AlfalfaGEDB | Msa0099960

M. sativa cultivar zhongmu-4 / Msa0099960

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030001 GO:0035556 GO:0036211 GO:0042538 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099960	XP_003588823.1	97.398	269	7	0	1	269	1	269	0.0	542

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099960	sp\|Q8W1D5\|CIPKP_ARATH	75.373	268	66	0	2	269	32	299	6.82e-154	441

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099960	G7I7M2	97.398	269	7	0	1	269	1	269	0.0	542

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005760	Msa0099960	0.914398	2.009423e-84	-8.615850e-47
Msa0054210	Msa0099960	0.890136	1.294381e-73	-8.615850e-47
Msa0099960	Msa0100050	0.896587	3.196508e-76	-8.615850e-47
Msa0099960	Msa0144460	0.915301	6.921841e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099960	MtrunA17_Chr1g0150321	97.398	269	7	0	1	269	1	269	0.0	542
Msa0099960	MtrunA17_Chr7g0244521	69.288	267	82	0	3	269	2	268	5.36e-135	390
Msa0099960	MtrunA17_Chr4g0001331	67.669	266	86	0	7	272	14	279	4.39e-133	385
Msa0099960	MtrunA17_Chr2g0284031	64.662	266	94	0	6	271	24	289	2.11e-128	375
Msa0099960	MtrunA17_Chr4g0013131	65.543	267	92	0	3	269	2	268	4.94e-128	372
Msa0099960	MtrunA17_Chr2g0284011	63.941	269	97	0	3	271	2	270	6.39e-126	366
Msa0099960	MtrunA17_Chr2g0333821	67.954	259	83	0	5	263	6	264	7.63e-124	360
Msa0099960	MtrunA17_Chr5g0432471	63.158	266	98	0	3	268	2	267	2.27e-123	360
Msa0099960	MtrunA17_Chr8g0379091	61.029	272	101	2	7	273	20	291	3.61e-121	356
Msa0099960	MtrunA17_Chr3g0107051	61.597	263	101	0	9	271	17	279	5.20e-121	353

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099960	AT5G25110.1	75.373	268	66	0	2	269	32	299	6.93e-155	441
Msa0099960	AT5G10930.1	72.894	273	72	2	1	272	1	272	2.49e-149	426
Msa0099960	AT5G45820.1	67.790	267	82	1	8	270	7	273	1.22e-131	380
Msa0099960	AT5G01810.3	63.670	267	97	0	3	269	2	268	4.01e-129	372
Msa0099960	AT5G01810.1	63.670	267	97	0	3	269	2	268	1.58e-128	372
Msa0099960	AT5G01810.2	63.670	267	97	0	3	269	2	268	1.58e-128	372
Msa0099960	AT5G58380.1	64.419	267	95	0	3	269	2	268	3.02e-127	371
Msa0099960	AT4G18700.1	64.394	264	94	0	8	271	21	284	7.73e-126	367
Msa0099960	AT1G30270.1	63.740	262	94	1	11	271	29	290	1.18e-125	367
Msa0099960	AT1G30270.2	63.740	262	94	1	11	271	29	290	1.71e-125	366

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Find 54 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTTCAACCGGAGA+AGG	0.541927	1_3:+6362383	Msa0099960:CDS
AAAGCTGATACTTGGTCTTG+TGG	0.532427	1_3:+6362869	Msa0099960:CDS
AACGTGAAATTTCAGTGATG+AGG	0.555447	1_3:+6362468	Msa0099960:CDS
AAGAATATCAATTTCCACCT+TGG	0.459693	1_3:+6362975	Msa0099960:CDS
AATCTCAAAGATTCTTGTGG+CGG	0.596621	1_3:+6363021	Msa0099960:CDS
AATCTTAAAGTCTCCGATTT+TGG	0.178673	1_3:+6362734	Msa0099960:CDS
ACCTCGGGTGCCACGTAAGC+AGG	0.470842	1_3:-6362818	None:intergenic
AGAAGGTGTAGCAATTAAGG+TGG	0.669423	1_3:+6362400	Msa0099960:CDS
ATGGGAAGAGTACTAGGTAA+AGG	0.549869	1_3:+6362335	Msa0099960:CDS
ATGTGGAACTCCTGCTTACG+TGG	0.564717	1_3:+6362808	Msa0099960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGCCAAAGAAATTTCAAC+CGG	+	chr1_3:6362377-6362396	Msa0099960:CDS	30.0%
GGTAGCAAAAGGTAAATTTA+AGG	+	chr1_3:6362595-6362614	Msa0099960:CDS	30.0%
TCTACTATGGCAATAATCTA+CGG	-	chr1_3:6362660-6362679	None:intergenic	30.0%
ATTCTTTATGCTTTACTTGC+TGG	+	chr1_3:6362896-6362915	Msa0099960:CDS	30.0%
AAGAATATCAATTTCCACCT+TGG	+	chr1_3:6362975-6362994	Msa0099960:CDS	30.0%
GAGATTAATCTCTTTGATTC+AGG	-	chr1_3:6363007-6363026	None:intergenic	30.0%
TACTACTGCAAATGATGATT+TGG	+	chr1_3:6363119-6363138	Msa0099960:CDS	30.0%
TATGCCAAAGAAATTTCAAC+CGG	+	chr1_3:6362377-6362396	Msa0099960:CDS	30.0%
GGTAGCAAAAGGTAAATTTA+AGG	+	chr1_3:6362595-6362614	Msa0099960:CDS	30.0%
TCTACTATGGCAATAATCTA+CGG	-	chr1_3:6362660-6362679	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	6362293	6363159	6362293	ID=Msa0099960;Name=Msa0099960
chr1_3	mRNA	6362293	6363159	6362293	ID=Msa0099960-mRNA-1;Parent=Msa0099960;Name=Msa0099960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|288
chr1_3	exon	6362293	6363159	6362293	ID=Msa0099960-mRNA-1:exon:2377;Parent=Msa0099960-mRNA-1
chr1_3	CDS	6362293	6363159	6362293	ID=Msa0099960-mRNA-1:cds;Parent=Msa0099960-mRNA-1

Gene Sequence

>Msa0099960

ATGGAAGAAGTGAAAGCACACATGTTATTTGGCAAGTACGAGATGGGAAGAGTACTAGGTAAAGGAACATTTGCAAAAGTGTACTATGCCAAAGAAATTTCAACCGGAGAAGGTGTAGCAATTAAGGTGGTAGACAAAGACAAAGTGAAAAAAGAAGGCATGATGGAACAAATCAAACGTGAAATTTCAGTGATGAGGTTAGTAAAACATCCAAACATCGTCAACCTTAAAGAAGTCATGGCAACAAAGACCAAAATCTTGTTTGTCATGGAATATGCACGTGGCGGCGAATTATTCGAGAAGGTAGCAAAAGGTAAATTTAAGGAAGAACTTGCAAGAAAGTACTTCCAACAGCTTATAAGTGCCGTAGATTATTGCCATAGTAGAGGTGTTTCTCATCGCGATTTAAAACCGGAGAATTTATTACTTGATGAAAACGAGAATCTTAAAGTCTCCGATTTTGGTCTCTCTGCTTTGCCTGAACACCTTCGTCAGGACGGGCTTTTACATACTCAATGTGGAACTCCTGCTTACGTGGCACCCGAGGTAGTTAGAAAAAGAGGTTATAACGGTTTTAAAGCTGATACTTGGTCTTGTGGTGTTATTCTTTATGCTTTACTTGCTGGATTTTTACCTTTTCAACATGAAAATTTAATTTCCATGTATAATAAAGTTTTCAAAGAAGAATATCAATTTCCACCTTGGTTTTCACCTGAATCAAAGAGATTAATCTCAAAGATTCTTGTGGCGGATCCTGAAAGAAGAATCACTATTGCTTCAATCATGAAGTTCCATGGTTTCAAAAAGGTTTATGTTTATCAACAACTACTACTGCAAATGATGATTTGGAGTTGGAATCAAAGGTGA

Protein sequence

>Msa0099960

MEEVKAHMLFGKYEMGRVLGKGTFAKVYYAKEISTGEGVAIKVVDKDKVKKEGMMEQIKREISVMRLVKHPNIVNLKEVMATKTKILFVMEYARGGELFEKVAKGKFKEELARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENENLKVSDFGLSALPEHLRQDGLLHTQCGTPAYVAPEVVRKRGYNGFKADTWSCGVILYALLAGFLPFQHENLISMYNKVFKEEYQFPPWFSPESKRLISKILVADPERRITIASIMKFHGFKKVYVYQQLLLQMMIWSWNQR*