chr1_2:62981127-62981146 | Msa0083830:intron | 25.0% |
! | CTATTACATCACTCTAATTA+GGG | + | chr1_2:62981291-62981310 | None:intergenic | 25.0% |
! | TCTATTACATCACTCTAATT+AGG | + | chr1_2:62981292-62981311 | None:intergenic | 25.0% |
!!! | TAAGTTTTTGAGTGACAAAA+TGG | - | chr1_2:62981322-62981341 | Msa0083830:five_prime_UTR | 25.0% |
!!! | ACTATAGTTTTGAACTAGAA+CGG | - | chr1_2:62981381-62981400 | Msa0083830:five_prime_UTR | 25.0% |
AACAAATTAACCAGTGATGA+AGG | + | chr1_2:62975750-62975769 | None:intergenic | 30.0% | |
!! | CATCACTGGTTAATTTGTTT+AGG | - | chr1_2:62975751-62975770 | Msa0083830:three_prime_UTR | 30.0% |
!! | CTGGTTAATTTGTTTAGGTT+TGG | - | chr1_2:62975756-62975775 | Msa0083830:three_prime_UTR | 30.0% |
!!! | AAATGCTAGTGTAGTTTTGT+TGG | - | chr1_2:62976046-62976065 | Msa0083830:intron | 30.0% |
TTCAAGATCAATCTATGTCA+AGG | + | chr1_2:62976139-62976158 | None:intergenic | 30.0% | |
AGAATGACAATGCTTATGTT+TGG | + | chr1_2:62976275-62976294 | None:intergenic | 30.0% | |
CCAAATAATAATGCAACAAC+TGG | + | chr1_2:62976360-62976379 | None:intergenic | 30.0% | |
CCAGTTGTTGCATTATTATT+TGG | - | chr1_2:62976357-62976376 | Msa0083830:intron | 30.0% | |
CGTCTATTTATGATTAGAGA+TGG | - | chr1_2:62976421-62976440 | Msa0083830:intron | 30.0% | |
CTATTTATGATTAGAGATGG+GGG | - | chr1_2:62976424-62976443 | Msa0083830:intron | 30.0% | |
CAAGAGAACTACTAAAAGAA+AGG | - | chr1_2:62976507-62976526 | Msa0083830:intron | 30.0% | |
! | CCTATAATTTTTGTCATAGC+TGG | + | chr1_2:62976643-62976662 | None:intergenic | 30.0% |
CCAGCTATGACAAAAATTAT+AGG | - | chr1_2:62976640-62976659 | Msa0083830:intron | 30.0% | |
ACAAAAATTATAGGCACACT+TGG | - | chr1_2:62976649-62976668 | Msa0083830:intron | 30.0% | |
AAGTGCAGTAAATCTGATAA+AGG | + | chr1_2:62976798-62976817 | None:intergenic | 30.0% | |
AAGAGGATAAATGGTATTAC+AGG | - | chr1_2:62976966-62976985 | Msa0083830:intron | 30.0% | |
ATAACCTTAGCTAAATGGAA+TGG | - | chr1_2:62977062-62977081 | Msa0083830:intron | 30.0% | |
GCTGTTCTTCTGTTATAATT+TGG | - | chr1_2:62977148-62977167 | Msa0083830:CDS | 30.0% | |
TGCACGTATGGAAAATAAAT+TGG | + | chr1_2:62977431-62977450 | None:intergenic | 30.0% | |
!!! | ATGCATTTTGGTTCAATTAC+AGG | - | chr1_2:62977487-62977506 | Msa0083830:CDS | 30.0% |
TTATTCACGACTTGTAATTC+TGG | + | chr1_2:62977533-62977552 | None:intergenic | 30.0% | |
TAAACATGTGATCCAACAAA+TGG | + | chr1_2:62977684-62977703 | None:intergenic | 30.0% | |
! | CATGGCTAATATGAAAGTAT+TGG | + | chr1_2:62977711-62977730 | None:intergenic | 30.0% |
CATTGTAGTACACATTATCA+TGG | + | chr1_2:62977729-62977748 | None:intergenic | 30.0% | |
GTGATTATCTCCTTTAACTA+AGG | - | chr1_2:62977748-62977767 | Msa0083830:CDS | 30.0% | |
ATCATGGATACCTTAGTTAA+AGG | + | chr1_2:62977761-62977780 | None:intergenic | 30.0% | |
ATCGGTAAATATCTGTTTAC+AGG | - | chr1_2:62977815-62977834 | Msa0083830:intron | 30.0% | |
CAGACATAGTTCAATCTTTA+AGG | - | chr1_2:62977872-62977891 | Msa0083830:intron | 30.0% | |
GTTATAACTGAATTACCCTA+AGG | + | chr1_2:62977975-62977994 | None:intergenic | 30.0% | |
AGGAAATTTGGTAGACTTAT+AGG | + | chr1_2:62978151-62978170 | None:intergenic | 30.0% | |
GCGAATATAAGAAGGAAATT+TGG | + | chr1_2:62978163-62978182 | None:intergenic | 30.0% | |
!! | ATATTCGCAGTTAGCTTTAA+AGG | - | chr1_2:62978175-62978194 | Msa0083830:intron | 30.0% |
AAGGTAGCATTATATGAAAC+AGG | - | chr1_2:62978194-62978213 | Msa0083830:intron | 30.0% | |
! | TTTTGTACTCTAAGTGTAAG+TGG | - | chr1_2:62978264-62978283 | Msa0083830:intron | 30.0% |
TTATCCTTATCAGTAAGAGT+AGG | + | chr1_2:62978414-62978433 | None:intergenic | 30.0% | |
TCTTACTGATAAGGATAAAG+AGG | - | chr1_2:62978416-62978435 | Msa0083830:intron | 30.0% | |
GTAGTGAAATTGACATAATG+TGG | - | chr1_2:62978464-62978483 | Msa0083830:intron | 30.0% | |
! | TTTCTGTTGGTCTGTAAATA+TGG | - | chr1_2:62978580-62978599 | Msa0083830:intron | 30.0% |
TGCAATTCGTGATTGTATAA+TGG | + | chr1_2:62978729-62978748 | None:intergenic | 30.0% | |
! | GACATTTTACTCACTAACTT+AGG | - | chr1_2:62978824-62978843 | Msa0083830:intron | 30.0% |
AGCAGAAAGTCTATTGTTTA+GGG | + | chr1_2:62979205-62979224 | None:intergenic | 30.0% | |
AAGCAGAAAGTCTATTGTTT+AGG | + | chr1_2:62979206-62979225 | None:intergenic | 30.0% | |
! | TAACATCAGATTTTTCTGAC+CGG | + | chr1_2:62979429-62979448 | None:intergenic | 30.0% |
ATTTATAAGTGTAACATGGC+GGG | - | chr1_2:62979611-62979630 | Msa0083830:intron | 30.0% | |
AAAAAAGAACTTAGATGAGG+GGG | + | chr1_2:62979745-62979764 | None:intergenic | 30.0% | |
CAAAAAAGAACTTAGATGAG+GGG | + | chr1_2:62979746-62979765 | None:intergenic | 30.0% | |
GACAAAAAAGAACTTAGATG+AGG | + | chr1_2:62979748-62979767 | None:intergenic | 30.0% | |
TTTGTCGTATTTGAATAGTC+CGG | - | chr1_2:62979762-62979781 | Msa0083830:intron | 30.0% | |
! | TTAATTGCGAAAAGTATGGT+AGG | + | chr1_2:62980069-62980088 | None:intergenic | 30.0% |
GTATGACAAGAATACAAACA+AGG | + | chr1_2:62980139-62980158 | None:intergenic | 30.0% | |
TAAGAAGACTGTCAAATTTG+TGG | - | chr1_2:62980316-62980335 | Msa0083830:intron | 30.0% | |
AAGAAGACTGTCAAATTTGT+GGG | - | chr1_2:62980317-62980336 | Msa0083830:intron | 30.0% | |
GCAAGTGAATAGAATAATGT+TGG | + | chr1_2:62980395-62980414 | None:intergenic | 30.0% | |
TATTCTATTCACTTGCTCAA+AGG | - | chr1_2:62980399-62980418 | Msa0083830:CDS | 30.0% | |
ATTCTATTCACTTGCTCAAA+GGG | - | chr1_2:62980400-62980419 | Msa0083830:CDS | 30.0% | |
! | TTCTTTTTCCTGAAACATAC+AGG | - | chr1_2:62980460-62980479 | Msa0083830:CDS | 30.0% |
!! | AGTTGATTTGTCTTCAATTG+AGG | + | chr1_2:62980828-62980847 | None:intergenic | 30.0% |
ACGATATTAAAACCTCAATC+GGG | - | chr1_2:62980998-62981017 | Msa0083830:intron | 30.0% | |
ATTTGATCCAGTATTCGATT+CGG | + | chr1_2:62981114-62981133 | None:intergenic | 30.0% | |
TTCAACTTGATCTACCATAC+TGG | + | chr1_2:62976026-62976045 | None:intergenic | 35.0% | |
!!! | ACTTTTGAAGTGGTCCAAAT+TGG | + | chr1_2:62976248-62976267 | None:intergenic | 35.0% |
!! | GTTTGGTTTCACTTTTGAAG+TGG | + | chr1_2:62976258-62976277 | None:intergenic | 35.0% |
! | AATTTTCCAATGTCTCTTGG+TGG | + | chr1_2:62977284-62977303 | None:intergenic | 35.0% |
TACACTAATTACCCTTCAGA+AGG | + | chr1_2:62977458-62977477 | None:intergenic | 35.0% | |
!! | AAATTTTAGCGGCCTTTCAA+AGG | - | chr1_2:62977643-62977662 | Msa0083830:intron | 35.0% |
! | GTCTACCTTTTTCCATTTGT+TGG | - | chr1_2:62977669-62977688 | Msa0083830:intron | 35.0% |
GTGATCCAACAAATGGAAAA+AGG | + | chr1_2:62977677-62977696 | None:intergenic | 35.0% | |
! | TAAGGTATCCATGATTATGC+AGG | - | chr1_2:62977766-62977785 | Msa0083830:CDS | 35.0% |
AATAGTATCACCCTTCTTCA+CGG | + | chr1_2:62977792-62977811 | None:intergenic | 35.0% | |
GAAGTGAAACAACTTCTGTA+TGG | - | chr1_2:62977837-62977856 | Msa0083830:intron | 35.0% | |
! | TACTTTTCTTTGACCTCCTT+AGG | - | chr1_2:62977956-62977975 | Msa0083830:CDS | 35.0% |
! | ACTTTTCTTTGACCTCCTTA+GGG | - | chr1_2:62977957-62977976 | Msa0083830:CDS | 35.0% |
ATAACTGAATTACCCTAAGG+AGG | + | chr1_2:62977972-62977991 | None:intergenic | 35.0% | |
CTTGTCAAGTAGAAAGACTA+AGG | + | chr1_2:62978079-62978098 | None:intergenic | 35.0% | |
AGCTAACTGCGAATATAAGA+AGG | + | chr1_2:62978171-62978190 | None:intergenic | 35.0% | |
TGGTATCTGTTTCACAATAC+AGG | - | chr1_2:62978284-62978303 | Msa0083830:intron | 35.0% | |
TCTTCCTACTCTTACTGATA+AGG | - | chr1_2:62978407-62978426 | Msa0083830:intron | 35.0% | |
TAACTTAGGTAATACGCACA+TGG | - | chr1_2:62978838-62978857 | Msa0083830:intron | 35.0% | |
AACTTAGGTAATACGCACAT+GGG | - | chr1_2:62978839-62978858 | Msa0083830:intron | 35.0% | |
TGAAGATGTTCGACATGTAA+GGG | - | chr1_2:62978908-62978927 | Msa0083830:intron | 35.0% | |
! | GTTTATGTTTTCTAATGGCG+AGG | + | chr1_2:62979069-62979088 | None:intergenic | 35.0% |
CAAAAATATGTGTCTGCTTG+AGG | + | chr1_2:62979145-62979164 | None:intergenic | 35.0% | |
TGCAAAGATCGAAAATGTAG+AGG | - | chr1_2:62979163-62979182 | Msa0083830:intron | 35.0% | |
ATTGTCTCTCGTGGAAATTT+GGG | - | chr1_2:62979367-62979386 | Msa0083830:intron | 35.0% | |
TACAGGGTATAATCCAGTAA+GGG | + | chr1_2:62979978-62979997 | None:intergenic | 35.0% | |
CTGTAGAAATGGTTTCTACA+GGG | + | chr1_2:62979994-62980013 | None:intergenic | 35.0% | |
ACTGTAGAAATGGTTTCTAC+AGG | + | chr1_2:62979995-62980014 | None:intergenic | 35.0% | |
GTAGAAACCATTTCTACAGT+TGG | - | chr1_2:62979995-62980014 | Msa0083830:intron | 35.0% | |
!! | TGGTAGGAAGTGTTGTTTAA+AGG | + | chr1_2:62980053-62980072 | None:intergenic | 35.0% |
! | TGTCACTTGTTAGTTATCTG+CGG | - | chr1_2:62980107-62980126 | Msa0083830:intron | 35.0% |
! | AGTGTTGTTATATATGGGGA+AGG | - | chr1_2:62980964-62980983 | Msa0083830:intron | 35.0% |
! | GTGTTGTTATATATGGGGAA+GGG | - | chr1_2:62980965-62980984 | Msa0083830:intron | 35.0% |
!! | GAGGTTTTAATATCGTTCCT+TGG | + | chr1_2:62980994-62981013 | None:intergenic | 35.0% |
!!! | GAATTTGCCTTTTTTTGTGC+AGG | - | chr1_2:62981088-62981107 | Msa0083830:intron | 35.0% |
ATTTCTCTCTCCTTCATCAC+TGG | - | chr1_2:62975737-62975756 | Msa0083830:three_prime_UTR | 40.0% | |
TAGGTTCCTCAAGAAGCAAA+GGG | + | chr1_2:62975822-62975841 | None:intergenic | 40.0% | |
ATAGGTTCCTCAAGAAGCAA+AGG | + | chr1_2:62975823-62975842 | None:intergenic | 40.0% | |
TGCTTCTTGAGGAACCTATT+AGG | - | chr1_2:62975824-62975843 | Msa0083830:three_prime_UTR | 40.0% | |
TCTTGAGGAACCTATTAGGA+TGG | - | chr1_2:62975828-62975847 | Msa0083830:three_prime_UTR | 40.0% | |
! | TGTGTTGTTGTTGTCCAGTA+TGG | - | chr1_2:62976009-62976028 | Msa0083830:intron | 40.0% |
CTTGTCTTCTTCTGTGTGTT+TGG | - | chr1_2:62976108-62976127 | Msa0083830:intron | 40.0% | |
ACCTTAGCTAAATGGAATGG+AGG | - | chr1_2:62977065-62977084 | Msa0083830:intron | 40.0% | |
CCTTAGCTAAATGGAATGGA+GGG | - | chr1_2:62977066-62977085 | Msa0083830:intron | 40.0% | |
ACAAAGACATGCAACTTGCA+AGG | + | chr1_2:62977180-62977199 | None:intergenic | 40.0% | |
! | AATGTCTCTTGGTGGTATTC+TGG | + | chr1_2:62977276-62977295 | None:intergenic | 40.0% |
AGAATACCACCAAGAGACAT+TGG | - | chr1_2:62977275-62977294 | Msa0083830:intron | 40.0% | |
AAGCACAAAAAAACTCTGCG+CGG | - | chr1_2:62977320-62977339 | Msa0083830:intron | 40.0% | |
!! | TCAGAAGGTATTTGCACGTA+TGG | + | chr1_2:62977443-62977462 | None:intergenic | 40.0% |
TACGTGCAAATACCTTCTGA+AGG | - | chr1_2:62977443-62977462 | Msa0083830:CDS | 40.0% | |
ACGTGCAAATACCTTCTGAA+GGG | - | chr1_2:62977444-62977463 | Msa0083830:CDS | 40.0% | |
CAGGTTATGCTAGATACTGT+AGG | - | chr1_2:62977506-62977525 | Msa0083830:CDS | 40.0% | |
TGTCTGCTTCAAGGGTAATT+GGG | + | chr1_2:62977565-62977584 | None:intergenic | 40.0% | |
AAGTGATGTGTCTGCTTCAA+GGG | + | chr1_2:62977573-62977592 | None:intergenic | 40.0% | |
GTAGCTTCTTTGTTCTGATC+TGG | + | chr1_2:62977605-62977624 | None:intergenic | 40.0% | |
GAAAGGCCGCTAAAATTTAC+TGG | + | chr1_2:62977641-62977660 | None:intergenic | 40.0% | |
AAGGTAGACTGACCTTTGAA+AGG | + | chr1_2:62977658-62977677 | None:intergenic | 40.0% | |
AACAACTTCTGTATGGCTAG+AGG | - | chr1_2:62977844-62977863 | Msa0083830:intron | 40.0% | |
AAAAACGATGCGACACTTTC+TGG | - | chr1_2:62978345-62978364 | Msa0083830:intron | 40.0% | |
CATTGATGTAATCAAGCTGC+AGG | + | chr1_2:62978522-62978541 | None:intergenic | 40.0% | |
ACTTAGGTAATACGCACATG+GGG | - | chr1_2:62978840-62978859 | Msa0083830:intron | 40.0% | |
ACTTCCTCTCATTATACACC+CGG | - | chr1_2:62978880-62978899 | Msa0083830:intron | 40.0% | |
CTGAAGATGTTCGACATGTA+AGG | - | chr1_2:62978907-62978926 | Msa0083830:intron | 40.0% | |
GAGAGAACATAAAACGTAGC+AGG | + | chr1_2:62978939-62978958 | None:intergenic | 40.0% | |
CTGCTTGAGGTCTTCAAATT+TGG | + | chr1_2:62979132-62979151 | None:intergenic | 40.0% | |
TGTGAACTACAGCATTTGTC+TGG | + | chr1_2:62979238-62979257 | None:intergenic | 40.0% | |
GAGATATTGAGAGAAGCAGA+TGG | - | chr1_2:62979340-62979359 | Msa0083830:intron | 40.0% | |
CATTGTCTCTCGTGGAAATT+TGG | - | chr1_2:62979366-62979385 | Msa0083830:intron | 40.0% | |
TTGTCTCTCGTGGAAATTTG+GGG | - | chr1_2:62979368-62979387 | Msa0083830:intron | 40.0% | |
AAGTAGATACCAACCTTCTC+AGG | + | chr1_2:62979406-62979425 | None:intergenic | 40.0% | |
!! | AGAAGGTTGGTATCTACTTC+CGG | - | chr1_2:62979407-62979426 | Msa0083830:intron | 40.0% |
ATTACCATCCAATACCGCAT+TGG | + | chr1_2:62979717-62979736 | None:intergenic | 40.0% | |
TCCGGTCTGATCTAAGTTAT+GGG | - | chr1_2:62979780-62979799 | Msa0083830:intron | 40.0% | |
CTACAGGGTATAATCCAGTA+AGG | + | chr1_2:62979979-62979998 | None:intergenic | 40.0% | |
GCAGATAACTAACAAGTGAC+AGG | + | chr1_2:62980108-62980127 | None:intergenic | 40.0% | |
ATTATTCTACTGCACTGTCC+AGG | - | chr1_2:62980262-62980281 | Msa0083830:intron | 40.0% | |
GATTGTAAACTTTCTCTGCC+TGG | + | chr1_2:62980283-62980302 | None:intergenic | 40.0% | |
! | ATTGATTCCATGTGGCTCAT+CGG | + | chr1_2:62980347-62980366 | None:intergenic | 40.0% |
!! | AGGAAGCTATTGATTCCATG+TGG | + | chr1_2:62980355-62980374 | None:intergenic | 40.0% |
AACAGATGCCTTAACCTTGA+CGG | + | chr1_2:62980495-62980514 | None:intergenic | 40.0% | |
ATGACTGTCATATCCGAATG+TGG | + | chr1_2:62980678-62980697 | None:intergenic | 40.0% | |
TGAAGACAAATCAACTCCGA+TGG | - | chr1_2:62980832-62980851 | Msa0083830:intron | 40.0% | |
! | TTGAAGGTTGCTTTAGACCA+TGG | - | chr1_2:62981143-62981162 | Msa0083830:intron | 40.0% |
! | CTTTCTGGCAAACAACAACT+CGG | + | chr1_2:62981199-62981218 | None:intergenic | 40.0% |
!! | GTTGTTGTTTGCCAGAAAGT+TGG | - | chr1_2:62981200-62981219 | Msa0083830:intron | 40.0% |
AGGATGGAAGCCATCCTAAT+AGG | + | chr1_2:62975841-62975860 | None:intergenic | 45.0% | |
GAGATACTGACAGGTTTGGA+TGG | + | chr1_2:62975868-62975887 | None:intergenic | 45.0% | |
GATGGAGATACTGACAGGTT+TGG | + | chr1_2:62975872-62975891 | None:intergenic | 45.0% | |
AGAGAGATGGAGATACTGAC+AGG | + | chr1_2:62975877-62975896 | None:intergenic | 45.0% | |
CTACACCTCCAGAACCAATT+TGG | - | chr1_2:62976231-62976250 | Msa0083830:CDS | 45.0% | |
! | GAAGTGGTCCAAATTGGTTC+TGG | + | chr1_2:62976242-62976261 | None:intergenic | 45.0% |
ACATTCCTGCATCAAGGCAT+CGG | + | chr1_2:62976705-62976724 | None:intergenic | 45.0% | |
TACCAGACATTCCTGCATCA+AGG | + | chr1_2:62976711-62976730 | None:intergenic | 45.0% | |
CCCTCCATTCCATTTAGCTA+AGG | + | chr1_2:62977069-62977088 | None:intergenic | 45.0% | |
ATGGAGGGAGTAACACTTTG+TGG | - | chr1_2:62977081-62977100 | Msa0083830:intron | 45.0% | |
CTTACCATATGCCAGTTGCA+CGG | - | chr1_2:62977229-62977248 | Msa0083830:intron | 45.0% | |
! | TTGCACGGTTTGACTTCTCA+TGG | - | chr1_2:62977244-62977263 | Msa0083830:intron | 45.0% |
! | TGCACGGTTTGACTTCTCAT+GGG | - | chr1_2:62977245-62977264 | Msa0083830:intron | 45.0% |
GTGTCTGCTTCAAGGGTAAT+TGG | + | chr1_2:62977566-62977585 | None:intergenic | 45.0% | |
CAAGTGATGTGTCTGCTTCA+AGG | + | chr1_2:62977574-62977593 | None:intergenic | 45.0% | |
ATTATGCAGGCCGTGAAGAA+GGG | - | chr1_2:62977779-62977798 | Msa0083830:CDS | 45.0% | |
TTTCACAATACAGGTCAGCG+AGG | - | chr1_2:62978293-62978312 | Msa0083830:intron | 45.0% | |
CTTAGGTAATACGCACATGG+GGG | - | chr1_2:62978841-62978860 | Msa0083830:intron | 45.0% | |
TTAGGTAATACGCACATGGG+GGG | - | chr1_2:62978842-62978861 | Msa0083830:intron | 45.0% | |
! | TGCGTCCGATTTTCATTTGC+AGG | - | chr1_2:62979091-62979110 | Msa0083830:intron | 45.0% |
ACGGGCCTGCAAATGAAAAT+CGG | + | chr1_2:62979099-62979118 | None:intergenic | 45.0% | |
GATGGTATCATTGTCTCTCG+TGG | - | chr1_2:62979358-62979377 | Msa0083830:intron | 45.0% | |
AGATACCAACCTTCTCAGGT+GGG | + | chr1_2:62979402-62979421 | None:intergenic | 45.0% | |
TAGATACCAACCTTCTCAGG+TGG | + | chr1_2:62979403-62979422 | None:intergenic | 45.0% | |
AGACGCAGGAATGCTGTAAA+AGG | + | chr1_2:62979515-62979534 | None:intergenic | 45.0% | |
AACGTATACTAGAGAGACGC+AGG | + | chr1_2:62979529-62979548 | None:intergenic | 45.0% | |
! | CAATACCGCATTGGCAACAT+CGG | + | chr1_2:62979708-62979727 | None:intergenic | 45.0% |
GTCCGGTCTGATCTAAGTTA+TGG | - | chr1_2:62979779-62979798 | Msa0083830:intron | 45.0% | |
CCCCATAACTTAGATCAGAC+CGG | + | chr1_2:62979784-62979803 | None:intergenic | 45.0% | |
CCGGTCTGATCTAAGTTATG+GGG | - | chr1_2:62979781-62979800 | Msa0083830:intron | 45.0% | |
GCAGTGATGCAATTCTCCTT+GGG | - | chr1_2:62979945-62979964 | Msa0083830:intron | 45.0% | |
CAGTGATGCAATTCTCCTTG+GGG | - | chr1_2:62979946-62979965 | Msa0083830:intron | 45.0% | |
CTAACAAGTGACAGGATCAC+AGG | + | chr1_2:62980100-62980119 | None:intergenic | 45.0% | |
TGGTGAGAAATGTACTGCAG+AGG | + | chr1_2:62980375-62980394 | None:intergenic | 45.0% | |
TGCTCGAACCTGTATGTTTC+AGG | + | chr1_2:62980471-62980490 | None:intergenic | 45.0% | |
ATCATCTGCTTCACCTCATC+TGG | - | chr1_2:62980515-62980534 | Msa0083830:intron | 45.0% | |
ACAGATATCACAGGCATGGT+TGG | + | chr1_2:62980798-62980817 | None:intergenic | 45.0% | |
GGAATGACGACAGATATCAC+AGG | + | chr1_2:62980807-62980826 | None:intergenic | 45.0% | |
!! | ATCATTCTTACAGGGTGTCG+AGG | + | chr1_2:62980927-62980946 | None:intergenic | 45.0% |
TATATGGGGAAGGGTAACCA+AGG | - | chr1_2:62980974-62980993 | Msa0083830:intron | 45.0% | |
GATTCGGCCTGCACAAAAAA+AGG | + | chr1_2:62981098-62981117 | None:intergenic | 45.0% | |
! | TTAGACCATGGCAAGGCTTT+TGG | - | chr1_2:62981155-62981174 | Msa0083830:intron | 45.0% |
CAAACAACAACTCGGTCATG+TGG | + | chr1_2:62981191-62981210 | None:intergenic | 45.0% | |
TTCCTCAAGAAGCAAAGGGC+TGG | + | chr1_2:62975818-62975837 | None:intergenic | 50.0% | |
!! | AGGTTTGGATGGCTCTAGGA+TGG | + | chr1_2:62975857-62975876 | None:intergenic | 50.0% |
TGACAGGTTTGGATGGCTCT+AGG | + | chr1_2:62975861-62975880 | None:intergenic | 50.0% | |
!! | GTGGTCCAAATTGGTTCTGG+AGG | + | chr1_2:62976239-62976258 | None:intergenic | 50.0% |
ATTACCCGATGCCTTGATGC+AGG | - | chr1_2:62976697-62976716 | Msa0083830:intron | 50.0% | |
! | CATTCCTGCATCAAGGCATC+GGG | + | chr1_2:62976704-62976723 | None:intergenic | 50.0% |
TGCCTTGATGCAGGAATGTC+TGG | - | chr1_2:62976706-62976725 | Msa0083830:intron | 50.0% | |
CAAACCGTGCAACTGGCATA+TGG | + | chr1_2:62977236-62977255 | None:intergenic | 50.0% | |
GAGAAGTCAAACCGTGCAAC+TGG | + | chr1_2:62977243-62977262 | None:intergenic | 50.0% | |
! | GCACGGTTTGACTTCTCATG+GGG | - | chr1_2:62977246-62977265 | Msa0083830:intron | 50.0% |
CTTCACGGCCTGCATAATCA+TGG | + | chr1_2:62977777-62977796 | None:intergenic | 50.0% | |
GATTATGCAGGCCGTGAAGA+AGG | - | chr1_2:62977778-62977797 | Msa0083830:CDS | 50.0% | |
ATACAGGTCAGCGAGGTGAA+TGG | - | chr1_2:62978300-62978319 | Msa0083830:intron | 50.0% | |
GATAGATCTCCCACCTGAGA+AGG | - | chr1_2:62979390-62979409 | Msa0083830:intron | 50.0% | |
AGCAACCGATGTTGCCAATG+CGG | - | chr1_2:62979700-62979719 | Msa0083830:intron | 50.0% | |
CGATGTTGCCAATGCGGTAT+TGG | - | chr1_2:62979706-62979725 | Msa0083830:intron | 50.0% | |
! | GTTGCCAATGCGGTATTGGA+TGG | - | chr1_2:62979710-62979729 | Msa0083830:intron | 50.0% |
GGCAGTGATGCAATTCTCCT+TGG | - | chr1_2:62979944-62979963 | Msa0083830:intron | 50.0% | |
TCTGCTTCACCTCATCTGGA+AGG | - | chr1_2:62980519-62980538 | Msa0083830:intron | 50.0% | |
CTGCTTCACCTCATCTGGAA+GGG | - | chr1_2:62980520-62980539 | Msa0083830:intron | 50.0% | |
GACGACAGATATCACAGGCA+TGG | + | chr1_2:62980802-62980821 | None:intergenic | 50.0% | |
CAACTCCGATGGACATTCAC+CGG | - | chr1_2:62980843-62980862 | Msa0083830:intron | 50.0% | |
CGGCAGTCACTTATTGTGAG+AGG | - | chr1_2:62980879-62980898 | Msa0083830:intron | 50.0% | |
! | GAGAGGTCTTTTCCCTATGC+TGG | - | chr1_2:62980896-62980915 | Msa0083830:intron | 50.0% |
! | AGGTCTTTTCCCTATGCTGG+CGG | - | chr1_2:62980899-62980918 | Msa0083830:intron | 50.0% |
! | GCACAGCATTTTCCCGATTG+AGG | + | chr1_2:62981013-62981032 | None:intergenic | 50.0% |
CAATCGGGAAAATGCTGTGC+AGG | - | chr1_2:62981013-62981032 | Msa0083830:intron | 50.0% | |
! | GGTTGCTTTAGACCATGGCA+AGG | - | chr1_2:62981148-62981167 | Msa0083830:intron | 50.0% |
TGATGCCAAAAGCCTTGCCA+TGG | + | chr1_2:62981163-62981182 | None:intergenic | 50.0% | |
CTGACGAGTCACCAACTTTC+TGG | + | chr1_2:62981214-62981233 | None:intergenic | 50.0% | |
GTCCAGCCCTTTGCTTCTTG+AGG | - | chr1_2:62975813-62975832 | Msa0083830:three_prime_UTR | 55.0% | |
CGTGCCGGGTGTATAATGAG+AGG | + | chr1_2:62978887-62978906 | None:intergenic | 55.0% | |
TCGAACATCTTCAGCGTGCC+GGG | + | chr1_2:62978901-62978920 | None:intergenic | 55.0% | |
GTCGAACATCTTCAGCGTGC+CGG | + | chr1_2:62978902-62978921 | None:intergenic | 55.0% | |
GATCTCCCACCTGAGAAGGT+TGG | - | chr1_2:62979394-62979413 | Msa0083830:intron | 55.0% | |
ACCACGCGTGTGACAACAAC+GGG | + | chr1_2:62979641-62979660 | None:intergenic | 55.0% | |
GACCACGCGTGTGACAACAA+CGG | + | chr1_2:62979642-62979661 | None:intergenic | 55.0% | |
TCGGTTGCTTCAGCACGAGT+AGG | + | chr1_2:62979689-62979708 | None:intergenic | 55.0% | |
TCGAGCAGCCGTCAAGGTTA+AGG | - | chr1_2:62980484-62980503 | Msa0083830:intron | 55.0% | |
!! | AGGCACCGGTGAATGTCCAT+CGG | + | chr1_2:62980851-62980870 | None:intergenic | 55.0% |
GACATTCACCGGTGCCTTTC+AGG | - | chr1_2:62980854-62980873 | Msa0083830:intron | 55.0% | |
AAGTGACTGCCGAGCCTGAA+AGG | + | chr1_2:62980871-62980890 | None:intergenic | 55.0% | |
GTGCAGGCTGAGTCGAATAC+TGG | - | chr1_2:62981029-62981048 | Msa0083830:intron | 55.0% | |
GTGCAGGCCGAATCGAATAC+TGG | - | chr1_2:62981104-62981123 | Msa0083830:intron | 55.0% | |
CAGTAAGGGTCTCTGCCCCA+AGG | + | chr1_2:62979964-62979983 | None:intergenic | 60.0% | |
CTTGGGGCAGAGACCCTTAC+TGG | - | chr1_2:62979962-62979981 | Msa0083830:intron | 60.0% | |
ACAGGTTCGAGCAGCCGTCA+AGG | - | chr1_2:62980478-62980497 | Msa0083830:intron | 60.0% | |
CCTTGCAGCCCTTCCAGATG+AGG | + | chr1_2:62980531-62980550 | None:intergenic | 60.0% | |
CCTCATCTGGAAGGGCTGCA+AGG | - | chr1_2:62980528-62980547 | Msa0083830:intron | 60.0% | |
TCACCGGTGCCTTTCAGGCT+CGG | - | chr1_2:62980859-62980878 | Msa0083830:intron | 60.0% | |
GTCGAGGATCCGCCAGCATA+GGG | + | chr1_2:62980911-62980930 | None:intergenic | 60.0% | |
TGTCGAGGATCCGCCAGCAT+AGG | + | chr1_2:62980912-62980931 | None:intergenic | 60.0% | |
GCCCGTTGTTGTCACACGCG+TGG | - | chr1_2:62979637-62979656 | Msa0083830:intron | 65.0% | |
GGGAGAGCCGATGAGCCACA+TGG | - | chr1_2:62980337-62980356 | Msa0083830:intron | 65.0% | |
! | CTGCCGAGCCTGAAAGGCAC+CGG | + | chr1_2:62980865-62980884 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 62975717 | 62981406 | 62975717 | ID=Msa0083830;Name=Msa0083830 |
chr1_2 | mRNA | 62975717 | 62981406 | 62975717 | ID=Msa0083830-mRNA-1;Parent=Msa0083830;Name=Msa0083830-mRNA-1;_AED=0.17;_eAED=0.17;_QI=91|1|1|1|0.78|0.86|15|144|526 |
chr1_2 | exon | 62975717 | 62976013 | 62975717 | ID=Msa0083830-mRNA-1:exon:21051;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62976188 | 62976347 | 62976188 | ID=Msa0083830-mRNA-1:exon:21050;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62976574 | 62976641 | 62976574 | ID=Msa0083830-mRNA-1:exon:21049;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62976744 | 62976839 | 62976744 | ID=Msa0083830-mRNA-1:exon:21048;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62977090 | 62977178 | 62977090 | ID=Msa0083830-mRNA-1:exon:21047;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62977392 | 62977536 | 62977392 | ID=Msa0083830-mRNA-1:exon:21046;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62977712 | 62977801 | 62977712 | ID=Msa0083830-mRNA-1:exon:21045;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62977939 | 62978010 | 62977939 | ID=Msa0083830-mRNA-1:exon:21044;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62978200 | 62978277 | 62978200 | ID=Msa0083830-mRNA-1:exon:21043;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62978686 | 62978817 | 62978686 | ID=Msa0083830-mRNA-1:exon:21042;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62979258 | 62979335 | 62979258 | ID=Msa0083830-mRNA-1:exon:21041;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62979459 | 62979614 | 62979459 | ID=Msa0083830-mRNA-1:exon:21040;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62979782 | 62979879 | 62979782 | ID=Msa0083830-mRNA-1:exon:21039;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62980396 | 62980492 | 62980396 | ID=Msa0083830-mRNA-1:exon:21038;Parent=Msa0083830-mRNA-1 |
chr1_2 | exon | 62981247 | 62981406 | 62981247 | ID=Msa0083830-mRNA-1:exon:21037;Parent=Msa0083830-mRNA-1 |
chr1_2 | five_prime_UTR | 62981316 | 62981406 | 62981316 | ID=Msa0083830-mRNA-1:five_prime_utr;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62981247 | 62981315 | 62981247 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62980396 | 62980492 | 62980396 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62979782 | 62979879 | 62979782 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62979459 | 62979614 | 62979459 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62979258 | 62979335 | 62979258 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62978686 | 62978817 | 62978686 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62978200 | 62978277 | 62978200 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62977939 | 62978010 | 62977939 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62977712 | 62977801 | 62977712 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62977392 | 62977536 | 62977392 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62977090 | 62977178 | 62977090 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62976744 | 62976839 | 62976744 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62976574 | 62976641 | 62976574 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62976188 | 62976347 | 62976188 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | CDS | 62975861 | 62976013 | 62975861 | ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1 |
chr1_2 | three_prime_UTR | 62975717 | 62975860 | 62975717 | ID=Msa0083830-mRNA-1:three_prime_utr;Parent=Msa0083830-mRNA-1 |
Gene Sequence |
Protein sequence |