AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090830 MtrunA17_Chr1g0210811 99.578 237 1 0 1 237 1 237 1.81e-178 489
Msa0090830 MtrunA17_Chr6g0453891 62.150 214 64 5 31 237 133 336 6.24e-75 230
Msa0090830 MtrunA17_Chr7g0243311 45.161 217 107 5 8 218 5 215 3.16e-58 184
Msa0090830 MtrunA17_Chr5g0401801 44.550 211 109 4 8 213 5 212 8.88e-55 175
Msa0090830 MtrunA17_Chr2g0283841 39.914 233 130 5 6 234 2 228 6.22e-50 163
Msa0090830 MtrunA17_Chr8g0371571 41.150 226 125 4 8 231 4 223 6.29e-50 163
Msa0090830 MtrunA17_Chr0c02g0489661 35.526 228 142 2 6 231 4 228 1.40e-47 157
Msa0090830 MtrunA17_Chr1g0155371 46.154 182 93 2 3 184 1 177 3.22e-47 157
Msa0090830 MtrunA17_Chr8g0360781 34.199 231 142 5 8 231 9 236 1.28e-40 139
Msa0090830 MtrunA17_Chr2g0308541 32.900 231 145 5 8 231 9 236 7.96e-39 135
Msa0090830 MtrunA17_Chr6g0459741 34.783 207 120 2 6 206 6 203 2.38e-38 134
Msa0090830 MtrunA17_Chr4g0004521 37.143 175 91 4 22 185 7 173 3.86e-26 102
Msa0090830 MtrunA17_Chr4g0027841 34.239 184 97 7 11 184 91 260 5.42e-18 81.3
Msa0090830 MtrunA17_Chr3g0116161 28.313 166 107 3 34 196 54 210 1.40e-14 71.2
Msa0090830 MtrunA17_Chr5g0394931 30.464 151 94 3 45 192 13 155 1.20e-12 64.7
Msa0090830 MtrunA17_Chr5g0399161 28.249 177 114 4 42 213 10 178 1.35e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090830 AT3G14290.1 97.046 237 7 0 1 237 1 237 3.85e-175 481
Msa0090830 AT1G53850.1 96.624 237 8 0 1 237 1 237 1.07e-174 479
Msa0090830 AT1G53850.2 96.624 237 8 0 1 237 1 237 1.07e-174 479
Msa0090830 AT3G22110.1 41.494 241 123 7 8 236 5 239 1.65e-56 181
Msa0090830 AT1G16470.1 35.088 228 143 2 6 231 4 228 1.83e-47 157
Msa0090830 AT1G16470.2 35.088 228 143 2 6 231 4 228 1.83e-47 157
Msa0090830 AT1G79210.1 34.188 234 149 2 6 237 4 234 1.84e-47 157
Msa0090830 AT1G79210.2 34.188 234 149 2 6 237 4 234 1.84e-47 157
Msa0090830 AT1G79210.3 34.188 234 149 2 6 237 4 234 1.84e-47 157
Msa0090830 AT5G66140.1 42.500 200 109 3 8 205 4 199 2.81e-47 157
Msa0090830 AT3G51260.2 41.791 201 111 3 7 205 3 199 8.53e-47 155
Msa0090830 AT3G51260.1 42.000 200 110 3 8 205 4 199 1.34e-46 155
Msa0090830 AT5G42790.1 39.506 243 125 4 3 234 1 232 1.55e-46 156
Msa0090830 AT1G47250.1 38.683 243 127 4 3 234 1 232 3.07e-46 155
Msa0090830 AT5G35590.1 35.498 231 139 5 8 231 9 236 3.14e-41 141
Msa0090830 AT2G27020.1 33.816 207 122 2 6 206 6 203 1.88e-38 134
Msa0090830 AT2G05840.2 34.434 212 132 4 8 215 9 217 2.61e-37 130
Msa0090830 AT2G05840.1 34.419 215 134 4 8 218 9 220 3.03e-37 131
Msa0090830 AT2G27020.2 33.816 207 122 2 6 206 108 305 3.09e-37 134
Msa0090830 AT4G15165.1 31.535 241 105 6 8 236 5 197 5.50e-35 124
Msa0090830 AT2G05840.3 35.263 190 118 3 8 195 9 195 5.97e-35 124
Msa0090830 AT3G26340.1 26.500 200 132 5 27 220 48 238 1.25e-14 71.6
Msa0090830 AT1G13060.1 25.654 191 129 4 34 220 57 238 1.67e-13 68.6
Msa0090830 AT4G14800.1 28.571 175 113 4 45 215 13 179 4.74e-12 63.5
Msa0090830 AT5G40580.1 25.616 203 141 3 31 231 36 230 4.84e-12 64.3
Msa0090830 AT5G40580.2 25.616 203 141 3 31 231 36 230 4.84e-12 64.3
Msa0090830 AT3G27430.2 26.108 203 140 3 31 231 36 230 9.30e-12 63.5
Msa0090830 AT3G27430.1 26.842 190 129 3 31 218 36 217 1.15e-11 63.2
Msa0090830 AT4G14800.2 28.495 186 121 4 45 218 13 198 1.26e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTTCTGGCACATTT+TGG 0.189061 1_2:-72932678 Msa0090830:CDS
TCCCGAAGGACGTTTGTTTC+AGG 0.228080 1_2:-72935577 Msa0090830:CDS
GTGACCTAGCCTTGCGCTTT+GGG 0.251856 1_2:-72934165 Msa0090830:CDS
ATATGCAATTGAAGCTATTA+AGG 0.287746 1_2:-72935550 Msa0090830:intron
CTTTGGCAGTCTCGACCATT+TGG 0.312188 1_2:-72933705 Msa0090830:intron
GGAGCGGAGGGTTGAGAAAT+CGG 0.323198 1_2:+72935850 Msa0090840:CDS
AGACTGAATATCAGAAAATA+TGG 0.331191 1_2:+72931030 None:intergenic
GGAGTGTCTCTCCTTATTGC+TGG 0.335194 1_2:-72933684 Msa0090830:CDS
TGTGACCTAGCCTTGCGCTT+TGG 0.345737 1_2:-72934166 Msa0090830:CDS
CAGAATCACAGGTTCTCTTA+TGG 0.347192 1_2:-72934226 Msa0090830:CDS
CAATGCAATGCAAAGGCTAT+TGG 0.347609 1_2:-72932655 Msa0090830:CDS
TCTCGTCATGGCCAGCAATA+AGG 0.348529 1_2:+72933673 None:intergenic
TAAAATAGTATCGCAGCGTT+TGG 0.351558 1_2:-72930991 Msa0090830:three_prime_UTR
AATCAAATCACGCAAATAGA+TGG 0.363237 1_2:+72931134 None:intergenic
CAGCAGTGTGGAGAAAATTA+TGG 0.366170 1_2:-72934490 Msa0090830:CDS
ATCAATTCTGAAGCAAGTTA+TGG 0.388035 1_2:-72931353 Msa0090830:CDS
TTGATTTGATTTGATTTGAA+TGG 0.392394 1_2:+72935799 None:intergenic
AACCTGAAACAAACGTCCTT+CGG 0.394934 1_2:+72935575 None:intergenic
CCAACAACGTTGACATTGCC+AGG 0.408754 1_2:-72931223 Msa0090830:CDS
ACCTGAAACAAACGTCCTTC+GGG 0.423347 1_2:+72935576 None:intergenic
GAAGAGAAAGAGTGTGAGAT+GGG 0.423463 1_2:+72935880 Msa0090840:CDS
CCTGGCAATGTCAACGTTGT+TGG 0.426746 1_2:+72931223 None:intergenic
AAAATAGTATCGCAGCGTTT+GGG 0.438945 1_2:-72930990 Msa0090830:three_prime_UTR
CAGCTTGGATCAACTGCGAT+TGG 0.442542 1_2:-72935441 Msa0090830:CDS
CTGGCAATGTCAACGTTGTT+GGG 0.454160 1_2:+72931224 None:intergenic
GCGTATTACTTCGCCTCTAC+TGG 0.457074 1_2:-72935379 Msa0090830:intron
AGATATTACACTGATCCTTC+TGG 0.466365 1_2:-72932688 Msa0090830:CDS
CGCAAATAGATGGAAATCAT+AGG 0.479822 1_2:+72931144 None:intergenic
GAGCGGAGGGTTGAGAAATC+GGG 0.481377 1_2:+72935851 Msa0090840:CDS
AGAAGAGAAAGAGTGTGAGA+TGG 0.487758 1_2:+72935879 Msa0090840:CDS
AATGCAAAGGCTATTGGTTC+AGG 0.500036 1_2:-72932649 Msa0090830:CDS
TTTGATTTGATTTGAATGGA+TGG 0.504082 1_2:+72935803 None:intergenic
CTAGCCTTGCGCTTTGGGGA+AGG 0.509941 1_2:-72934160 Msa0090830:CDS
ATTGCTGGCCATGACGAGAA+TGG 0.514622 1_2:-72933669 Msa0090830:CDS
TATATTATCGAGTGTGGAGA+TGG 0.521151 1_2:-72930880 Msa0090830:three_prime_UTR
GGAATATATACTTACAGGCT+AGG 0.527284 1_2:+72933645 None:intergenic
ATCACAGCTTCCACCTCAGA+CGG 0.535599 1_2:+72931173 None:intergenic
TCACAGCTTCCACCTCAGAC+GGG 0.536535 1_2:+72931174 None:intergenic
TCTTTATACCCCGTCTGAGG+TGG 0.544181 1_2:-72931183 Msa0090830:CDS
CTTGAAAACGAAAGAGGGTG+TGG 0.545014 1_2:-72935418 Msa0090830:CDS
ATGATACGCTGGAGCAACCC+TGG 0.548475 1_2:+72931205 None:intergenic
TGAATATCAGAAAATATGGT+AGG 0.556483 1_2:+72931034 None:intergenic
CTTCCCCAAAGCGCAAGGCT+AGG 0.558153 1_2:+72934161 None:intergenic
TACCTAAAAGACCTCTCGCT+GGG 0.559939 1_2:+72935912 Msa0090840:CDS
ATCTAGTATTGCATACAACT+TGG 0.561296 1_2:+72931060 None:intergenic
TTACCTAAAAGACCTCTCGC+TGG 0.564004 1_2:+72935911 Msa0090840:CDS
TAACCTTGTGAGAAACATGT+TGG 0.566164 1_2:+72935770 None:intergenic
GAAGCAAGTTATGGAAGAGA+AGG 0.568369 1_2:-72931344 Msa0090830:intron
GGCTAGGTCCATTCTCGTCA+TGG 0.580425 1_2:+72933661 None:intergenic
ATAAGGAGAGACACTCCAAA+TGG 0.589626 1_2:+72933690 None:intergenic
TGACCTAGCCTTGCGCTTTG+GGG 0.590485 1_2:-72934164 Msa0090830:CDS
ATCACCTTCCCCAAAGCGCA+AGG 0.591699 1_2:+72934156 None:intergenic
GCTATTGGTTCAGGATCAGA+AGG 0.597231 1_2:-72932640 Msa0090830:CDS
GGAAGGTGATGAAGAATCCA+TGG 0.599188 1_2:-72934143 Msa0090830:intron
CTAGTATATATTATCGAGTG+TGG 0.602194 1_2:-72930886 Msa0090830:three_prime_UTR
GTTGTAGACTCTACAGTCAT+CGG 0.602200 1_2:+72934199 None:intergenic
CACATTGGCTGTGCAATGAG+TGG 0.606594 1_2:-72934456 Msa0090830:CDS
GATTGGCTTGAAAACGAAAG+AGG 0.610207 1_2:-72935424 Msa0090830:CDS
CATTGCCAAAATGTGCCAGA+AGG 0.618837 1_2:+72932673 None:intergenic
AAACCAACATGTTTCTCACA+AGG 0.620638 1_2:-72935773 Msa0090830:intron
ATGGAAATTGATGATCACAT+TGG 0.621320 1_2:-72934471 Msa0090830:CDS
GAATAGGTACATACCAGTAG+AGG 0.625077 1_2:+72935366 None:intergenic
ATTGGCTTGAAAACGAAAGA+GGG 0.626167 1_2:-72935423 Msa0090830:CDS
TCATCTTTATACCCCGTCTG+AGG 0.634475 1_2:-72931186 Msa0090830:CDS
CAACAACGTTGACATTGCCA+GGG 0.635659 1_2:-72931222 Msa0090830:CDS
CACAGCTTCCACCTCAGACG+GGG 0.645540 1_2:+72931175 None:intergenic
GGGGTATAAAGATGATACGC+TGG 0.658506 1_2:+72931194 None:intergenic
GCATGCACGAGTTGAAACTC+AGG 0.662565 1_2:-72934403 Msa0090830:intron
CTTTCAGGAGCCCAGCAGTG+TGG 0.675944 1_2:-72934502 Msa0090830:intron
ATTAGAACTGAGTATGACCG+TGG 0.689159 1_2:-72935615 Msa0090830:intron
TCTGCAAGAACAATTCAACA+AGG 0.713271 1_2:-72932605 Msa0090830:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTAATTTTTTTTTTGT+TGG - chr1_2:72931272-72931291 Msa0090830:intron 10.0%
!! CAAAAAAAAAATTACATAAA+AGG + chr1_2:72931400-72931419 None:intergenic 10.0%
!!! TTTAGAATAAATTGAATTAT+GGG - chr1_2:72931718-72931737 Msa0090830:intron 10.0%
!!! TTTATAATTTAAAATGTTGT+TGG - chr1_2:72935218-72935237 Msa0090830:intron 10.0%
!! AATTCAATCATAAAAAAATT+AGG - chr1_2:72935911-72935930 Msa0090830:five_prime_UTR 10.0%
!! ATTCAATCATAAAAAAATTA+GGG - chr1_2:72935912-72935931 Msa0090830:five_prime_UTR 10.0%
!!! GTTTAGAATAAATTGAATTA+TGG - chr1_2:72931717-72931736 Msa0090830:intron 15.0%
!! TTAGAATAAATTGAATTATG+GGG - chr1_2:72931719-72931738 Msa0090830:intron 15.0%
!!! ATATTGATATTGATCTATTT+TGG - chr1_2:72932480-72932499 Msa0090830:intron 15.0%
!!! TTTTTTTATTAGTGTACAAA+TGG - chr1_2:72932903-72932922 Msa0090830:intron 15.0%
!!! TTTTTTATTAGTGTACAAAT+GGG - chr1_2:72932904-72932923 Msa0090830:intron 15.0%
!!! CTTTCTTATTATTTCTTTAA+TGG - chr1_2:72933555-72933574 Msa0090830:intron 15.0%
!! ATATCATTAAAATTATTAGC+TGG - chr1_2:72934211-72934230 Msa0090830:CDS 15.0%
!! TATCATTAAAATTATTAGCT+GGG - chr1_2:72934212-72934231 Msa0090830:CDS 15.0%
!! TATTAATTACCTTAATTCTT+TGG - chr1_2:72935082-72935101 Msa0090830:intron 15.0%
!! ATTAATTACCTTAATTCTTT+GGG - chr1_2:72935083-72935102 Msa0090830:intron 15.0%
!! AGTAAAAATATATAATAGCA+CGG + chr1_2:72935819-72935838 None:intergenic 15.0%
!!! TTGATTTGATTTGATTTGAA+TGG + chr1_2:72930944-72930963 None:intergenic 20.0%
!! ACAAAAATCCTAATACATTT+GGG + chr1_2:72931071-72931090 None:intergenic 20.0%
!! AACAAAAATCCTAATACATT+TGG + chr1_2:72931072-72931091 None:intergenic 20.0%
!! ACCCTAATAATAATAATAGA+GGG + chr1_2:72931223-72931242 None:intergenic 20.0%
!! AACCCTAATAATAATAATAG+AGG + chr1_2:72931224-72931243 None:intergenic 20.0%
!! AAAATTACATAAAAGGGAAT+AGG + chr1_2:72931393-72931412 None:intergenic 20.0%
!! AATAAATATGACTATAAGCA+CGG + chr1_2:72932161-72932180 None:intergenic 20.0%
!! AAATTGTAATGTATGTTTCA+TGG + chr1_2:72932203-72932222 None:intergenic 20.0%
!!! TGATTGATATTGATCTATTT+TGG - chr1_2:72932409-72932428 Msa0090830:intron 20.0%
!!! CAACAATAGATTTTAAGTTT+AGG + chr1_2:72932832-72932851 None:intergenic 20.0%
!! CTAAACTTAAAATCTATTGT+TGG - chr1_2:72932830-72932849 Msa0090830:intron 20.0%
!! ATATTAAACATTCCTATGAA+AGG - chr1_2:72932853-72932872 Msa0090830:intron 20.0%
!! ATAAAAAAACACCTTACAAA+AGG + chr1_2:72932892-72932911 None:intergenic 20.0%
!!! TACCATTTATTTTTTCTCTT+TGG - chr1_2:72933018-72933037 Msa0090830:intron 20.0%
!! ATTAGTTAAATTACAGAGAA+AGG - chr1_2:72933259-72933278 Msa0090830:intron 20.0%
!! ATGTTAAAACATTTCTAAAC+CGG - chr1_2:72933358-72933377 Msa0090830:intron 20.0%
!! AACAAAAATGAGAAAATTAC+AGG + chr1_2:72933407-72933426 None:intergenic 20.0%
!! ATAAAAAAGAAAGAAGTGAT+GGG + chr1_2:72933465-72933484 None:intergenic 20.0%
!! AATAAAAAAGAAAGAAGTGA+TGG + chr1_2:72933466-72933485 None:intergenic 20.0%
!!! ATTTATTTCCTTTTTCATTC+TGG - chr1_2:72933992-72934011 Msa0090830:intron 20.0%
!! TGTTAAATAGATACACAAAA+TGG - chr1_2:72934910-72934929 Msa0090830:intron 20.0%
!! TTAATTACCTTAATTCTTTG+GGG - chr1_2:72935084-72935103 Msa0090830:intron 20.0%
!! AAGAGTTGAATATGATTTAT+AGG + chr1_2:72935115-72935134 None:intergenic 20.0%
!!! AGAATATCAATATGATTTGT+AGG + chr1_2:72935139-72935158 None:intergenic 20.0%
!! TCATAAAAAAATTAGGGTAA+AGG - chr1_2:72935918-72935937 Msa0090830:five_prime_UTR 20.0%
!! CATAAAAAAATTAGGGTAAA+GGG - chr1_2:72935919-72935938 Msa0090830:five_prime_UTR 20.0%
!!! TTTGATTTGATTTGAATGGA+TGG + chr1_2:72930940-72930959 None:intergenic 25.0%
!! TAATTTTCCCCAAATGTATT+AGG - chr1_2:72931060-72931079 Msa0090830:three_prime_UTR 25.0%
! CAAAAATCCTAATACATTTG+GGG + chr1_2:72931070-72931089 None:intergenic 25.0%
!!! GTATTAGGATTTTTGTTTCT+AGG - chr1_2:72931075-72931094 Msa0090830:three_prime_UTR 25.0%
! ATATGCAATTGAAGCTATTA+AGG - chr1_2:72931190-72931209 Msa0090830:CDS 25.0%
! TGCCCTCTATTATTATTATT+AGG - chr1_2:72931218-72931237 Msa0090830:CDS 25.0%
! GCCCTCTATTATTATTATTA+GGG - chr1_2:72931219-72931238 Msa0090830:CDS 25.0%
!!! GGTTTTTAACTATCTGTATT+CGG - chr1_2:72931240-72931259 Msa0090830:intron 25.0%
!!! GTTTTTAACTATCTGTATTC+GGG - chr1_2:72931241-72931260 Msa0090830:intron 25.0%
! CACACATATATTTCTTACTT+GGG + chr1_2:72931666-72931685 None:intergenic 25.0%
!! TCAGAATTACATCTAAAACT+GGG + chr1_2:72932100-72932119 None:intergenic 25.0%
!! TTCAGAATTACATCTAAAAC+TGG + chr1_2:72932101-72932120 None:intergenic 25.0%
! AATAGAATGTTGTATGTAGT+TGG - chr1_2:72932377-72932396 Msa0090830:intron 25.0%
! TATAGAATGTTGTATGTAGT+TGG - chr1_2:72932437-72932456 Msa0090830:intron 25.0%
!!! TTTATTTTTCACAGAATCAC+AGG - chr1_2:72932503-72932522 Msa0090830:intron 25.0%
! TGCATATTCTGAATGTTTAA+TGG - chr1_2:72932759-72932778 Msa0090830:intron 25.0%
! TTGTAAAAGATACTTACTAG+TGG - chr1_2:72932959-72932978 Msa0090830:intron 25.0%
! TGCCAAAGAGAAAAAATAAA+TGG + chr1_2:72933023-72933042 None:intergenic 25.0%
! TAGATGGAATATATACTTAC+AGG + chr1_2:72933103-72933122 None:intergenic 25.0%
!! AAAAGAAAGTGTAACATACA+AGG + chr1_2:72933233-72933252 None:intergenic 25.0%
!! TATGTTACACTTTCTTTTCT+GGG - chr1_2:72933235-72933254 Msa0090830:intron 25.0%
! AAATTCTTGTCAAATATGTC+CGG + chr1_2:72933380-72933399 None:intergenic 25.0%
!!! TTTCTCATTTTTGTTTCACT+TGG - chr1_2:72933412-72933431 Msa0090830:intron 25.0%
!!! TTCACAAATACTTTTGAGAA+AGG + chr1_2:72933496-72933515 None:intergenic 25.0%
! GAAATAATAAGAAAGAGTGA+AGG + chr1_2:72933550-72933569 None:intergenic 25.0%
!!! TATTTTGATTTTGTAGGATC+AGG - chr1_2:72933915-72933934 Msa0090830:intron 25.0%
! ATTAAAATTATTAGCTGGGA+TGG - chr1_2:72934216-72934235 Msa0090830:CDS 25.0%
!! TGTTATTTGCAACAGTATTA+AGG + chr1_2:72935057-72935076 None:intergenic 25.0%
! AGACAAAAATATACAAGAGA+TGG + chr1_2:72935173-72935192 None:intergenic 25.0%
!!! ATCTCTTGTATATTTTTGTC+TGG - chr1_2:72935172-72935191 Msa0090830:intron 25.0%
! TTGCTTAAAGATTATCTTTC+AGG - chr1_2:72935267-72935286 Msa0090830:intron 25.0%
!! ATTGATTTATTATGTTGTGC+AGG - chr1_2:72935330-72935349 Msa0090830:intron 25.0%
! TTAGAATATATTCTCAGTAG+GGG + chr1_2:72935463-72935482 None:intergenic 25.0%
! GTTAGAATATATTCTCAGTA+GGG + chr1_2:72935464-72935483 None:intergenic 25.0%
! AGTTAGAATATATTCTCAGT+AGG + chr1_2:72935465-72935484 None:intergenic 25.0%
! TGAATATCAGAAAATATGGT+AGG + chr1_2:72935709-72935728 None:intergenic 25.0%
! AGACTGAATATCAGAAAATA+TGG + chr1_2:72935713-72935732 None:intergenic 25.0%
AATAGATCGCTGCATAAAAA+TGG + chr1_2:72930917-72930936 None:intergenic 30.0%
!!! TTTTTTGTTGGATTTCAGCT+TGG - chr1_2:72931284-72931303 Msa0090830:intron 30.0%
ATGAAAATCTGCCCTAAAAA+GGG + chr1_2:72931619-72931638 None:intergenic 30.0%
GCACACATATATTTCTTACT+TGG + chr1_2:72931667-72931686 None:intergenic 30.0%
AATTGAATTATGGGGATATC+TGG - chr1_2:72931727-72931746 Msa0090830:intron 30.0%
! ACTGCTGTTTGATAATTTGT+TGG + chr1_2:72931878-72931897 None:intergenic 30.0%
TGTGTTAAAATTCCACTTTC+AGG - chr1_2:72932223-72932242 Msa0090830:intron 30.0%
! ATGGAAATTGATGATCACAT+TGG - chr1_2:72932269-72932288 Msa0090830:intron 30.0%
AGCTAAGAAGTTATATACCA+TGG + chr1_2:72932617-72932636 None:intergenic 30.0%
TATATATTCCATCTAAGCCA+TGG - chr1_2:72933108-72933127 Msa0090830:intron 30.0%
AACACAGAAAATGAGTCAAA+AGG + chr1_2:72933162-72933181 None:intergenic 30.0%
! GTATGTTACACTTTCTTTTC+TGG - chr1_2:72933234-72933253 Msa0090830:intron 30.0%
! ATGTTACACTTTCTTTTCTG+GGG - chr1_2:72933236-72933255 Msa0090830:intron 30.0%
! GAGAATGATGCTATAGTTTT+AGG - chr1_2:72933584-72933603 Msa0090830:intron 30.0%
! GTAAATACATCTTTTCTGTG+CGG - chr1_2:72933640-72933659 Msa0090830:intron 30.0%
TTCTTGTTCAAACTAGTTCA+TGG - chr1_2:72933723-72933742 Msa0090830:intron 30.0%
TTGAGTCTCAAATCCTAATT+GGG + chr1_2:72933810-72933829 None:intergenic 30.0%
ATTGAGTCTCAAATCCTAAT+TGG + chr1_2:72933811-72933830 None:intergenic 30.0%
!! TGCATTAATTTGTCTGTGAT+GGG + chr1_2:72933857-72933876 None:intergenic 30.0%
AGAAAATAATTGCACAGCAT+GGG - chr1_2:72933892-72933911 Msa0090830:intron 30.0%
!!! CATGGGTATTTTGATTTTGT+AGG - chr1_2:72933909-72933928 Msa0090830:intron 30.0%
!! GGTTTTTCAATAGAACATCA+CGG + chr1_2:72934464-72934483 None:intergenic 30.0%
TATAAGCGAGACTATTAAGA+AGG + chr1_2:72934518-72934537 None:intergenic 30.0%
TTCTACCATCTTTCTACTAT+AGG - chr1_2:72934654-72934673 Msa0090830:intron 30.0%
TCATCTATAGTAGAAAGATG+GGG + chr1_2:72934685-72934704 None:intergenic 30.0%
GTCATCTATAGTAGAAAGAT+GGG + chr1_2:72934686-72934705 None:intergenic 30.0%
! AAATTCTTTTAGACGCAGAA+AGG + chr1_2:72934738-72934757 None:intergenic 30.0%
TTTCTGCGTCTAAAAGAATT+TGG - chr1_2:72934737-72934756 Msa0090830:intron 30.0%
TTCTGCGTCTAAAAGAATTT+GGG - chr1_2:72934738-72934757 Msa0090830:intron 30.0%
AAAAGAATTTGGGCTCTATT+TGG - chr1_2:72934748-72934767 Msa0090830:intron 30.0%
TCTCCATTTCTCAAAACAAA+TGG + chr1_2:72934879-72934898 None:intergenic 30.0%
AAGATTATCTTTCAGGATAG+AGG - chr1_2:72935274-72935293 Msa0090830:intron 30.0%
GACATGAAAACAAGTGAATT+TGG - chr1_2:72935306-72935325 Msa0090830:intron 30.0%
!! ATCAATTCTGAAGCAAGTTA+TGG - chr1_2:72935387-72935406 Msa0090830:CDS 30.0%
TAGAATATATTCTCAGTAGG+GGG + chr1_2:72935462-72935481 None:intergenic 30.0%
AATCAAATCACGCAAATAGA+TGG + chr1_2:72935609-72935628 None:intergenic 30.0%
ATCTAGTATTGCATACAACT+TGG + chr1_2:72935683-72935702 None:intergenic 30.0%
CTAGTATATATTATCGAGTG+TGG - chr1_2:72935854-72935873 Msa0090830:five_prime_UTR 30.0%
!!! GTGTGATATGGGCTTTTTTA+TGG + chr1_2:72930782-72930801 None:intergenic 35.0%
! GATTTTTCGCAGTGTGATAT+GGG + chr1_2:72930793-72930812 None:intergenic 35.0%
AAACCAACATGTTTCTCACA+AGG - chr1_2:72930967-72930986 Msa0090830:three_prime_UTR 35.0%
TAACCTTGTGAGAAACATGT+TGG + chr1_2:72930973-72930992 None:intergenic 35.0%
TAAAAGAGAGAGAGAGGAAA+GGG + chr1_2:72930998-72931017 None:intergenic 35.0%
ATAAAAGAGAGAGAGAGGAA+AGG + chr1_2:72930999-72931018 None:intergenic 35.0%
! CTCAGTTCTAATTCATTCAC+AGG + chr1_2:72931117-72931136 None:intergenic 35.0%
TTAACTATCTGTATTCGGGT+TGG - chr1_2:72931245-72931264 Msa0090830:intron 35.0%
!! ATTGGCTTGAAAACGAAAGA+GGG - chr1_2:72931317-72931336 Msa0090830:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr1_2:72931510-72931529 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr1_2:72931509-72931528 Msa0090830:intron 35.0%
CATACAATACACCAAATGGT+GGG - chr1_2:72931535-72931554 Msa0090830:intron 35.0%
!!! TACCCTTTTTTGCCCTTTTT+AGG - chr1_2:72931604-72931623 Msa0090830:intron 35.0%
!!! ACCCTTTTTTGCCCTTTTTA+GGG - chr1_2:72931605-72931624 Msa0090830:intron 35.0%
GATGAAAATCTGCCCTAAAA+AGG + chr1_2:72931620-72931639 None:intergenic 35.0%
CATTATTAACCTCACCATAG+CGG + chr1_2:72931793-72931812 None:intergenic 35.0%
AAGTTTGTGGACATTTCACA+TGG + chr1_2:72932037-72932056 None:intergenic 35.0%
AAAACTGGGTATAACACGTT+TGG + chr1_2:72932086-72932105 None:intergenic 35.0%
! ATAATTTTCTCCACACTGCT+GGG + chr1_2:72932251-72932270 None:intergenic 35.0%
TGCTTACAGTGCTTTCTTTA+AGG - chr1_2:72932665-72932684 Msa0090830:CDS 35.0%
TTCAGAATATGCAACACACA+AGG + chr1_2:72932752-72932771 None:intergenic 35.0%
!! ATACTTACTAGTGGTGTTGT+TGG - chr1_2:72932968-72932987 Msa0090830:intron 35.0%
GGAATATATACTTACAGGCT+AGG + chr1_2:72933098-72933117 None:intergenic 35.0%
GTGTAACATACAAGGAACAA+CGG + chr1_2:72933225-72933244 None:intergenic 35.0%
AATTACAGAGAAAGGACATG+TGG - chr1_2:72933267-72933286 Msa0090830:intron 35.0%
! AAGAACAGTCGCAATTTTTC+TGG - chr1_2:72933303-72933322 Msa0090830:intron 35.0%
GGATATTCATATGCAAAGAG+TGG - chr1_2:72933324-72933343 Msa0090830:intron 35.0%
!! TTTTGTTTCACTTGGTTCCT+TGG - chr1_2:72933420-72933439 Msa0090830:intron 35.0%
TGTATTTACGCACACATCAA+TGG + chr1_2:72933629-72933648 None:intergenic 35.0%
GTTTCCTGTTATGGTTCAAA+AGG + chr1_2:72933762-72933781 None:intergenic 35.0%
CCACTAAATGTTTCCTGTTA+TGG + chr1_2:72933771-72933790 None:intergenic 35.0%
CCATAACAGGAAACATTTAG+TGG - chr1_2:72933768-72933787 Msa0090830:intron 35.0%
AGGAAACATTTAGTGGTAGT+TGG - chr1_2:72933775-72933794 Msa0090830:intron 35.0%
TGAGTCTCAAATCCTAATTG+GGG + chr1_2:72933809-72933828 None:intergenic 35.0%
! TAATTTGTCTGTGATGGGAA+TGG + chr1_2:72933852-72933871 None:intergenic 35.0%
!! CTGCATTAATTTGTCTGTGA+TGG + chr1_2:72933858-72933877 None:intergenic 35.0%
CAGAAAATAATTGCACAGCA+TGG - chr1_2:72933891-72933910 Msa0090830:intron 35.0%
CCAATAGTCCAGAATGAAAA+AGG + chr1_2:72934003-72934022 None:intergenic 35.0%
!! CCTTTTTCATTCTGGACTAT+TGG - chr1_2:72934000-72934019 Msa0090830:intron 35.0%
AGATATTACACTGATCCTTC+TGG - chr1_2:72934052-72934071 Msa0090830:intron 35.0%
!! ATTTTGGCAATGCAATGCAA+AGG - chr1_2:72934078-72934097 Msa0090830:intron 35.0%
TCTGCAAGAACAATTCAACA+AGG - chr1_2:72934135-72934154 Msa0090830:intron 35.0%
TAATAAGCTGGAGAAAGACA+TGG + chr1_2:72934485-72934504 None:intergenic 35.0%
TCTCCAGCTTATTAATCTCT+AGG - chr1_2:72934491-72934510 Msa0090830:CDS 35.0%
! GTCTCGCTTATAGTTTTTCT+AGG - chr1_2:72934526-72934545 Msa0090830:intron 35.0%
AGTCAAATCACTAGAGATAG+GGG + chr1_2:72934556-72934575 None:intergenic 35.0%
GAGTCAAATCACTAGAGATA+GGG + chr1_2:72934557-72934576 None:intergenic 35.0%
CTCCTTACTACAAAATCCAT+AGG - chr1_2:72934595-72934614 Msa0090830:intron 35.0%
! GACCTATGGATTTTGTAGTA+AGG + chr1_2:72934600-72934619 None:intergenic 35.0%
AAATTAGACTCAGGTGGTTT+GGG + chr1_2:72934636-72934655 None:intergenic 35.0%
AGATGGTAGAAATTAGACTC+AGG + chr1_2:72934645-72934664 None:intergenic 35.0%
CAGTACCTATAGTAGAAAGA+TGG + chr1_2:72934662-72934681 None:intergenic 35.0%
CGTCATCTATAGTAGAAAGA+TGG + chr1_2:72934687-72934706 None:intergenic 35.0%
!!! GCTCCATTTGTTTTGAGAAA+TGG - chr1_2:72934873-72934892 Msa0090830:intron 35.0%
TAACAACTCTCCTCATTATG+GGG + chr1_2:72934973-72934992 None:intergenic 35.0%
GTAACAACTCTCCTCATTAT+GGG + chr1_2:72934974-72934993 None:intergenic 35.0%
CATATAGATCCAAGAATTCC+AGG + chr1_2:72934996-72935015 None:intergenic 35.0%
AACTGGAAGTAACATGCATT+TGG + chr1_2:72935433-72935452 None:intergenic 35.0%
CTCTTCTGTACTTTCACATT+AGG - chr1_2:72935488-72935507 Msa0090830:intron 35.0%
CGCAAATAGATGGAAATCAT+AGG + chr1_2:72935599-72935618 None:intergenic 35.0%
TAAAATAGTATCGCAGCGTT+TGG - chr1_2:72935749-72935768 Msa0090830:intron 35.0%
AAAATAGTATCGCAGCGTTT+GGG - chr1_2:72935750-72935769 Msa0090830:intron 35.0%
TATATTATCGAGTGTGGAGA+TGG - chr1_2:72935860-72935879 Msa0090830:five_prime_UTR 35.0%
! CGATTTTTCGCAGTGTGATA+TGG + chr1_2:72930794-72930813 None:intergenic 40.0%
! GAAGAGAAAGAGTGTGAGAT+GGG + chr1_2:72930863-72930882 None:intergenic 40.0%
! AGAAGAGAAAGAGTGTGAGA+TGG + chr1_2:72930864-72930883 None:intergenic 40.0%
AGATCGCTGCATAAAAATGG+CGG + chr1_2:72930914-72930933 None:intergenic 40.0%
ATTAGAACTGAGTATGACCG+TGG - chr1_2:72931125-72931144 Msa0090830:three_prime_UTR 40.0%
!! GAGAAAAAGTGTTGACTCCA+CGG + chr1_2:72931145-72931164 None:intergenic 40.0%
AACCTGAAACAAACGTCCTT+CGG + chr1_2:72931168-72931187 None:intergenic 40.0%
!! GATTGGCTTGAAAACGAAAG+AGG - chr1_2:72931316-72931335 Msa0090830:intron 40.0%
GAATAGGTACATACCAGTAG+AGG + chr1_2:72931377-72931396 None:intergenic 40.0%
!! TTTAGGGCAGATTTTCATCG+AGG - chr1_2:72931424-72931443 Msa0090830:intron 40.0%
! TTAGGGCAGATTTTCATCGA+GGG - chr1_2:72931425-72931444 Msa0090830:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr1_2:72931503-72931522 Msa0090830:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr1_2:72931504-72931523 Msa0090830:intron 40.0%
GCTGCATACAATACACCAAA+TGG - chr1_2:72931531-72931550 Msa0090830:intron 40.0%
GCATACAATACACCAAATGG+TGG - chr1_2:72931534-72931553 Msa0090830:intron 40.0%
GCCCTAAAAAGGGCAAAAAA+GGG + chr1_2:72931609-72931628 None:intergenic 40.0%
TGCCCTAAAAAGGGCAAAAA+AGG + chr1_2:72931610-72931629 None:intergenic 40.0%
CGCTATGGTGAGGTTAATAA+TGG - chr1_2:72931791-72931810 Msa0090830:intron 40.0%
ATAACGTCAGTTTAGCAGTG+CGG - chr1_2:72931825-72931844 Msa0090830:intron 40.0%
GTGAAATGTCCACAAACTTG+CGG - chr1_2:72932038-72932057 Msa0090830:intron 40.0%
! CATAATTTTCTCCACACTGC+TGG + chr1_2:72932252-72932271 None:intergenic 40.0%
CAGCAGTGTGGAGAAAATTA+TGG - chr1_2:72932250-72932269 Msa0090830:intron 40.0%
CAGAATCACAGGTTCTCTTA+TGG - chr1_2:72932514-72932533 Msa0090830:intron 40.0%
GTTGTAGACTCTACAGTCAT+CGG + chr1_2:72932544-72932563 None:intergenic 40.0%
! CATGCAAGTTCACAGGTTTT+GGG + chr1_2:72932691-72932710 None:intergenic 40.0%
! TCATGCAAGTTCACAGGTTT+TGG + chr1_2:72932692-72932711 None:intergenic 40.0%
CAGTGGCTTAATCCTTTCAT+AGG + chr1_2:72932868-72932887 None:intergenic 40.0%
! TAAGCCACTGTCCTTTTGTA+AGG - chr1_2:72932878-72932897 Msa0090830:intron 40.0%
AACACCTTACAAAAGGACAG+TGG + chr1_2:72932885-72932904 None:intergenic 40.0%
ATAAGGAGAGACACTCCAAA+TGG + chr1_2:72933053-72933072 None:intergenic 40.0%
AGAAGTAACCATGGCTTAGA+TGG + chr1_2:72933119-72933138 None:intergenic 40.0%
ACATGACTCAGAAGTAACCA+TGG + chr1_2:72933128-72933147 None:intergenic 40.0%
TGCAAAGAGTGGTTAATGAG+TGG - chr1_2:72933335-72933354 Msa0090830:intron 40.0%
! AAGATGGCATGTTACTTCCA+AGG + chr1_2:72933440-72933459 None:intergenic 40.0%
CACACATCAATGGTAAGAGT+AGG + chr1_2:72933619-72933638 None:intergenic 40.0%
ACACTGCATTGTTCAACTCT+CGG - chr1_2:72933674-72933693 Msa0090830:CDS 40.0%
ACTAGTTCATGGTAGCAACA+TGG - chr1_2:72933734-72933753 Msa0090830:intron 40.0%
GAGTCTCAAATCCTAATTGG+GGG + chr1_2:72933808-72933827 None:intergenic 40.0%
TCAGCAGTCACTAGATGATA+CGG - chr1_2:72933948-72933967 Msa0090830:intron 40.0%
CAATGCAATGCAAAGGCTAT+TGG - chr1_2:72934085-72934104 Msa0090830:intron 40.0%
!! AATGCAAAGGCTATTGGTTC+AGG - chr1_2:72934091-72934110 Msa0090830:intron 40.0%
AGGTATCCATGTTCTTACAG+TGG - chr1_2:72934155-72934174 Msa0090830:CDS 40.0%
GGTATCCATGTTCTTACAGT+GGG - chr1_2:72934156-72934175 Msa0090830:CDS 40.0%
AACAACCCACTGTAAGAACA+TGG + chr1_2:72934164-72934183 None:intergenic 40.0%
TATTAGCTGGGATGGTAAAG+TGG - chr1_2:72934224-72934243 Msa0090830:CDS 40.0%
! ATCTCCATTTTCTCCACAGT+TGG + chr1_2:72934291-72934310 None:intergenic 40.0%
! GCATGCACTAAATTTGAGAC+TGG + chr1_2:72934316-72934335 None:intergenic 40.0%
GTGCATGCAGATTCAAAACA+TGG - chr1_2:72934328-72934347 Msa0090830:intron 40.0%
CTTATCTCACTAAGTGGAGT+CGG - chr1_2:72934419-72934438 Msa0090830:CDS 40.0%
GGACCTAGAGATTAATAAGC+TGG + chr1_2:72934497-72934516 None:intergenic 40.0%
GGAGTCAAATCACTAGAGAT+AGG + chr1_2:72934558-72934577 None:intergenic 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr1_2:72934584-72934603 None:intergenic 40.0%
GAAATTAGACTCAGGTGGTT+TGG + chr1_2:72934637-72934656 None:intergenic 40.0%
TGGTAGAAATTAGACTCAGG+TGG + chr1_2:72934642-72934661 None:intergenic 40.0%
ACGCAGAAAGGATCTTAAGA+GGG + chr1_2:72934726-72934745 None:intergenic 40.0%
GGTAACAACTCTCCTCATTA+TGG + chr1_2:72934975-72934994 None:intergenic 40.0%
TAATGAGGAGAGTTGTTACC+TGG - chr1_2:72934975-72934994 Msa0090830:intron 40.0%
GAGTTGTTACCTGGAATTCT+TGG - chr1_2:72934984-72935003 Msa0090830:intron 40.0%
GAAGCAAGTTATGGAAGAGA+AGG - chr1_2:72935396-72935415 Msa0090830:CDS 40.0%
! CGCGTTTGCAAAGCTTTTTA+TGG - chr1_2:72935886-72935905 Msa0090830:five_prime_UTR 40.0%
TACCTAAAAGACCTCTCGCT+GGG + chr1_2:72930831-72930850 None:intergenic 45.0%
TTACCTAAAAGACCTCTCGC+TGG + chr1_2:72930832-72930851 None:intergenic 45.0%
GTGCGATAAAAGAGAGAGAG+AGG + chr1_2:72931004-72931023 None:intergenic 45.0%
!!! GTCAACACTTTTTCTCCCGA+AGG - chr1_2:72931149-72931168 Msa0090830:exon 45.0%
ACCTGAAACAAACGTCCTTC+GGG + chr1_2:72931167-72931186 None:intergenic 45.0%
CTTGAAAACGAAAGAGGGTG+TGG - chr1_2:72931322-72931341 Msa0090830:intron 45.0%
! TAGGGCAGATTTTCATCGAG+GGG - chr1_2:72931426-72931445 Msa0090830:intron 45.0%
! TTTTCATCGAGGGGTAACCT+TGG - chr1_2:72931435-72931454 Msa0090830:intron 45.0%
GCAACTGGTATGTGACTGTA+AGG - chr1_2:72931459-72931478 Msa0090830:intron 45.0%
GGTATGTGACTGTAAGGTCA+CGG - chr1_2:72931465-72931484 Msa0090830:intron 45.0%
GTATGTGACTGTAAGGTCAC+GGG - chr1_2:72931466-72931485 Msa0090830:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr1_2:72931499-72931518 None:intergenic 45.0%
AAGGGCAAAAAAGGGTAACC+CGG + chr1_2:72931601-72931620 None:intergenic 45.0%
! TCATCCCTCTATCCCACTTT+TGG - chr1_2:72931897-72931916 Msa0090830:intron 45.0%
!! CATCCCTCTATCCCACTTTT+GGG - chr1_2:72931898-72931917 Msa0090830:intron 45.0%
!! ATCCCTCTATCCCACTTTTG+GGG - chr1_2:72931899-72931918 Msa0090830:intron 45.0%
AACCCCAAAAGTGGGATAGA+GGG + chr1_2:72931904-72931923 None:intergenic 45.0%
GACTACGCACATGTTTGTCT+TGG - chr1_2:72931951-72931970 Msa0090830:intron 45.0%
TACGCACATGTTTGTCTTGG+TGG - chr1_2:72931954-72931973 Msa0090830:intron 45.0%
AAATGTCCACAAACTTGCGG+TGG - chr1_2:72932041-72932060 Msa0090830:intron 45.0%
AATGTCCACAAACTTGCGGT+GGG - chr1_2:72932042-72932061 Msa0090830:intron 45.0%
! ACACGTTTGGATGTGCGTTT+TGG + chr1_2:72932073-72932092 None:intergenic 45.0%
GGAAGGTGATGAAGAATCCA+TGG - chr1_2:72932597-72932616 Msa0090830:intron 45.0%
AAGCGATCATGCAAGTTCAC+AGG + chr1_2:72932698-72932717 None:intergenic 45.0%
!! AAAGAAGTGATGGGCGAAGA+TGG + chr1_2:72933456-72933475 None:intergenic 45.0%
! GGCACCTTTTGAACCATAAC+AGG - chr1_2:72933755-72933774 Msa0090830:intron 45.0%
TTGGCATCTTACCCCCAATT+AGG - chr1_2:72933794-72933813 Msa0090830:intron 45.0%
! CTGATCCTTCTGGCACATTT+TGG - chr1_2:72934062-72934081 Msa0090830:intron 45.0%
CATTGCCAAAATGTGCCAGA+AGG + chr1_2:72934070-72934089 None:intergenic 45.0%
!! GCTATTGGTTCAGGATCAGA+AGG - chr1_2:72934100-72934119 Msa0090830:intron 45.0%
! CATTTTCTCCACAGTTGGAG+AGG + chr1_2:72934286-72934305 None:intergenic 45.0%
CTCTCCAACTGTGGAGAAAA+TGG - chr1_2:72934284-72934303 Msa0090830:intron 45.0%
CCACTTAGTGAGATAAGGCT+TGG + chr1_2:72934416-72934435 None:intergenic 45.0%
! CCAAGCCTTATCTCACTAAG+TGG - chr1_2:72934413-72934432 Msa0090830:CDS 45.0%
CGACTCCACTTAGTGAGATA+AGG + chr1_2:72934421-72934440 None:intergenic 45.0%
AGGAGAGTAGATCAGATGGA+GGG + chr1_2:72934580-72934599 None:intergenic 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr1_2:72934581-72934600 None:intergenic 45.0%
GCATGTAGAGAGAAGACCTA+TGG + chr1_2:72934614-72934633 None:intergenic 45.0%
CGCAGAAAGGATCTTAAGAG+GGG + chr1_2:72934725-72934744 None:intergenic 45.0%
GACGCAGAAAGGATCTTAAG+AGG + chr1_2:72934727-72934746 None:intergenic 45.0%
TTCTCCATTCTCTCCTCGAA+TGG - chr1_2:72934935-72934954 Msa0090830:intron 45.0%
GGCGAAACCCCAAAGAATTA+AGG + chr1_2:72935094-72935113 None:intergenic 45.0%
CTGGCAATGTCAACGTTGTT+GGG + chr1_2:72935519-72935538 None:intergenic 45.0%
CAACAACGTTGACATTGCCA+GGG - chr1_2:72935518-72935537 Msa0090830:intron 45.0%
GGGGTATAAAGATGATACGC+TGG + chr1_2:72935549-72935568 None:intergenic 45.0%
TCATCTTTATACCCCGTCTG+AGG - chr1_2:72935554-72935573 Msa0090830:CDS 45.0%
!! AAAAAAAAAATTACATAAAA+GGG + chr1_2:72931399-72931418 None:intergenic 5.0%
!!! AATTTTTTTTTTGTTAATTT+AGG - chr1_2:72931407-72931426 Msa0090830:intron 5.0%
!!! ATTTTTTTTTTGTTAATTTA+GGG - chr1_2:72931408-72931427 Msa0090830:intron 5.0%
CAAACCAAAAACCCAGCGAG+AGG - chr1_2:72930817-72930836 Msa0090830:three_prime_UTR 50.0%
! AAGACCTCTCGCTGGGTTTT+TGG + chr1_2:72930824-72930843 None:intergenic 50.0%
! AACCCAGCGAGAGGTCTTTT+AGG - chr1_2:72930826-72930845 Msa0090830:three_prime_UTR 50.0%
! CATAAAAATGGCGGAGCGGA+GGG + chr1_2:72930905-72930924 None:intergenic 50.0%
! GCTGCATAAAAATGGCGGAG+CGG + chr1_2:72930909-72930928 None:intergenic 50.0%
TCCCGAAGGACGTTTGTTTC+AGG - chr1_2:72931163-72931182 Msa0090830:CDS 50.0%
CAGCTTGGATCAACTGCGAT+TGG - chr1_2:72931299-72931318 Msa0090830:intron 50.0%
GCGTATTACTTCGCCTCTAC+TGG - chr1_2:72931361-72931380 Msa0090830:CDS 50.0%
AAAATAGCGCCGCTATGGTG+AGG - chr1_2:72931781-72931800 Msa0090830:intron 50.0%
TCAGTTTAGCAGTGCGGAGT+GGG - chr1_2:72931831-72931850 Msa0090830:intron 50.0%
CAACCCCAAAAGTGGGATAG+AGG + chr1_2:72931905-72931924 None:intergenic 50.0%
GTCAATCCTGCATTGTGGTG+CGG + chr1_2:72931934-72931953 None:intergenic 50.0%
GCGTAGTCAATCCTGCATTG+TGG + chr1_2:72931939-72931958 None:intergenic 50.0%
GCACATGTTTGTCTTGGTGG+TGG - chr1_2:72931957-72931976 Msa0090830:intron 50.0%
ATGTCCACAAACTTGCGGTG+GGG - chr1_2:72932043-72932062 Msa0090830:intron 50.0%
! CACATTGGCTGTGCAATGAG+TGG - chr1_2:72932284-72932303 Msa0090830:intron 50.0%
! GCATGCACGAGTTGAAACTC+AGG - chr1_2:72932337-72932356 Msa0090830:intron 50.0%
CTTTGGCAGTCTCGACCATT+TGG - chr1_2:72933035-72933054 Msa0090830:intron 50.0%
! GGAGTGTCTCTCCTTATTGC+TGG - chr1_2:72933056-72933075 Msa0090830:intron 50.0%
TCTCGTCATGGCCAGCAATA+AGG + chr1_2:72933070-72933089 None:intergenic 50.0%
ATTGCTGGCCATGACGAGAA+TGG - chr1_2:72933071-72933090 Msa0090830:intron 50.0%
!! CTGGACTATTGGTCTTGCTG+AGG - chr1_2:72934011-72934030 Msa0090830:intron 50.0%
GGAGAGTAGATCAGATGGAG+GGG + chr1_2:72934579-72934598 None:intergenic 50.0%
TATAGATGACGAACCCTCGC+TGG - chr1_2:72934696-72934715 Msa0090830:intron 50.0%
CTCTCCATTCGAGGAGAGAA+TGG + chr1_2:72934942-72934961 None:intergenic 50.0%
CATTCTCTCCTCGAATGGAG+AGG - chr1_2:72934940-72934959 Msa0090830:intron 50.0%
AGGATGCAGACCCCATAATG+AGG - chr1_2:72934960-72934979 Msa0090830:intron 50.0%
TCAGTAGGGGGACAAACAAC+TGG + chr1_2:72935450-72935469 None:intergenic 50.0%
CCTGGCAATGTCAACGTTGT+TGG + chr1_2:72935520-72935539 None:intergenic 50.0%
CCAACAACGTTGACATTGCC+AGG - chr1_2:72935517-72935536 Msa0090830:intron 50.0%
TCTTTATACCCCGTCTGAGG+TGG - chr1_2:72935557-72935576 Msa0090830:CDS 50.0%
ATCACAGCTTCCACCTCAGA+CGG + chr1_2:72935570-72935589 None:intergenic 50.0%
GAGCGGAGGGTTGAGAAATC+GGG + chr1_2:72930892-72930911 None:intergenic 55.0%
GGAGCGGAGGGTTGAGAAAT+CGG + chr1_2:72930893-72930912 None:intergenic 55.0%
! GCATAAAAATGGCGGAGCGG+AGG + chr1_2:72930906-72930925 None:intergenic 55.0%
GTCACATACCAGTTGCGCCA+AGG + chr1_2:72931455-72931474 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr1_2:72931478-72931497 Msa0090830:intron 55.0%
AGCGCAAAATAGCGCCGCTA+TGG - chr1_2:72931776-72931795 Msa0090830:intron 55.0%
GTCAGTTTAGCAGTGCGGAG+TGG - chr1_2:72931830-72931849 Msa0090830:intron 55.0%
CAGTTTAGCAGTGCGGAGTG+GGG - chr1_2:72931832-72931851 Msa0090830:intron 55.0%
AGTTTAGCAGTGCGGAGTGG+GGG - chr1_2:72931833-72931852 Msa0090830:intron 55.0%
GAGCGGTCAACCCCAAAAGT+GGG + chr1_2:72931912-72931931 None:intergenic 55.0%
TGTCCACAAACTTGCGGTGG+GGG - chr1_2:72932044-72932063 Msa0090830:intron 55.0%
!! TGTGACCTAGCCTTGCGCTT+TGG - chr1_2:72932574-72932593 Msa0090830:intron 55.0%
!! GTGACCTAGCCTTGCGCTTT+GGG - chr1_2:72932575-72932594 Msa0090830:intron 55.0%
!! TGACCTAGCCTTGCGCTTTG+GGG - chr1_2:72932576-72932595 Msa0090830:intron 55.0%
ATCACCTTCCCCAAAGCGCA+AGG + chr1_2:72932587-72932606 None:intergenic 55.0%
GGCTAGGTCCATTCTCGTCA+TGG + chr1_2:72933082-72933101 None:intergenic 55.0%
TTAAGAGGGGTGACCAGCGA+GGG + chr1_2:72934712-72934731 None:intergenic 55.0%
GTCTGCATCCTCTCCATTCG+AGG + chr1_2:72934951-72934970 None:intergenic 55.0%
ATGATACGCTGGAGCAACCC+TGG + chr1_2:72935538-72935557 None:intergenic 55.0%
TCACAGCTTCCACCTCAGAC+GGG + chr1_2:72935569-72935588 None:intergenic 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_2:72931444-72931463 Msa0090830:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_2:72931547-72931566 Msa0090830:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr1_2:72931574-72931593 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr1_2:72931575-72931594 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr1_2:72931579-72931598 Msa0090830:intron 60.0%
GGAGCGGTCAACCCCAAAAG+TGG + chr1_2:72931913-72931932 None:intergenic 60.0%
TCCTGCATTGTGGTGCGGAG+CGG + chr1_2:72931929-72931948 None:intergenic 60.0%
TCACCCCCACCGCAAGTTTG+TGG + chr1_2:72932050-72932069 None:intergenic 60.0%
CACTGCTGGGCTCCTGAAAG+TGG + chr1_2:72932238-72932257 None:intergenic 60.0%
CTTTCAGGAGCCCAGCAGTG+TGG - chr1_2:72932238-72932257 Msa0090830:intron 60.0%
CTTCCCCAAAGCGCAAGGCT+AGG + chr1_2:72932582-72932601 None:intergenic 60.0%
!! CTAGCCTTGCGCTTTGGGGA+AGG - chr1_2:72932580-72932599 Msa0090830:intron 60.0%
GTCCAGCTCCTCTCCAACTG+TGG - chr1_2:72934275-72934294 Msa0090830:intron 60.0%
CTCCACAGTTGGAGAGGAGC+TGG + chr1_2:72934280-72934299 None:intergenic 60.0%
CTTAAGAGGGGTGACCAGCG+AGG + chr1_2:72934713-72934732 None:intergenic 60.0%
CACAGCTTCCACCTCAGACG+GGG + chr1_2:72935568-72935587 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_2:72931549-72931568 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr1_2:72931562-72931581 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr1_2:72931563-72931582 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr1_2:72931562-72931581 Msa0090830:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr1_2:72931563-72931582 Msa0090830:intron 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr1_2:72931580-72931599 Msa0090830:intron 65.0%
ACCGCTCCGCACCACAATGC+AGG - chr1_2:72931925-72931944 Msa0090830:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr1_2:72931564-72931583 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr1_2:72931568-72931587 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr1_2:72931569-72931588 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72930767 72935995 72930767 ID=Msa0090830;Name=Msa0090830
chr1_2 mRNA 72930767 72935995 72930767 ID=Msa0090830-mRNA-1;Parent=Msa0090830;Name=Msa0090830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=187|1|1|1|0.88|0.8|10|393|237
chr1_2 exon 72930767 72931252 72930767 ID=Msa0090830-mRNA-1:exon:25396;Parent=Msa0090830-mRNA-1
chr1_2 exon 72931345 72931410 72931345 ID=Msa0090830-mRNA-1:exon:25395;Parent=Msa0090830-mRNA-1
chr1_2 exon 72932606 72932708 72932606 ID=Msa0090830-mRNA-1:exon:25394;Parent=Msa0090830-mRNA-1
chr1_2 exon 72933660 72933718 72933660 ID=Msa0090830-mRNA-1:exon:25393;Parent=Msa0090830-mRNA-1
chr1_2 exon 72934144 72934245 72934144 ID=Msa0090830-mRNA-1:exon:25392;Parent=Msa0090830-mRNA-1
chr1_2 exon 72934404 72934517 72934404 ID=Msa0090830-mRNA-1:exon:25391;Parent=Msa0090830-mRNA-1
chr1_2 exon 72935380 72935460 72935380 ID=Msa0090830-mRNA-1:exon:25390;Parent=Msa0090830-mRNA-1
chr1_2 exon 72935551 72935632 72935551 ID=Msa0090830-mRNA-1:exon:25389;Parent=Msa0090830-mRNA-1
chr1_2 exon 72935774 72935958 72935774 ID=Msa0090830-mRNA-1:exon:25388;Parent=Msa0090830-mRNA-1
chr1_2 exon 72935980 72935995 72935980 ID=Msa0090830-mRNA-1:exon:25387;Parent=Msa0090830-mRNA-1
chr1_2 five_prime_UTR 72935980 72935995 72935980 ID=Msa0090830-mRNA-1:five_prime_utr;Parent=Msa0090830-mRNA-1
chr1_2 five_prime_UTR 72935788 72935958 72935788 ID=Msa0090830-mRNA-1:five_prime_utr;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72935774 72935787 72935774 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72935551 72935632 72935551 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72935380 72935460 72935380 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72934404 72934517 72934404 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72934144 72934245 72934144 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72933660 72933718 72933660 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72932606 72932708 72932606 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72931345 72931410 72931345 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 CDS 72931160 72931252 72931160 ID=Msa0090830-mRNA-1:cds;Parent=Msa0090830-mRNA-1
chr1_2 three_prime_UTR 72930767 72931159 72930767 ID=Msa0090830-mRNA-1:three_prime_utr;Parent=Msa0090830-mRNA-1
Gene Sequence

>Msa0090830

ATGTTTCTCACAAGAACTGAGTATGACCGTGGAGTCAACACTTTTTCTCCCGAAGGACGTTTGTTTCAGGTTGAATATGCAATTGAAGCTATTAAGCTTGGATCAACTGCGATTGGCTTGAAAACGAAAGAGGGTGTGGTTCTTGCTGTTGAAAAGCGTATTACTTCGCCTCTACTGGAGCCCAGCAGTGTGGAGAAAATTATGGAAATTGATGATCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCACAGGTTCTCTTATGGTGAACCGATGACTGTAGAGTCTACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGGGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTTATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGCACATTTTGGCAATGCAATGCAAAGGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTAACTCTTAAAGAAGCTGAGACTATTGCTTTATCAATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCGTATCATCTTTATACCCCGTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA

Protein sequence

>Msa0090830

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLKEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVISRL*