AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083830 MtrunA17_Chr1g0197911 99.430 526 3 0 1 526 1 526 0.0 1079
Msa0083830 MtrunA17_Chr7g0265591 81.784 527 95 1 1 526 1 527 0.0 921
Msa0083830 MtrunA17_Chr1g0179541 80.529 529 84 3 1 526 1 513 0.0 887
Msa0083830 MtrunA17_Chr6g0448901 43.030 495 269 7 30 521 22 506 8.00e-132 393
Msa0083830 MtrunA17_Chr7g0263711 41.942 515 281 9 14 525 1 500 1.73e-128 384
Msa0083830 MtrunA17_Chr4g0043311 41.683 499 278 7 30 525 9 497 2.54e-127 380
Msa0083830 MtrunA17_Chr4g0043301 41.553 515 283 9 14 525 1 500 1.10e-124 374
Msa0083830 MtrunA17_Chr5g0400361 30.000 410 255 11 30 430 79 465 3.51e-47 172
Msa0083830 MtrunA17_Chr1g0206791 26.761 497 319 12 30 513 18 482 1.12e-46 170
Msa0083830 MtrunA17_Chr6g0463101 28.081 495 313 15 21 511 99 554 1.14e-45 168
Msa0083830 MtrunA17_Chr1g0202291 27.778 486 309 15 30 511 105 552 2.82e-44 164
Msa0083830 MtrunA17_Chr1g0188101 26.653 499 312 12 30 508 91 555 9.91e-44 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083830 AT3G52990.1 81.404 527 97 1 1 526 1 527 0.0 911
Msa0083830 AT2G36580.1 80.455 527 102 1 1 526 1 527 0.0 895
Msa0083830 AT3G52990.2 82.068 474 84 1 54 526 1 474 0.0 830
Msa0083830 AT5G63680.3 43.030 495 269 7 30 521 22 506 5.33e-128 383
Msa0083830 AT5G63680.1 43.030 495 269 7 30 521 22 506 5.33e-128 383
Msa0083830 AT5G63680.2 43.030 495 269 7 30 521 22 506 5.33e-128 383
Msa0083830 AT5G08570.1 43.232 495 268 9 30 521 22 506 5.69e-127 380
Msa0083830 AT5G08570.2 43.232 495 268 9 30 521 22 506 5.69e-127 380
Msa0083830 AT5G08570.3 43.232 495 268 9 30 521 22 506 5.69e-127 380
Msa0083830 AT5G56350.1 42.540 496 272 8 30 522 10 495 8.16e-126 377
Msa0083830 AT4G26390.1 40.882 499 282 7 30 525 9 497 2.13e-121 366
Msa0083830 AT3G04050.1 40.637 502 283 8 30 525 18 510 5.50e-120 363
Msa0083830 AT3G55650.1 41.036 502 281 7 30 525 18 510 2.10e-117 356
Msa0083830 AT3G25960.1 40.882 499 273 8 30 525 18 497 6.43e-116 352
Msa0083830 AT3G55810.1 38.247 502 277 8 30 525 18 492 1.83e-103 320
Msa0083830 AT1G32440.1 30.332 422 267 11 30 448 101 498 1.07e-47 174
Msa0083830 AT5G52920.1 29.227 414 272 12 21 431 104 499 8.10e-43 161
Msa0083830 AT3G22960.1 25.852 499 314 13 30 508 119 581 4.14e-40 154

Find 134 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTACATCACTCTAATT+AGG 0.115031 1_2:+62975812 None:intergenic
GACATTCACCGGTGCCTTTC+AGG 0.125937 1_2:-62976247 Msa0083830:CDS
AAGAGACATTGGAAAATTTA+AGG 0.150763 1_2:-62979815 Msa0083830:CDS
CATTGTCTCTCGTGGAAATT+TGG 0.157630 1_2:-62977735 Msa0083830:CDS
CTGCTTGAGGTCTTCAAATT+TGG 0.167564 1_2:+62977972 None:intergenic
CTGACGAGTCACCAACTTTC+TGG 0.209286 1_2:+62975890 None:intergenic
CTTGGGGCAGAGACCCTTAC+TGG 0.238060 1_2:-62977139 Msa0083830:CDS
AATGTCTCTTGGTGGTATTC+TGG 0.238537 1_2:+62979828 None:intergenic
ATCGGTAAATATCTGTTTAC+AGG 0.257297 1_2:-62979286 Msa0083830:CDS
GAAAGGCCGCTAAAATTTAC+TGG 0.264525 1_2:+62979463 None:intergenic
TGCTTCTTGAGGAACCTATT+AGG 0.292663 1_2:-62981277 Msa0083830:CDS
TTAGACCATGGCAAGGCTTT+TGG 0.295423 1_2:-62975946 Msa0083830:CDS
TTATTCACGACTTGTAATTC+TGG 0.303358 1_2:+62979571 None:intergenic
CATCACTGGTTAATTTGTTT+AGG 0.303785 1_2:-62981350 Msa0083830:five_prime_UTR
CTATTACATCACTCTAATTA+GGG 0.309353 1_2:+62975813 None:intergenic
GTAGCTTCTTTGTTCTGATC+TGG 0.328901 1_2:+62979499 None:intergenic
CTGGTTAATTTGTTTAGGTT+TGG 0.330385 1_2:-62981345 Msa0083830:five_prime_UTR
ATTGTCTCTCGTGGAAATTT+GGG 0.332252 1_2:-62977734 Msa0083830:CDS
GTGTCTGCTTCAAGGGTAAT+TGG 0.332260 1_2:+62979538 None:intergenic
AGAGACATTGGAAAATTTAA+GGG 0.372740 1_2:-62979814 Msa0083830:CDS
GTGCAGGCCGAATCGAATAC+TGG 0.373754 1_2:-62975997 Msa0083830:intron
CGATGTTGCCAATGCGGTAT+TGG 0.382976 1_2:-62977395 Msa0083830:CDS
AGGATGGAAGCCATCCTAAT+AGG 0.392259 1_2:+62981263 None:intergenic
ACCACGCGTGTGACAACAAC+GGG 0.392637 1_2:+62977463 None:intergenic
ATCATCTGCTTCACCTCATC+TGG 0.394382 1_2:-62976586 Msa0083830:CDS
GATGGAGATACTGACAGGTT+TGG 0.408779 1_2:+62981232 None:intergenic
TAAGAAGACTGTCAAATTTG+TGG 0.413491 1_2:-62976785 Msa0083830:CDS
AAGAAGACTGTCAAATTTGT+GGG 0.415739 1_2:-62976784 Msa0083830:CDS
GCAGTGATGCAATTCTCCTT+GGG 0.424846 1_2:-62977156 Msa0083830:CDS
GTCCAGCCCTTTGCTTCTTG+AGG 0.431172 1_2:-62981288 Msa0083830:CDS
TCGAGCAGCCGTCAAGGTTA+AGG 0.439602 1_2:-62976617 Msa0083830:CDS
TCACCGGTGCCTTTCAGGCT+CGG 0.445968 1_2:-62976242 Msa0083830:CDS
TTGCACGGTTTGACTTCTCA+TGG 0.446494 1_2:-62979857 Msa0083830:CDS
AAGTAGATACCAACCTTCTC+AGG 0.448375 1_2:+62977698 None:intergenic
CAAGTGATGTGTCTGCTTCA+AGG 0.449834 1_2:+62979530 None:intergenic
GGCAGTGATGCAATTCTCCT+TGG 0.450255 1_2:-62977157 Msa0083830:CDS
ACTGTAGAAATGGTTTCTAC+AGG 0.450667 1_2:+62977109 None:intergenic
AGTTGATTTGTCTTCAATTG+AGG 0.452233 1_2:+62976276 None:intergenic
TGCCTTGATGCAGGAATGTC+TGG 0.456273 1_2:-62980395 Msa0083830:intron
AATAGTATCACCCTTCTTCA+CGG 0.459621 1_2:+62979312 None:intergenic
ATCAAATGAATCAATCTTGA+AGG 0.460016 1_2:-62975974 Msa0083830:CDS
GATTATGCAGGCCGTGAAGA+AGG 0.462451 1_2:-62979323 Msa0083830:intron
ATTTCTCTCTCCTTCATCAC+TGG 0.462864 1_2:-62981364 Msa0083830:five_prime_UTR
GTAGAAACCATTTCTACAGT+TGG 0.470386 1_2:-62977106 Msa0083830:CDS
TCTTCCTACTCTTACTGATA+AGG 0.470694 1_2:-62978694 Msa0083830:CDS
TGTCTGCTTCAAGGGTAATT+GGG 0.470997 1_2:+62979539 None:intergenic
TCGAACATCTTCAGCGTGCC+GGG 0.473885 1_2:+62978203 None:intergenic
GTCGAACATCTTCAGCGTGC+CGG 0.475089 1_2:+62978202 None:intergenic
TGCACGGTTTGACTTCTCAT+GGG 0.475448 1_2:-62979856 Msa0083830:CDS
ATTTGATCCAGTATTCGATT+CGG 0.478935 1_2:+62975990 None:intergenic
AACAGATGCCTTAACCTTGA+CGG 0.480991 1_2:+62976609 None:intergenic
AACAAATTAACCAGTGATGA+AGG 0.487622 1_2:+62981354 None:intergenic
AAGTGATGTGTCTGCTTCAA+GGG 0.505911 1_2:+62979531 None:intergenic
TGTCGAGGATCCGCCAGCAT+AGG 0.508898 1_2:+62976192 None:intergenic
GAAGTGAAACAACTTCTGTA+TGG 0.510806 1_2:-62979264 Msa0083830:CDS
ACATTCCTGCATCAAGGCAT+CGG 0.512212 1_2:+62980399 None:intergenic
TCTTACTGATAAGGATAAAG+AGG 0.518845 1_2:-62978685 Msa0083830:intron
TTCCTCAAGAAGCAAAGGGC+TGG 0.521311 1_2:+62981286 None:intergenic
AAGTGACTGCCGAGCCTGAA+AGG 0.521502 1_2:+62976233 None:intergenic
GTCGAGGATCCGCCAGCATA+GGG 0.522821 1_2:+62976193 None:intergenic
CATTCCTGCATCAAGGCATC+GGG 0.523891 1_2:+62980400 None:intergenic
ATTACCCGATGCCTTGATGC+AGG 0.526566 1_2:-62980404 Msa0083830:CDS
CAAATTTGGAGAAATATTCA+CGG 0.527033 1_2:+62977986 None:intergenic
CTACAGGGTATAATCCAGTA+AGG 0.529033 1_2:+62977125 None:intergenic
CTGCTTCACCTCATCTGGAA+GGG 0.535094 1_2:-62976581 Msa0083830:CDS
ATTTATAAGTGTAACATGGC+GGG 0.535820 1_2:-62977490 Msa0083830:CDS
AAATTTGGAGAAATATTCAC+GGG 0.536430 1_2:+62977987 None:intergenic
CCTCATCTGGAAGGGCTGCA+AGG 0.537274 1_2:-62976573 Msa0083830:intron
TAGGTTCCTCAAGAAGCAAA+GGG 0.537810 1_2:+62981282 None:intergenic
TGACAGGTTTGGATGGCTCT+AGG 0.546806 1_2:+62981243 None:intergenic
TCTTGAGGAACCTATTAGGA+TGG 0.548539 1_2:-62981273 Msa0083830:CDS
ATAGGTTCCTCAAGAAGCAA+AGG 0.550497 1_2:+62981281 None:intergenic
AGAATACCACCAAGAGACAT+TGG 0.551827 1_2:-62979826 Msa0083830:CDS
AGGTTTGGATGGCTCTAGGA+TGG 0.555270 1_2:+62981247 None:intergenic
TTGAAGGTTGCTTTAGACCA+TGG 0.555702 1_2:-62975958 Msa0083830:CDS
ATTGATTCCATGTGGCTCAT+CGG 0.557927 1_2:+62976757 None:intergenic
CTGCCGAGCCTGAAAGGCAC+CGG 0.563741 1_2:+62976239 None:intergenic
TGCAAAGATCGAAAATGTAG+AGG 0.564673 1_2:-62977938 Msa0083830:intron
ATCATTCTTACAGGGTGTCG+AGG 0.564881 1_2:+62976177 None:intergenic
TCTGCTTCACCTCATCTGGA+AGG 0.565181 1_2:-62976582 Msa0083830:CDS
TACCAGACATTCCTGCATCA+AGG 0.565424 1_2:+62980393 None:intergenic
ACAGATATCACAGGCATGGT+TGG 0.565703 1_2:+62976306 None:intergenic
CTGTAGAAATGGTTTCTACA+GGG 0.567154 1_2:+62977110 None:intergenic
ATTATGCAGGCCGTGAAGAA+GGG 0.567518 1_2:-62979322 Msa0083830:intron
ATACAGGTCAGCGAGGTGAA+TGG 0.567535 1_2:-62978801 Msa0083830:intron
GATGGTATCATTGTCTCTCG+TGG 0.568066 1_2:-62977743 Msa0083830:CDS
AACTTAGGTAATACGCACAT+GGG 0.571273 1_2:-62978262 Msa0083830:intron
ATTACCATCCAATACCGCAT+TGG 0.572130 1_2:+62977387 None:intergenic
GATAGATCTCCCACCTGAGA+AGG 0.574401 1_2:-62977711 Msa0083830:intron
CAACTCCGATGGACATTCAC+CGG 0.575309 1_2:-62976258 Msa0083830:CDS
GTTGTTGTTTGCCAGAAAGT+TGG 0.576382 1_2:-62975901 Msa0083830:CDS
GAGATACTGACAGGTTTGGA+TGG 0.577564 1_2:+62981236 None:intergenic
TGAAGACAAATCAACTCCGA+TGG 0.584693 1_2:-62976269 Msa0083830:CDS
CCTTGCAGCCCTTCCAGATG+AGG 0.586363 1_2:+62976573 None:intergenic
TTATCCTTATCAGTAAGAGT+AGG 0.591542 1_2:+62978690 None:intergenic
TGATGCCAAAAGCCTTGCCA+TGG 0.594137 1_2:+62975941 None:intergenic
CTTACCATATGCCAGTTGCA+CGG 0.596871 1_2:-62979872 Msa0083830:intron
CGGCAGTCACTTATTGTGAG+AGG 0.598163 1_2:-62976222 Msa0083830:CDS
ACAGGTTCGAGCAGCCGTCA+AGG 0.598249 1_2:-62976623 Msa0083830:intron
CTTTCTGGCAAACAACAACT+CGG 0.599279 1_2:+62975905 None:intergenic
CAATACCGCATTGGCAACAT+CGG 0.602302 1_2:+62977396 None:intergenic
TAGATACCAACCTTCTCAGG+TGG 0.602698 1_2:+62977701 None:intergenic
GCACGGTTTGACTTCTCATG+GGG 0.608536 1_2:-62979855 Msa0083830:CDS
AAGGTAGACTGACCTTTGAA+AGG 0.609390 1_2:+62979446 None:intergenic
GAGATATTGAGAGAAGCAGA+TGG 0.612258 1_2:-62977761 Msa0083830:CDS
TTGTCTCTCGTGGAAATTTG+GGG 0.612945 1_2:-62977733 Msa0083830:CDS
GCCCGTTGTTGTCACACGCG+TGG 0.617467 1_2:-62977464 Msa0083830:CDS
AGGCACCGGTGAATGTCCAT+CGG 0.624053 1_2:+62976253 None:intergenic
GGTTGCTTTAGACCATGGCA+AGG 0.624133 1_2:-62975953 Msa0083830:CDS
ACTTAGGTAATACGCACATG+GGG 0.626722 1_2:-62978261 Msa0083830:intron
TAACTTAGGTAATACGCACA+TGG 0.628609 1_2:-62978263 Msa0083830:intron
GACGACAGATATCACAGGCA+TGG 0.630625 1_2:+62976302 None:intergenic
CAGGTTATGCTAGATACTGT+AGG 0.633111 1_2:-62979595 Msa0083830:CDS
CAGTAAGGGTCTCTGCCCCA+AGG 0.637264 1_2:+62977140 None:intergenic
TACAGGGTATAATCCAGTAA+GGG 0.637369 1_2:+62977126 None:intergenic
GGGAGAGCCGATGAGCCACA+TGG 0.643980 1_2:-62976764 Msa0083830:CDS
TCGGTTGCTTCAGCACGAGT+AGG 0.643981 1_2:+62977415 None:intergenic
AACAACTTCTGTATGGCTAG+AGG 0.646199 1_2:-62979257 Msa0083830:intron
GTTGCCAATGCGGTATTGGA+TGG 0.648763 1_2:-62977391 Msa0083830:intron
AGATACCAACCTTCTCAGGT+GGG 0.649922 1_2:+62977702 None:intergenic
CAAACAACAACTCGGTCATG+TGG 0.652383 1_2:+62975913 None:intergenic
CAGTGATGCAATTCTCCTTG+GGG 0.653565 1_2:-62977155 Msa0083830:CDS
ACTTCCTCTCATTATACACC+CGG 0.654885 1_2:-62978221 Msa0083830:CDS
TGCTATTTATAAGTGTAACA+TGG 0.661564 1_2:-62977494 Msa0083830:CDS
GACCACGCGTGTGACAACAA+CGG 0.662133 1_2:+62977462 None:intergenic
AGCAACCGATGTTGCCAATG+CGG 0.662779 1_2:-62977401 Msa0083830:CDS
CGTGCCGGGTGTATAATGAG+AGG 0.669231 1_2:+62978217 None:intergenic
TATTTATAAGTGTAACATGG+CGG 0.681522 1_2:-62977491 Msa0083830:CDS
CTTAGGTAATACGCACATGG+GGG 0.693230 1_2:-62978260 Msa0083830:intron
TTAGGTAATACGCACATGGG+GGG 0.704480 1_2:-62978259 Msa0083830:intron
GGAATGACGACAGATATCAC+AGG 0.710120 1_2:+62976297 None:intergenic
AGGAAGCTATTGATTCCATG+TGG 0.726968 1_2:+62976749 None:intergenic
TGGTGAGAAATGTACTGCAG+AGG 0.726978 1_2:+62976729 None:intergenic
TTTCACAATACAGGTCAGCG+AGG 0.765838 1_2:-62978808 Msa0083830:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATGTTTTTTTTTTTT+TGG - chr1_2:62975913-62975932 Msa0083830:CDS 10.0%
!! AAAAATACAAATAAACAAAA+TGG + chr1_2:62979462-62979481 None:intergenic 10.0%
!!! TTTATTTTTTTATGTTATGT+AGG - chr1_2:62980754-62980773 Msa0083830:intron 10.0%
!!! ATATATATAAGTTGAATAAG+AGG - chr1_2:62976949-62976968 Msa0083830:intron 15.0%
!!! AAAAGTATTTAATAACACAA+CGG + chr1_2:62977943-62977962 None:intergenic 15.0%
!! TAATTCAGTTATAACTTATA+AGG - chr1_2:62977980-62977999 Msa0083830:CDS 15.0%
!! AATTCAGTTATAACTTATAA+GGG - chr1_2:62977981-62978000 Msa0083830:CDS 15.0%
!!! GGAAAATAGATTATTTTTTT+TGG - chr1_2:62978601-62978620 Msa0083830:intron 15.0%
!!! AATTTTTTGTCTTTTATATC+AGG - chr1_2:62979923-62979942 Msa0083830:intron 15.0%
!!! ATGATTTTATCATTACATTA+TGG - chr1_2:62980205-62980224 Msa0083830:intron 15.0%
!!! CATGTTTTTTTTTTTTTGGT+TGG - chr1_2:62975917-62975936 Msa0083830:CDS 20.0%
!!! CTTTTCTTGATGTAAATAAT+TGG - chr1_2:62975950-62975969 Msa0083830:CDS 20.0%
!! TGTAAATAATTGGTATTATG+AGG - chr1_2:62975960-62975979 Msa0083830:CDS 20.0%
!!! AATAAATTGAAATCAGCTTT+TGG - chr1_2:62976330-62976349 Msa0083830:intron 20.0%
!! ATGTAAGTAATTTACTCTTT+AGG - chr1_2:62976449-62976468 Msa0083830:intron 20.0%
!!! CAATGAATGAAATGTTTTAA+TGG + chr1_2:62976739-62976758 None:intergenic 20.0%
!!! TTTGTTCATAAGTTGATTAT+AGG - chr1_2:62976768-62976787 Msa0083830:CDS 20.0%
!! TCACAAGTAACAAAATTTAT+TGG - chr1_2:62977014-62977033 Msa0083830:intron 20.0%
!!! ATTTTCTCCAAGTTATTTTT+TGG - chr1_2:62978123-62978142 Msa0083830:intron 20.0%
!! TAACAAATGTAAAACTGATT+TGG - chr1_2:62978699-62978718 Msa0083830:CDS 20.0%
!!! TTCTTCTCTAAAATTCATAT+AGG - chr1_2:62979300-62979319 Msa0083830:CDS 20.0%
!!! TCTTCTCTAAAATTCATATA+GGG - chr1_2:62979301-62979320 Msa0083830:CDS 20.0%
!!! ATTTGTATTTTTTAGTGTCA+CGG - chr1_2:62979470-62979489 Msa0083830:CDS 20.0%
!! AAATTCATACATACATATTC+AGG + chr1_2:62979562-62979581 None:intergenic 20.0%
!!! AATTTTAATTGCGAAAAGTA+TGG + chr1_2:62980073-62980092 None:intergenic 20.0%
!!! TAATTTGTTAAGATATTCTG+TGG - chr1_2:62980159-62980178 Msa0083830:intron 20.0%
!!! TGAGAAGTCTTTTTAATAAA+GGG + chr1_2:62980582-62980601 None:intergenic 20.0%
!!! ATGAGAAGTCTTTTTAATAA+AGG + chr1_2:62980583-62980602 None:intergenic 20.0%
!! TACATTTAATCATTCTTACA+GGG + chr1_2:62980935-62980954 None:intergenic 20.0%
!! TTACATTTAATCATTCTTAC+AGG + chr1_2:62980936-62980955 None:intergenic 20.0%
!!! TCATATAGTGTTGTTATATA+TGG - chr1_2:62980958-62980977 Msa0083830:intron 20.0%
!!! CATATAGTGTTGTTATATAT+GGG - chr1_2:62980959-62980978 Msa0083830:intron 20.0%
!!! ATATAGTGTTGTTATATATG+GGG - chr1_2:62980960-62980979 Msa0083830:intron 20.0%
! TAAATAAATGAAGAGAGAGA+TGG + chr1_2:62975890-62975909 None:intergenic 25.0%
! GTCTATTTATGATTAGAGAT+GGG - chr1_2:62976422-62976441 Msa0083830:intron 25.0%
! TCTATTTATGATTAGAGATG+GGG - chr1_2:62976423-62976442 Msa0083830:intron 25.0%
! CAAAACAAATGTGAAAAACA+AGG + chr1_2:62976481-62976500 None:intergenic 25.0%
!!! CTTGTTTTTCACATTTGTTT+TGG - chr1_2:62976479-62976498 Msa0083830:intron 25.0%
! AAAGAGACAGTTAAAAATGA+AGG + chr1_2:62976827-62976846 None:intergenic 25.0%
! AAGTTGAATAAGAGGATAAA+TGG - chr1_2:62976957-62976976 Msa0083830:intron 25.0%
! TGTAAATAACCTTAGCTAAA+TGG - chr1_2:62977057-62977076 Msa0083830:intron 25.0%
! TCTTCTGTTATAATTTGGAT+TGG - chr1_2:62977153-62977172 Msa0083830:CDS 25.0%
!! TTAAATTTTCCAATGTCTCT+TGG + chr1_2:62977287-62977306 None:intergenic 25.0%
! AAGAGACATTGGAAAATTTA+AGG - chr1_2:62977286-62977305 Msa0083830:intron 25.0%
! AGAGACATTGGAAAATTTAA+GGG - chr1_2:62977287-62977306 Msa0083830:intron 25.0%
! GACATACTATTAAATGATTG+TGG - chr1_2:62977384-62977403 Msa0083830:intron 25.0%
!!! TGATTGTGGTTTTAATACAT+TGG - chr1_2:62977398-62977417 Msa0083830:CDS 25.0%
!! GTAACAATATACATGCATTT+TGG - chr1_2:62977475-62977494 Msa0083830:CDS 25.0%
!! CTATTACCAGTAAATTTTAG+CGG - chr1_2:62977632-62977651 Msa0083830:intron 25.0%
!!! AAGGGTGATACTATTTTTAT+CGG - chr1_2:62977797-62977816 Msa0083830:intron 25.0%
! ATAGGATCCAAAAAATAACT+TGG + chr1_2:62978133-62978152 None:intergenic 25.0%
! AAAATGACTTATCTTTCTGT+TGG - chr1_2:62978567-62978586 Msa0083830:intron 25.0%
! GTACACTTACATTTAATCTT+TGG + chr1_2:62978632-62978651 None:intergenic 25.0%
! AACTATTTACACAATTGATG+AGG - chr1_2:62978652-62978671 Msa0083830:intron 25.0%
! AACTATTTACACAATTGATG+AGG - chr1_2:62978652-62978671 Msa0083830:intron 25.0%
! TTAGTGAGTAAAATGTCAAA+AGG + chr1_2:62978821-62978840 None:intergenic 25.0%
!! GCATTGTTTATGTTTTCTAA+TGG + chr1_2:62979074-62979093 None:intergenic 25.0%
! AAATTTGGAGAAATATTCAC+GGG + chr1_2:62979117-62979136 None:intergenic 25.0%
! CAAATTTGGAGAAATATTCA+CGG + chr1_2:62979118-62979137 None:intergenic 25.0%
! TTTATGATTGTGCTTAATTG+TGG - chr1_2:62979262-62979281 Msa0083830:CDS 25.0%
!! AATAAACAAAATGGAAGCAT+AGG + chr1_2:62979453-62979472 None:intergenic 25.0%
! TATGTATGTATGAATTTGAC+AGG - chr1_2:62979565-62979584 Msa0083830:CDS 25.0%
!! ACTTATAAATAGCAGCTTTT+TGG + chr1_2:62979601-62979620 None:intergenic 25.0%
!! TGCTATTTATAAGTGTAACA+TGG - chr1_2:62979607-62979626 Msa0083830:intron 25.0%
! TATTTATAAGTGTAACATGG+CGG - chr1_2:62979610-62979629 Msa0083830:intron 25.0%
! ACAAAAAAGAACTTAGATGA+GGG + chr1_2:62979747-62979766 None:intergenic 25.0%
!! AATTTTTCCAACTGTAGAAA+TGG + chr1_2:62980005-62980024 None:intergenic 25.0%
! AAATACTGAAAGAAAGAAGA+AGG + chr1_2:62980642-62980661 None:intergenic 25.0%
!! ATTTAGTTTAGTTCCACATT+CGG - chr1_2:62980662-62980681 Msa0083830:intron 25.0%
! AACGATATTAAAACCTCAAT+CGG - chr1_2:62980997-62981016 Msa0083830:intron 25.0%
! ATCAAATGAATCAATCTTGA+AGG - chr1_2:62981127-62981146 Msa0083830:intron 25.0%
! CTATTACATCACTCTAATTA+GGG + chr1_2:62981291-62981310 None:intergenic 25.0%
! TCTATTACATCACTCTAATT+AGG + chr1_2:62981292-62981311 None:intergenic 25.0%
!!! TAAGTTTTTGAGTGACAAAA+TGG - chr1_2:62981322-62981341 Msa0083830:five_prime_UTR 25.0%
!!! ACTATAGTTTTGAACTAGAA+CGG - chr1_2:62981381-62981400 Msa0083830:five_prime_UTR 25.0%
AACAAATTAACCAGTGATGA+AGG + chr1_2:62975750-62975769 None:intergenic 30.0%
!! CATCACTGGTTAATTTGTTT+AGG - chr1_2:62975751-62975770 Msa0083830:three_prime_UTR 30.0%
!! CTGGTTAATTTGTTTAGGTT+TGG - chr1_2:62975756-62975775 Msa0083830:three_prime_UTR 30.0%
!!! AAATGCTAGTGTAGTTTTGT+TGG - chr1_2:62976046-62976065 Msa0083830:intron 30.0%
TTCAAGATCAATCTATGTCA+AGG + chr1_2:62976139-62976158 None:intergenic 30.0%
AGAATGACAATGCTTATGTT+TGG + chr1_2:62976275-62976294 None:intergenic 30.0%
CCAAATAATAATGCAACAAC+TGG + chr1_2:62976360-62976379 None:intergenic 30.0%
CCAGTTGTTGCATTATTATT+TGG - chr1_2:62976357-62976376 Msa0083830:intron 30.0%
CGTCTATTTATGATTAGAGA+TGG - chr1_2:62976421-62976440 Msa0083830:intron 30.0%
CTATTTATGATTAGAGATGG+GGG - chr1_2:62976424-62976443 Msa0083830:intron 30.0%
CAAGAGAACTACTAAAAGAA+AGG - chr1_2:62976507-62976526 Msa0083830:intron 30.0%
! CCTATAATTTTTGTCATAGC+TGG + chr1_2:62976643-62976662 None:intergenic 30.0%
CCAGCTATGACAAAAATTAT+AGG - chr1_2:62976640-62976659 Msa0083830:intron 30.0%
ACAAAAATTATAGGCACACT+TGG - chr1_2:62976649-62976668 Msa0083830:intron 30.0%
AAGTGCAGTAAATCTGATAA+AGG + chr1_2:62976798-62976817 None:intergenic 30.0%
AAGAGGATAAATGGTATTAC+AGG - chr1_2:62976966-62976985 Msa0083830:intron 30.0%
ATAACCTTAGCTAAATGGAA+TGG - chr1_2:62977062-62977081 Msa0083830:intron 30.0%
GCTGTTCTTCTGTTATAATT+TGG - chr1_2:62977148-62977167 Msa0083830:CDS 30.0%
TGCACGTATGGAAAATAAAT+TGG + chr1_2:62977431-62977450 None:intergenic 30.0%
!!! ATGCATTTTGGTTCAATTAC+AGG - chr1_2:62977487-62977506 Msa0083830:CDS 30.0%
TTATTCACGACTTGTAATTC+TGG + chr1_2:62977533-62977552 None:intergenic 30.0%
TAAACATGTGATCCAACAAA+TGG + chr1_2:62977684-62977703 None:intergenic 30.0%
! CATGGCTAATATGAAAGTAT+TGG + chr1_2:62977711-62977730 None:intergenic 30.0%
CATTGTAGTACACATTATCA+TGG + chr1_2:62977729-62977748 None:intergenic 30.0%
GTGATTATCTCCTTTAACTA+AGG - chr1_2:62977748-62977767 Msa0083830:CDS 30.0%
ATCATGGATACCTTAGTTAA+AGG + chr1_2:62977761-62977780 None:intergenic 30.0%
ATCGGTAAATATCTGTTTAC+AGG - chr1_2:62977815-62977834 Msa0083830:intron 30.0%
CAGACATAGTTCAATCTTTA+AGG - chr1_2:62977872-62977891 Msa0083830:intron 30.0%
GTTATAACTGAATTACCCTA+AGG + chr1_2:62977975-62977994 None:intergenic 30.0%
AGGAAATTTGGTAGACTTAT+AGG + chr1_2:62978151-62978170 None:intergenic 30.0%
GCGAATATAAGAAGGAAATT+TGG + chr1_2:62978163-62978182 None:intergenic 30.0%
!! ATATTCGCAGTTAGCTTTAA+AGG - chr1_2:62978175-62978194 Msa0083830:intron 30.0%
AAGGTAGCATTATATGAAAC+AGG - chr1_2:62978194-62978213 Msa0083830:intron 30.0%
! TTTTGTACTCTAAGTGTAAG+TGG - chr1_2:62978264-62978283 Msa0083830:intron 30.0%
TTATCCTTATCAGTAAGAGT+AGG + chr1_2:62978414-62978433 None:intergenic 30.0%
TCTTACTGATAAGGATAAAG+AGG - chr1_2:62978416-62978435 Msa0083830:intron 30.0%
GTAGTGAAATTGACATAATG+TGG - chr1_2:62978464-62978483 Msa0083830:intron 30.0%
! TTTCTGTTGGTCTGTAAATA+TGG - chr1_2:62978580-62978599 Msa0083830:intron 30.0%
TGCAATTCGTGATTGTATAA+TGG + chr1_2:62978729-62978748 None:intergenic 30.0%
! GACATTTTACTCACTAACTT+AGG - chr1_2:62978824-62978843 Msa0083830:intron 30.0%
AGCAGAAAGTCTATTGTTTA+GGG + chr1_2:62979205-62979224 None:intergenic 30.0%
AAGCAGAAAGTCTATTGTTT+AGG + chr1_2:62979206-62979225 None:intergenic 30.0%
! TAACATCAGATTTTTCTGAC+CGG + chr1_2:62979429-62979448 None:intergenic 30.0%
ATTTATAAGTGTAACATGGC+GGG - chr1_2:62979611-62979630 Msa0083830:intron 30.0%
AAAAAAGAACTTAGATGAGG+GGG + chr1_2:62979745-62979764 None:intergenic 30.0%
CAAAAAAGAACTTAGATGAG+GGG + chr1_2:62979746-62979765 None:intergenic 30.0%
GACAAAAAAGAACTTAGATG+AGG + chr1_2:62979748-62979767 None:intergenic 30.0%
TTTGTCGTATTTGAATAGTC+CGG - chr1_2:62979762-62979781 Msa0083830:intron 30.0%
! TTAATTGCGAAAAGTATGGT+AGG + chr1_2:62980069-62980088 None:intergenic 30.0%
GTATGACAAGAATACAAACA+AGG + chr1_2:62980139-62980158 None:intergenic 30.0%
TAAGAAGACTGTCAAATTTG+TGG - chr1_2:62980316-62980335 Msa0083830:intron 30.0%
AAGAAGACTGTCAAATTTGT+GGG - chr1_2:62980317-62980336 Msa0083830:intron 30.0%
GCAAGTGAATAGAATAATGT+TGG + chr1_2:62980395-62980414 None:intergenic 30.0%
TATTCTATTCACTTGCTCAA+AGG - chr1_2:62980399-62980418 Msa0083830:CDS 30.0%
ATTCTATTCACTTGCTCAAA+GGG - chr1_2:62980400-62980419 Msa0083830:CDS 30.0%
! TTCTTTTTCCTGAAACATAC+AGG - chr1_2:62980460-62980479 Msa0083830:CDS 30.0%
!! AGTTGATTTGTCTTCAATTG+AGG + chr1_2:62980828-62980847 None:intergenic 30.0%
ACGATATTAAAACCTCAATC+GGG - chr1_2:62980998-62981017 Msa0083830:intron 30.0%
ATTTGATCCAGTATTCGATT+CGG + chr1_2:62981114-62981133 None:intergenic 30.0%
TTCAACTTGATCTACCATAC+TGG + chr1_2:62976026-62976045 None:intergenic 35.0%
!!! ACTTTTGAAGTGGTCCAAAT+TGG + chr1_2:62976248-62976267 None:intergenic 35.0%
!! GTTTGGTTTCACTTTTGAAG+TGG + chr1_2:62976258-62976277 None:intergenic 35.0%
! AATTTTCCAATGTCTCTTGG+TGG + chr1_2:62977284-62977303 None:intergenic 35.0%
TACACTAATTACCCTTCAGA+AGG + chr1_2:62977458-62977477 None:intergenic 35.0%
!! AAATTTTAGCGGCCTTTCAA+AGG - chr1_2:62977643-62977662 Msa0083830:intron 35.0%
! GTCTACCTTTTTCCATTTGT+TGG - chr1_2:62977669-62977688 Msa0083830:intron 35.0%
GTGATCCAACAAATGGAAAA+AGG + chr1_2:62977677-62977696 None:intergenic 35.0%
! TAAGGTATCCATGATTATGC+AGG - chr1_2:62977766-62977785 Msa0083830:CDS 35.0%
AATAGTATCACCCTTCTTCA+CGG + chr1_2:62977792-62977811 None:intergenic 35.0%
GAAGTGAAACAACTTCTGTA+TGG - chr1_2:62977837-62977856 Msa0083830:intron 35.0%
! TACTTTTCTTTGACCTCCTT+AGG - chr1_2:62977956-62977975 Msa0083830:CDS 35.0%
! ACTTTTCTTTGACCTCCTTA+GGG - chr1_2:62977957-62977976 Msa0083830:CDS 35.0%
ATAACTGAATTACCCTAAGG+AGG + chr1_2:62977972-62977991 None:intergenic 35.0%
CTTGTCAAGTAGAAAGACTA+AGG + chr1_2:62978079-62978098 None:intergenic 35.0%
AGCTAACTGCGAATATAAGA+AGG + chr1_2:62978171-62978190 None:intergenic 35.0%
TGGTATCTGTTTCACAATAC+AGG - chr1_2:62978284-62978303 Msa0083830:intron 35.0%
TCTTCCTACTCTTACTGATA+AGG - chr1_2:62978407-62978426 Msa0083830:intron 35.0%
TAACTTAGGTAATACGCACA+TGG - chr1_2:62978838-62978857 Msa0083830:intron 35.0%
AACTTAGGTAATACGCACAT+GGG - chr1_2:62978839-62978858 Msa0083830:intron 35.0%
TGAAGATGTTCGACATGTAA+GGG - chr1_2:62978908-62978927 Msa0083830:intron 35.0%
! GTTTATGTTTTCTAATGGCG+AGG + chr1_2:62979069-62979088 None:intergenic 35.0%
CAAAAATATGTGTCTGCTTG+AGG + chr1_2:62979145-62979164 None:intergenic 35.0%
TGCAAAGATCGAAAATGTAG+AGG - chr1_2:62979163-62979182 Msa0083830:intron 35.0%
ATTGTCTCTCGTGGAAATTT+GGG - chr1_2:62979367-62979386 Msa0083830:intron 35.0%
TACAGGGTATAATCCAGTAA+GGG + chr1_2:62979978-62979997 None:intergenic 35.0%
CTGTAGAAATGGTTTCTACA+GGG + chr1_2:62979994-62980013 None:intergenic 35.0%
ACTGTAGAAATGGTTTCTAC+AGG + chr1_2:62979995-62980014 None:intergenic 35.0%
GTAGAAACCATTTCTACAGT+TGG - chr1_2:62979995-62980014 Msa0083830:intron 35.0%
!! TGGTAGGAAGTGTTGTTTAA+AGG + chr1_2:62980053-62980072 None:intergenic 35.0%
! TGTCACTTGTTAGTTATCTG+CGG - chr1_2:62980107-62980126 Msa0083830:intron 35.0%
! AGTGTTGTTATATATGGGGA+AGG - chr1_2:62980964-62980983 Msa0083830:intron 35.0%
! GTGTTGTTATATATGGGGAA+GGG - chr1_2:62980965-62980984 Msa0083830:intron 35.0%
!! GAGGTTTTAATATCGTTCCT+TGG + chr1_2:62980994-62981013 None:intergenic 35.0%
!!! GAATTTGCCTTTTTTTGTGC+AGG - chr1_2:62981088-62981107 Msa0083830:intron 35.0%
ATTTCTCTCTCCTTCATCAC+TGG - chr1_2:62975737-62975756 Msa0083830:three_prime_UTR 40.0%
TAGGTTCCTCAAGAAGCAAA+GGG + chr1_2:62975822-62975841 None:intergenic 40.0%
ATAGGTTCCTCAAGAAGCAA+AGG + chr1_2:62975823-62975842 None:intergenic 40.0%
TGCTTCTTGAGGAACCTATT+AGG - chr1_2:62975824-62975843 Msa0083830:three_prime_UTR 40.0%
TCTTGAGGAACCTATTAGGA+TGG - chr1_2:62975828-62975847 Msa0083830:three_prime_UTR 40.0%
! TGTGTTGTTGTTGTCCAGTA+TGG - chr1_2:62976009-62976028 Msa0083830:intron 40.0%
CTTGTCTTCTTCTGTGTGTT+TGG - chr1_2:62976108-62976127 Msa0083830:intron 40.0%
ACCTTAGCTAAATGGAATGG+AGG - chr1_2:62977065-62977084 Msa0083830:intron 40.0%
CCTTAGCTAAATGGAATGGA+GGG - chr1_2:62977066-62977085 Msa0083830:intron 40.0%
ACAAAGACATGCAACTTGCA+AGG + chr1_2:62977180-62977199 None:intergenic 40.0%
! AATGTCTCTTGGTGGTATTC+TGG + chr1_2:62977276-62977295 None:intergenic 40.0%
AGAATACCACCAAGAGACAT+TGG - chr1_2:62977275-62977294 Msa0083830:intron 40.0%
AAGCACAAAAAAACTCTGCG+CGG - chr1_2:62977320-62977339 Msa0083830:intron 40.0%
!! TCAGAAGGTATTTGCACGTA+TGG + chr1_2:62977443-62977462 None:intergenic 40.0%
TACGTGCAAATACCTTCTGA+AGG - chr1_2:62977443-62977462 Msa0083830:CDS 40.0%
ACGTGCAAATACCTTCTGAA+GGG - chr1_2:62977444-62977463 Msa0083830:CDS 40.0%
CAGGTTATGCTAGATACTGT+AGG - chr1_2:62977506-62977525 Msa0083830:CDS 40.0%
TGTCTGCTTCAAGGGTAATT+GGG + chr1_2:62977565-62977584 None:intergenic 40.0%
AAGTGATGTGTCTGCTTCAA+GGG + chr1_2:62977573-62977592 None:intergenic 40.0%
GTAGCTTCTTTGTTCTGATC+TGG + chr1_2:62977605-62977624 None:intergenic 40.0%
GAAAGGCCGCTAAAATTTAC+TGG + chr1_2:62977641-62977660 None:intergenic 40.0%
AAGGTAGACTGACCTTTGAA+AGG + chr1_2:62977658-62977677 None:intergenic 40.0%
AACAACTTCTGTATGGCTAG+AGG - chr1_2:62977844-62977863 Msa0083830:intron 40.0%
AAAAACGATGCGACACTTTC+TGG - chr1_2:62978345-62978364 Msa0083830:intron 40.0%
CATTGATGTAATCAAGCTGC+AGG + chr1_2:62978522-62978541 None:intergenic 40.0%
ACTTAGGTAATACGCACATG+GGG - chr1_2:62978840-62978859 Msa0083830:intron 40.0%
ACTTCCTCTCATTATACACC+CGG - chr1_2:62978880-62978899 Msa0083830:intron 40.0%
CTGAAGATGTTCGACATGTA+AGG - chr1_2:62978907-62978926 Msa0083830:intron 40.0%
GAGAGAACATAAAACGTAGC+AGG + chr1_2:62978939-62978958 None:intergenic 40.0%
CTGCTTGAGGTCTTCAAATT+TGG + chr1_2:62979132-62979151 None:intergenic 40.0%
TGTGAACTACAGCATTTGTC+TGG + chr1_2:62979238-62979257 None:intergenic 40.0%
GAGATATTGAGAGAAGCAGA+TGG - chr1_2:62979340-62979359 Msa0083830:intron 40.0%
CATTGTCTCTCGTGGAAATT+TGG - chr1_2:62979366-62979385 Msa0083830:intron 40.0%
TTGTCTCTCGTGGAAATTTG+GGG - chr1_2:62979368-62979387 Msa0083830:intron 40.0%
AAGTAGATACCAACCTTCTC+AGG + chr1_2:62979406-62979425 None:intergenic 40.0%
!! AGAAGGTTGGTATCTACTTC+CGG - chr1_2:62979407-62979426 Msa0083830:intron 40.0%
ATTACCATCCAATACCGCAT+TGG + chr1_2:62979717-62979736 None:intergenic 40.0%
TCCGGTCTGATCTAAGTTAT+GGG - chr1_2:62979780-62979799 Msa0083830:intron 40.0%
CTACAGGGTATAATCCAGTA+AGG + chr1_2:62979979-62979998 None:intergenic 40.0%
GCAGATAACTAACAAGTGAC+AGG + chr1_2:62980108-62980127 None:intergenic 40.0%
ATTATTCTACTGCACTGTCC+AGG - chr1_2:62980262-62980281 Msa0083830:intron 40.0%
GATTGTAAACTTTCTCTGCC+TGG + chr1_2:62980283-62980302 None:intergenic 40.0%
! ATTGATTCCATGTGGCTCAT+CGG + chr1_2:62980347-62980366 None:intergenic 40.0%
!! AGGAAGCTATTGATTCCATG+TGG + chr1_2:62980355-62980374 None:intergenic 40.0%
AACAGATGCCTTAACCTTGA+CGG + chr1_2:62980495-62980514 None:intergenic 40.0%
ATGACTGTCATATCCGAATG+TGG + chr1_2:62980678-62980697 None:intergenic 40.0%
TGAAGACAAATCAACTCCGA+TGG - chr1_2:62980832-62980851 Msa0083830:intron 40.0%
! TTGAAGGTTGCTTTAGACCA+TGG - chr1_2:62981143-62981162 Msa0083830:intron 40.0%
! CTTTCTGGCAAACAACAACT+CGG + chr1_2:62981199-62981218 None:intergenic 40.0%
!! GTTGTTGTTTGCCAGAAAGT+TGG - chr1_2:62981200-62981219 Msa0083830:intron 40.0%
AGGATGGAAGCCATCCTAAT+AGG + chr1_2:62975841-62975860 None:intergenic 45.0%
GAGATACTGACAGGTTTGGA+TGG + chr1_2:62975868-62975887 None:intergenic 45.0%
GATGGAGATACTGACAGGTT+TGG + chr1_2:62975872-62975891 None:intergenic 45.0%
AGAGAGATGGAGATACTGAC+AGG + chr1_2:62975877-62975896 None:intergenic 45.0%
CTACACCTCCAGAACCAATT+TGG - chr1_2:62976231-62976250 Msa0083830:CDS 45.0%
! GAAGTGGTCCAAATTGGTTC+TGG + chr1_2:62976242-62976261 None:intergenic 45.0%
ACATTCCTGCATCAAGGCAT+CGG + chr1_2:62976705-62976724 None:intergenic 45.0%
TACCAGACATTCCTGCATCA+AGG + chr1_2:62976711-62976730 None:intergenic 45.0%
CCCTCCATTCCATTTAGCTA+AGG + chr1_2:62977069-62977088 None:intergenic 45.0%
ATGGAGGGAGTAACACTTTG+TGG - chr1_2:62977081-62977100 Msa0083830:intron 45.0%
CTTACCATATGCCAGTTGCA+CGG - chr1_2:62977229-62977248 Msa0083830:intron 45.0%
! TTGCACGGTTTGACTTCTCA+TGG - chr1_2:62977244-62977263 Msa0083830:intron 45.0%
! TGCACGGTTTGACTTCTCAT+GGG - chr1_2:62977245-62977264 Msa0083830:intron 45.0%
GTGTCTGCTTCAAGGGTAAT+TGG + chr1_2:62977566-62977585 None:intergenic 45.0%
CAAGTGATGTGTCTGCTTCA+AGG + chr1_2:62977574-62977593 None:intergenic 45.0%
ATTATGCAGGCCGTGAAGAA+GGG - chr1_2:62977779-62977798 Msa0083830:CDS 45.0%
TTTCACAATACAGGTCAGCG+AGG - chr1_2:62978293-62978312 Msa0083830:intron 45.0%
CTTAGGTAATACGCACATGG+GGG - chr1_2:62978841-62978860 Msa0083830:intron 45.0%
TTAGGTAATACGCACATGGG+GGG - chr1_2:62978842-62978861 Msa0083830:intron 45.0%
! TGCGTCCGATTTTCATTTGC+AGG - chr1_2:62979091-62979110 Msa0083830:intron 45.0%
ACGGGCCTGCAAATGAAAAT+CGG + chr1_2:62979099-62979118 None:intergenic 45.0%
GATGGTATCATTGTCTCTCG+TGG - chr1_2:62979358-62979377 Msa0083830:intron 45.0%
AGATACCAACCTTCTCAGGT+GGG + chr1_2:62979402-62979421 None:intergenic 45.0%
TAGATACCAACCTTCTCAGG+TGG + chr1_2:62979403-62979422 None:intergenic 45.0%
AGACGCAGGAATGCTGTAAA+AGG + chr1_2:62979515-62979534 None:intergenic 45.0%
AACGTATACTAGAGAGACGC+AGG + chr1_2:62979529-62979548 None:intergenic 45.0%
! CAATACCGCATTGGCAACAT+CGG + chr1_2:62979708-62979727 None:intergenic 45.0%
GTCCGGTCTGATCTAAGTTA+TGG - chr1_2:62979779-62979798 Msa0083830:intron 45.0%
CCCCATAACTTAGATCAGAC+CGG + chr1_2:62979784-62979803 None:intergenic 45.0%
CCGGTCTGATCTAAGTTATG+GGG - chr1_2:62979781-62979800 Msa0083830:intron 45.0%
GCAGTGATGCAATTCTCCTT+GGG - chr1_2:62979945-62979964 Msa0083830:intron 45.0%
CAGTGATGCAATTCTCCTTG+GGG - chr1_2:62979946-62979965 Msa0083830:intron 45.0%
CTAACAAGTGACAGGATCAC+AGG + chr1_2:62980100-62980119 None:intergenic 45.0%
TGGTGAGAAATGTACTGCAG+AGG + chr1_2:62980375-62980394 None:intergenic 45.0%
TGCTCGAACCTGTATGTTTC+AGG + chr1_2:62980471-62980490 None:intergenic 45.0%
ATCATCTGCTTCACCTCATC+TGG - chr1_2:62980515-62980534 Msa0083830:intron 45.0%
ACAGATATCACAGGCATGGT+TGG + chr1_2:62980798-62980817 None:intergenic 45.0%
GGAATGACGACAGATATCAC+AGG + chr1_2:62980807-62980826 None:intergenic 45.0%
!! ATCATTCTTACAGGGTGTCG+AGG + chr1_2:62980927-62980946 None:intergenic 45.0%
TATATGGGGAAGGGTAACCA+AGG - chr1_2:62980974-62980993 Msa0083830:intron 45.0%
GATTCGGCCTGCACAAAAAA+AGG + chr1_2:62981098-62981117 None:intergenic 45.0%
! TTAGACCATGGCAAGGCTTT+TGG - chr1_2:62981155-62981174 Msa0083830:intron 45.0%
CAAACAACAACTCGGTCATG+TGG + chr1_2:62981191-62981210 None:intergenic 45.0%
TTCCTCAAGAAGCAAAGGGC+TGG + chr1_2:62975818-62975837 None:intergenic 50.0%
!! AGGTTTGGATGGCTCTAGGA+TGG + chr1_2:62975857-62975876 None:intergenic 50.0%
TGACAGGTTTGGATGGCTCT+AGG + chr1_2:62975861-62975880 None:intergenic 50.0%
!! GTGGTCCAAATTGGTTCTGG+AGG + chr1_2:62976239-62976258 None:intergenic 50.0%
ATTACCCGATGCCTTGATGC+AGG - chr1_2:62976697-62976716 Msa0083830:intron 50.0%
! CATTCCTGCATCAAGGCATC+GGG + chr1_2:62976704-62976723 None:intergenic 50.0%
TGCCTTGATGCAGGAATGTC+TGG - chr1_2:62976706-62976725 Msa0083830:intron 50.0%
CAAACCGTGCAACTGGCATA+TGG + chr1_2:62977236-62977255 None:intergenic 50.0%
GAGAAGTCAAACCGTGCAAC+TGG + chr1_2:62977243-62977262 None:intergenic 50.0%
! GCACGGTTTGACTTCTCATG+GGG - chr1_2:62977246-62977265 Msa0083830:intron 50.0%
CTTCACGGCCTGCATAATCA+TGG + chr1_2:62977777-62977796 None:intergenic 50.0%
GATTATGCAGGCCGTGAAGA+AGG - chr1_2:62977778-62977797 Msa0083830:CDS 50.0%
ATACAGGTCAGCGAGGTGAA+TGG - chr1_2:62978300-62978319 Msa0083830:intron 50.0%
GATAGATCTCCCACCTGAGA+AGG - chr1_2:62979390-62979409 Msa0083830:intron 50.0%
AGCAACCGATGTTGCCAATG+CGG - chr1_2:62979700-62979719 Msa0083830:intron 50.0%
CGATGTTGCCAATGCGGTAT+TGG - chr1_2:62979706-62979725 Msa0083830:intron 50.0%
! GTTGCCAATGCGGTATTGGA+TGG - chr1_2:62979710-62979729 Msa0083830:intron 50.0%
GGCAGTGATGCAATTCTCCT+TGG - chr1_2:62979944-62979963 Msa0083830:intron 50.0%
TCTGCTTCACCTCATCTGGA+AGG - chr1_2:62980519-62980538 Msa0083830:intron 50.0%
CTGCTTCACCTCATCTGGAA+GGG - chr1_2:62980520-62980539 Msa0083830:intron 50.0%
GACGACAGATATCACAGGCA+TGG + chr1_2:62980802-62980821 None:intergenic 50.0%
CAACTCCGATGGACATTCAC+CGG - chr1_2:62980843-62980862 Msa0083830:intron 50.0%
CGGCAGTCACTTATTGTGAG+AGG - chr1_2:62980879-62980898 Msa0083830:intron 50.0%
! GAGAGGTCTTTTCCCTATGC+TGG - chr1_2:62980896-62980915 Msa0083830:intron 50.0%
! AGGTCTTTTCCCTATGCTGG+CGG - chr1_2:62980899-62980918 Msa0083830:intron 50.0%
! GCACAGCATTTTCCCGATTG+AGG + chr1_2:62981013-62981032 None:intergenic 50.0%
CAATCGGGAAAATGCTGTGC+AGG - chr1_2:62981013-62981032 Msa0083830:intron 50.0%
! GGTTGCTTTAGACCATGGCA+AGG - chr1_2:62981148-62981167 Msa0083830:intron 50.0%
TGATGCCAAAAGCCTTGCCA+TGG + chr1_2:62981163-62981182 None:intergenic 50.0%
CTGACGAGTCACCAACTTTC+TGG + chr1_2:62981214-62981233 None:intergenic 50.0%
GTCCAGCCCTTTGCTTCTTG+AGG - chr1_2:62975813-62975832 Msa0083830:three_prime_UTR 55.0%
CGTGCCGGGTGTATAATGAG+AGG + chr1_2:62978887-62978906 None:intergenic 55.0%
TCGAACATCTTCAGCGTGCC+GGG + chr1_2:62978901-62978920 None:intergenic 55.0%
GTCGAACATCTTCAGCGTGC+CGG + chr1_2:62978902-62978921 None:intergenic 55.0%
GATCTCCCACCTGAGAAGGT+TGG - chr1_2:62979394-62979413 Msa0083830:intron 55.0%
ACCACGCGTGTGACAACAAC+GGG + chr1_2:62979641-62979660 None:intergenic 55.0%
GACCACGCGTGTGACAACAA+CGG + chr1_2:62979642-62979661 None:intergenic 55.0%
TCGGTTGCTTCAGCACGAGT+AGG + chr1_2:62979689-62979708 None:intergenic 55.0%
TCGAGCAGCCGTCAAGGTTA+AGG - chr1_2:62980484-62980503 Msa0083830:intron 55.0%
!! AGGCACCGGTGAATGTCCAT+CGG + chr1_2:62980851-62980870 None:intergenic 55.0%
GACATTCACCGGTGCCTTTC+AGG - chr1_2:62980854-62980873 Msa0083830:intron 55.0%
AAGTGACTGCCGAGCCTGAA+AGG + chr1_2:62980871-62980890 None:intergenic 55.0%
GTGCAGGCTGAGTCGAATAC+TGG - chr1_2:62981029-62981048 Msa0083830:intron 55.0%
GTGCAGGCCGAATCGAATAC+TGG - chr1_2:62981104-62981123 Msa0083830:intron 55.0%
CAGTAAGGGTCTCTGCCCCA+AGG + chr1_2:62979964-62979983 None:intergenic 60.0%
CTTGGGGCAGAGACCCTTAC+TGG - chr1_2:62979962-62979981 Msa0083830:intron 60.0%
ACAGGTTCGAGCAGCCGTCA+AGG - chr1_2:62980478-62980497 Msa0083830:intron 60.0%
CCTTGCAGCCCTTCCAGATG+AGG + chr1_2:62980531-62980550 None:intergenic 60.0%
CCTCATCTGGAAGGGCTGCA+AGG - chr1_2:62980528-62980547 Msa0083830:intron 60.0%
TCACCGGTGCCTTTCAGGCT+CGG - chr1_2:62980859-62980878 Msa0083830:intron 60.0%
GTCGAGGATCCGCCAGCATA+GGG + chr1_2:62980911-62980930 None:intergenic 60.0%
TGTCGAGGATCCGCCAGCAT+AGG + chr1_2:62980912-62980931 None:intergenic 60.0%
GCCCGTTGTTGTCACACGCG+TGG - chr1_2:62979637-62979656 Msa0083830:intron 65.0%
GGGAGAGCCGATGAGCCACA+TGG - chr1_2:62980337-62980356 Msa0083830:intron 65.0%
! CTGCCGAGCCTGAAAGGCAC+CGG + chr1_2:62980865-62980884 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62975717 62981406 62975717 ID=Msa0083830;Name=Msa0083830
chr1_2 mRNA 62975717 62981406 62975717 ID=Msa0083830-mRNA-1;Parent=Msa0083830;Name=Msa0083830-mRNA-1;_AED=0.17;_eAED=0.17;_QI=91|1|1|1|0.78|0.86|15|144|526
chr1_2 exon 62975717 62976013 62975717 ID=Msa0083830-mRNA-1:exon:21051;Parent=Msa0083830-mRNA-1
chr1_2 exon 62976188 62976347 62976188 ID=Msa0083830-mRNA-1:exon:21050;Parent=Msa0083830-mRNA-1
chr1_2 exon 62976574 62976641 62976574 ID=Msa0083830-mRNA-1:exon:21049;Parent=Msa0083830-mRNA-1
chr1_2 exon 62976744 62976839 62976744 ID=Msa0083830-mRNA-1:exon:21048;Parent=Msa0083830-mRNA-1
chr1_2 exon 62977090 62977178 62977090 ID=Msa0083830-mRNA-1:exon:21047;Parent=Msa0083830-mRNA-1
chr1_2 exon 62977392 62977536 62977392 ID=Msa0083830-mRNA-1:exon:21046;Parent=Msa0083830-mRNA-1
chr1_2 exon 62977712 62977801 62977712 ID=Msa0083830-mRNA-1:exon:21045;Parent=Msa0083830-mRNA-1
chr1_2 exon 62977939 62978010 62977939 ID=Msa0083830-mRNA-1:exon:21044;Parent=Msa0083830-mRNA-1
chr1_2 exon 62978200 62978277 62978200 ID=Msa0083830-mRNA-1:exon:21043;Parent=Msa0083830-mRNA-1
chr1_2 exon 62978686 62978817 62978686 ID=Msa0083830-mRNA-1:exon:21042;Parent=Msa0083830-mRNA-1
chr1_2 exon 62979258 62979335 62979258 ID=Msa0083830-mRNA-1:exon:21041;Parent=Msa0083830-mRNA-1
chr1_2 exon 62979459 62979614 62979459 ID=Msa0083830-mRNA-1:exon:21040;Parent=Msa0083830-mRNA-1
chr1_2 exon 62979782 62979879 62979782 ID=Msa0083830-mRNA-1:exon:21039;Parent=Msa0083830-mRNA-1
chr1_2 exon 62980396 62980492 62980396 ID=Msa0083830-mRNA-1:exon:21038;Parent=Msa0083830-mRNA-1
chr1_2 exon 62981247 62981406 62981247 ID=Msa0083830-mRNA-1:exon:21037;Parent=Msa0083830-mRNA-1
chr1_2 five_prime_UTR 62981316 62981406 62981316 ID=Msa0083830-mRNA-1:five_prime_utr;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62981247 62981315 62981247 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62980396 62980492 62980396 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62979782 62979879 62979782 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62979459 62979614 62979459 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62979258 62979335 62979258 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62978686 62978817 62978686 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62978200 62978277 62978200 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62977939 62978010 62977939 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62977712 62977801 62977712 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62977392 62977536 62977392 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62977090 62977178 62977090 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62976744 62976839 62976744 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62976574 62976641 62976574 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62976188 62976347 62976188 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 CDS 62975861 62976013 62975861 ID=Msa0083830-mRNA-1:cds;Parent=Msa0083830-mRNA-1
chr1_2 three_prime_UTR 62975717 62975860 62975717 ID=Msa0083830-mRNA-1:three_prime_utr;Parent=Msa0083830-mRNA-1
Gene Sequence

>Msa0083830

ATGCAGTCCAGCCCTTTGCTTCTTGAGGAACCTATTAGGATGGCTTCCATCCTAGAGCCATCCAAACCTACTTTCTTTCCAGCTATGACAAAAATTATAGGCACACTTGGTTCGAAGTCACGATCAGTTGATACAATTACCCGATGCCTTGATGCAGGAATGTCTGTTGCACGGTTTGACTTCTCATGGGGTGATCCAGAATACCACCAAGAGACATTGGAAAATTTAAGGGCTGCTATCAAAAGCACAAAAAAACTCTGCGCGGTTATGCTAGATACTGTAGGTCCAGAATTACAAGTCGTGAATAAAACTGATCGCCCAATTACCCTTGAAGCAGACACATCACTTGTCTTAACTCCAGATCAGAACAAAGAAGCTACTTCAAATCTATTACCAGTAAATTTTAGCGGCCTTTCAAAGGCCGTGAAGAAGGGTGATACTATTTTTATCGGTAAATATCTGTTTACAGGAAGTGAAACAACTTCTGTATGGCTAGAGGTCAGCGAGGTGAATGGTGATGATGTGACTTGTCTCATAAAAAACGATGCGACACTTTCTGGATCATTGTATACTTTACATGTCTCTCAGATTCGTATCGATCTTCCTACTCTTACTGATAAGGATAAAGAGGTAATACGCACATGGGGGGTTCGAAACAAAATAGACTTCCTCTCATTATACACCCGGCACGCTGAAGATGTTCGACATGCCCGTGAATATTTCTCCAAATTTGAAGACCTCAAGCAGACACATATTTTTGCAAAGATCGAAAATGTAGAGGGATTGAAACATTTTGATGAGATATTGAGAGAAGCAGATGGTATCATTGTCTCTCGTGGAAATTTGGGGATAGATCTCCCACCTGAGAAGGTGTTTTTGTTCCAAAAAGCTGCTATTTATAAGTGTAACATGGCGGGAAAGCCCGTTGTTGTCACACGCGTGGTCGATACTATGACTAATAATCTGAGACCTACTCGTGCTGAAGCAACCGATGTTGCCAATGCGGTATTGGATGGCAGTGATGCAATTCTCCTTGGGGCAGAGACCCTTACTGGATTATACCCTGTAGAAACCATTTCTACAGTTGGAAAAATTTGTGCTGAAGCAGAGAAAGTTTACAATCAAGATTTGTATTTTAAGAAGACTGTCAAATTTGTGGGAGAGCCGATGAGCCACATGGAATCAATAGCTTCCTCTGCAGTTCGAGCAGCCGTCAAGGTTAAGGCATCTGTTATCATCTGCTTCACCTCATCTGGAAGGGCTGCAAGGTTGCTTGCTAAGTACAGACCAACCATGCCTGTGATATCTGTCGTCATTCCTCAATTGAAGACAAATCAACTCCGATGGACATTCACCGGTGCCTTTCAGGCTCGGCAGTCACTTATTGTGAGAGGTCTTTTCCCTATGCTGGCGGATCCTCGACACCCTGCCGAATCGAATACTGGATCAAATGAATCAATCTTGAAGGTTGCTTTAGACCATGGCAAGGCTTTTGGCATCATAAAACCACATGACCGAGTTGTTGTTTGCCAGAAAGTTGGTGACTCGTCAGTTGTGAAGATTATTGAACTTGAAGATTAG

Protein sequence

>Msa0083830

MQSSPLLLEEPIRMASILEPSKPTFFPAMTKIIGTLGSKSRSVDTITRCLDAGMSVARFDFSWGDPEYHQETLENLRAAIKSTKKLCAVMLDTVGPELQVVNKTDRPITLEADTSLVLTPDQNKEATSNLLPVNFSGLSKAVKKGDTIFIGKYLFTGSETTSVWLEVSEVNGDDVTCLIKNDATLSGSLYTLHVSQIRIDLPTLTDKDKEVIRTWGVRNKIDFLSLYTRHAEDVRHAREYFSKFEDLKQTHIFAKIENVEGLKHFDEILREADGIIVSRGNLGIDLPPEKVFLFQKAAIYKCNMAGKPVVVTRVVDTMTNNLRPTRAEATDVANAVLDGSDAILLGAETLTGLYPVETISTVGKICAEAEKVYNQDLYFKKTVKFVGEPMSHMESIASSAVRAAVKVKASVIICFTSSGRAARLLAKYRPTMPVISVVIPQLKTNQLRWTFTGAFQARQSLIVRGLFPMLADPRHPAESNTGSNESILKVALDHGKAFGIIKPHDRVVVCQKVGDSSVVKIIELED*