AlfalfaGEDB | Msa0098720

M. sativa cultivar zhongmu-4 / Msa0098720

KEGG: K04424
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF14381.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098720	sp\|Q9FPR3\|EDR1_ARATH	68.797	266	60	1	656	898	663	928	1.38e-120	392
Msa0098720	sp\|Q9FPR3\|EDR1_ARATH	38.421	380	198	8	4	369	1	358	5.87e-65	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098720	G7IB74	94.962	933	17	3	1	906	1	930	0.0	1818

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0098530	Msa0098720	0.926386	5.035872e-91	-8.615850e-47
Msa0098720	Msa1166160	0.801489	8.788079e-49	-8.615850e-47
Msa0098720	Msa1389700	0.936845	9.046109e-98	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098720	MtrunA17_Chr1g0151541	94.962	933	17	3	1	906	1	930	0.0	1818
Msa0098720	MtrunA17_Chr1g0191171	70.301	266	56	1	656	898	683	948	3.37e-124	399
Msa0098720	MtrunA17_Chr1g0191171	43.213	361	150	9	3	334	9	343	6.88e-73	259
Msa0098720	MtrunA17_Chr8g0392871	57.099	324	98	4	604	904	696	1001	6.76e-117	381
Msa0098720	MtrunA17_Chr8g0392871	39.631	434	202	16	78	470	104	518	5.45e-72	257
Msa0098720	MtrunA17_Chr6g0482711	60.886	271	83	1	649	896	647	917	4.98e-114	371
Msa0098720	MtrunA17_Chr6g0482711	40.909	418	219	11	78	486	103	501	2.33e-78	274
Msa0098720	MtrunA17_Chr2g0294351	55.224	268	97	1	655	899	459	726	1.48e-95	317
Msa0098720	MtrunA17_Chr1g0179331	50.000	304	123	3	616	894	513	812	1.36e-93	313
Msa0098720	MtrunA17_Chr1g0179331	34.135	208	123	4	130	329	183	384	2.50e-30	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098720	AT5G11850.1	70.740	311	58	3	610	897	567	867	1.05e-147	459
Msa0098720	AT5G11850.1	53.037	428	177	6	72	481	87	508	1.04e-130	414
Msa0098720	AT1G08720.1	68.797	266	60	1	656	898	663	928	1.40e-121	392
Msa0098720	AT1G08720.1	38.421	380	198	8	4	369	1	358	5.96e-66	239
Msa0098720	AT1G18160.1	64.552	268	72	1	656	900	709	976	4.58e-119	386
Msa0098720	AT1G18160.1	38.710	434	222	13	67	472	102	519	5.73e-72	257
Msa0098720	AT1G73660.1	64.706	272	70	2	656	904	742	1010	4.10e-117	382
Msa0098720	AT1G08720.2	70.082	244	50	1	656	876	663	906	1.21e-113	370
Msa0098720	AT1G08720.2	38.421	380	198	8	4	369	1	358	4.35e-66	239
Msa0098720	AT1G18160.2	66.803	244	58	1	656	876	709	952	5.89e-111	364

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Find 245 sgRNAs with CRISPR-Local

Find 632 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAACTTCAGTAACG+GGG	0.707001	1_3:+4729207	None:intergenic
AAAAGTTCGTAGAAGATTGG+AGG	0.513520	1_3:-4739132	Msa0098720:five_prime_UTR
AAACATACCTTCAGCTGCTC+TGG	0.442463	1_3:+4729526	None:intergenic
AAACTCAACTTCAGTAACGG+GGG	0.716243	1_3:+4729208	None:intergenic
AAAGTTCGTAGAAGATTGGA+GGG	0.608131	1_3:-4739131	Msa0098720:five_prime_UTR
AAATCACGAAACAAATTAAG+CGG	0.607391	1_3:-4739104	Msa0098720:five_prime_UTR
AAATCTCGATGGACAACGGG+AGG	0.641806	1_3:+4732242	None:intergenic
AAATTATTCTTTGCCTGCAG+AGG	0.543498	1_3:-4729343	Msa0098720:three_prime_UTR
AACAACTTATATCCAATGCT+TGG	0.517377	1_3:-4735607	Msa0098720:CDS
AACACTCTTCAAACAAGGCA+CGG	0.509530	1_3:+4737060	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAAAGTTCGTAGAAGAT+TGG	-	chr1_3:4729239-4729258	Msa0098720:three_prime_UTR	30.0%
ATTGGATTGTGATTGTTGAT+TGG	+	chr1_3:4729463-4729482	None:intergenic	30.0%
TTGAAGTGTAATTGGAGTTA+GGG	-	chr1_3:4729825-4729844	Msa0098720:intron	30.0%
TGCTTAGTTAGTTCCATTAA+TGG	-	chr1_3:4729930-4729949	Msa0098720:intron	30.0%
AATTAACTTTAGACAACTGG+TGG	-	chr1_3:4730045-4730064	Msa0098720:intron	30.0%
TTAAAACACACACAACAACA+AGG	+	chr1_3:4730509-4730528	None:intergenic	30.0%
GGTGTACAACATAACAATAT+CGG	+	chr1_3:4730553-4730572	None:intergenic	30.0%
CAGATTAAAAAAACTGACTG+TGG	-	chr1_3:4730645-4730664	Msa0098720:CDS	30.0%
TTCATAATCAACATTTCGTG+AGG	+	chr1_3:4731238-4731257	None:intergenic	30.0%
CTGATAATATCATGACAAAG+TGG	-	chr1_3:4731427-4731446	Msa0098720:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	4729195	4739201	4729195	ID=Msa0098720;Name=Msa0098720
chr1_3	mRNA	4729195	4739201	4729195	ID=Msa0098720-mRNA-1;Parent=Msa0098720;Name=Msa0098720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=205\|0.90\|1\|1\|1\|1\|12\|415\|906
chr1_3	exon	4729195	4729703	4729195	ID=Msa0098720-mRNA-1:exon:1669;Parent=Msa0098720-mRNA-1
chr1_3	exon	4730367	4730543	4730367	ID=Msa0098720-mRNA-1:exon:1668;Parent=Msa0098720-mRNA-1
chr1_3	exon	4730628	4730677	4730628	ID=Msa0098720-mRNA-1:exon:1667;Parent=Msa0098720-mRNA-1
chr1_3	exon	4732199	4732297	4732199	ID=Msa0098720-mRNA-1:exon:1666;Parent=Msa0098720-mRNA-1
chr1_3	exon	4732780	4732858	4732780	ID=Msa0098720-mRNA-1:exon:1665;Parent=Msa0098720-mRNA-1
chr1_3	exon	4733135	4733235	4733135	ID=Msa0098720-mRNA-1:exon:1664;Parent=Msa0098720-mRNA-1
chr1_3	exon	4733318	4733386	4733318	ID=Msa0098720-mRNA-1:exon:1663;Parent=Msa0098720-mRNA-1
chr1_3	exon	4734313	4734353	4734313	ID=Msa0098720-mRNA-1:exon:1662;Parent=Msa0098720-mRNA-1
chr1_3	exon	4734687	4735750	4734687	ID=Msa0098720-mRNA-1:exon:1661;Parent=Msa0098720-mRNA-1
chr1_3	exon	4736363	4736466	4736363	ID=Msa0098720-mRNA-1:exon:1660;Parent=Msa0098720-mRNA-1
chr1_3	exon	4736845	4737285	4736845	ID=Msa0098720-mRNA-1:exon:1659;Parent=Msa0098720-mRNA-1
chr1_3	exon	4738595	4739201	4738595	ID=Msa0098720-mRNA-1:exon:1658;Parent=Msa0098720-mRNA-1
chr1_3	five_prime_UTR	4738997	4739201	4738997	ID=Msa0098720-mRNA-1:five_prime_utr;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4738595	4738996	4738595	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4736845	4737285	4736845	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4736363	4736466	4736363	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4734687	4735750	4734687	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4734313	4734353	4734313	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4733318	4733386	4733318	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4733135	4733235	4733135	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4732780	4732858	4732780	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4732199	4732297	4732199	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4730628	4730677	4730628	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4730367	4730543	4730367	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	CDS	4729610	4729703	4729610	ID=Msa0098720-mRNA-1:cds;Parent=Msa0098720-mRNA-1
chr1_3	three_prime_UTR	4729195	4729609	4729195	ID=Msa0098720-mRNA-1:three_prime_utr;Parent=Msa0098720-mRNA-1

Gene Sequence

>Msa0098720

ATGCCTAAAATGAAGCAACTCCTTCGAAAGCTTCACATCGGTGGTGGCACTGCTGCTTCTCCAATCAACAATCACAATCCAATCGCAAACGCAAACGTAGCATTGCCACTTTCTCACTCCGATTCTCTCAATACAACTCCTTCTCCTTCGCCGTCTCCTTCTCCGTCTCCGACGGTGGTTCAGAATCCCCGAAACGACGGCGCTGGTGTCAACGACTTTAATCTGTTACAGGAAGAAGAGTTTCAGGTTCAATTAGCGCTTGCGATTAGTGCTTCTGATTCCGATCCGAAGGATGTTGATGAATCTGCTCAGATCGATGCTGCTAAACAGATCAGCCTTGGCTATTCTGCCTCGCTTACGGATACTCCTGCACTTGTTCAGTTTCAATCGCTTCGTTATTGGAATTATAATGTAATTGCTTATGATGAGAAAGTGATGGATGGGTTTTATGACGTCTATGGGATCGACGCAAGTTTAATTGAACGTGGAAAGATGCCATTGTTGGTGGATCTGAAAACTGTGCCCACCTCACGAAATGTTGATTATGAAGTAATCTCGGTGAACCGTGTTGTTGATGTCGAGCTAAGTCAGCTTGAGGAAAAAGCCCGTGCCTTGTTTGAAGAGTGTTCTGTTACCGAACTAGGACTGTTTTTGAGTGGCTTAATCCAGAAACTTGCTGATGTTGTTGTTAATAGAATGGGTGGGCCAGTTGGTAGTGCTGATAATATCATGACAAAGTGGGCTATGAGGAGCCATGAATTGCGAGATTCTTTAAGAACTGTCGTCCTTCCTCTTGGCTGTCTAGATGTTGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGGTTAATATTCCCTGCATGCTTGTAAAAGGGAGCTATTACACAGGAACTGATGATGGGGCTGTGAATTTGATTAAAGCTGACGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGTACTCTTATTCCTGCTGAGGTGCCCAGCAGTCAGATCCAAAACTATGGTTTTGCTGGTAGGGATTTTGCAGAGATTGCAGGACAACATAACAACTTATATCCAATGCTTGGTGATGAAACTGATGTGCTGGGGGTATTGTCTGATTGTACCGTAGGGAGGGTCCAGACAAAAGAGTTAATAAAAATTGGAAGTCAAACAAAACCAGATGAAATAAATCATGCTAAGGTAAATGAAGAAGGGAGATTTAAGCATACAGATGCGTATGGATCCTCATCACATCCAGAGTCATCACATGCAGAAAACATGCATGTAAAAAATGTGTCACAGTATGTTCTCAGTGCCGCAAAGAACCCAGAGTTTGCCTCAAAACTGCACACTATTCTTTTAGAAAGTGGTGCATCACCTCCTTCTGATCTTTTTTCAGATATGAATTCCCGACATAGGGGTTTAGATACTGTTCAAGCTGACCAAAATAGGCTGTTATTAAGTTATGACAAGTCTCTCATACTCCCTCAAGGAGTGGGCTCTGCTGGTAATACTAGGTTATGTCAAGCGGCGGACCAGTTAACCGAACAGCAAAAAGAATTACACACTGATGCCATTGAATTTTATGATTCTTCGCGAAGTAGTTGTACAAGGAATGCTTTTGCAGCTGTTTCCGGTAAAGATAGCGATATTGAGCAGTCTAATCCATTAATTGTTGACTGCGCTTGTCTTAATACACACAAGACATGTAAAGAAGAGTGTCCCGAGTCTTCCTTGCCCAAGACAGTCCTTTCTTGCAAAAGGCATAATGGTGTTGAATGTTTTTGTGATGATGATGAAAGTGGTCCTAGAAATGAGGCTGGAGCTTCTTCGAATAACATTGAACTTGGGAATGATTCAGTCATTCAAATAAACGAGACGGTCATTGGAGATTGTGTCCTATATGATGACGATAAAACCAAGAAAGTTCACCCAATACTTGGTGAAGACACACAATGGGAAATTCAATGGGAGGATCTTGTCGTTGGCGAGCGTATTGGTATTGGTTCTTACGGTGAAGTTTACCGTGCTGATTGTAATGGCACTGAAGTTGCTGTAAAGAAGTTTTTAGACCAAGACGTCTCTGGCGATGCACTAGATCAGTTCAAATCGGAAATTGAGATTATGCTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCTCCTCATTTCTCTATCTTGACAGAGTTTCTTCCTAGAGGCAGTTTATATAGGATATTGCATCGTCCCAATCTTGTACTTGATGAGAAGAGGCGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACCAGCCATCCTCCCGTTGTCCATCGAGATTTAAAGACTCCAAACCTTCTTGTTGACAGAAATTGGGTTGTAAAGCCTGAGTGGATGGCGCCAGAAGTTTTACGCAACGAGCCTGCCAATGAGAAGTGTGATGTATATAGTTTTGGTGTGATCTTGTGGGAGTTAACTACCACGAAAATCCCATGGCATGGCATGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAAACGTCTTGAGATTCCAGAAGAAATGGATCCAGGAGTAGCTCAAATAATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCCTTCTCACAGCTGATGTCTCGTCTTTACCGTCTTCGCCAATTGGTTGCCCGTAAAACGGGCTCTACACATTAA

Protein sequence

>Msa0098720

MPKMKQLLRKLHIGGGTAASPINNHNPIANANVALPLSHSDSLNTTPSPSPSPSPSPTVVQNPRNDGAGVNDFNLLQEEEFQVQLALAISASDSDPKDVDESAQIDAAKQISLGYSASLTDTPALVQFQSLRYWNYNVIAYDEKVMDGFYDVYGIDASLIERGKMPLLVDLKTVPTSRNVDYEVISVNRVVDVELSQLEEKARALFEECSVTELGLFLSGLIQKLADVVVNRMGGPVGSADNIMTKWAMRSHELRDSLRTVVLPLGCLDVGLSRHRALLFKVLADRVNIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQIQNYGFAGRDFAEIAGQHNNLYPMLGDETDVLGVLSDCTVGRVQTKELIKIGSQTKPDEINHAKVNEEGRFKHTDAYGSSSHPESSHAENMHVKNVSQYVLSAAKNPEFASKLHTILLESGASPPSDLFSDMNSRHRGLDTVQADQNRLLLSYDKSLILPQGVGSAGNTRLCQAADQLTEQQKELHTDAIEFYDSSRSSCTRNAFAAVSGKDSDIEQSNPLIVDCACLNTHKTCKEECPESSLPKTVLSCKRHNGVECFCDDDESGPRNEAGASSNNIELGNDSVIQINETVIGDCVLYDDDKTKKVHPILGEDTQWEIQWEDLVVGERIGIGSYGEVYRADCNGTEVAVKKFLDQDVSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRILHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKTPNLLVDRNWVVKPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTKIPWHGMNPMQVVGAVGFQNKRLEIPEEMDPGVAQIIRDCWQTEPHLRPSFSQLMSRLYRLRQLVARKTGSTH*