AlfalfaGEDB | Msa0088280

M. sativa cultivar zhongmu-4 / Msa0088280

KEGG: K08867
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088280	XP_013469851.1	97.884	709	15	0	53	761	1	709	0.0	1464

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088280	sp\|Q9CAV6\|WNK1_ARATH	53.088	761	242	21	53	760	1	699	0.0	712

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088280	A0A072VPH6	97.884	709	15	0	53	761	1	709	0.0	1464

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0088280	Msa0179560	0.932405	8.953606e-95	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088280	MtrunA17_Chr1g0205471	97.884	709	15	0	53	761	1	709	0.0	1464
Msa0088280	MtrunA17_Chr1g0190951	57.708	759	254	19	53	761	1	742	0.0	798
Msa0088280	MtrunA17_Chr7g0273851	56.739	742	272	14	53	761	1	726	0.0	780
Msa0088280	MtrunA17_Chr3g0116811	61.395	430	131	6	63	489	13	410	5.80e-173	509
Msa0088280	MtrunA17_Chr5g0432541	54.588	425	153	7	62	483	13	400	9.73e-157	467
Msa0088280	MtrunA17_Chr8g0346511	48.134	536	258	9	63	593	25	545	1.78e-153	462
Msa0088280	MtrunA17_Chr3g0119911	54.042	433	179	6	60	483	4	425	4.00e-151	454
Msa0088280	MtrunA17_Chr7g0244601	45.472	519	231	7	66	578	18	490	6.47e-148	446
Msa0088280	MtrunA17_Chr6g0455931	53.547	437	157	6	47	480	5	398	1.82e-145	439
Msa0088280	MtrunA17_Chr3g0129771	48.312	474	177	7	56	491	13	456	3.93e-144	437

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0088280	AT3G04910.1	53.088	761	242	21	53	760	1	699	712
Msa0088280	AT3G04910.2	51.928	726	234	21	88	760	13	676	657
Msa0088280	AT5G28080.2	62.672	509	147	10	53	546	2	482	620
Msa0088280	AT3G22420.4	52.716	626	201	12	49	666	68	606	613
Msa0088280	AT3G22420.1	53.055	622	197	12	53	666	1	535	612
Msa0088280	AT3G22420.3	50.536	653	201	13	49	666	68	633	598
Msa0088280	AT3G22420.5	50.847	649	197	13	53	666	1	562	597
Msa0088280	AT3G22420.6	50.459	654	197	13	53	666	1	567	594
Msa0088280	AT3G22420.2	48.458	681	197	14	53	666	1	594	579
Msa0088280	AT5G28080.8	56.385	509	142	11	53	546	2	445	531

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Find 152 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTGAAGACCTTGAG+AGG	0.577546	1_2:-69378830	Msa0088280:CDS
AAACATAATTCGGAATCATT+TGG	0.395568	1_2:+69376208	None:intergenic
AAACTTGCACTTGAATCTTC+CGG	0.376328	1_2:+69376873	None:intergenic
AAAGGTAGGAGAAGAGATGA+TGG	0.571802	1_2:-69377259	Msa0088280:CDS
AAATCGACTGTTCACTGTGT+TGG	0.543815	1_2:-69378167	Msa0088280:intron
AAATCTATGCCTTGTTGTCT+AGG	0.423936	1_2:-69381221	Msa0088280:CDS
AACAAGCTAAATTACATCTA+TGG	0.368206	1_2:+69375927	None:intergenic
AACAAGGCATAGATTTCACA+AGG	0.680497	1_2:+69381228	None:intergenic
AACACAATAACACATTATTA+CGG	0.490107	1_2:-69376290	Msa0088280:CDS
AACCAAGGAGAAGTCAAAAT+TGG	0.356242	1_2:-69378218	Msa0088280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAACACAATTTGTATGGA+TGG	+	chr1_2:69375950-69375969	None:intergenic	30.0%
GAAACATCTGCTTTCTTATA+TGG	+	chr1_2:69376269-69376288	None:intergenic	30.0%
TTGCTACTATTTAGGTGATT+TGG	+	chr1_2:69376426-69376445	None:intergenic	30.0%
CATATTAACCCAACCAATTA+TGG	+	chr1_2:69376734-69376753	None:intergenic	30.0%
AAAGTAAAATATACTCCCTC+CGG	-	chr1_2:69376909-69376928	Msa0088280:CDS	30.0%
TTGCATTGAAAAGTGAAATG+GGG	-	chr1_2:69377135-69377154	Msa0088280:intron	30.0%
AATAGCTCAATAATTTGGGA+AGG	-	chr1_2:69377178-69377197	Msa0088280:intron	30.0%
AGACATATAATATGAGATGG+AGG	-	chr1_2:69377436-69377455	Msa0088280:CDS	30.0%
TACAATGAAATTCTTGGCAA+AGG	-	chr1_2:69377950-69377969	Msa0088280:CDS	30.0%
GTATCATATCCTTAATCTCT+TGG	-	chr1_2:69377992-69378011	Msa0088280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	69375757	69381321	69375757	ID=Msa0088280;Name=Msa0088280
chr1_2	mRNA	69375757	69381321	69375757	ID=Msa0088280-mRNA-1;Parent=Msa0088280;Name=Msa0088280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.85\|0.75\|0.87\|1\|1\|8\|326\|761
chr1_2	exon	69375757	69377080	69375757	ID=Msa0088280-mRNA-1:exon:23800;Parent=Msa0088280-mRNA-1
chr1_2	exon	69377224	69377638	69377224	ID=Msa0088280-mRNA-1:exon:23799;Parent=Msa0088280-mRNA-1
chr1_2	exon	69377868	69378025	69377868	ID=Msa0088280-mRNA-1:exon:23798;Parent=Msa0088280-mRNA-1
chr1_2	exon	69378168	69378385	69378168	ID=Msa0088280-mRNA-1:exon:23797;Parent=Msa0088280-mRNA-1
chr1_2	exon	69378696	69378923	69378696	ID=Msa0088280-mRNA-1:exon:23796;Parent=Msa0088280-mRNA-1
chr1_2	exon	69379091	69379128	69379091	ID=Msa0088280-mRNA-1:exon:23795;Parent=Msa0088280-mRNA-1
chr1_2	exon	69379227	69379356	69379227	ID=Msa0088280-mRNA-1:exon:23794;Parent=Msa0088280-mRNA-1
chr1_2	exon	69381221	69381321	69381221	ID=Msa0088280-mRNA-1:exon:23793;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69381221	69381321	69381221	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69379227	69379356	69379227	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69379091	69379128	69379091	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69378696	69378923	69378696	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69378168	69378385	69378168	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69377868	69378025	69377868	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69377224	69377638	69377224	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	CDS	69376083	69377080	69376083	ID=Msa0088280-mRNA-1:cds;Parent=Msa0088280-mRNA-1
chr1_2	three_prime_UTR	69375757	69376082	69375757	ID=Msa0088280-mRNA-1:three_prime_utr;Parent=Msa0088280-mRNA-1

Gene Sequence

>Msa0088280

ATGAGATGTAAAAAGAGAGTCAGGTTTTGTCTGGCAAGCGTGGTGGGGATGCATGAGTTATCACTCTCCTACCTTGTGAAATCTATGCCTTGTTGTCTAGGAAGAGCAAGTGAAAGCCTTGGTGCAAAGAACATAACAGATAATAAGAAGCAAAACATGAATGTTGCTGCAAGTGTGGAGGCAGAGGACTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTGCAAGACAGTATATAGAGCATTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGATTTTTTGCAAAATTCTGAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTTGAGACATTGAAGCACAAGAATATCATGAAGTTCTACACTTCATGGGTTGATACTACCAACAGAAACATTAACTTTGTCACTGAGATGTTCACATCTGGGACTCTTAGACAGTATAGACTTAAACATAAAAGAGTTAACATCAGAGCAGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGTCTTGTCTATCTCCACAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTCGGCCTTGCTGCAATTCTCCGCAAATCGACTGTTCACTGTGTTGGAACACCTGAGTTTATGGCACCAGAAGTGTATGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATTTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATATACAAAAAAGTTGTCTCTGGAAAGATGCCAGAATCTCTTTACAAAGTAAATGATCCAGAGGTCAAGCAGTTTGTAGAGAAATGCTTAGCAACTGTATCCCTTAGACTTTCAGCTAAGGAACTCTTAAAGGACCCTTTTCTCCAAATTGATGATTATGAGTATAACTTCAAAGAATTGCAGTATCAAAGAGATTGCTATGAAGTATCACCAACAATTAGACAGCAACCTATGAATGGAAATTATAGCGTTAGAAATGCCTTAATGAGTGTGTACACTGATAATCTTGGTGGTTATCAAGATGATTTTGAAACAAGTGAAATTGATCTCTTTGATTGTGAAGAGGATGATAATTTGGATGAAGTTGACACCTCAATCAAAGGTAGGAGAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAGGAAGGCCGAGTTCGAAATATCTACTTCCCATTTGACACGGAGACTGATACCGCATTGAGTGTTGCATCTGAAATGGTAGCAGAGCTTGATATAACTGACCAAGATGTAACAATTTTAGCAAATATGATAGATAATGAAATTGCAACTTTGGTACCAGGATGGAAAAGGGGACCAATGATAGACGAAATTCCGGAAGATTCAAGTGCAAGTTTCTGCCTTAATTGTGCTGCAAATAATACCTTGGTTGATTATGTATCATCAAATAATCCATGTACCAAGAATCTTCAATTCTTTCATTGTTCTAAAAATGGATGTGCTGCGGTTCACGGCCGATTCGAGGAGATCACATACCAATATGAAGGGTCTGCAAACACTGCTACAGAAGGTGCACCACCAAGTCAATCCAATGGCATTCATTATGCAGATATTTGTGCTCTGCGAGATGAACATGAGTCAAGTCATGAAGGATTGAAAGATATACACTGCGATGAATCTCATGACATATCAAAAATATCAACCATAAAGGAGGAGGAAGAGGAGAGAAGTGTTAATGTGGATGACCAAATTGATGTTAATACCAAAAAACCTCCTTCTGGCCCTGCAGCATCAGAAAATTTATTACTCTTGGGCTATGAAAATGATATAAGGCAGGAATTGAGATGGCTCAAAGTAAGGTACCAAATGCAGTTAAGAGAGCTTAGAGACCATCAATTAGAGCATGGAAAAGATGGATTTCTGAGGCCACCAGCTAAGGTATCACACATGAAGATACAACACAATAACACATTATTACGGTCTATGGCTTATAAGAAGCATTATTCAGTTGATGCTGAGAAATGCAACACTTTGGCTGACCAAATGATTCCGAATTATGTTTATGAAATGAGTCAGCCTAACAATTCTGAGCAAATGGTCACAGCCAAGGATTTCTTTGCAAGAGCTTTGCTTCCAAACTCGCTTCAAAGGGCAACCTCGCTTCCGGTTGATGCAATTGATCTCTAG

Protein sequence

>Msa0088280

MRCKKRVRFCLASVVGMHELSLSYLVKSMPCCLGRASESLGAKNITDNKKQNMNVAASVEAEDSEFIEVDPTGRYGRYNEILGKGACKTVYRAFDEYEGIEVAWNQVKLYDFLQNSEDLERLYCEIHLLETLKHKNIMKFYTSWVDTTNRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLVYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSTVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPESLYKVNDPEVKQFVEKCLATVSLRLSAKELLKDPFLQIDDYEYNFKELQYQRDCYEVSPTIRQQPMNGNYSVRNALMSVYTDNLGGYQDDFETSEIDLFDCEEDDNLDEVDTSIKGRRRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVASEMVAELDITDQDVTILANMIDNEIATLVPGWKRGPMIDEIPEDSSASFCLNCAANNTLVDYVSSNNPCTKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANTATEGAPPSQSNGIHYADICALRDEHESSHEGLKDIHCDESHDISKISTIKEEEEERSVNVDDQIDVNTKKPPSGPAASENLLLLGYENDIRQELRWLKVRYQMQLRELRDHQLEHGKDGFLRPPAKVSHMKIQHNNTLLRSMAYKKHYSVDAEKCNTLADQMIPNYVYEMSQPNNSEQMVTAKDFFARALLPNSLQRATSLPVDAIDL*