Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0090830 | XP_013470289.1 | 99.578 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 1.97e-174 | 489 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0090830 | sp|Q9M4T8|PSA5_SOYBN | 97.890 | 237 | 5 | 0 | 1 | 237 | 1 | 237 | 7.97e-175 | 483 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0090830 | I3SSX1 | 99.578 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 9.39e-175 | 489 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0090830 | Msa0724530 | 0.814284 | 1.666011e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0090830 | MtrunA17_Chr1g0210811 | 99.578 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 1.81e-178 | 489 |
Msa0090830 | MtrunA17_Chr6g0453891 | 62.150 | 214 | 64 | 5 | 31 | 237 | 133 | 336 | 6.24e-75 | 230 |
Msa0090830 | MtrunA17_Chr7g0243311 | 45.161 | 217 | 107 | 5 | 8 | 218 | 5 | 215 | 3.16e-58 | 184 |
Msa0090830 | MtrunA17_Chr5g0401801 | 44.550 | 211 | 109 | 4 | 8 | 213 | 5 | 212 | 8.88e-55 | 175 |
Msa0090830 | MtrunA17_Chr2g0283841 | 39.914 | 233 | 130 | 5 | 6 | 234 | 2 | 228 | 6.22e-50 | 163 |
Msa0090830 | MtrunA17_Chr8g0371571 | 41.150 | 226 | 125 | 4 | 8 | 231 | 4 | 223 | 6.29e-50 | 163 |
Msa0090830 | MtrunA17_Chr0c02g0489661 | 35.526 | 228 | 142 | 2 | 6 | 231 | 4 | 228 | 1.40e-47 | 157 |
Msa0090830 | MtrunA17_Chr1g0155371 | 46.154 | 182 | 93 | 2 | 3 | 184 | 1 | 177 | 3.22e-47 | 157 |
Msa0090830 | MtrunA17_Chr8g0360781 | 34.199 | 231 | 142 | 5 | 8 | 231 | 9 | 236 | 1.28e-40 | 139 |
Msa0090830 | MtrunA17_Chr2g0308541 | 32.900 | 231 | 145 | 5 | 8 | 231 | 9 | 236 | 7.96e-39 | 135 |
Msa0090830 | MtrunA17_Chr6g0459741 | 34.783 | 207 | 120 | 2 | 6 | 206 | 6 | 203 | 2.38e-38 | 134 |
Msa0090830 | MtrunA17_Chr4g0004521 | 37.143 | 175 | 91 | 4 | 22 | 185 | 7 | 173 | 3.86e-26 | 102 |
Msa0090830 | MtrunA17_Chr4g0027841 | 34.239 | 184 | 97 | 7 | 11 | 184 | 91 | 260 | 5.42e-18 | 81.3 |
Msa0090830 | MtrunA17_Chr3g0116161 | 28.313 | 166 | 107 | 3 | 34 | 196 | 54 | 210 | 1.40e-14 | 71.2 |
Msa0090830 | MtrunA17_Chr5g0394931 | 30.464 | 151 | 94 | 3 | 45 | 192 | 13 | 155 | 1.20e-12 | 64.7 |
Msa0090830 | MtrunA17_Chr5g0399161 | 28.249 | 177 | 114 | 4 | 42 | 213 | 10 | 178 | 1.35e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0090830 | AT3G14290.1 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.85e-175 | 481 |
Msa0090830 | AT1G53850.1 | 96.624 | 237 | 8 | 0 | 1 | 237 | 1 | 237 | 1.07e-174 | 479 |
Msa0090830 | AT1G53850.2 | 96.624 | 237 | 8 | 0 | 1 | 237 | 1 | 237 | 1.07e-174 | 479 |
Msa0090830 | AT3G22110.1 | 41.494 | 241 | 123 | 7 | 8 | 236 | 5 | 239 | 1.65e-56 | 181 |
Msa0090830 | AT1G16470.1 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.83e-47 | 157 |
Msa0090830 | AT1G16470.2 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.83e-47 | 157 |
Msa0090830 | AT1G79210.1 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.84e-47 | 157 |
Msa0090830 | AT1G79210.2 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.84e-47 | 157 |
Msa0090830 | AT1G79210.3 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.84e-47 | 157 |
Msa0090830 | AT5G66140.1 | 42.500 | 200 | 109 | 3 | 8 | 205 | 4 | 199 | 2.81e-47 | 157 |
Msa0090830 | AT3G51260.2 | 41.791 | 201 | 111 | 3 | 7 | 205 | 3 | 199 | 8.53e-47 | 155 |
Msa0090830 | AT3G51260.1 | 42.000 | 200 | 110 | 3 | 8 | 205 | 4 | 199 | 1.34e-46 | 155 |
Msa0090830 | AT5G42790.1 | 39.506 | 243 | 125 | 4 | 3 | 234 | 1 | 232 | 1.55e-46 | 156 |
Msa0090830 | AT1G47250.1 | 38.683 | 243 | 127 | 4 | 3 | 234 | 1 | 232 | 3.07e-46 | 155 |
Msa0090830 | AT5G35590.1 | 35.498 | 231 | 139 | 5 | 8 | 231 | 9 | 236 | 3.14e-41 | 141 |
Msa0090830 | AT2G27020.1 | 33.816 | 207 | 122 | 2 | 6 | 206 | 6 | 203 | 1.88e-38 | 134 |
Msa0090830 | AT2G05840.2 | 34.434 | 212 | 132 | 4 | 8 | 215 | 9 | 217 | 2.61e-37 | 130 |
Msa0090830 | AT2G05840.1 | 34.419 | 215 | 134 | 4 | 8 | 218 | 9 | 220 | 3.03e-37 | 131 |
Msa0090830 | AT2G27020.2 | 33.816 | 207 | 122 | 2 | 6 | 206 | 108 | 305 | 3.09e-37 | 134 |
Msa0090830 | AT4G15165.1 | 31.535 | 241 | 105 | 6 | 8 | 236 | 5 | 197 | 5.50e-35 | 124 |
Msa0090830 | AT2G05840.3 | 35.263 | 190 | 118 | 3 | 8 | 195 | 9 | 195 | 5.97e-35 | 124 |
Msa0090830 | AT3G26340.1 | 26.500 | 200 | 132 | 5 | 27 | 220 | 48 | 238 | 1.25e-14 | 71.6 |
Msa0090830 | AT1G13060.1 | 25.654 | 191 | 129 | 4 | 34 | 220 | 57 | 238 | 1.67e-13 | 68.6 |
Msa0090830 | AT4G14800.1 | 28.571 | 175 | 113 | 4 | 45 | 215 | 13 | 179 | 4.74e-12 | 63.5 |
Msa0090830 | AT5G40580.1 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 4.84e-12 | 64.3 |
Msa0090830 | AT5G40580.2 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 4.84e-12 | 64.3 |
Msa0090830 | AT3G27430.2 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 9.30e-12 | 63.5 |
Msa0090830 | AT3G27430.1 | 26.842 | 190 | 129 | 3 | 31 | 218 | 36 | 217 | 1.15e-11 | 63.2 |
Msa0090830 | AT4G14800.2 | 28.495 | 186 | 121 | 4 | 45 | 218 | 13 | 198 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATCCTTCTGGCACATTT+TGG | 0.189061 | 1_2:-72932678 | Msa0090830:CDS |
TCCCGAAGGACGTTTGTTTC+AGG | 0.228080 | 1_2:-72935577 | Msa0090830:CDS |
GTGACCTAGCCTTGCGCTTT+GGG | 0.251856 | 1_2:-72934165 | Msa0090830:CDS |
ATATGCAATTGAAGCTATTA+AGG | 0.287746 | 1_2:-72935550 | Msa0090830:intron |
CTTTGGCAGTCTCGACCATT+TGG | 0.312188 | 1_2:-72933705 | Msa0090830:intron |
GGAGCGGAGGGTTGAGAAAT+CGG | 0.323198 | 1_2:+72935850 | Msa0090840:CDS |
AGACTGAATATCAGAAAATA+TGG | 0.331191 | 1_2:+72931030 | None:intergenic |
GGAGTGTCTCTCCTTATTGC+TGG | 0.335194 | 1_2:-72933684 | Msa0090830:CDS |
TGTGACCTAGCCTTGCGCTT+TGG | 0.345737 | 1_2:-72934166 | Msa0090830:CDS |
CAGAATCACAGGTTCTCTTA+TGG | 0.347192 | 1_2:-72934226 | Msa0090830:CDS |
CAATGCAATGCAAAGGCTAT+TGG | 0.347609 | 1_2:-72932655 | Msa0090830:CDS |
TCTCGTCATGGCCAGCAATA+AGG | 0.348529 | 1_2:+72933673 | None:intergenic |
TAAAATAGTATCGCAGCGTT+TGG | 0.351558 | 1_2:-72930991 | Msa0090830:three_prime_UTR |
AATCAAATCACGCAAATAGA+TGG | 0.363237 | 1_2:+72931134 | None:intergenic |
CAGCAGTGTGGAGAAAATTA+TGG | 0.366170 | 1_2:-72934490 | Msa0090830:CDS |
ATCAATTCTGAAGCAAGTTA+TGG | 0.388035 | 1_2:-72931353 | Msa0090830:CDS |
TTGATTTGATTTGATTTGAA+TGG | 0.392394 | 1_2:+72935799 | None:intergenic |
AACCTGAAACAAACGTCCTT+CGG | 0.394934 | 1_2:+72935575 | None:intergenic |
CCAACAACGTTGACATTGCC+AGG | 0.408754 | 1_2:-72931223 | Msa0090830:CDS |
ACCTGAAACAAACGTCCTTC+GGG | 0.423347 | 1_2:+72935576 | None:intergenic |
GAAGAGAAAGAGTGTGAGAT+GGG | 0.423463 | 1_2:+72935880 | Msa0090840:CDS |
CCTGGCAATGTCAACGTTGT+TGG | 0.426746 | 1_2:+72931223 | None:intergenic |
AAAATAGTATCGCAGCGTTT+GGG | 0.438945 | 1_2:-72930990 | Msa0090830:three_prime_UTR |
CAGCTTGGATCAACTGCGAT+TGG | 0.442542 | 1_2:-72935441 | Msa0090830:CDS |
CTGGCAATGTCAACGTTGTT+GGG | 0.454160 | 1_2:+72931224 | None:intergenic |
GCGTATTACTTCGCCTCTAC+TGG | 0.457074 | 1_2:-72935379 | Msa0090830:intron |
AGATATTACACTGATCCTTC+TGG | 0.466365 | 1_2:-72932688 | Msa0090830:CDS |
CGCAAATAGATGGAAATCAT+AGG | 0.479822 | 1_2:+72931144 | None:intergenic |
GAGCGGAGGGTTGAGAAATC+GGG | 0.481377 | 1_2:+72935851 | Msa0090840:CDS |
AGAAGAGAAAGAGTGTGAGA+TGG | 0.487758 | 1_2:+72935879 | Msa0090840:CDS |
AATGCAAAGGCTATTGGTTC+AGG | 0.500036 | 1_2:-72932649 | Msa0090830:CDS |
TTTGATTTGATTTGAATGGA+TGG | 0.504082 | 1_2:+72935803 | None:intergenic |
CTAGCCTTGCGCTTTGGGGA+AGG | 0.509941 | 1_2:-72934160 | Msa0090830:CDS |
ATTGCTGGCCATGACGAGAA+TGG | 0.514622 | 1_2:-72933669 | Msa0090830:CDS |
TATATTATCGAGTGTGGAGA+TGG | 0.521151 | 1_2:-72930880 | Msa0090830:three_prime_UTR |
GGAATATATACTTACAGGCT+AGG | 0.527284 | 1_2:+72933645 | None:intergenic |
ATCACAGCTTCCACCTCAGA+CGG | 0.535599 | 1_2:+72931173 | None:intergenic |
TCACAGCTTCCACCTCAGAC+GGG | 0.536535 | 1_2:+72931174 | None:intergenic |
TCTTTATACCCCGTCTGAGG+TGG | 0.544181 | 1_2:-72931183 | Msa0090830:CDS |
CTTGAAAACGAAAGAGGGTG+TGG | 0.545014 | 1_2:-72935418 | Msa0090830:CDS |
ATGATACGCTGGAGCAACCC+TGG | 0.548475 | 1_2:+72931205 | None:intergenic |
TGAATATCAGAAAATATGGT+AGG | 0.556483 | 1_2:+72931034 | None:intergenic |
CTTCCCCAAAGCGCAAGGCT+AGG | 0.558153 | 1_2:+72934161 | None:intergenic |
TACCTAAAAGACCTCTCGCT+GGG | 0.559939 | 1_2:+72935912 | Msa0090840:CDS |
ATCTAGTATTGCATACAACT+TGG | 0.561296 | 1_2:+72931060 | None:intergenic |
TTACCTAAAAGACCTCTCGC+TGG | 0.564004 | 1_2:+72935911 | Msa0090840:CDS |
TAACCTTGTGAGAAACATGT+TGG | 0.566164 | 1_2:+72935770 | None:intergenic |
GAAGCAAGTTATGGAAGAGA+AGG | 0.568369 | 1_2:-72931344 | Msa0090830:intron |
GGCTAGGTCCATTCTCGTCA+TGG | 0.580425 | 1_2:+72933661 | None:intergenic |
ATAAGGAGAGACACTCCAAA+TGG | 0.589626 | 1_2:+72933690 | None:intergenic |
TGACCTAGCCTTGCGCTTTG+GGG | 0.590485 | 1_2:-72934164 | Msa0090830:CDS |
ATCACCTTCCCCAAAGCGCA+AGG | 0.591699 | 1_2:+72934156 | None:intergenic |
GCTATTGGTTCAGGATCAGA+AGG | 0.597231 | 1_2:-72932640 | Msa0090830:CDS |
GGAAGGTGATGAAGAATCCA+TGG | 0.599188 | 1_2:-72934143 | Msa0090830:intron |
CTAGTATATATTATCGAGTG+TGG | 0.602194 | 1_2:-72930886 | Msa0090830:three_prime_UTR |
GTTGTAGACTCTACAGTCAT+CGG | 0.602200 | 1_2:+72934199 | None:intergenic |
CACATTGGCTGTGCAATGAG+TGG | 0.606594 | 1_2:-72934456 | Msa0090830:CDS |
GATTGGCTTGAAAACGAAAG+AGG | 0.610207 | 1_2:-72935424 | Msa0090830:CDS |
CATTGCCAAAATGTGCCAGA+AGG | 0.618837 | 1_2:+72932673 | None:intergenic |
AAACCAACATGTTTCTCACA+AGG | 0.620638 | 1_2:-72935773 | Msa0090830:intron |
ATGGAAATTGATGATCACAT+TGG | 0.621320 | 1_2:-72934471 | Msa0090830:CDS |
GAATAGGTACATACCAGTAG+AGG | 0.625077 | 1_2:+72935366 | None:intergenic |
ATTGGCTTGAAAACGAAAGA+GGG | 0.626167 | 1_2:-72935423 | Msa0090830:CDS |
TCATCTTTATACCCCGTCTG+AGG | 0.634475 | 1_2:-72931186 | Msa0090830:CDS |
CAACAACGTTGACATTGCCA+GGG | 0.635659 | 1_2:-72931222 | Msa0090830:CDS |
CACAGCTTCCACCTCAGACG+GGG | 0.645540 | 1_2:+72931175 | None:intergenic |
GGGGTATAAAGATGATACGC+TGG | 0.658506 | 1_2:+72931194 | None:intergenic |
GCATGCACGAGTTGAAACTC+AGG | 0.662565 | 1_2:-72934403 | Msa0090830:intron |
CTTTCAGGAGCCCAGCAGTG+TGG | 0.675944 | 1_2:-72934502 | Msa0090830:intron |
ATTAGAACTGAGTATGACCG+TGG | 0.689159 | 1_2:-72935615 | Msa0090830:intron |
TCTGCAAGAACAATTCAACA+AGG | 0.713271 | 1_2:-72932605 | Msa0090830:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTGTTAATTTTTTTTTTGT+TGG | - | chr1_2:72931272-72931291 | Msa0090830:intron | 10.0% |
!! | CAAAAAAAAAATTACATAAA+AGG | + | chr1_2:72931400-72931419 | None:intergenic | 10.0% |
!!! | TTTAGAATAAATTGAATTAT+GGG | - | chr1_2:72931718-72931737 | Msa0090830:intron | 10.0% |
!!! | TTTATAATTTAAAATGTTGT+TGG | - | chr1_2:72935218-72935237 | Msa0090830:intron | 10.0% |
!! | AATTCAATCATAAAAAAATT+AGG | - | chr1_2:72935911-72935930 | Msa0090830:five_prime_UTR | 10.0% |
!! | ATTCAATCATAAAAAAATTA+GGG | - | chr1_2:72935912-72935931 | Msa0090830:five_prime_UTR | 10.0% |
!!! | GTTTAGAATAAATTGAATTA+TGG | - | chr1_2:72931717-72931736 | Msa0090830:intron | 15.0% |
!! | TTAGAATAAATTGAATTATG+GGG | - | chr1_2:72931719-72931738 | Msa0090830:intron | 15.0% |
!!! | ATATTGATATTGATCTATTT+TGG | - | chr1_2:72932480-72932499 | Msa0090830:intron | 15.0% |
!!! | TTTTTTTATTAGTGTACAAA+TGG | - | chr1_2:72932903-72932922 | Msa0090830:intron | 15.0% |
!!! | TTTTTTATTAGTGTACAAAT+GGG | - | chr1_2:72932904-72932923 | Msa0090830:intron | 15.0% |
!!! | CTTTCTTATTATTTCTTTAA+TGG | - | chr1_2:72933555-72933574 | Msa0090830:intron | 15.0% |
!! | ATATCATTAAAATTATTAGC+TGG | - | chr1_2:72934211-72934230 | Msa0090830:CDS | 15.0% |
!! | TATCATTAAAATTATTAGCT+GGG | - | chr1_2:72934212-72934231 | Msa0090830:CDS | 15.0% |
!! | TATTAATTACCTTAATTCTT+TGG | - | chr1_2:72935082-72935101 | Msa0090830:intron | 15.0% |
!! | ATTAATTACCTTAATTCTTT+GGG | - | chr1_2:72935083-72935102 | Msa0090830:intron | 15.0% |
!! | AGTAAAAATATATAATAGCA+CGG | + | chr1_2:72935819-72935838 | None:intergenic | 15.0% |
!!! | TTGATTTGATTTGATTTGAA+TGG | + | chr1_2:72930944-72930963 | None:intergenic | 20.0% |
!! | ACAAAAATCCTAATACATTT+GGG | + | chr1_2:72931071-72931090 | None:intergenic | 20.0% |
!! | AACAAAAATCCTAATACATT+TGG | + | chr1_2:72931072-72931091 | None:intergenic | 20.0% |
!! | ACCCTAATAATAATAATAGA+GGG | + | chr1_2:72931223-72931242 | None:intergenic | 20.0% |
!! | AACCCTAATAATAATAATAG+AGG | + | chr1_2:72931224-72931243 | None:intergenic | 20.0% |
!! | AAAATTACATAAAAGGGAAT+AGG | + | chr1_2:72931393-72931412 | None:intergenic | 20.0% |
!! | AATAAATATGACTATAAGCA+CGG | + | chr1_2:72932161-72932180 | None:intergenic | 20.0% |
!! | AAATTGTAATGTATGTTTCA+TGG | + | chr1_2:72932203-72932222 | None:intergenic | 20.0% |
!!! | TGATTGATATTGATCTATTT+TGG | - | chr1_2:72932409-72932428 | Msa0090830:intron | 20.0% |
!!! | CAACAATAGATTTTAAGTTT+AGG | + | chr1_2:72932832-72932851 | None:intergenic | 20.0% |
!! | CTAAACTTAAAATCTATTGT+TGG | - | chr1_2:72932830-72932849 | Msa0090830:intron | 20.0% |
!! | ATATTAAACATTCCTATGAA+AGG | - | chr1_2:72932853-72932872 | Msa0090830:intron | 20.0% |
!! | ATAAAAAAACACCTTACAAA+AGG | + | chr1_2:72932892-72932911 | None:intergenic | 20.0% |
!!! | TACCATTTATTTTTTCTCTT+TGG | - | chr1_2:72933018-72933037 | Msa0090830:intron | 20.0% |
!! | ATTAGTTAAATTACAGAGAA+AGG | - | chr1_2:72933259-72933278 | Msa0090830:intron | 20.0% |
!! | ATGTTAAAACATTTCTAAAC+CGG | - | chr1_2:72933358-72933377 | Msa0090830:intron | 20.0% |
!! | AACAAAAATGAGAAAATTAC+AGG | + | chr1_2:72933407-72933426 | None:intergenic | 20.0% |
!! | ATAAAAAAGAAAGAAGTGAT+GGG | + | chr1_2:72933465-72933484 | None:intergenic | 20.0% |
!! | AATAAAAAAGAAAGAAGTGA+TGG | + | chr1_2:72933466-72933485 | None:intergenic | 20.0% |
!!! | ATTTATTTCCTTTTTCATTC+TGG | - | chr1_2:72933992-72934011 | Msa0090830:intron | 20.0% |
!! | TGTTAAATAGATACACAAAA+TGG | - | chr1_2:72934910-72934929 | Msa0090830:intron | 20.0% |
!! | TTAATTACCTTAATTCTTTG+GGG | - | chr1_2:72935084-72935103 | Msa0090830:intron | 20.0% |
!! | AAGAGTTGAATATGATTTAT+AGG | + | chr1_2:72935115-72935134 | None:intergenic | 20.0% |
!!! | AGAATATCAATATGATTTGT+AGG | + | chr1_2:72935139-72935158 | None:intergenic | 20.0% |
!! | TCATAAAAAAATTAGGGTAA+AGG | - | chr1_2:72935918-72935937 | Msa0090830:five_prime_UTR | 20.0% |
!! | CATAAAAAAATTAGGGTAAA+GGG | - | chr1_2:72935919-72935938 | Msa0090830:five_prime_UTR | 20.0% |
!!! | TTTGATTTGATTTGAATGGA+TGG | + | chr1_2:72930940-72930959 | None:intergenic | 25.0% |
!! | TAATTTTCCCCAAATGTATT+AGG | - | chr1_2:72931060-72931079 | Msa0090830:three_prime_UTR | 25.0% |
! | CAAAAATCCTAATACATTTG+GGG | + | chr1_2:72931070-72931089 | None:intergenic | 25.0% |
!!! | GTATTAGGATTTTTGTTTCT+AGG | - | chr1_2:72931075-72931094 | Msa0090830:three_prime_UTR | 25.0% |
! | ATATGCAATTGAAGCTATTA+AGG | - | chr1_2:72931190-72931209 | Msa0090830:CDS | 25.0% |
! | TGCCCTCTATTATTATTATT+AGG | - | chr1_2:72931218-72931237 | Msa0090830:CDS | 25.0% |
! | GCCCTCTATTATTATTATTA+GGG | - | chr1_2:72931219-72931238 | Msa0090830:CDS | 25.0% |
!!! | GGTTTTTAACTATCTGTATT+CGG | - | chr1_2:72931240-72931259 | Msa0090830:intron | 25.0% |
!!! | GTTTTTAACTATCTGTATTC+GGG | - | chr1_2:72931241-72931260 | Msa0090830:intron | 25.0% |
! | CACACATATATTTCTTACTT+GGG | + | chr1_2:72931666-72931685 | None:intergenic | 25.0% |
!! | TCAGAATTACATCTAAAACT+GGG | + | chr1_2:72932100-72932119 | None:intergenic | 25.0% |
!! | TTCAGAATTACATCTAAAAC+TGG | + | chr1_2:72932101-72932120 | None:intergenic | 25.0% |
! | AATAGAATGTTGTATGTAGT+TGG | - | chr1_2:72932377-72932396 | Msa0090830:intron | 25.0% |
! | TATAGAATGTTGTATGTAGT+TGG | - | chr1_2:72932437-72932456 | Msa0090830:intron | 25.0% |
!!! | TTTATTTTTCACAGAATCAC+AGG | - | chr1_2:72932503-72932522 | Msa0090830:intron | 25.0% |
! | TGCATATTCTGAATGTTTAA+TGG | - | chr1_2:72932759-72932778 | Msa0090830:intron | 25.0% |
! | TTGTAAAAGATACTTACTAG+TGG | - | chr1_2:72932959-72932978 | Msa0090830:intron | 25.0% |
! | TGCCAAAGAGAAAAAATAAA+TGG | + | chr1_2:72933023-72933042 | None:intergenic | 25.0% |
! | TAGATGGAATATATACTTAC+AGG | + | chr1_2:72933103-72933122 | None:intergenic | 25.0% |
!! | AAAAGAAAGTGTAACATACA+AGG | + | chr1_2:72933233-72933252 | None:intergenic | 25.0% |
!! | TATGTTACACTTTCTTTTCT+GGG | - | chr1_2:72933235-72933254 | Msa0090830:intron | 25.0% |
! | AAATTCTTGTCAAATATGTC+CGG | + | chr1_2:72933380-72933399 | None:intergenic | 25.0% |
!!! | TTTCTCATTTTTGTTTCACT+TGG | - | chr1_2:72933412-72933431 | Msa0090830:intron | 25.0% |
!!! | TTCACAAATACTTTTGAGAA+AGG | + | chr1_2:72933496-72933515 | None:intergenic | 25.0% |
! | GAAATAATAAGAAAGAGTGA+AGG | + | chr1_2:72933550-72933569 | None:intergenic | 25.0% |
!!! | TATTTTGATTTTGTAGGATC+AGG | - | chr1_2:72933915-72933934 | Msa0090830:intron | 25.0% |
! | ATTAAAATTATTAGCTGGGA+TGG | - | chr1_2:72934216-72934235 | Msa0090830:CDS | 25.0% |
!! | TGTTATTTGCAACAGTATTA+AGG | + | chr1_2:72935057-72935076 | None:intergenic | 25.0% |
! | AGACAAAAATATACAAGAGA+TGG | + | chr1_2:72935173-72935192 | None:intergenic | 25.0% |
!!! | ATCTCTTGTATATTTTTGTC+TGG | - | chr1_2:72935172-72935191 | Msa0090830:intron | 25.0% |
! | TTGCTTAAAGATTATCTTTC+AGG | - | chr1_2:72935267-72935286 | Msa0090830:intron | 25.0% |
!! | ATTGATTTATTATGTTGTGC+AGG | - | chr1_2:72935330-72935349 | Msa0090830:intron | 25.0% |
! | TTAGAATATATTCTCAGTAG+GGG | + | chr1_2:72935463-72935482 | None:intergenic | 25.0% |
! | GTTAGAATATATTCTCAGTA+GGG | + | chr1_2:72935464-72935483 | None:intergenic | 25.0% |
! | AGTTAGAATATATTCTCAGT+AGG | + | chr1_2:72935465-72935484 | None:intergenic | 25.0% |
! | TGAATATCAGAAAATATGGT+AGG | + | chr1_2:72935709-72935728 | None:intergenic | 25.0% |
! | AGACTGAATATCAGAAAATA+TGG | + | chr1_2:72935713-72935732 | None:intergenic | 25.0% |
AATAGATCGCTGCATAAAAA+TGG | + | chr1_2:72930917-72930936 | None:intergenic | 30.0% | |
!!! | TTTTTTGTTGGATTTCAGCT+TGG | - | chr1_2:72931284-72931303 | Msa0090830:intron | 30.0% |
ATGAAAATCTGCCCTAAAAA+GGG | + | chr1_2:72931619-72931638 | None:intergenic | 30.0% | |
GCACACATATATTTCTTACT+TGG | + | chr1_2:72931667-72931686 | None:intergenic | 30.0% | |
AATTGAATTATGGGGATATC+TGG | - | chr1_2:72931727-72931746 | Msa0090830:intron | 30.0% | |
! | ACTGCTGTTTGATAATTTGT+TGG | + | chr1_2:72931878-72931897 | None:intergenic | 30.0% |
TGTGTTAAAATTCCACTTTC+AGG | - | chr1_2:72932223-72932242 | Msa0090830:intron | 30.0% | |
! | ATGGAAATTGATGATCACAT+TGG | - | chr1_2:72932269-72932288 | Msa0090830:intron | 30.0% |
AGCTAAGAAGTTATATACCA+TGG | + | chr1_2:72932617-72932636 | None:intergenic | 30.0% | |
TATATATTCCATCTAAGCCA+TGG | - | chr1_2:72933108-72933127 | Msa0090830:intron | 30.0% | |
AACACAGAAAATGAGTCAAA+AGG | + | chr1_2:72933162-72933181 | None:intergenic | 30.0% | |
! | GTATGTTACACTTTCTTTTC+TGG | - | chr1_2:72933234-72933253 | Msa0090830:intron | 30.0% |
! | ATGTTACACTTTCTTTTCTG+GGG | - | chr1_2:72933236-72933255 | Msa0090830:intron | 30.0% |
! | GAGAATGATGCTATAGTTTT+AGG | - | chr1_2:72933584-72933603 | Msa0090830:intron | 30.0% |
! | GTAAATACATCTTTTCTGTG+CGG | - | chr1_2:72933640-72933659 | Msa0090830:intron | 30.0% |
TTCTTGTTCAAACTAGTTCA+TGG | - | chr1_2:72933723-72933742 | Msa0090830:intron | 30.0% | |
TTGAGTCTCAAATCCTAATT+GGG | + | chr1_2:72933810-72933829 | None:intergenic | 30.0% | |
ATTGAGTCTCAAATCCTAAT+TGG | + | chr1_2:72933811-72933830 | None:intergenic | 30.0% | |
!! | TGCATTAATTTGTCTGTGAT+GGG | + | chr1_2:72933857-72933876 | None:intergenic | 30.0% |
AGAAAATAATTGCACAGCAT+GGG | - | chr1_2:72933892-72933911 | Msa0090830:intron | 30.0% | |
!!! | CATGGGTATTTTGATTTTGT+AGG | - | chr1_2:72933909-72933928 | Msa0090830:intron | 30.0% |
!! | GGTTTTTCAATAGAACATCA+CGG | + | chr1_2:72934464-72934483 | None:intergenic | 30.0% |
TATAAGCGAGACTATTAAGA+AGG | + | chr1_2:72934518-72934537 | None:intergenic | 30.0% | |
TTCTACCATCTTTCTACTAT+AGG | - | chr1_2:72934654-72934673 | Msa0090830:intron | 30.0% | |
TCATCTATAGTAGAAAGATG+GGG | + | chr1_2:72934685-72934704 | None:intergenic | 30.0% | |
GTCATCTATAGTAGAAAGAT+GGG | + | chr1_2:72934686-72934705 | None:intergenic | 30.0% | |
! | AAATTCTTTTAGACGCAGAA+AGG | + | chr1_2:72934738-72934757 | None:intergenic | 30.0% |
TTTCTGCGTCTAAAAGAATT+TGG | - | chr1_2:72934737-72934756 | Msa0090830:intron | 30.0% | |
TTCTGCGTCTAAAAGAATTT+GGG | - | chr1_2:72934738-72934757 | Msa0090830:intron | 30.0% | |
AAAAGAATTTGGGCTCTATT+TGG | - | chr1_2:72934748-72934767 | Msa0090830:intron | 30.0% | |
TCTCCATTTCTCAAAACAAA+TGG | + | chr1_2:72934879-72934898 | None:intergenic | 30.0% | |
AAGATTATCTTTCAGGATAG+AGG | - | chr1_2:72935274-72935293 | Msa0090830:intron | 30.0% | |
GACATGAAAACAAGTGAATT+TGG | - | chr1_2:72935306-72935325 | Msa0090830:intron | 30.0% | |
!! | ATCAATTCTGAAGCAAGTTA+TGG | - | chr1_2:72935387-72935406 | Msa0090830:CDS | 30.0% |
TAGAATATATTCTCAGTAGG+GGG | + | chr1_2:72935462-72935481 | None:intergenic | 30.0% | |
AATCAAATCACGCAAATAGA+TGG | + | chr1_2:72935609-72935628 | None:intergenic | 30.0% | |
ATCTAGTATTGCATACAACT+TGG | + | chr1_2:72935683-72935702 | None:intergenic | 30.0% | |
CTAGTATATATTATCGAGTG+TGG | - | chr1_2:72935854-72935873 | Msa0090830:five_prime_UTR | 30.0% | |
!!! | GTGTGATATGGGCTTTTTTA+TGG | + | chr1_2:72930782-72930801 | None:intergenic | 35.0% |
! | GATTTTTCGCAGTGTGATAT+GGG | + | chr1_2:72930793-72930812 | None:intergenic | 35.0% |
AAACCAACATGTTTCTCACA+AGG | - | chr1_2:72930967-72930986 | Msa0090830:three_prime_UTR | 35.0% | |
TAACCTTGTGAGAAACATGT+TGG | + | chr1_2:72930973-72930992 | None:intergenic | 35.0% | |
TAAAAGAGAGAGAGAGGAAA+GGG | + | chr1_2:72930998-72931017 | None:intergenic | 35.0% | |
ATAAAAGAGAGAGAGAGGAA+AGG | + | chr1_2:72930999-72931018 | None:intergenic | 35.0% | |
! | CTCAGTTCTAATTCATTCAC+AGG | + | chr1_2:72931117-72931136 | None:intergenic | 35.0% |
TTAACTATCTGTATTCGGGT+TGG | - | chr1_2:72931245-72931264 | Msa0090830:intron | 35.0% | |
!! | ATTGGCTTGAAAACGAAAGA+GGG | - | chr1_2:72931317-72931336 | Msa0090830:intron | 35.0% |
!!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1_2:72931510-72931529 | None:intergenic | 35.0% |
TCTTGTGTAAAAACAGGGTA+AGG | - | chr1_2:72931509-72931528 | Msa0090830:intron | 35.0% | |
CATACAATACACCAAATGGT+GGG | - | chr1_2:72931535-72931554 | Msa0090830:intron | 35.0% | |
!!! | TACCCTTTTTTGCCCTTTTT+AGG | - | chr1_2:72931604-72931623 | Msa0090830:intron | 35.0% |
!!! | ACCCTTTTTTGCCCTTTTTA+GGG | - | chr1_2:72931605-72931624 | Msa0090830:intron | 35.0% |
GATGAAAATCTGCCCTAAAA+AGG | + | chr1_2:72931620-72931639 | None:intergenic | 35.0% | |
CATTATTAACCTCACCATAG+CGG | + | chr1_2:72931793-72931812 | None:intergenic | 35.0% | |
AAGTTTGTGGACATTTCACA+TGG | + | chr1_2:72932037-72932056 | None:intergenic | 35.0% | |
AAAACTGGGTATAACACGTT+TGG | + | chr1_2:72932086-72932105 | None:intergenic | 35.0% | |
! | ATAATTTTCTCCACACTGCT+GGG | + | chr1_2:72932251-72932270 | None:intergenic | 35.0% |
TGCTTACAGTGCTTTCTTTA+AGG | - | chr1_2:72932665-72932684 | Msa0090830:CDS | 35.0% | |
TTCAGAATATGCAACACACA+AGG | + | chr1_2:72932752-72932771 | None:intergenic | 35.0% | |
!! | ATACTTACTAGTGGTGTTGT+TGG | - | chr1_2:72932968-72932987 | Msa0090830:intron | 35.0% |
GGAATATATACTTACAGGCT+AGG | + | chr1_2:72933098-72933117 | None:intergenic | 35.0% | |
GTGTAACATACAAGGAACAA+CGG | + | chr1_2:72933225-72933244 | None:intergenic | 35.0% | |
AATTACAGAGAAAGGACATG+TGG | - | chr1_2:72933267-72933286 | Msa0090830:intron | 35.0% | |
! | AAGAACAGTCGCAATTTTTC+TGG | - | chr1_2:72933303-72933322 | Msa0090830:intron | 35.0% |
GGATATTCATATGCAAAGAG+TGG | - | chr1_2:72933324-72933343 | Msa0090830:intron | 35.0% | |
!! | TTTTGTTTCACTTGGTTCCT+TGG | - | chr1_2:72933420-72933439 | Msa0090830:intron | 35.0% |
TGTATTTACGCACACATCAA+TGG | + | chr1_2:72933629-72933648 | None:intergenic | 35.0% | |
GTTTCCTGTTATGGTTCAAA+AGG | + | chr1_2:72933762-72933781 | None:intergenic | 35.0% | |
CCACTAAATGTTTCCTGTTA+TGG | + | chr1_2:72933771-72933790 | None:intergenic | 35.0% | |
CCATAACAGGAAACATTTAG+TGG | - | chr1_2:72933768-72933787 | Msa0090830:intron | 35.0% | |
AGGAAACATTTAGTGGTAGT+TGG | - | chr1_2:72933775-72933794 | Msa0090830:intron | 35.0% | |
TGAGTCTCAAATCCTAATTG+GGG | + | chr1_2:72933809-72933828 | None:intergenic | 35.0% | |
! | TAATTTGTCTGTGATGGGAA+TGG | + | chr1_2:72933852-72933871 | None:intergenic | 35.0% |
!! | CTGCATTAATTTGTCTGTGA+TGG | + | chr1_2:72933858-72933877 | None:intergenic | 35.0% |
CAGAAAATAATTGCACAGCA+TGG | - | chr1_2:72933891-72933910 | Msa0090830:intron | 35.0% | |
CCAATAGTCCAGAATGAAAA+AGG | + | chr1_2:72934003-72934022 | None:intergenic | 35.0% | |
!! | CCTTTTTCATTCTGGACTAT+TGG | - | chr1_2:72934000-72934019 | Msa0090830:intron | 35.0% |
AGATATTACACTGATCCTTC+TGG | - | chr1_2:72934052-72934071 | Msa0090830:intron | 35.0% | |
!! | ATTTTGGCAATGCAATGCAA+AGG | - | chr1_2:72934078-72934097 | Msa0090830:intron | 35.0% |
TCTGCAAGAACAATTCAACA+AGG | - | chr1_2:72934135-72934154 | Msa0090830:intron | 35.0% | |
TAATAAGCTGGAGAAAGACA+TGG | + | chr1_2:72934485-72934504 | None:intergenic | 35.0% | |
TCTCCAGCTTATTAATCTCT+AGG | - | chr1_2:72934491-72934510 | Msa0090830:CDS | 35.0% | |
! | GTCTCGCTTATAGTTTTTCT+AGG | - | chr1_2:72934526-72934545 | Msa0090830:intron | 35.0% |
AGTCAAATCACTAGAGATAG+GGG | + | chr1_2:72934556-72934575 | None:intergenic | 35.0% | |
GAGTCAAATCACTAGAGATA+GGG | + | chr1_2:72934557-72934576 | None:intergenic | 35.0% | |
CTCCTTACTACAAAATCCAT+AGG | - | chr1_2:72934595-72934614 | Msa0090830:intron | 35.0% | |
! | GACCTATGGATTTTGTAGTA+AGG | + | chr1_2:72934600-72934619 | None:intergenic | 35.0% |
AAATTAGACTCAGGTGGTTT+GGG | + | chr1_2:72934636-72934655 | None:intergenic | 35.0% | |
AGATGGTAGAAATTAGACTC+AGG | + | chr1_2:72934645-72934664 | None:intergenic | 35.0% | |
CAGTACCTATAGTAGAAAGA+TGG | + | chr1_2:72934662-72934681 | None:intergenic | 35.0% | |
CGTCATCTATAGTAGAAAGA+TGG | + | chr1_2:72934687-72934706 | None:intergenic | 35.0% | |
!!! | GCTCCATTTGTTTTGAGAAA+TGG | - | chr1_2:72934873-72934892 | Msa0090830:intron | 35.0% |
TAACAACTCTCCTCATTATG+GGG | + | chr1_2:72934973-72934992 | None:intergenic | 35.0% | |
GTAACAACTCTCCTCATTAT+GGG | + | chr1_2:72934974-72934993 | None:intergenic | 35.0% | |
CATATAGATCCAAGAATTCC+AGG | + | chr1_2:72934996-72935015 | None:intergenic | 35.0% | |
AACTGGAAGTAACATGCATT+TGG | + | chr1_2:72935433-72935452 | None:intergenic | 35.0% | |
CTCTTCTGTACTTTCACATT+AGG | - | chr1_2:72935488-72935507 | Msa0090830:intron | 35.0% | |
CGCAAATAGATGGAAATCAT+AGG | + | chr1_2:72935599-72935618 | None:intergenic | 35.0% | |
TAAAATAGTATCGCAGCGTT+TGG | - | chr1_2:72935749-72935768 | Msa0090830:intron | 35.0% | |
AAAATAGTATCGCAGCGTTT+GGG | - | chr1_2:72935750-72935769 | Msa0090830:intron | 35.0% | |
TATATTATCGAGTGTGGAGA+TGG | - | chr1_2:72935860-72935879 | Msa0090830:five_prime_UTR | 35.0% | |
! | CGATTTTTCGCAGTGTGATA+TGG | + | chr1_2:72930794-72930813 | None:intergenic | 40.0% |
! | GAAGAGAAAGAGTGTGAGAT+GGG | + | chr1_2:72930863-72930882 | None:intergenic | 40.0% |
! | AGAAGAGAAAGAGTGTGAGA+TGG | + | chr1_2:72930864-72930883 | None:intergenic | 40.0% |
AGATCGCTGCATAAAAATGG+CGG | + | chr1_2:72930914-72930933 | None:intergenic | 40.0% | |
ATTAGAACTGAGTATGACCG+TGG | - | chr1_2:72931125-72931144 | Msa0090830:three_prime_UTR | 40.0% | |
!! | GAGAAAAAGTGTTGACTCCA+CGG | + | chr1_2:72931145-72931164 | None:intergenic | 40.0% |
AACCTGAAACAAACGTCCTT+CGG | + | chr1_2:72931168-72931187 | None:intergenic | 40.0% | |
!! | GATTGGCTTGAAAACGAAAG+AGG | - | chr1_2:72931316-72931335 | Msa0090830:intron | 40.0% |
GAATAGGTACATACCAGTAG+AGG | + | chr1_2:72931377-72931396 | None:intergenic | 40.0% | |
!! | TTTAGGGCAGATTTTCATCG+AGG | - | chr1_2:72931424-72931443 | Msa0090830:intron | 40.0% |
! | TTAGGGCAGATTTTCATCGA+GGG | - | chr1_2:72931425-72931444 | Msa0090830:intron | 40.0% |
ACAGCCTCTTGTGTAAAAAC+AGG | - | chr1_2:72931503-72931522 | Msa0090830:intron | 40.0% | |
CAGCCTCTTGTGTAAAAACA+GGG | - | chr1_2:72931504-72931523 | Msa0090830:intron | 40.0% | |
GCTGCATACAATACACCAAA+TGG | - | chr1_2:72931531-72931550 | Msa0090830:intron | 40.0% | |
GCATACAATACACCAAATGG+TGG | - | chr1_2:72931534-72931553 | Msa0090830:intron | 40.0% | |
GCCCTAAAAAGGGCAAAAAA+GGG | + | chr1_2:72931609-72931628 | None:intergenic | 40.0% | |
TGCCCTAAAAAGGGCAAAAA+AGG | + | chr1_2:72931610-72931629 | None:intergenic | 40.0% | |
CGCTATGGTGAGGTTAATAA+TGG | - | chr1_2:72931791-72931810 | Msa0090830:intron | 40.0% | |
ATAACGTCAGTTTAGCAGTG+CGG | - | chr1_2:72931825-72931844 | Msa0090830:intron | 40.0% | |
GTGAAATGTCCACAAACTTG+CGG | - | chr1_2:72932038-72932057 | Msa0090830:intron | 40.0% | |
! | CATAATTTTCTCCACACTGC+TGG | + | chr1_2:72932252-72932271 | None:intergenic | 40.0% |
CAGCAGTGTGGAGAAAATTA+TGG | - | chr1_2:72932250-72932269 | Msa0090830:intron | 40.0% | |
CAGAATCACAGGTTCTCTTA+TGG | - | chr1_2:72932514-72932533 | Msa0090830:intron | 40.0% | |
GTTGTAGACTCTACAGTCAT+CGG | + | chr1_2:72932544-72932563 | None:intergenic | 40.0% | |
! | CATGCAAGTTCACAGGTTTT+GGG | + | chr1_2:72932691-72932710 | None:intergenic | 40.0% |
! | TCATGCAAGTTCACAGGTTT+TGG | + | chr1_2:72932692-72932711 | None:intergenic | 40.0% |
CAGTGGCTTAATCCTTTCAT+AGG | + | chr1_2:72932868-72932887 | None:intergenic | 40.0% | |
! | TAAGCCACTGTCCTTTTGTA+AGG | - | chr1_2:72932878-72932897 | Msa0090830:intron | 40.0% |
AACACCTTACAAAAGGACAG+TGG | + | chr1_2:72932885-72932904 | None:intergenic | 40.0% | |
ATAAGGAGAGACACTCCAAA+TGG | + | chr1_2:72933053-72933072 | None:intergenic | 40.0% | |
AGAAGTAACCATGGCTTAGA+TGG | + | chr1_2:72933119-72933138 | None:intergenic | 40.0% | |
ACATGACTCAGAAGTAACCA+TGG | + | chr1_2:72933128-72933147 | None:intergenic | 40.0% | |
TGCAAAGAGTGGTTAATGAG+TGG | - | chr1_2:72933335-72933354 | Msa0090830:intron | 40.0% | |
! | AAGATGGCATGTTACTTCCA+AGG | + | chr1_2:72933440-72933459 | None:intergenic | 40.0% |
CACACATCAATGGTAAGAGT+AGG | + | chr1_2:72933619-72933638 | None:intergenic | 40.0% | |
ACACTGCATTGTTCAACTCT+CGG | - | chr1_2:72933674-72933693 | Msa0090830:CDS | 40.0% | |
ACTAGTTCATGGTAGCAACA+TGG | - | chr1_2:72933734-72933753 | Msa0090830:intron | 40.0% | |
GAGTCTCAAATCCTAATTGG+GGG | + | chr1_2:72933808-72933827 | None:intergenic | 40.0% | |
TCAGCAGTCACTAGATGATA+CGG | - | chr1_2:72933948-72933967 | Msa0090830:intron | 40.0% | |
CAATGCAATGCAAAGGCTAT+TGG | - | chr1_2:72934085-72934104 | Msa0090830:intron | 40.0% | |
!! | AATGCAAAGGCTATTGGTTC+AGG | - | chr1_2:72934091-72934110 | Msa0090830:intron | 40.0% |
AGGTATCCATGTTCTTACAG+TGG | - | chr1_2:72934155-72934174 | Msa0090830:CDS | 40.0% | |
GGTATCCATGTTCTTACAGT+GGG | - | chr1_2:72934156-72934175 | Msa0090830:CDS | 40.0% | |
AACAACCCACTGTAAGAACA+TGG | + | chr1_2:72934164-72934183 | None:intergenic | 40.0% | |
TATTAGCTGGGATGGTAAAG+TGG | - | chr1_2:72934224-72934243 | Msa0090830:CDS | 40.0% | |
! | ATCTCCATTTTCTCCACAGT+TGG | + | chr1_2:72934291-72934310 | None:intergenic | 40.0% |
! | GCATGCACTAAATTTGAGAC+TGG | + | chr1_2:72934316-72934335 | None:intergenic | 40.0% |
GTGCATGCAGATTCAAAACA+TGG | - | chr1_2:72934328-72934347 | Msa0090830:intron | 40.0% | |
CTTATCTCACTAAGTGGAGT+CGG | - | chr1_2:72934419-72934438 | Msa0090830:CDS | 40.0% | |
GGACCTAGAGATTAATAAGC+TGG | + | chr1_2:72934497-72934516 | None:intergenic | 40.0% | |
GGAGTCAAATCACTAGAGAT+AGG | + | chr1_2:72934558-72934577 | None:intergenic | 40.0% | |
AGTAAGGAGAGTAGATCAGA+TGG | + | chr1_2:72934584-72934603 | None:intergenic | 40.0% | |
GAAATTAGACTCAGGTGGTT+TGG | + | chr1_2:72934637-72934656 | None:intergenic | 40.0% | |
TGGTAGAAATTAGACTCAGG+TGG | + | chr1_2:72934642-72934661 | None:intergenic | 40.0% | |
ACGCAGAAAGGATCTTAAGA+GGG | + | chr1_2:72934726-72934745 | None:intergenic | 40.0% | |
GGTAACAACTCTCCTCATTA+TGG | + | chr1_2:72934975-72934994 | None:intergenic | 40.0% | |
TAATGAGGAGAGTTGTTACC+TGG | - | chr1_2:72934975-72934994 | Msa0090830:intron | 40.0% | |
GAGTTGTTACCTGGAATTCT+TGG | - | chr1_2:72934984-72935003 | Msa0090830:intron | 40.0% | |
GAAGCAAGTTATGGAAGAGA+AGG | - | chr1_2:72935396-72935415 | Msa0090830:CDS | 40.0% | |
! | CGCGTTTGCAAAGCTTTTTA+TGG | - | chr1_2:72935886-72935905 | Msa0090830:five_prime_UTR | 40.0% |
TACCTAAAAGACCTCTCGCT+GGG | + | chr1_2:72930831-72930850 | None:intergenic | 45.0% | |
TTACCTAAAAGACCTCTCGC+TGG | + | chr1_2:72930832-72930851 | None:intergenic | 45.0% | |
GTGCGATAAAAGAGAGAGAG+AGG | + | chr1_2:72931004-72931023 | None:intergenic | 45.0% | |
!!! | GTCAACACTTTTTCTCCCGA+AGG | - | chr1_2:72931149-72931168 | Msa0090830:exon | 45.0% |
ACCTGAAACAAACGTCCTTC+GGG | + | chr1_2:72931167-72931186 | None:intergenic | 45.0% | |
CTTGAAAACGAAAGAGGGTG+TGG | - | chr1_2:72931322-72931341 | Msa0090830:intron | 45.0% | |
! | TAGGGCAGATTTTCATCGAG+GGG | - | chr1_2:72931426-72931445 | Msa0090830:intron | 45.0% |
! | TTTTCATCGAGGGGTAACCT+TGG | - | chr1_2:72931435-72931454 | Msa0090830:intron | 45.0% |
GCAACTGGTATGTGACTGTA+AGG | - | chr1_2:72931459-72931478 | Msa0090830:intron | 45.0% | |
GGTATGTGACTGTAAGGTCA+CGG | - | chr1_2:72931465-72931484 | Msa0090830:intron | 45.0% | |
GTATGTGACTGTAAGGTCAC+GGG | - | chr1_2:72931466-72931485 | Msa0090830:intron | 45.0% | |
! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_2:72931499-72931518 | None:intergenic | 45.0% |
AAGGGCAAAAAAGGGTAACC+CGG | + | chr1_2:72931601-72931620 | None:intergenic | 45.0% | |
! | TCATCCCTCTATCCCACTTT+TGG | - | chr1_2:72931897-72931916 | Msa0090830:intron | 45.0% |
!! | CATCCCTCTATCCCACTTTT+GGG | - | chr1_2:72931898-72931917 | Msa0090830:intron | 45.0% |
!! | ATCCCTCTATCCCACTTTTG+GGG | - | chr1_2:72931899-72931918 | Msa0090830:intron | 45.0% |
AACCCCAAAAGTGGGATAGA+GGG | + | chr1_2:72931904-72931923 | None:intergenic | 45.0% | |
GACTACGCACATGTTTGTCT+TGG | - | chr1_2:72931951-72931970 | Msa0090830:intron | 45.0% | |
TACGCACATGTTTGTCTTGG+TGG | - | chr1_2:72931954-72931973 | Msa0090830:intron | 45.0% | |
AAATGTCCACAAACTTGCGG+TGG | - | chr1_2:72932041-72932060 | Msa0090830:intron | 45.0% | |
AATGTCCACAAACTTGCGGT+GGG | - | chr1_2:72932042-72932061 | Msa0090830:intron | 45.0% | |
! | ACACGTTTGGATGTGCGTTT+TGG | + | chr1_2:72932073-72932092 | None:intergenic | 45.0% |
GGAAGGTGATGAAGAATCCA+TGG | - | chr1_2:72932597-72932616 | Msa0090830:intron | 45.0% | |
AAGCGATCATGCAAGTTCAC+AGG | + | chr1_2:72932698-72932717 | None:intergenic | 45.0% | |
!! | AAAGAAGTGATGGGCGAAGA+TGG | + | chr1_2:72933456-72933475 | None:intergenic | 45.0% |
! | GGCACCTTTTGAACCATAAC+AGG | - | chr1_2:72933755-72933774 | Msa0090830:intron | 45.0% |
TTGGCATCTTACCCCCAATT+AGG | - | chr1_2:72933794-72933813 | Msa0090830:intron | 45.0% | |
! | CTGATCCTTCTGGCACATTT+TGG | - | chr1_2:72934062-72934081 | Msa0090830:intron | 45.0% |
CATTGCCAAAATGTGCCAGA+AGG | + | chr1_2:72934070-72934089 | None:intergenic | 45.0% | |
!! | GCTATTGGTTCAGGATCAGA+AGG | - | chr1_2:72934100-72934119 | Msa0090830:intron | 45.0% |
! | CATTTTCTCCACAGTTGGAG+AGG | + | chr1_2:72934286-72934305 | None:intergenic | 45.0% |
CTCTCCAACTGTGGAGAAAA+TGG | - | chr1_2:72934284-72934303 | Msa0090830:intron | 45.0% | |
CCACTTAGTGAGATAAGGCT+TGG | + | chr1_2:72934416-72934435 | None:intergenic | 45.0% | |
! | CCAAGCCTTATCTCACTAAG+TGG | - | chr1_2:72934413-72934432 | Msa0090830:CDS | 45.0% |
CGACTCCACTTAGTGAGATA+AGG | + | chr1_2:72934421-72934440 | None:intergenic | 45.0% | |
AGGAGAGTAGATCAGATGGA+GGG | + | chr1_2:72934580-72934599 | None:intergenic | 45.0% | |
AAGGAGAGTAGATCAGATGG+AGG | + | chr1_2:72934581-72934600 | None:intergenic | 45.0% | |
GCATGTAGAGAGAAGACCTA+TGG | + | chr1_2:72934614-72934633 | None:intergenic | 45.0% | |
CGCAGAAAGGATCTTAAGAG+GGG | + | chr1_2:72934725-72934744 | None:intergenic | 45.0% | |
GACGCAGAAAGGATCTTAAG+AGG | + | chr1_2:72934727-72934746 | None:intergenic | 45.0% | |
TTCTCCATTCTCTCCTCGAA+TGG | - | chr1_2:72934935-72934954 | Msa0090830:intron | 45.0% | |
GGCGAAACCCCAAAGAATTA+AGG | + | chr1_2:72935094-72935113 | None:intergenic | 45.0% | |
CTGGCAATGTCAACGTTGTT+GGG | + | chr1_2:72935519-72935538 | None:intergenic | 45.0% | |
CAACAACGTTGACATTGCCA+GGG | - | chr1_2:72935518-72935537 | Msa0090830:intron | 45.0% | |
GGGGTATAAAGATGATACGC+TGG | + | chr1_2:72935549-72935568 | None:intergenic | 45.0% | |
TCATCTTTATACCCCGTCTG+AGG | - | chr1_2:72935554-72935573 | Msa0090830:CDS | 45.0% | |
!! | AAAAAAAAAATTACATAAAA+GGG | + | chr1_2:72931399-72931418 | None:intergenic | 5.0% |
!!! | AATTTTTTTTTTGTTAATTT+AGG | - | chr1_2:72931407-72931426 | Msa0090830:intron | 5.0% |
!!! | ATTTTTTTTTTGTTAATTTA+GGG | - | chr1_2:72931408-72931427 | Msa0090830:intron | 5.0% |
CAAACCAAAAACCCAGCGAG+AGG | - | chr1_2:72930817-72930836 | Msa0090830:three_prime_UTR | 50.0% | |
! | AAGACCTCTCGCTGGGTTTT+TGG | + | chr1_2:72930824-72930843 | None:intergenic | 50.0% |
! | AACCCAGCGAGAGGTCTTTT+AGG | - | chr1_2:72930826-72930845 | Msa0090830:three_prime_UTR | 50.0% |
! | CATAAAAATGGCGGAGCGGA+GGG | + | chr1_2:72930905-72930924 | None:intergenic | 50.0% |
! | GCTGCATAAAAATGGCGGAG+CGG | + | chr1_2:72930909-72930928 | None:intergenic | 50.0% |
TCCCGAAGGACGTTTGTTTC+AGG | - | chr1_2:72931163-72931182 | Msa0090830:CDS | 50.0% | |
CAGCTTGGATCAACTGCGAT+TGG | - | chr1_2:72931299-72931318 | Msa0090830:intron | 50.0% | |
GCGTATTACTTCGCCTCTAC+TGG | - | chr1_2:72931361-72931380 | Msa0090830:CDS | 50.0% | |
AAAATAGCGCCGCTATGGTG+AGG | - | chr1_2:72931781-72931800 | Msa0090830:intron | 50.0% | |
TCAGTTTAGCAGTGCGGAGT+GGG | - | chr1_2:72931831-72931850 | Msa0090830:intron | 50.0% | |
CAACCCCAAAAGTGGGATAG+AGG | + | chr1_2:72931905-72931924 | None:intergenic | 50.0% | |
GTCAATCCTGCATTGTGGTG+CGG | + | chr1_2:72931934-72931953 | None:intergenic | 50.0% | |
GCGTAGTCAATCCTGCATTG+TGG | + | chr1_2:72931939-72931958 | None:intergenic | 50.0% | |
GCACATGTTTGTCTTGGTGG+TGG | - | chr1_2:72931957-72931976 | Msa0090830:intron | 50.0% | |
ATGTCCACAAACTTGCGGTG+GGG | - | chr1_2:72932043-72932062 | Msa0090830:intron | 50.0% | |
! | CACATTGGCTGTGCAATGAG+TGG | - | chr1_2:72932284-72932303 | Msa0090830:intron | 50.0% |
! | GCATGCACGAGTTGAAACTC+AGG | - | chr1_2:72932337-72932356 | Msa0090830:intron | 50.0% |
CTTTGGCAGTCTCGACCATT+TGG | - | chr1_2:72933035-72933054 | Msa0090830:intron | 50.0% | |
! | GGAGTGTCTCTCCTTATTGC+TGG | - | chr1_2:72933056-72933075 | Msa0090830:intron | 50.0% |
TCTCGTCATGGCCAGCAATA+AGG | + | chr1_2:72933070-72933089 | None:intergenic | 50.0% | |
ATTGCTGGCCATGACGAGAA+TGG | - | chr1_2:72933071-72933090 | Msa0090830:intron | 50.0% | |
!! | CTGGACTATTGGTCTTGCTG+AGG | - | chr1_2:72934011-72934030 | Msa0090830:intron | 50.0% |
GGAGAGTAGATCAGATGGAG+GGG | + | chr1_2:72934579-72934598 | None:intergenic | 50.0% | |
TATAGATGACGAACCCTCGC+TGG | - | chr1_2:72934696-72934715 | Msa0090830:intron | 50.0% | |
CTCTCCATTCGAGGAGAGAA+TGG | + | chr1_2:72934942-72934961 | None:intergenic | 50.0% | |
CATTCTCTCCTCGAATGGAG+AGG | - | chr1_2:72934940-72934959 | Msa0090830:intron | 50.0% | |
AGGATGCAGACCCCATAATG+AGG | - | chr1_2:72934960-72934979 | Msa0090830:intron | 50.0% | |
TCAGTAGGGGGACAAACAAC+TGG | + | chr1_2:72935450-72935469 | None:intergenic | 50.0% | |
CCTGGCAATGTCAACGTTGT+TGG | + | chr1_2:72935520-72935539 | None:intergenic | 50.0% | |
CCAACAACGTTGACATTGCC+AGG | - | chr1_2:72935517-72935536 | Msa0090830:intron | 50.0% | |
TCTTTATACCCCGTCTGAGG+TGG | - | chr1_2:72935557-72935576 | Msa0090830:CDS | 50.0% | |
ATCACAGCTTCCACCTCAGA+CGG | + | chr1_2:72935570-72935589 | None:intergenic | 50.0% | |
GAGCGGAGGGTTGAGAAATC+GGG | + | chr1_2:72930892-72930911 | None:intergenic | 55.0% | |
GGAGCGGAGGGTTGAGAAAT+CGG | + | chr1_2:72930893-72930912 | None:intergenic | 55.0% | |
! | GCATAAAAATGGCGGAGCGG+AGG | + | chr1_2:72930906-72930925 | None:intergenic | 55.0% |
GTCACATACCAGTTGCGCCA+AGG | + | chr1_2:72931455-72931474 | None:intergenic | 55.0% | |
AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_2:72931478-72931497 | Msa0090830:intron | 55.0% | |
AGCGCAAAATAGCGCCGCTA+TGG | - | chr1_2:72931776-72931795 | Msa0090830:intron | 55.0% | |
GTCAGTTTAGCAGTGCGGAG+TGG | - | chr1_2:72931830-72931849 | Msa0090830:intron | 55.0% | |
CAGTTTAGCAGTGCGGAGTG+GGG | - | chr1_2:72931832-72931851 | Msa0090830:intron | 55.0% | |
AGTTTAGCAGTGCGGAGTGG+GGG | - | chr1_2:72931833-72931852 | Msa0090830:intron | 55.0% | |
GAGCGGTCAACCCCAAAAGT+GGG | + | chr1_2:72931912-72931931 | None:intergenic | 55.0% | |
TGTCCACAAACTTGCGGTGG+GGG | - | chr1_2:72932044-72932063 | Msa0090830:intron | 55.0% | |
!! | TGTGACCTAGCCTTGCGCTT+TGG | - | chr1_2:72932574-72932593 | Msa0090830:intron | 55.0% |
!! | GTGACCTAGCCTTGCGCTTT+GGG | - | chr1_2:72932575-72932594 | Msa0090830:intron | 55.0% |
!! | TGACCTAGCCTTGCGCTTTG+GGG | - | chr1_2:72932576-72932595 | Msa0090830:intron | 55.0% |
ATCACCTTCCCCAAAGCGCA+AGG | + | chr1_2:72932587-72932606 | None:intergenic | 55.0% | |
GGCTAGGTCCATTCTCGTCA+TGG | + | chr1_2:72933082-72933101 | None:intergenic | 55.0% | |
TTAAGAGGGGTGACCAGCGA+GGG | + | chr1_2:72934712-72934731 | None:intergenic | 55.0% | |
GTCTGCATCCTCTCCATTCG+AGG | + | chr1_2:72934951-72934970 | None:intergenic | 55.0% | |
ATGATACGCTGGAGCAACCC+TGG | + | chr1_2:72935538-72935557 | None:intergenic | 55.0% | |
TCACAGCTTCCACCTCAGAC+GGG | + | chr1_2:72935569-72935588 | None:intergenic | 55.0% | |
AGGGGTAACCTTGGCGCAAC+TGG | - | chr1_2:72931444-72931463 | Msa0090830:intron | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_2:72931547-72931566 | Msa0090830:intron | 60.0% |
CTGAAGCTCCCGCATACGCA+GGG | + | chr1_2:72931574-72931593 | None:intergenic | 60.0% | |
ACTGAAGCTCCCGCATACGC+AGG | + | chr1_2:72931575-72931594 | None:intergenic | 60.0% | |
ATGCGGGAGCTTCAGTGCAC+CGG | - | chr1_2:72931579-72931598 | Msa0090830:intron | 60.0% | |
GGAGCGGTCAACCCCAAAAG+TGG | + | chr1_2:72931913-72931932 | None:intergenic | 60.0% | |
TCCTGCATTGTGGTGCGGAG+CGG | + | chr1_2:72931929-72931948 | None:intergenic | 60.0% | |
TCACCCCCACCGCAAGTTTG+TGG | + | chr1_2:72932050-72932069 | None:intergenic | 60.0% | |
CACTGCTGGGCTCCTGAAAG+TGG | + | chr1_2:72932238-72932257 | None:intergenic | 60.0% | |
CTTTCAGGAGCCCAGCAGTG+TGG | - | chr1_2:72932238-72932257 | Msa0090830:intron | 60.0% | |
CTTCCCCAAAGCGCAAGGCT+AGG | + | chr1_2:72932582-72932601 | None:intergenic | 60.0% | |
!! | CTAGCCTTGCGCTTTGGGGA+AGG | - | chr1_2:72932580-72932599 | Msa0090830:intron | 60.0% |
GTCCAGCTCCTCTCCAACTG+TGG | - | chr1_2:72934275-72934294 | Msa0090830:intron | 60.0% | |
CTCCACAGTTGGAGAGGAGC+TGG | + | chr1_2:72934280-72934299 | None:intergenic | 60.0% | |
CTTAAGAGGGGTGACCAGCG+AGG | + | chr1_2:72934713-72934732 | None:intergenic | 60.0% | |
CACAGCTTCCACCTCAGACG+GGG | + | chr1_2:72935568-72935587 | None:intergenic | 60.0% | |
CGGGAAGGGGTCCCACCATT+TGG | + | chr1_2:72931549-72931568 | None:intergenic | 65.0% | |
CATACGCAGGGTCCGGGAAG+GGG | + | chr1_2:72931562-72931581 | None:intergenic | 65.0% | |
GCATACGCAGGGTCCGGGAA+GGG | + | chr1_2:72931563-72931582 | None:intergenic | 65.0% | |
CTTCCCGGACCCTGCGTATG+CGG | - | chr1_2:72931562-72931581 | Msa0090830:intron | 65.0% | |
TTCCCGGACCCTGCGTATGC+GGG | - | chr1_2:72931563-72931582 | Msa0090830:intron | 65.0% | |
TGCGGGAGCTTCAGTGCACC+GGG | - | chr1_2:72931580-72931599 | Msa0090830:intron | 65.0% | |
ACCGCTCCGCACCACAATGC+AGG | - | chr1_2:72931925-72931944 | Msa0090830:intron | 65.0% | |
CGCATACGCAGGGTCCGGGA+AGG | + | chr1_2:72931564-72931583 | None:intergenic | 70.0% | |
CTCCCGCATACGCAGGGTCC+GGG | + | chr1_2:72931568-72931587 | None:intergenic | 70.0% | |
GCTCCCGCATACGCAGGGTC+CGG | + | chr1_2:72931569-72931588 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 72930767 | 72935995 | 72930767 | ID=Msa0090830;Name=Msa0090830 |
chr1_2 | mRNA | 72930767 | 72935995 | 72930767 | ID=Msa0090830-mRNA-1;Parent=Msa0090830;Name=Msa0090830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=187|1|1|1|0.88|0.8|10|393|237 |
chr1_2 | exon | 72930767 | 72931252 | 72930767 | ID=Msa0090830-mRNA-1:exon:25396;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72931345 | 72931410 | 72931345 | ID=Msa0090830-mRNA-1:exon:25395;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72932606 | 72932708 | 72932606 | ID=Msa0090830-mRNA-1:exon:25394;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72933660 | 72933718 | 72933660 | ID=Msa0090830-mRNA-1:exon:25393;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72934144 | 72934245 | 72934144 | ID=Msa0090830-mRNA-1:exon:25392;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72934404 | 72934517 | 72934404 | ID=Msa0090830-mRNA-1:exon:25391;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72935380 | 72935460 | 72935380 | ID=Msa0090830-mRNA-1:exon:25390;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72935551 | 72935632 | 72935551 | ID=Msa0090830-mRNA-1:exon:25389;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72935774 | 72935958 | 72935774 | ID=Msa0090830-mRNA-1:exon:25388;Parent=Msa0090830-mRNA-1 |
chr1_2 | exon | 72935980 | 72935995 | 72935980 | ID=Msa0090830-mRNA-1:exon:25387;Parent=Msa0090830-mRNA-1 |
chr1_2 | five_prime_UTR | 72935980 | 72935995 | 72935980 | ID=Msa0090830-mRNA-1:five_prime_utr;Parent=Msa0090830-mRNA-1 |
chr1_2 | five_prime_UTR | 72935788 | 72935958 | 72935788 | ID=Msa0090830-mRNA-1:five_prime_utr;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72935774 | 72935787 | 72935774 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72935551 | 72935632 | 72935551 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72935380 | 72935460 | 72935380 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72934404 | 72934517 | 72934404 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72934144 | 72934245 | 72934144 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72933660 | 72933718 | 72933660 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72932606 | 72932708 | 72932606 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72931345 | 72931410 | 72931345 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | CDS | 72931160 | 72931252 | 72931160 | ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1 |
chr1_2 | three_prime_UTR | 72930767 | 72931159 | 72930767 | ID=Msa0090830-mRNA-1:three_prime_utr;Parent=Msa0090830-mRNA-1 |
Gene Sequence |
Protein sequence |