Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092060 | XP_024635341.1 | 96.330 | 218 | 3 | 1 | 1 | 218 | 348 | 560 | 4.80e-149 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092060 | sp|Q6TGC6|CBK1_PNECA | 42.568 | 148 | 77 | 3 | 1 | 146 | 361 | 502 | 2.37e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092060 | A0A072VLK6 | 96.330 | 218 | 3 | 1 | 1 | 218 | 348 | 560 | 2.29e-149 | 436 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092060 | Msa0122810 | 0.855429 | 6.344962e-62 | -8.615850e-47 |
| Msa0092060 | Msa1041730 | 0.809735 | 1.633573e-50 | -8.615850e-47 |
| Msa0092060 | Msa1167220 | 0.813769 | 2.164251e-51 | -8.615850e-47 |
| Msa0092060 | Msa1415940 | 0.819230 | 1.295219e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092060 | MtrunA17_Chr1g0183651 | 96.330 | 218 | 3 | 1 | 1 | 218 | 348 | 560 | 4.42e-153 | 436 |
| Msa0092060 | MtrunA17_Chr1g0187581 | 78.771 | 179 | 33 | 1 | 1 | 179 | 346 | 519 | 2.74e-101 | 303 |
| Msa0092060 | MtrunA17_Chr7g0261491 | 63.090 | 233 | 41 | 4 | 1 | 193 | 348 | 575 | 5.54e-94 | 285 |
| Msa0092060 | MtrunA17_Chr1g0167351 | 71.154 | 208 | 45 | 4 | 1 | 207 | 340 | 533 | 1.56e-93 | 283 |
| Msa0092060 | MtrunA17_Chr1g0167311 | 69.318 | 176 | 47 | 3 | 1 | 176 | 345 | 513 | 1.71e-82 | 254 |
| Msa0092060 | MtrunA17_Chr3g0135951 | 65.541 | 148 | 45 | 2 | 1 | 147 | 331 | 473 | 2.29e-64 | 207 |
| Msa0092060 | MtrunA17_Chr2g0299781 | 59.064 | 171 | 59 | 3 | 1 | 170 | 350 | 510 | 1.19e-58 | 192 |
| Msa0092060 | MtrunA17_Chr1g0153321 | 54.651 | 172 | 70 | 3 | 1 | 172 | 338 | 501 | 1.90e-57 | 189 |
| Msa0092060 | MtrunA17_Chr6g0478601 | 43.810 | 105 | 52 | 4 | 1 | 104 | 330 | 428 | 3.23e-18 | 82.4 |
| Msa0092060 | MtrunA17_Chr4g0018201 | 42.553 | 94 | 47 | 4 | 1 | 93 | 977 | 1064 | 8.64e-14 | 69.7 |
| Msa0092060 | MtrunA17_Chr5g0428981 | 42.553 | 94 | 47 | 4 | 1 | 93 | 981 | 1068 | 1.08e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092060 | AT4G14350.2 | 68.932 | 206 | 49 | 2 | 1 | 206 | 348 | 538 | 1.57e-99 | 299 |
| Msa0092060 | AT4G14350.1 | 68.932 | 206 | 49 | 2 | 1 | 206 | 348 | 538 | 1.57e-99 | 299 |
| Msa0092060 | AT4G14350.4 | 68.932 | 206 | 49 | 2 | 1 | 206 | 348 | 538 | 1.57e-99 | 299 |
| Msa0092060 | AT4G14350.3 | 68.932 | 206 | 49 | 2 | 1 | 206 | 348 | 538 | 1.71e-99 | 299 |
| Msa0092060 | AT3G23310.1 | 66.825 | 211 | 55 | 2 | 1 | 211 | 351 | 546 | 1.54e-96 | 292 |
| Msa0092060 | AT2G20470.2 | 67.907 | 215 | 55 | 3 | 1 | 207 | 351 | 559 | 3.11e-96 | 291 |
| Msa0092060 | AT2G20470.1 | 67.907 | 215 | 55 | 3 | 1 | 207 | 351 | 559 | 3.11e-96 | 291 |
| Msa0092060 | AT2G20470.3 | 74.857 | 175 | 38 | 2 | 1 | 175 | 351 | 519 | 9.71e-93 | 281 |
| Msa0092060 | AT1G03920.2 | 75.740 | 169 | 36 | 1 | 1 | 169 | 252 | 415 | 2.66e-86 | 263 |
| Msa0092060 | AT1G03920.1 | 75.740 | 169 | 36 | 1 | 1 | 169 | 365 | 528 | 2.04e-85 | 263 |
| Msa0092060 | AT1G03920.3 | 75.740 | 169 | 36 | 1 | 1 | 169 | 365 | 528 | 2.04e-85 | 263 |
| Msa0092060 | AT1G30640.3 | 60.215 | 186 | 69 | 1 | 1 | 186 | 260 | 440 | 3.14e-78 | 242 |
| Msa0092060 | AT1G30640.2 | 60.215 | 186 | 69 | 1 | 1 | 186 | 353 | 533 | 1.55e-77 | 243 |
| Msa0092060 | AT1G30640.1 | 60.215 | 186 | 69 | 1 | 1 | 186 | 353 | 533 | 1.55e-77 | 243 |
| Msa0092060 | AT4G33080.2 | 63.946 | 147 | 46 | 3 | 1 | 145 | 331 | 472 | 2.59e-59 | 194 |
| Msa0092060 | AT4G33080.1 | 63.946 | 147 | 46 | 3 | 1 | 145 | 331 | 472 | 2.72e-59 | 194 |
| Msa0092060 | AT5G09890.2 | 51.613 | 186 | 80 | 3 | 1 | 182 | 334 | 513 | 2.91e-59 | 194 |
| Msa0092060 | AT5G09890.1 | 51.613 | 186 | 79 | 4 | 1 | 182 | 334 | 512 | 8.45e-58 | 191 |
| Msa0092060 | AT2G19400.1 | 59.459 | 148 | 52 | 3 | 1 | 145 | 342 | 484 | 2.93e-57 | 189 |
| Msa0092060 | AT1G48490.4 | 41.509 | 106 | 55 | 3 | 1 | 105 | 1042 | 1141 | 3.31e-18 | 83.2 |
| Msa0092060 | AT1G48490.3 | 41.509 | 106 | 55 | 3 | 1 | 105 | 1041 | 1140 | 3.41e-18 | 83.2 |
| Msa0092060 | AT1G48490.2 | 41.509 | 106 | 55 | 3 | 1 | 105 | 1041 | 1140 | 3.41e-18 | 83.2 |
| Msa0092060 | AT1G48490.1 | 41.509 | 106 | 55 | 3 | 1 | 105 | 1041 | 1140 | 3.41e-18 | 83.2 |
| Msa0092060 | AT3G17850.1 | 35.484 | 124 | 70 | 5 | 1 | 120 | 1101 | 1218 | 1.48e-15 | 75.5 |
| Msa0092060 | AT1G45160.2 | 38.281 | 128 | 66 | 6 | 1 | 122 | 885 | 1005 | 1.71e-15 | 75.1 |
| Msa0092060 | AT1G45160.1 | 38.281 | 128 | 66 | 6 | 1 | 122 | 885 | 1005 | 2.11e-15 | 75.1 |
| Msa0092060 | AT5G62310.1 | 39.362 | 94 | 50 | 4 | 1 | 93 | 973 | 1060 | 2.49e-13 | 68.9 |
Find 67 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACATTTGGATTTGTTAT+TGG | 0.181265 | 1_2:-74281612 | Msa0092060:three_prime_UTR |
| TTATTGGTTACGCTAATTAA+TGG | 0.252017 | 1_2:-74281596 | Msa0092060:three_prime_UTR |
| CCTACCGAAAAGCGACTTAA+TGG | 0.252034 | 1_2:+74282009 | None:intergenic |
| GATCATGATATTGCGTTGTT+AGG | 0.291141 | 1_2:+74281717 | None:intergenic |
| AATGGATGGTCTCTTTGATT+TGG | 0.326209 | 1_2:+74282027 | None:intergenic |
| TCTCAATGCAATTCCACATT+TGG | 0.326227 | 1_2:-74281624 | Msa0092060:three_prime_UTR |
| ATTGGATCATCAGAATAAAA+AGG | 0.356530 | 1_2:+74286534 | None:intergenic |
| ACCTTCCTACATGTTGTCAT+TGG | 0.369230 | 1_2:+74286516 | None:intergenic |
| AAAAGGTGCTGATGAAATAA+AGG | 0.383499 | 1_2:-74285088 | Msa0092060:intron |
| TTGAAATTTCCTGATGAAGC+TGG | 0.397005 | 1_2:-74285177 | Msa0092060:CDS |
| CTACACTGTAAACAGATTCC+TGG | 0.414597 | 1_2:-74281438 | Msa0092060:three_prime_UTR |
| GGATGGTCTCTTTGATTTGG+AGG | 0.415946 | 1_2:+74282030 | None:intergenic |
| CTATGAGATGCCTCTAACTT+GGG | 0.422534 | 1_2:+74281763 | None:intergenic |
| ACTATGAGATGCCTCTAACT+TGG | 0.425956 | 1_2:+74281762 | None:intergenic |
| TGAGAGTCACATTTAGAATA+CGG | 0.429078 | 1_2:+74281642 | None:intergenic |
| GTCAACGATTATCAAGTTCC+TGG | 0.443000 | 1_2:-74283698 | Msa0092060:CDS |
| CTTTATTGCAGATAGTGAAC+TGG | 0.449043 | 1_2:-74285209 | Msa0092060:intron |
| GGTTCTTCAAAGGTGTTGAA+TGG | 0.450239 | 1_2:-74284963 | Msa0092060:CDS |
| TAACCTCGAGCAAGCTGGCT+TGG | 0.457069 | 1_2:-74281526 | Msa0092060:three_prime_UTR |
| AATATATTTAAATTTAATGC+AGG | 0.461174 | 1_2:+74281279 | None:intergenic |
| TGGTACCTACACTGTTTGAC+TGG | 0.466145 | 1_2:+74281691 | None:intergenic |
| AACCATAGGCTGGGATCAAA+AGG | 0.468193 | 1_2:-74285105 | Msa0092060:CDS |
| GGTGATAGCCCAGCTTCATC+AGG | 0.474221 | 1_2:+74285168 | None:intergenic |
| ATGTAATGTCAACCATAGGC+TGG | 0.475761 | 1_2:-74285115 | Msa0092060:CDS |
| GTTCTTCAAAGGTGTTGAAT+GGG | 0.487558 | 1_2:-74284962 | Msa0092060:CDS |
| TCAAATATATGCATGAGTTA+TGG | 0.489275 | 1_2:+74281671 | None:intergenic |
| TAATTAATGGTTATGAGAAA+AGG | 0.489494 | 1_2:-74281583 | Msa0092060:three_prime_UTR |
| GATGGTCTCTTTGATTTGGA+GGG | 0.490162 | 1_2:+74282031 | None:intergenic |
| TCTGTAACGCTGGAGTCTAA+TGG | 0.490784 | 1_2:-74281328 | Msa0092060:three_prime_UTR |
| CAGGCTCATCGGTTCTTCAA+AGG | 0.491703 | 1_2:-74284973 | Msa0092060:CDS |
| CTGATAAGATCTTTAGCCTC+AGG | 0.500071 | 1_2:+74285147 | None:intergenic |
| AAAGCATTTGTCTGTAACGC+TGG | 0.509045 | 1_2:-74281338 | Msa0092060:three_prime_UTR |
| GCATTCCGCTTCAGGCTCAT+CGG | 0.509283 | 1_2:-74284984 | Msa0092060:intron |
| TGCTATCATGTATGAAATGT+TGG | 0.522016 | 1_2:-74286568 | Msa0092060:exon |
| TGAAATTTCCTGATGAAGCT+GGG | 0.522732 | 1_2:-74285176 | Msa0092060:CDS |
| TAAATTCACAGGTGGTCACT+TGG | 0.524972 | 1_2:-74286591 | None:intergenic |
| TCAACGATTATCAAGTTCCT+GGG | 0.536248 | 1_2:-74283697 | Msa0092060:CDS |
| ACTCGACCGTCGTCAAAAGC+TGG | 0.544275 | 1_2:-74284751 | Msa0092060:CDS |
| GAGAGTCACATTTAGAATAC+GGG | 0.544282 | 1_2:+74281643 | None:intergenic |
| CAACTCTGACGTCTCTGACT+CGG | 0.546437 | 1_2:+74281849 | None:intergenic |
| CGTCGTCAAAAGCTGGTCCA+TGG | 0.552195 | 1_2:-74284744 | Msa0092060:CDS |
| ACCAATAACAAATCCAAATG+TGG | 0.556434 | 1_2:+74281611 | None:intergenic |
| GTAATTAACCTCGAGCAAGC+TGG | 0.557305 | 1_2:-74281531 | Msa0092060:three_prime_UTR |
| TCTAATTCATCATTGACCTC+AGG | 0.562016 | 1_2:+74284907 | None:intergenic |
| CGATTATCAAGTTCCTGGGA+TGG | 0.565443 | 1_2:-74283693 | Msa0092060:CDS |
| TCAAAGATTACCTTCCTCCA+TGG | 0.570673 | 1_2:+74284727 | None:intergenic |
| TGTAATGTCAACCATAGGCT+GGG | 0.579096 | 1_2:-74285114 | Msa0092060:CDS |
| AAAAGAAACGTACCCATCCC+AGG | 0.587454 | 1_2:+74283680 | None:intergenic |
| AAAAGCTGGTCCATGGAGGA+AGG | 0.592704 | 1_2:-74284737 | Msa0092060:intron |
| TTCCTGGTGTCATTGAATTG+TGG | 0.598293 | 1_2:-74281422 | Msa0092060:three_prime_UTR |
| TCCAATGACAACATGTAGGA+AGG | 0.604169 | 1_2:-74286517 | Msa0092060:intron |
| CCGAAAAGCGACTTAATGGA+TGG | 0.605357 | 1_2:+74282013 | None:intergenic |
| ATGATCCAATGACAACATGT+AGG | 0.614795 | 1_2:-74286521 | Msa0092060:CDS |
| TTATATGTAATGTCAACCAT+AGG | 0.616886 | 1_2:-74285119 | Msa0092060:CDS |
| TAGAGGCATCTCATAGTGAG+AGG | 0.617996 | 1_2:-74281756 | Msa0092060:CDS |
| TATCATGTATGAAATGTTGG+TGG | 0.619855 | 1_2:-74286565 | Msa0092060:exon |
| TCTGCAAGTGATCGACCTCA+AGG | 0.620013 | 1_2:-74281808 | Msa0092060:CDS |
| TGTCCAAGCCAGCTTGCTCG+AGG | 0.621031 | 1_2:+74281523 | None:intergenic |
| TGAAGCTGCATTTATACCTG+AGG | 0.622172 | 1_2:-74284923 | Msa0092060:CDS |
| GATTATCAAGTTCCTGGGAT+GGG | 0.627375 | 1_2:-74283692 | Msa0092060:intron |
| ATCCACAATTCAATGACACC+AGG | 0.629989 | 1_2:+74281420 | None:intergenic |
| AGAGACGTCAGAGTTGTCTG+AGG | 0.634824 | 1_2:-74281842 | Msa0092060:CDS |
| TGAGATGCCTCTAACTTGGG+TGG | 0.652173 | 1_2:+74281766 | None:intergenic |
| ATCATGTATGAAATGTTGGT+GGG | 0.655160 | 1_2:-74286564 | Msa0092060:CDS |
| TCTATCCAGTCAAACAGTGT+AGG | 0.659943 | 1_2:-74281696 | Msa0092060:three_prime_UTR |
| TGAAGCTGGGCTATCACCTG+AGG | 0.680916 | 1_2:-74285163 | Msa0092060:CDS |
| CGTCAAAAGCTGGTCCATGG+AGG | 0.692854 | 1_2:-74284741 | Msa0092060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAATTATTATGTTAAT+TGG | + | chr1_2:74282406-74282425 | None:intergenic | 10.0% |
| !!! | TTTTTAATCTATAACAAATA+AGG | + | chr1_2:74284400-74284419 | None:intergenic | 10.0% |
| !!! | AGATTTTCTATTTATATTTT+TGG | - | chr1_2:74284557-74284576 | Msa0092060:intron | 10.0% |
| !!! | AAGTAAAATTGTTTTATTTT+TGG | - | chr1_2:74285699-74285718 | Msa0092060:intron | 10.0% |
| !! | AATATATTTAAATTTAATGC+AGG | + | chr1_2:74286576-74286595 | None:intergenic | 10.0% |
| !!! | TTGACAAGTTTAATTTAAAA+TGG | - | chr1_2:74282266-74282285 | Msa0092060:intron | 15.0% |
| !! | AATTACTTATATGGAAATTA+TGG | - | chr1_2:74283313-74283332 | Msa0092060:intron | 15.0% |
| !! | TATAAAATAATATACATGAG+TGG | + | chr1_2:74284206-74284225 | None:intergenic | 15.0% |
| !! | TTTATGATAGAATAATGATA+TGG | - | chr1_2:74285350-74285369 | Msa0092060:intron | 15.0% |
| !! | AAATGATATAATACATTTGT+TGG | - | chr1_2:74285439-74285458 | Msa0092060:intron | 15.0% |
| !! | ATTTCAGTTAATATGTTTGT+CGG | - | chr1_2:74281489-74281508 | Msa0092060:three_prime_UTR | 20.0% |
| !! | CTATTATCATATATGTGATA+TGG | + | chr1_2:74281717-74281736 | None:intergenic | 20.0% |
| !!! | TTAAGTTTATTTTGCAAACT+CGG | + | chr1_2:74281817-74281836 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTAAAATGGACT+AGG | - | chr1_2:74282272-74282291 | Msa0092060:intron | 20.0% |
| !! | ATAATAATTTAGATCCTGTT+TGG | - | chr1_2:74282412-74282431 | Msa0092060:intron | 20.0% |
| !! | AGAGGTAAAATTAGAAAAAA+TGG | + | chr1_2:74283058-74283077 | None:intergenic | 20.0% |
| !!! | GTACTTTTGAATTACTTATA+TGG | - | chr1_2:74283304-74283323 | Msa0092060:intron | 20.0% |
| !! | GGCAATAATATTTCTTATAT+GGG | + | chr1_2:74283502-74283521 | None:intergenic | 20.0% |
| !! | CTTGATATGAATAAATGTAT+TGG | - | chr1_2:74283601-74283620 | Msa0092060:intron | 20.0% |
| !! | TAATATAGTTCACAAACAAT+TGG | + | chr1_2:74283931-74283950 | None:intergenic | 20.0% |
| !! | AAAGAATAAGAAAAAGGAAA+TGG | + | chr1_2:74284054-74284073 | None:intergenic | 20.0% |
| !! | ACAACAAAAGAATAAGAAAA+AGG | + | chr1_2:74284060-74284079 | None:intergenic | 20.0% |
| !!! | TCTAAAGACTTAAATTTTGT+TGG | - | chr1_2:74284106-74284125 | Msa0092060:intron | 20.0% |
| !! | ATGAAGTATATTAAGAGAAA+AGG | - | chr1_2:74284263-74284282 | Msa0092060:intron | 20.0% |
| !!! | TCTTTTAAGATATAGAAGAA+AGG | - | chr1_2:74284318-74284337 | Msa0092060:intron | 20.0% |
| !!! | TGTTTTATTTTTGGTTTGTT+TGG | - | chr1_2:74285708-74285727 | Msa0092060:intron | 20.0% |
| !!! | GTTTTATTTTTGGTTTGTTT+GGG | - | chr1_2:74285709-74285728 | Msa0092060:intron | 20.0% |
| !!! | TTTTATTTTTGGTTTGTTTG+GGG | - | chr1_2:74285710-74285729 | Msa0092060:intron | 20.0% |
| !! | TGATTAGATGAAAAGAATTA+TGG | + | chr1_2:74285956-74285975 | None:intergenic | 20.0% |
| !! | TAATTAATGGTTATGAGAAA+AGG | - | chr1_2:74286269-74286288 | Msa0092060:intron | 20.0% |
| ! | ATTGGATCATCAGAATAAAA+AGG | + | chr1_2:74281321-74281340 | None:intergenic | 25.0% |
| !! | ACTATTAATTATGACTTGTG+CGG | - | chr1_2:74281444-74281463 | Msa0092060:three_prime_UTR | 25.0% |
| ! | CAAGAAAACAGATTAAAGTT+TGG | + | chr1_2:74281931-74281950 | None:intergenic | 25.0% |
| !!! | ATCTGTTTTCTTGTTTAAGA+TGG | - | chr1_2:74281938-74281957 | Msa0092060:intron | 25.0% |
| !!! | TCTGTTTTCTTGTTTAAGAT+GGG | - | chr1_2:74281939-74281958 | Msa0092060:intron | 25.0% |
| ! | ATACTCAGATGAATCTTTAA+CGG | - | chr1_2:74282001-74282020 | Msa0092060:intron | 25.0% |
| ! | AGAAATGAAACTTGTACTTA+TGG | - | chr1_2:74282081-74282100 | Msa0092060:intron | 25.0% |
| !!! | TTTTCTACTTCATTTTAGCA+TGG | - | chr1_2:74282214-74282233 | Msa0092060:intron | 25.0% |
| !! | ATGTTTGTTAAAGAACACAA+TGG | - | chr1_2:74282480-74282499 | Msa0092060:intron | 25.0% |
| !! | TGAGCATGATAATTTTATCT+TGG | - | chr1_2:74282615-74282634 | Msa0092060:intron | 25.0% |
| ! | TTATATGTAATGTCAACCAT+AGG | - | chr1_2:74282733-74282752 | Msa0092060:intron | 25.0% |
| !!! | GAATTTTGAAAAGTTTGATG+AGG | - | chr1_2:74282974-74282993 | Msa0092060:intron | 25.0% |
| ! | GAAAAAATGGACAATGAAAA+TGG | + | chr1_2:74283045-74283064 | None:intergenic | 25.0% |
| ! | GTGTTTGAATAACCTATTAT+TGG | - | chr1_2:74283192-74283211 | Msa0092060:intron | 25.0% |
| ! | TCATCATATCAACCAATAAT+AGG | + | chr1_2:74283207-74283226 | None:intergenic | 25.0% |
| ! | CCGTATATTGCAAAAATTTA+GGG | + | chr1_2:74283251-74283270 | None:intergenic | 25.0% |
| !! | CCCTAAATTTTTGCAATATA+CGG | - | chr1_2:74283248-74283267 | Msa0092060:intron | 25.0% |
| ! | TCCGTATATTGCAAAAATTT+AGG | + | chr1_2:74283252-74283271 | None:intergenic | 25.0% |
| ! | GGGCAATAATATTTCTTATA+TGG | + | chr1_2:74283503-74283522 | None:intergenic | 25.0% |
| !! | ACACTGTTATTTGAATTCTT+AGG | - | chr1_2:74283666-74283685 | Msa0092060:intron | 25.0% |
| !!! | TTTTTTTTTTTCCTTCTCAC+TGG | - | chr1_2:74283962-74283981 | Msa0092060:intron | 25.0% |
| ! | ATAAGAAAAAGGAAATGGAT+GGG | + | chr1_2:74284049-74284068 | None:intergenic | 25.0% |
| ! | AATAAGAAAAAGGAAATGGA+TGG | + | chr1_2:74284050-74284069 | None:intergenic | 25.0% |
| !!! | CTTATTCTTTTGTTGTTTGA+CGG | - | chr1_2:74284064-74284083 | Msa0092060:intron | 25.0% |
| !!! | TTATTCTTTTGTTGTTTGAC+GGG | - | chr1_2:74284065-74284084 | Msa0092060:intron | 25.0% |
| !! | TTTGAAATGTACTTTCGTTT+GGG | - | chr1_2:74284240-74284259 | Msa0092060:intron | 25.0% |
| !!! | CATTTTGCTATGACTATTTT+TGG | + | chr1_2:74284674-74284693 | None:intergenic | 25.0% |
| ! | TTAATGCATTTCTTATAGCA+TGG | - | chr1_2:74284987-74285006 | Msa0092060:intron | 25.0% |
| ! | TAATGCATTTCTTATAGCAT+GGG | - | chr1_2:74284988-74285007 | Msa0092060:intron | 25.0% |
| !!! | TTATCTAAGCCTTTTAAAAC+AGG | - | chr1_2:74285053-74285072 | Msa0092060:intron | 25.0% |
| !! | CATGATTCTTTTCTTGTAAT+CGG | + | chr1_2:74285116-74285135 | None:intergenic | 25.0% |
| !! | TTACAATAAGCTCCATATTT+TGG | - | chr1_2:74285151-74285170 | Msa0092060:CDS | 25.0% |
| ! | AAAACTTTAACACGTTTCTA+GGG | + | chr1_2:74285226-74285245 | None:intergenic | 25.0% |
| ! | TAAAACTTTAACACGTTTCT+AGG | + | chr1_2:74285227-74285246 | None:intergenic | 25.0% |
| !!! | GTTTTAGTGTTTAGTCTATT+AGG | - | chr1_2:74285241-74285260 | Msa0092060:intron | 25.0% |
| ! | TTTAGTCTATTAGGTATAGA+GGG | - | chr1_2:74285250-74285269 | Msa0092060:intron | 25.0% |
| ! | TATATTCAACTTACTCGTTA+AGG | - | chr1_2:74285300-74285319 | Msa0092060:intron | 25.0% |
| ! | ATCATTTCTTTCAATGTTAG+AGG | + | chr1_2:74285426-74285445 | None:intergenic | 25.0% |
| ! | TAAGGTAAAATTTCTTCATC+TGG | + | chr1_2:74285541-74285560 | None:intergenic | 25.0% |
| !! | TTCTTTTCATCTAATCATAC+TGG | - | chr1_2:74285959-74285978 | Msa0092060:intron | 25.0% |
| ! | TCAAATATATGCATGAGTTA+TGG | + | chr1_2:74286184-74286203 | None:intergenic | 25.0% |
| !! | TTATTGGTTACGCTAATTAA+TGG | - | chr1_2:74286256-74286275 | Msa0092060:intron | 25.0% |
| TGCTATCATGTATGAAATGT+TGG | - | chr1_2:74281284-74281303 | Msa0092060:three_prime_UTR | 30.0% | |
| TATCATGTATGAAATGTTGG+TGG | - | chr1_2:74281287-74281306 | Msa0092060:three_prime_UTR | 30.0% | |
| ATCATGTATGAAATGTTGGT+GGG | - | chr1_2:74281288-74281307 | Msa0092060:three_prime_UTR | 30.0% | |
| CATTAGTTGCAAGAATCATT+TGG | + | chr1_2:74281375-74281394 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTATAACCCACTAC+AGG | - | chr1_2:74281413-74281432 | Msa0092060:three_prime_UTR | 30.0% |
| !! | TAGTAAAAGTATCCTGTAGT+GGG | + | chr1_2:74281428-74281447 | None:intergenic | 30.0% |
| !! | ATAGTAAAAGTATCCTGTAG+TGG | + | chr1_2:74281429-74281448 | None:intergenic | 30.0% |
| TCTATCATTCTACGTCAAAT+CGG | - | chr1_2:74281540-74281559 | Msa0092060:three_prime_UTR | 30.0% | |
| AAGTCCTGTTTAATATCTCT+TGG | - | chr1_2:74281603-74281622 | Msa0092060:three_prime_UTR | 30.0% | |
| TTAATATCTCTTGGCATGTT+CGG | - | chr1_2:74281612-74281631 | Msa0092060:three_prime_UTR | 30.0% | |
| CATATATGATAATAGCCATG+AGG | - | chr1_2:74281722-74281741 | Msa0092060:exon | 30.0% | |
| TGATATGGTAAAAGAAGCTT+CGG | + | chr1_2:74281875-74281894 | None:intergenic | 30.0% | |
| ! | TTGTTTAAGATGGGTATCAT+GGG | - | chr1_2:74281948-74281967 | Msa0092060:intron | 30.0% |
| AGATTCATCTGAGTATGAAT+GGG | + | chr1_2:74281997-74282016 | None:intergenic | 30.0% | |
| AAGATTCATCTGAGTATGAA+TGG | + | chr1_2:74281998-74282017 | None:intergenic | 30.0% | |
| TCTAAATGATCAACCAGTTA+AGG | + | chr1_2:74282034-74282053 | None:intergenic | 30.0% | |
| AGGAAAAGAATATACCAAAC+AGG | + | chr1_2:74282429-74282448 | None:intergenic | 30.0% | |
| CATGAAATATAGTGAACAGA+AGG | + | chr1_2:74282463-74282482 | None:intergenic | 30.0% | |
| TTAAACAGAAACCAAACAGA+CGG | - | chr1_2:74282565-74282584 | Msa0092060:intron | 30.0% | |
| !! | AAAAGGTGCTGATGAAATAA+AGG | - | chr1_2:74282764-74282783 | Msa0092060:intron | 30.0% |
| ! | GTTGAGAAGGTATAAACTAT+AGG | - | chr1_2:74283424-74283443 | Msa0092060:intron | 30.0% |
| AAATCTGCCTAAAAACAAAG+AGG | + | chr1_2:74283527-74283546 | None:intergenic | 30.0% | |
| !! | GAATAAATGTATTGGTGTTG+CGG | - | chr1_2:74283609-74283628 | Msa0092060:intron | 30.0% |
| TGAAATTATGACTCTCTACT+AGG | - | chr1_2:74283693-74283712 | Msa0092060:CDS | 30.0% | |
| GAAATTATGACTCTCTACTA+GGG | - | chr1_2:74283694-74283713 | Msa0092060:CDS | 30.0% | |
| GATCAATAATAAGTGTTCCT+AGG | + | chr1_2:74283720-74283739 | None:intergenic | 30.0% | |
| ATCACTATTCAACATGTACT+AGG | - | chr1_2:74283790-74283809 | Msa0092060:intron | 30.0% | |
| TCACTATTCAACATGTACTA+GGG | - | chr1_2:74283791-74283810 | Msa0092060:intron | 30.0% | |
| CTTGAGGAAGTTATATTTGT+TGG | + | chr1_2:74283906-74283925 | None:intergenic | 30.0% | |
| TAAGAAAAAGGAAATGGATG+GGG | + | chr1_2:74284048-74284067 | None:intergenic | 30.0% | |
| ! | CAAACGAAAGTACATTTCAA+AGG | + | chr1_2:74284241-74284260 | None:intergenic | 30.0% |
| !! | CTTTGAAATGTACTTTCGTT+TGG | - | chr1_2:74284239-74284258 | Msa0092060:intron | 30.0% |
| CACTATAGTCTCATAGAATT+AGG | + | chr1_2:74284965-74284984 | None:intergenic | 30.0% | |
| !! | CTCTCAAAACCTGTTTTAAA+AGG | + | chr1_2:74285065-74285084 | None:intergenic | 30.0% |
| GAAAAGAATCATGCAGATAA+TGG | - | chr1_2:74285123-74285142 | Msa0092060:CDS | 30.0% | |
| GTTTAGTCTATTAGGTATAG+AGG | - | chr1_2:74285249-74285268 | Msa0092060:intron | 30.0% | |
| ATACCTTACGATTACAATGT+TGG | - | chr1_2:74285388-74285407 | Msa0092060:intron | 30.0% | |
| ! | TTTTGCATATAATGGTTGTC+CGG | + | chr1_2:74285512-74285531 | None:intergenic | 30.0% |
| ! | GGACTAAGTTTTGCATATAA+TGG | + | chr1_2:74285520-74285539 | None:intergenic | 30.0% |
| AGAAGATGGAATGAATCATA+AGG | + | chr1_2:74285559-74285578 | None:intergenic | 30.0% | |
| ATTGTTCCAATGATCTATCT+TGG | + | chr1_2:74285594-74285613 | None:intergenic | 30.0% | |
| !!! | ATGCTGTTACATGTCATTTT+AGG | - | chr1_2:74285638-74285657 | Msa0092060:intron | 30.0% |
| ! | TGAGAGTCACATTTAGAATA+CGG | + | chr1_2:74286213-74286232 | None:intergenic | 30.0% |
| !! | TCCACATTTGGATTTGTTAT+TGG | - | chr1_2:74286240-74286259 | Msa0092060:intron | 30.0% |
| ACCAATAACAAATCCAAATG+TGG | + | chr1_2:74286244-74286263 | None:intergenic | 30.0% | |
| GGATCATCAGAATAAAAAGG+TGG | + | chr1_2:74281318-74281337 | None:intergenic | 35.0% | |
| ATGATCCAATGACAACATGT+AGG | - | chr1_2:74281331-74281350 | Msa0092060:three_prime_UTR | 35.0% | |
| CATGCCAAGAGATATTAAAC+AGG | + | chr1_2:74281610-74281629 | None:intergenic | 35.0% | |
| ATGTATGTCTTGTCCAAAGA+AGG | + | chr1_2:74281646-74281665 | None:intergenic | 35.0% | |
| ACAAGACATACATGATACCA+GGG | - | chr1_2:74281653-74281672 | Msa0092060:three_prime_UTR | 35.0% | |
| TTGTACATACTGCAATGTAG+TGG | + | chr1_2:74281681-74281700 | None:intergenic | 35.0% | |
| CCAAAGGAATTAATGACTAG+AGG | + | chr1_2:74281761-74281780 | None:intergenic | 35.0% | |
| CCTCTAGTCATTAATTCCTT+TGG | - | chr1_2:74281758-74281777 | Msa0092060:CDS | 35.0% | |
| CCAGAGAAATAAAGGACTAT+AGG | + | chr1_2:74281794-74281813 | None:intergenic | 35.0% | |
| ! | CCTATAGTCCTTTATTTCTC+TGG | - | chr1_2:74281791-74281810 | Msa0092060:CDS | 35.0% |
| ! | CTTGTTTAAGATGGGTATCA+TGG | - | chr1_2:74281947-74281966 | Msa0092060:intron | 35.0% |
| !! | TATCATGGGTTTGATAGTGT+AGG | - | chr1_2:74281962-74281981 | Msa0092060:intron | 35.0% |
| !! | ATCATGGGTTTGATAGTGTA+GGG | - | chr1_2:74281963-74281982 | Msa0092060:intron | 35.0% |
| GGACTTCAGTATCAAAAGTA+AGG | - | chr1_2:74282102-74282121 | Msa0092060:intron | 35.0% | |
| AGTATCAAAAGTAAGGATGC+TGG | - | chr1_2:74282109-74282128 | Msa0092060:intron | 35.0% | |
| ! | TTAAGTAGCTAGTTTCAGTC+TGG | + | chr1_2:74282156-74282175 | None:intergenic | 35.0% |
| CGATCCTACCTATATTGTAA+TGG | - | chr1_2:74282339-74282358 | Msa0092060:intron | 35.0% | |
| ATCGCCATTACAATATAGGT+AGG | + | chr1_2:74282346-74282365 | None:intergenic | 35.0% | |
| ! | AAGCATCGCCATTACAATAT+AGG | + | chr1_2:74282350-74282369 | None:intergenic | 35.0% |
| AACAGAAGGTGGCATAAAAT+AGG | + | chr1_2:74282449-74282468 | None:intergenic | 35.0% | |
| GAAATATAGTGAACAGAAGG+TGG | + | chr1_2:74282460-74282479 | None:intergenic | 35.0% | |
| AAAGAAAAACTCCGTCTGTT+TGG | + | chr1_2:74282579-74282598 | None:intergenic | 35.0% | |
| CTTTATTGCAGATAGTGAAC+TGG | - | chr1_2:74282643-74282662 | Msa0092060:intron | 35.0% | |
| TTGAAATTTCCTGATGAAGC+TGG | - | chr1_2:74282675-74282694 | Msa0092060:intron | 35.0% | |
| TGAAATTTCCTGATGAAGCT+GGG | - | chr1_2:74282676-74282695 | Msa0092060:intron | 35.0% | |
| !! | GTTCTTCAAAGGTGTTGAAT+GGG | - | chr1_2:74282890-74282909 | Msa0092060:intron | 35.0% |
| TCTAATTCATCATTGACCTC+AGG | + | chr1_2:74282948-74282967 | None:intergenic | 35.0% | |
| TTCACCTCATAGCAACTAAA+AGG | + | chr1_2:74283398-74283417 | None:intergenic | 35.0% | |
| ! | AGAAGGTATAAACTATAGGC+AGG | - | chr1_2:74283428-74283447 | Msa0092060:intron | 35.0% |
| ! | GAAGGTATAAACTATAGGCA+GGG | - | chr1_2:74283429-74283448 | Msa0092060:intron | 35.0% |
| GCAAGACATTTCCTACTATA+CGG | + | chr1_2:74283455-74283474 | None:intergenic | 35.0% | |
| !! | GTTTAACTTCCTTTTAGCAC+TGG | - | chr1_2:74283880-74283899 | Msa0092060:intron | 35.0% |
| TCACAAACAATTGGAACTTG+AGG | + | chr1_2:74283922-74283941 | None:intergenic | 35.0% | |
| AAGAAAAAGGAAATGGATGG+GGG | + | chr1_2:74284047-74284066 | None:intergenic | 35.0% | |
| TCAACGATTATCAAGTTCCT+GGG | - | chr1_2:74284155-74284174 | Msa0092060:intron | 35.0% | |
| AAAAAAAACCTAACCCGAAC+TGG | - | chr1_2:74284852-74284871 | Msa0092060:intron | 35.0% | |
| CAATAATCCCAGTCAATGTT+TGG | + | chr1_2:74284901-74284920 | None:intergenic | 35.0% | |
| ! | AACATTGACTGGGATTATTG+AGG | - | chr1_2:74284901-74284920 | Msa0092060:CDS | 35.0% |
| !! | TATTGAGGTTGGTTTACGTT+CGG | - | chr1_2:74284916-74284935 | Msa0092060:CDS | 35.0% |
| CAAGTATCCCATATGCAATA+TGG | + | chr1_2:74285014-74285033 | None:intergenic | 35.0% | |
| CATATTGCATATGGGATACT+TGG | - | chr1_2:74285012-74285031 | Msa0092060:intron | 35.0% | |
| !!! | AAACAGGTTTTGAGAGAGAA+AGG | - | chr1_2:74285069-74285088 | Msa0092060:intron | 35.0% |
| GATGTCGAGTTTCCAAAATA+TGG | + | chr1_2:74285166-74285185 | None:intergenic | 35.0% | |
| ACGAGACTGATCATAAAGTA+TGG | - | chr1_2:74285195-74285214 | Msa0092060:CDS | 35.0% | |
| CATCCAACATTGTAATCGTA+AGG | + | chr1_2:74285394-74285413 | None:intergenic | 35.0% | |
| AGTTAATCTACATGACTACC+CGG | - | chr1_2:74285490-74285509 | Msa0092060:intron | 35.0% | |
| TTTGCATATAATGGTTGTCC+GGG | + | chr1_2:74285511-74285530 | None:intergenic | 35.0% | |
| TTCATTCCATCTTCTGTTGT+TGG | - | chr1_2:74285564-74285583 | Msa0092060:intron | 35.0% | |
| !!! | TGTTACATGTCATTTTAGGC+AGG | - | chr1_2:74285642-74285661 | Msa0092060:intron | 35.0% |
| !!! | GTTACATGTCATTTTAGGCA+GGG | - | chr1_2:74285643-74285662 | Msa0092060:intron | 35.0% |
| TTGTGGAAGATAAATTGGCA+GGG | - | chr1_2:74285666-74285685 | Msa0092060:intron | 35.0% | |
| AATGGATGGTCTCTTTGATT+TGG | + | chr1_2:74285828-74285847 | None:intergenic | 35.0% | |
| AGATTCAAAAAGCTTCCTTG+AGG | + | chr1_2:74286062-74286081 | None:intergenic | 35.0% | |
| GATCATGATATTGCGTTGTT+AGG | + | chr1_2:74286138-74286157 | None:intergenic | 35.0% | |
| ! | GAGAGTCACATTTAGAATAC+GGG | + | chr1_2:74286212-74286231 | None:intergenic | 35.0% |
| TCTCAATGCAATTCCACATT+TGG | - | chr1_2:74286228-74286247 | Msa0092060:intron | 35.0% | |
| TCCAATGACAACATGTAGGA+AGG | - | chr1_2:74281335-74281354 | Msa0092060:three_prime_UTR | 40.0% | |
| ACCTTCCTACATGTTGTCAT+TGG | + | chr1_2:74281339-74281358 | None:intergenic | 40.0% | |
| ATCATTCTACGTCAAATCGG+TGG | - | chr1_2:74281543-74281562 | Msa0092060:three_prime_UTR | 40.0% | |
| GACAAGACATACATGATACC+AGG | - | chr1_2:74281652-74281671 | Msa0092060:three_prime_UTR | 40.0% | |
| TATAGGAAGAGTTCTGCCAA+AGG | + | chr1_2:74281777-74281796 | None:intergenic | 40.0% | |
| AAACTCGGCCAGAGAAATAA+AGG | + | chr1_2:74281802-74281821 | None:intergenic | 40.0% | |
| TATGGTAAAAGAAGCTTCGG+AGG | + | chr1_2:74281872-74281891 | None:intergenic | 40.0% | |
| CTCACATGAAATGTCTGAAG+GGG | + | chr1_2:74281905-74281924 | None:intergenic | 40.0% | |
| GCTCACATGAAATGTCTGAA+GGG | + | chr1_2:74281906-74281925 | None:intergenic | 40.0% | |
| AGCTCACATGAAATGTCTGA+AGG | + | chr1_2:74281907-74281926 | None:intergenic | 40.0% | |
| !! | TCATGGGTTTGATAGTGTAG+GGG | - | chr1_2:74281964-74281983 | Msa0092060:intron | 40.0% |
| !! | CTAGGCTTCTCTAAGATGTT+AGG | - | chr1_2:74282290-74282309 | Msa0092060:intron | 40.0% |
| ! | AGGATCGATTCTGCACATTA+TGG | + | chr1_2:74282326-74282345 | None:intergenic | 40.0% |
| CTGATAAGATCTTTAGCCTC+AGG | + | chr1_2:74282708-74282727 | None:intergenic | 40.0% | |
| ATGTAATGTCAACCATAGGC+TGG | - | chr1_2:74282737-74282756 | Msa0092060:intron | 40.0% | |
| TGTAATGTCAACCATAGGCT+GGG | - | chr1_2:74282738-74282757 | Msa0092060:intron | 40.0% | |
| TTTATGTTGCATTCCGCTTC+AGG | - | chr1_2:74282860-74282879 | Msa0092060:intron | 40.0% | |
| !! | GGTTCTTCAAAGGTGTTGAA+TGG | - | chr1_2:74282889-74282908 | Msa0092060:intron | 40.0% |
| TGAAGCTGCATTTATACCTG+AGG | - | chr1_2:74282929-74282948 | Msa0092060:intron | 40.0% | |
| TCAAAGATTACCTTCCTCCA+TGG | + | chr1_2:74283128-74283147 | None:intergenic | 40.0% | |
| TGGTGAAAATTTCCAGCAGA+GGG | + | chr1_2:74283155-74283174 | None:intergenic | 40.0% | |
| TTGGTGAAAATTTCCAGCAG+AGG | + | chr1_2:74283156-74283175 | None:intergenic | 40.0% | |
| CACCAAGTTATCTGTTGAGT+TGG | - | chr1_2:74283170-74283189 | Msa0092060:intron | 40.0% | |
| CACCAACTCAACAGATAACT+TGG | + | chr1_2:74283175-74283194 | None:intergenic | 40.0% | |
| GTTGCTATGAGGTGAATTGA+TGG | - | chr1_2:74283402-74283421 | Msa0092060:intron | 40.0% | |
| ! | AGGTGAATTGATGGTTGAGA+AGG | - | chr1_2:74283411-74283430 | Msa0092060:intron | 40.0% |
| TGTCTTGCTAATTCTCGAAC+TGG | - | chr1_2:74283467-74283486 | Msa0092060:intron | 40.0% | |
| !!! | TTGCCCTCCTCTTTGTTTTT+AGG | - | chr1_2:74283517-74283536 | Msa0092060:intron | 40.0% |
| CTGCCTAAAAACAAAGAGGA+GGG | + | chr1_2:74283523-74283542 | None:intergenic | 40.0% | |
| TCTGCCTAAAAACAAAGAGG+AGG | + | chr1_2:74283524-74283543 | None:intergenic | 40.0% | |
| !! | AATGTATTGGTGTTGCGGTA+CGG | - | chr1_2:74283614-74283633 | Msa0092060:intron | 40.0% |
| TAGGGTTGTATGTATTTGCG+CGG | - | chr1_2:74283809-74283828 | Msa0092060:intron | 40.0% | |
| ! | ATTTGTTGGCCAGTGCTAAA+AGG | + | chr1_2:74283892-74283911 | None:intergenic | 40.0% |
| TATTCTGTAAGCCAGTGAGA+AGG | + | chr1_2:74283976-74283995 | None:intergenic | 40.0% | |
| GTCAACGATTATCAAGTTCC+TGG | - | chr1_2:74284154-74284173 | Msa0092060:intron | 40.0% | |
| GATTATCAAGTTCCTGGGAT+GGG | - | chr1_2:74284160-74284179 | Msa0092060:intron | 40.0% | |
| TCACTGATATAGAGCCAGTT+CGG | + | chr1_2:74284869-74284888 | None:intergenic | 40.0% | |
| TTGACTGGGATTATTGAGGT+TGG | - | chr1_2:74284905-74284924 | Msa0092060:CDS | 40.0% | |
| !! | ATTGAGGTTGGTTTACGTTC+GGG | - | chr1_2:74284917-74284936 | Msa0092060:CDS | 40.0% |
| !!! | AGGTTTTGAGAGAGAAAGGA+TGG | - | chr1_2:74285073-74285092 | Msa0092060:intron | 40.0% |
| !!! | GGTTTTGAGAGAGAAAGGAT+GGG | - | chr1_2:74285074-74285093 | Msa0092060:intron | 40.0% |
| ! | ACTTTAACACGTTTCTAGGG+TGG | + | chr1_2:74285223-74285242 | None:intergenic | 40.0% |
| TTAGGTATAGAGGGAGAAAG+AGG | - | chr1_2:74285259-74285278 | Msa0092060:intron | 40.0% | |
| TTCCATCTTCTGTTGTTGGA+AGG | - | chr1_2:74285568-74285587 | Msa0092060:intron | 40.0% | |
| !! | ACAGCATTGATGTGAAACTG+TGG | + | chr1_2:74285625-74285644 | None:intergenic | 40.0% |
| CAGGGTTGTGGAAGATAAAT+TGG | - | chr1_2:74285661-74285680 | Msa0092060:intron | 40.0% | |
| GTTGTGGAAGATAAATTGGC+AGG | - | chr1_2:74285665-74285684 | Msa0092060:intron | 40.0% | |
| !! | GATGGTCTCTTTGATTTGGA+GGG | + | chr1_2:74285824-74285843 | None:intergenic | 40.0% |
| !!! | CCATCCATTAAGTCGCTTTT+CGG | - | chr1_2:74285839-74285858 | Msa0092060:intron | 40.0% |
| CTATGAGATGCCTCTAACTT+GGG | + | chr1_2:74286092-74286111 | None:intergenic | 40.0% | |
| ACTATGAGATGCCTCTAACT+TGG | + | chr1_2:74286093-74286112 | None:intergenic | 40.0% | |
| TCTATCCAGTCAAACAGTGT+AGG | - | chr1_2:74286156-74286175 | Msa0092060:intron | 40.0% | |
| CTACACTGTAAACAGATTCC+TGG | - | chr1_2:74286414-74286433 | Msa0092060:intron | 40.0% | |
| !! | TTCCTGGTGTCATTGAATTG+TGG | - | chr1_2:74286430-74286449 | Msa0092060:intron | 40.0% |
| ATCCACAATTCAATGACACC+AGG | + | chr1_2:74286435-74286454 | None:intergenic | 40.0% | |
| ! | AAAGCATTTGTCTGTAACGC+TGG | - | chr1_2:74286514-74286533 | Msa0092060:intron | 40.0% |
| ! | TTCGGTGATGGTACCTTCTT+TGG | - | chr1_2:74281630-74281649 | Msa0092060:three_prime_UTR | 45.0% |
| TGAAGGGGAAACAGGTGATA+TGG | + | chr1_2:74281890-74281909 | None:intergenic | 45.0% | |
| GAAATGTCTGAAGGGGAAAC+AGG | + | chr1_2:74281898-74281917 | None:intergenic | 45.0% | |
| ! | TAACGGTCTGTAGCCTTAAC+TGG | - | chr1_2:74282018-74282037 | Msa0092060:CDS | 45.0% |
| ! | ACTTGCTTACTCTAGAGAGG+AGG | + | chr1_2:74282383-74282402 | None:intergenic | 45.0% |
| ! | TGGACTTGCTTACTCTAGAG+AGG | + | chr1_2:74282386-74282405 | None:intergenic | 45.0% |
| AACCATAGGCTGGGATCAAA+AGG | - | chr1_2:74282747-74282766 | Msa0092060:intron | 45.0% | |
| ! | ATTTTACCTCTTGCACCTGC+AGG | - | chr1_2:74283067-74283086 | Msa0092060:intron | 45.0% |
| ATCTTTGATGTTCCCTCTGC+TGG | - | chr1_2:74283140-74283159 | Msa0092060:intron | 45.0% | |
| !! | GCTGCCTTTTAGTTGCTATG+AGG | - | chr1_2:74283391-74283410 | Msa0092060:intron | 45.0% |
| TGCTAATTCTCGAACTGGCT+CGG | - | chr1_2:74283472-74283491 | Msa0092060:intron | 45.0% | |
| AAAAAGGAAATGGATGGGGG+TGG | + | chr1_2:74284044-74284063 | None:intergenic | 45.0% | |
| CGATTATCAAGTTCCTGGGA+TGG | - | chr1_2:74284159-74284178 | Msa0092060:intron | 45.0% | |
| AAAAGAAACGTACCCATCCC+AGG | + | chr1_2:74284175-74284194 | None:intergenic | 45.0% | |
| ! | ATATAGAGCCAGTTCGGGTT+AGG | + | chr1_2:74284863-74284882 | None:intergenic | 45.0% |
| CACTGATATAGAGCCAGTTC+GGG | + | chr1_2:74284868-74284887 | None:intergenic | 45.0% | |
| TTTACGTTCGGGAATGCATC+CGG | - | chr1_2:74284928-74284947 | Msa0092060:CDS | 45.0% | |
| AGTCTCATAGAATTAGGCCC+TGG | + | chr1_2:74284959-74284978 | None:intergenic | 45.0% | |
| AGCATGGGCCATATTGCATA+TGG | - | chr1_2:74285003-74285022 | Msa0092060:intron | 45.0% | |
| GCATGGGCCATATTGCATAT+GGG | - | chr1_2:74285004-74285023 | Msa0092060:intron | 45.0% | |
| GGAAGGCCAAGATAGATCAT+TGG | - | chr1_2:74285585-74285604 | Msa0092060:intron | 45.0% | |
| !!! | TGTCATTTTAGGCAGGGTTG+TGG | - | chr1_2:74285649-74285668 | Msa0092060:intron | 45.0% |
| !! | GGATGGTCTCTTTGATTTGG+AGG | + | chr1_2:74285825-74285844 | None:intergenic | 45.0% |
| CCGAAAAGCGACTTAATGGA+TGG | + | chr1_2:74285842-74285861 | None:intergenic | 45.0% | |
| CCTACCGAAAAGCGACTTAA+TGG | + | chr1_2:74285846-74285865 | None:intergenic | 45.0% | |
| !!! | CCATTAAGTCGCTTTTCGGT+AGG | - | chr1_2:74285843-74285862 | Msa0092060:intron | 45.0% |
| GGTAGGCTCTTACATCTTTG+TGG | - | chr1_2:74285860-74285879 | Msa0092060:intron | 45.0% | |
| ! | TCTTTTGCCACCCAAGTTAG+AGG | - | chr1_2:74286079-74286098 | Msa0092060:intron | 45.0% |
| !! | TAGAGGCATCTCATAGTGAG+AGG | - | chr1_2:74286096-74286115 | Msa0092060:intron | 45.0% |
| TGGTACCTACACTGTTTGAC+TGG | + | chr1_2:74286164-74286183 | None:intergenic | 45.0% | |
| GTAATTAACCTCGAGCAAGC+TGG | - | chr1_2:74286321-74286340 | Msa0092060:intron | 45.0% | |
| !! | TGGCTTGGACAAGTCTTTTC+TGG | - | chr1_2:74286341-74286360 | Msa0092060:intron | 45.0% |
| TCTGTAACGCTGGAGTCTAA+TGG | - | chr1_2:74286524-74286543 | Msa0092060:CDS | 45.0% | |
| !!! | TATATTTTATATTTCAATAT+TGG | - | chr1_2:74282829-74282848 | Msa0092060:intron | 5.0% |
| ! | TCTCTTGGCATGTTCGGTGA+TGG | - | chr1_2:74281618-74281637 | Msa0092060:three_prime_UTR | 50.0% |
| !! | ACTGCAATGTAGTGGATCCC+TGG | + | chr1_2:74281673-74281692 | None:intergenic | 50.0% |
| GGACAGTACTTTCAGCCTCA+TGG | + | chr1_2:74281740-74281759 | None:intergenic | 50.0% | |
| AAAGAAGCTTCGGAGGCAAG+AGG | + | chr1_2:74281865-74281884 | None:intergenic | 50.0% | |
| ! | CACCTTTTGATCCCAGCCTA+TGG | + | chr1_2:74282752-74282771 | None:intergenic | 50.0% |
| AAGAACCGATGAGCCTGAAG+CGG | + | chr1_2:74282876-74282895 | None:intergenic | 50.0% | |
| !! | CAGGCTCATCGGTTCTTCAA+AGG | - | chr1_2:74282879-74282898 | Msa0092060:intron | 50.0% |
| ! | CTTTTGACGACGGTCGAGTT+TGG | + | chr1_2:74283100-74283119 | None:intergenic | 50.0% |
| ! | CATGGACCAGCTTTTGACGA+CGG | + | chr1_2:74283110-74283129 | None:intergenic | 50.0% |
| AAAAGCTGGTCCATGGAGGA+AGG | - | chr1_2:74283115-74283134 | Msa0092060:intron | 50.0% | |
| CTCGTGGACATGCAAGTGAA+AGG | + | chr1_2:74283368-74283387 | None:intergenic | 50.0% | |
| TCACTTGCATGTCCACGAGT+AGG | - | chr1_2:74283369-74283388 | Msa0092060:intron | 50.0% | |
| ACTAAAAGGCAGCCTACTCG+TGG | + | chr1_2:74283384-74283403 | None:intergenic | 50.0% | |
| TATAGGCAGGGCCGTATAGT+AGG | - | chr1_2:74283441-74283460 | Msa0092060:intron | 50.0% | |
| ! | GCTAATTCTCGAACTGGCTC+GGG | - | chr1_2:74283473-74283492 | Msa0092060:intron | 50.0% |
| ATGACTCTCTACTAGGGCCT+AGG | - | chr1_2:74283700-74283719 | Msa0092060:CDS | 50.0% | |
| TGTCGCGACCAAACATTGAC+TGG | - | chr1_2:74284890-74284909 | Msa0092060:CDS | 50.0% | |
| ! | GTCGCGACCAAACATTGACT+GGG | - | chr1_2:74284891-74284910 | Msa0092060:CDS | 50.0% |
| TTACGTTCGGGAATGCATCC+GGG | - | chr1_2:74284929-74284948 | Msa0092060:CDS | 50.0% | |
| GGCCTTCCAACAACAGAAGA+TGG | + | chr1_2:74285573-74285592 | None:intergenic | 50.0% | |
| TCAGCTGCAACGCAAAAGGA+TGG | + | chr1_2:74285788-74285807 | None:intergenic | 50.0% | |
| CAACTCTGACGTCTCTGACT+CGG | + | chr1_2:74286006-74286025 | None:intergenic | 50.0% | |
| AGAGACGTCAGAGTTGTCTG+AGG | - | chr1_2:74286010-74286029 | Msa0092060:intron | 50.0% | |
| TCTGCAAGTGATCGACCTCA+AGG | - | chr1_2:74286044-74286063 | Msa0092060:intron | 50.0% | |
| TGAGATGCCTCTAACTTGGG+TGG | + | chr1_2:74286089-74286108 | None:intergenic | 50.0% | |
| GGTGATAGCCCAGCTTCATC+AGG | + | chr1_2:74282687-74282706 | None:intergenic | 55.0% | |
| TGAAGCTGGGCTATCACCTG+AGG | - | chr1_2:74282689-74282708 | Msa0092060:intron | 55.0% | |
| GCATTCCGCTTCAGGCTCAT+CGG | - | chr1_2:74282868-74282887 | Msa0092060:intron | 55.0% | |
| ACTCGACCGTCGTCAAAAGC+TGG | - | chr1_2:74283101-74283120 | Msa0092060:intron | 55.0% | |
| CGTCGTCAAAAGCTGGTCCA+TGG | - | chr1_2:74283108-74283127 | Msa0092060:intron | 55.0% | |
| CGTCAAAAGCTGGTCCATGG+AGG | - | chr1_2:74283111-74283130 | Msa0092060:intron | 55.0% | |
| TACGTTCGGGAATGCATCCG+GGG | - | chr1_2:74284930-74284949 | Msa0092060:CDS | 55.0% | |
| GAATGCATCCGGGGTAACCA+GGG | - | chr1_2:74284939-74284958 | Msa0092060:CDS | 55.0% | |
| GAATTAGGCCCTGGTTACCC+CGG | + | chr1_2:74284950-74284969 | None:intergenic | 55.0% | |
| CAGCTCAGCTGCAACGCAAA+AGG | + | chr1_2:74285792-74285811 | None:intergenic | 55.0% | |
| TAACCTCGAGCAAGCTGGCT+TGG | - | chr1_2:74286326-74286345 | Msa0092060:intron | 55.0% | |
| TGTCAGCCTGCAGGTGCAAG+AGG | + | chr1_2:74283076-74283095 | None:intergenic | 60.0% | |
| GAGTTTGGCTGTCAGCCTGC+AGG | + | chr1_2:74283085-74283104 | None:intergenic | 60.0% | |
| GGAATGCATCCGGGGTAACC+AGG | - | chr1_2:74284938-74284957 | Msa0092060:CDS | 60.0% | |
| ! | TGTCCAAGCCAGCTTGCTCG+AGG | + | chr1_2:74286332-74286351 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 74281272 | 74286602 | 74281272 | ID=Msa0092060;Name=Msa0092060 |
| chr1_2 | mRNA | 74281272 | 74286602 | 74281272 | ID=Msa0092060-mRNA-1;Parent=Msa0092060;Name=Msa0092060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=19|0.5|0.55|0.66|0.87|1|9|463|218 |
| chr1_2 | exon | 74281272 | 74281874 | 74281272 | ID=Msa0092060-mRNA-1:exon:26217;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74282014 | 74282070 | 74282014 | ID=Msa0092060-mRNA-1:exon:26216;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74283693 | 74283777 | 74283693 | ID=Msa0092060-mRNA-1:exon:26215;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74284738 | 74284785 | 74284738 | ID=Msa0092060-mRNA-1:exon:26214;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74284879 | 74284992 | 74284879 | ID=Msa0092060-mRNA-1:exon:26213;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74285089 | 74285220 | 74285089 | ID=Msa0092060-mRNA-1:exon:26212;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74285756 | 74285763 | 74285756 | ID=Msa0092060-mRNA-1:exon:26211;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74286372 | 74286378 | 74286372 | ID=Msa0092060-mRNA-1:exon:26210;Parent=Msa0092060-mRNA-1 |
| chr1_2 | exon | 74286518 | 74286602 | 74286518 | ID=Msa0092060-mRNA-1:exon:26209;Parent=Msa0092060-mRNA-1 |
| chr1_2 | five_prime_UTR | 74286584 | 74286602 | 74286584 | ID=Msa0092060-mRNA-1:five_prime_utr;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74286518 | 74286583 | 74286518 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74286372 | 74286378 | 74286372 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74285756 | 74285763 | 74285756 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74285089 | 74285220 | 74285089 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74284879 | 74284992 | 74284879 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74284738 | 74284785 | 74284738 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74283693 | 74283777 | 74283693 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74282014 | 74282070 | 74282014 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | CDS | 74281735 | 74281874 | 74281735 | ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1 |
| chr1_2 | three_prime_UTR | 74281272 | 74281734 | 74281272 | ID=Msa0092060-mRNA-1:three_prime_utr;Parent=Msa0092060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
