AlfalfaGEDB | Msa0092060

M. sativa cultivar zhongmu-4 / Msa0092060

KEGG: K08790|K20069
GO: -
PFAM: PF00433.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092060	XP_024635341.1	96.330	218	3	1	1	218	348	560	4.80e-149	436

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092060	sp\|Q6TGC6\|CBK1_PNECA	42.568	148	77	3	1	146	361	502	2.37e-29	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092060	A0A072VLK6	96.330	218	3	1	1	218	348	560	2.29e-149	436

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092060	Msa0122810	0.855429	6.344962e-62	-8.615850e-47
Msa0092060	Msa1041730	0.809735	1.633573e-50	-8.615850e-47
Msa0092060	Msa1167220	0.813769	2.164251e-51	-8.615850e-47
Msa0092060	Msa1415940	0.819230	1.295219e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092060	MtrunA17_Chr1g0183651	96.330	218	3	1	1	218	348	560	4.42e-153	436
Msa0092060	MtrunA17_Chr1g0187581	78.771	179	33	1	1	179	346	519	2.74e-101	303
Msa0092060	MtrunA17_Chr7g0261491	63.090	233	41	4	1	193	348	575	5.54e-94	285
Msa0092060	MtrunA17_Chr1g0167351	71.154	208	45	4	1	207	340	533	1.56e-93	283
Msa0092060	MtrunA17_Chr1g0167311	69.318	176	47	3	1	176	345	513	1.71e-82	254
Msa0092060	MtrunA17_Chr3g0135951	65.541	148	45	2	1	147	331	473	2.29e-64	207
Msa0092060	MtrunA17_Chr2g0299781	59.064	171	59	3	1	170	350	510	1.19e-58	192
Msa0092060	MtrunA17_Chr1g0153321	54.651	172	70	3	1	172	338	501	1.90e-57	189
Msa0092060	MtrunA17_Chr6g0478601	43.810	105	52	4	1	104	330	428	3.23e-18	82.4
Msa0092060	MtrunA17_Chr4g0018201	42.553	94	47	4	1	93	977	1064	8.64e-14	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092060	AT4G14350.2	68.932	206	49	2	1	206	348	538	1.57e-99	299
Msa0092060	AT4G14350.1	68.932	206	49	2	1	206	348	538	1.57e-99	299
Msa0092060	AT4G14350.4	68.932	206	49	2	1	206	348	538	1.57e-99	299
Msa0092060	AT4G14350.3	68.932	206	49	2	1	206	348	538	1.71e-99	299
Msa0092060	AT3G23310.1	66.825	211	55	2	1	211	351	546	1.54e-96	292
Msa0092060	AT2G20470.2	67.907	215	55	3	1	207	351	559	3.11e-96	291
Msa0092060	AT2G20470.1	67.907	215	55	3	1	207	351	559	3.11e-96	291
Msa0092060	AT2G20470.3	74.857	175	38	2	1	175	351	519	9.71e-93	281
Msa0092060	AT1G03920.2	75.740	169	36	1	1	169	252	415	2.66e-86	263
Msa0092060	AT1G03920.1	75.740	169	36	1	1	169	365	528	2.04e-85	263

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Find 67 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACGTACCCATCCC+AGG	0.587454	1_2:+74283680	None:intergenic
AAAAGCTGGTCCATGGAGGA+AGG	0.592704	1_2:-74284737	Msa0092060:intron
AAAAGGTGCTGATGAAATAA+AGG	0.383499	1_2:-74285088	Msa0092060:intron
AAAGCATTTGTCTGTAACGC+TGG	0.509045	1_2:-74281338	Msa0092060:three_prime_UTR
AACCATAGGCTGGGATCAAA+AGG	0.468193	1_2:-74285105	Msa0092060:CDS
AATATATTTAAATTTAATGC+AGG	0.461174	1_2:+74281279	None:intergenic
AATGGATGGTCTCTTTGATT+TGG	0.326209	1_2:+74282027	None:intergenic
ACCAATAACAAATCCAAATG+TGG	0.556434	1_2:+74281611	None:intergenic
ACCTTCCTACATGTTGTCAT+TGG	0.369230	1_2:+74286516	None:intergenic
ACTATGAGATGCCTCTAACT+TGG	0.425956	1_2:+74281762	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTATCATGTATGAAATGT+TGG	-	chr1_2:74281284-74281303	Msa0092060:three_prime_UTR	30.0%
TATCATGTATGAAATGTTGG+TGG	-	chr1_2:74281287-74281306	Msa0092060:three_prime_UTR	30.0%
ATCATGTATGAAATGTTGGT+GGG	-	chr1_2:74281288-74281307	Msa0092060:three_prime_UTR	30.0%
CATTAGTTGCAAGAATCATT+TGG	+	chr1_2:74281375-74281394	None:intergenic	30.0%
TCTATCATTCTACGTCAAAT+CGG	-	chr1_2:74281540-74281559	Msa0092060:three_prime_UTR	30.0%
AAGTCCTGTTTAATATCTCT+TGG	-	chr1_2:74281603-74281622	Msa0092060:three_prime_UTR	30.0%
TTAATATCTCTTGGCATGTT+CGG	-	chr1_2:74281612-74281631	Msa0092060:three_prime_UTR	30.0%
CATATATGATAATAGCCATG+AGG	-	chr1_2:74281722-74281741	Msa0092060:exon	30.0%
TGATATGGTAAAAGAAGCTT+CGG	+	chr1_2:74281875-74281894	None:intergenic	30.0%
AGATTCATCTGAGTATGAAT+GGG	+	chr1_2:74281997-74282016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	74281272	74286602	74281272	ID=Msa0092060;Name=Msa0092060
chr1_2	mRNA	74281272	74286602	74281272	ID=Msa0092060-mRNA-1;Parent=Msa0092060;Name=Msa0092060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=19\|0.5\|0.55\|0.66\|0.87\|1\|9\|463\|218
chr1_2	exon	74281272	74281874	74281272	ID=Msa0092060-mRNA-1:exon:26217;Parent=Msa0092060-mRNA-1
chr1_2	exon	74282014	74282070	74282014	ID=Msa0092060-mRNA-1:exon:26216;Parent=Msa0092060-mRNA-1
chr1_2	exon	74283693	74283777	74283693	ID=Msa0092060-mRNA-1:exon:26215;Parent=Msa0092060-mRNA-1
chr1_2	exon	74284738	74284785	74284738	ID=Msa0092060-mRNA-1:exon:26214;Parent=Msa0092060-mRNA-1
chr1_2	exon	74284879	74284992	74284879	ID=Msa0092060-mRNA-1:exon:26213;Parent=Msa0092060-mRNA-1
chr1_2	exon	74285089	74285220	74285089	ID=Msa0092060-mRNA-1:exon:26212;Parent=Msa0092060-mRNA-1
chr1_2	exon	74285756	74285763	74285756	ID=Msa0092060-mRNA-1:exon:26211;Parent=Msa0092060-mRNA-1
chr1_2	exon	74286372	74286378	74286372	ID=Msa0092060-mRNA-1:exon:26210;Parent=Msa0092060-mRNA-1
chr1_2	exon	74286518	74286602	74286518	ID=Msa0092060-mRNA-1:exon:26209;Parent=Msa0092060-mRNA-1
chr1_2	five_prime_UTR	74286584	74286602	74286584	ID=Msa0092060-mRNA-1:five_prime_utr;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74286518	74286583	74286518	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74286372	74286378	74286372	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74285756	74285763	74285756	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74285089	74285220	74285089	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74284879	74284992	74284879	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74284738	74284785	74284738	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74283693	74283777	74283693	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74282014	74282070	74282014	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	CDS	74281735	74281874	74281735	ID=Msa0092060-mRNA-1:cds;Parent=Msa0092060-mRNA-1
chr1_2	three_prime_UTR	74281272	74281734	74281272	ID=Msa0092060-mRNA-1:three_prime_utr;Parent=Msa0092060-mRNA-1

Gene Sequence

>Msa0092060

ATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGACAACATGTAGGAAGTTAATATTATCAAAAATAGTGAACTGGAAATCTCACTTGAAATTTCCTGATGAAGCTGGGCTATCACCTGAGGCTAAAGATCTTATCAGTAGACTTATATGTAATGTCAACCATAGGCTGGGATCAAAAGGTGCTGATGAAATAAAGGCTCATCGGTTCTTCAAAGGTGTTGAATGGGATAAACTATATCAAATTGAAGCTGCATTTATACCTGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAGTTTGATGAGGCTGACAGCCAAACTCGACCGTCGTCAAAAGCTGGTCCATGGAGGAAGATGCTTTCATCTAAAGACTTAAATTTTGTTGGATACACATATAAGAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGGCTGAGCTGAAGAAGAAGCCCTCCAAATCAAAGAGACCATCCATTAAGTCGCTTTTCGATTCCGAGTCAGAGACGTCAGAGTTGTCTGAGGTTTCTGATACGTCTGCAAGTGATCGACCTCAAGGAAGCTTTTTGAATCTTTTGCCACCCAAGTTAGAGGCATCTCATAGTGAGAGGAATCTTACTCATAAGTCCTAA

Protein sequence

>Msa0092060

MYEMLVGYPPFYSDDPMTTCRKLILSKIVNWKSHLKFPDEAGLSPEAKDLISRLICNVNHRLGSKGADEIKAHRFFKGVEWDKLYQIEAAFIPEVNDELDTQNFEKFDEADSQTRPSSKAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKPSKSKRPSIKSLFDSESETSELSEVSDTSASDRPQGSFLNLLPPKLEASHSERNLTHKS*