Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100620 | XP_003588700.1 | 95.302 | 447 | 19 | 1 | 1 | 445 | 1 | 447 | 0.0 | 890 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100620 | sp|Q9SVM9|CER26_ARATH | 28.095 | 420 | 268 | 13 | 12 | 425 | 21 | 412 | 1.35e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100620 | G7I6C6 | 95.302 | 447 | 19 | 1 | 1 | 445 | 1 | 447 | 0.0 | 890 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100620 | Msa0309770 | 0.802823 | 4.672145e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100620 | MtrunA17_Chr1g0148851 | 95.302 | 447 | 19 | 1 | 1 | 445 | 1 | 447 | 0.0 | 890 |
| Msa0100620 | MtrunA17_Chr7g0274021 | 31.974 | 466 | 270 | 14 | 5 | 444 | 8 | 452 | 9.13e-72 | 233 |
| Msa0100620 | MtrunA17_Chr8g0378151 | 24.688 | 401 | 283 | 9 | 30 | 429 | 37 | 419 | 5.74e-29 | 118 |
| Msa0100620 | MtrunA17_Chr1g0163441 | 27.033 | 418 | 260 | 15 | 27 | 429 | 36 | 423 | 1.47e-23 | 102 |
| Msa0100620 | MtrunA17_Chr3g0132831 | 24.886 | 438 | 276 | 17 | 27 | 442 | 34 | 440 | 1.48e-21 | 96.7 |
| Msa0100620 | MtrunA17_Chr2g0298091 | 24.821 | 419 | 270 | 13 | 27 | 429 | 35 | 424 | 2.00e-21 | 96.3 |
| Msa0100620 | MtrunA17_Chr8g0386141 | 23.765 | 324 | 222 | 10 | 39 | 349 | 39 | 350 | 7.53e-19 | 88.6 |
| Msa0100620 | MtrunA17_Chr4g0072041 | 24.503 | 453 | 279 | 16 | 11 | 423 | 17 | 446 | 2.42e-18 | 87.0 |
| Msa0100620 | MtrunA17_Chr5g0399681 | 29.167 | 240 | 158 | 5 | 7 | 238 | 12 | 247 | 2.81e-18 | 85.9 |
| Msa0100620 | MtrunA17_Chr2g0334001 | 23.111 | 450 | 301 | 16 | 7 | 434 | 3 | 429 | 8.80e-17 | 82.0 |
| Msa0100620 | MtrunA17_Chr4g0001861 | 22.551 | 439 | 271 | 13 | 28 | 432 | 25 | 428 | 2.75e-16 | 80.5 |
| Msa0100620 | MtrunA17_Chr3g0087401 | 24.534 | 322 | 209 | 10 | 5 | 304 | 2 | 311 | 8.87e-15 | 76.3 |
| Msa0100620 | MtrunA17_Chr5g0438681 | 28.488 | 172 | 109 | 5 | 13 | 175 | 5 | 171 | 1.38e-14 | 75.5 |
| Msa0100620 | MtrunA17_Chr5g0438701 | 28.902 | 173 | 109 | 5 | 13 | 176 | 5 | 172 | 1.50e-14 | 75.5 |
| Msa0100620 | MtrunA17_Chr8g0361781 | 29.282 | 181 | 114 | 5 | 10 | 180 | 2 | 178 | 1.83e-14 | 75.1 |
| Msa0100620 | MtrunA17_Chr8g0371821 | 23.573 | 403 | 274 | 14 | 38 | 425 | 35 | 418 | 2.42e-14 | 74.7 |
| Msa0100620 | MtrunA17_Chr4g0004691 | 26.752 | 157 | 108 | 2 | 21 | 175 | 19 | 170 | 3.84e-14 | 70.9 |
| Msa0100620 | MtrunA17_Chr7g0235531 | 23.848 | 369 | 244 | 13 | 8 | 351 | 6 | 362 | 4.66e-14 | 73.9 |
| Msa0100620 | MtrunA17_Chr4g0054081 | 23.666 | 431 | 281 | 14 | 25 | 423 | 28 | 442 | 5.53e-14 | 73.6 |
| Msa0100620 | MtrunA17_Chr8g0376901 | 28.324 | 173 | 110 | 5 | 13 | 176 | 5 | 172 | 7.67e-14 | 73.2 |
| Msa0100620 | MtrunA17_Chr3g0132001 | 22.699 | 326 | 222 | 12 | 39 | 349 | 46 | 356 | 6.19e-13 | 70.5 |
| Msa0100620 | MtrunA17_Chr8g0361771 | 29.775 | 178 | 111 | 5 | 13 | 180 | 5 | 178 | 8.28e-13 | 70.1 |
| Msa0100620 | MtrunA17_Chr7g0224391 | 22.769 | 325 | 224 | 11 | 39 | 349 | 48 | 359 | 1.27e-12 | 69.3 |
| Msa0100620 | MtrunA17_Chr4g0027071 | 23.810 | 315 | 219 | 11 | 13 | 312 | 19 | 327 | 1.26e-11 | 66.2 |
| Msa0100620 | MtrunA17_Chr5g0442721 | 22.991 | 448 | 288 | 15 | 4 | 411 | 9 | 439 | 1.35e-11 | 66.2 |
| Msa0100620 | MtrunA17_Chr8g0376891 | 27.168 | 173 | 112 | 5 | 13 | 176 | 5 | 172 | 2.54e-11 | 65.5 |
| Msa0100620 | MtrunA17_Chr2g0306321 | 25.000 | 380 | 228 | 15 | 5 | 349 | 18 | 375 | 2.63e-11 | 65.5 |
| Msa0100620 | MtrunA17_Chr6g0470591 | 25.163 | 306 | 204 | 12 | 25 | 311 | 30 | 329 | 6.67e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100620 | AT4G29250.1 | 48.132 | 455 | 209 | 7 | 5 | 445 | 14 | 455 | 3.13e-145 | 422 |
| Msa0100620 | AT4G13840.1 | 28.095 | 420 | 268 | 13 | 12 | 425 | 21 | 412 | 1.37e-28 | 117 |
| Msa0100620 | AT3G23840.1 | 24.433 | 397 | 267 | 9 | 12 | 405 | 19 | 385 | 1.64e-26 | 111 |
| Msa0100620 | AT4G24510.1 | 25.346 | 434 | 280 | 15 | 12 | 432 | 13 | 415 | 5.37e-24 | 103 |
| Msa0100620 | AT5G02890.1 | 38.415 | 164 | 90 | 6 | 36 | 188 | 42 | 205 | 7.33e-24 | 102 |
| Msa0100620 | AT5G48930.1 | 23.614 | 415 | 294 | 12 | 28 | 431 | 25 | 427 | 5.65e-18 | 86.3 |
| Msa0100620 | AT2G19070.1 | 22.067 | 358 | 251 | 10 | 12 | 351 | 11 | 358 | 2.71e-17 | 84.3 |
| Msa0100620 | AT5G41040.2 | 25.223 | 337 | 203 | 12 | 39 | 349 | 49 | 362 | 8.90e-17 | 82.8 |
| Msa0100620 | AT5G41040.1 | 25.223 | 337 | 203 | 12 | 39 | 349 | 65 | 378 | 1.08e-16 | 82.4 |
| Msa0100620 | AT3G30280.1 | 23.163 | 449 | 284 | 17 | 25 | 444 | 27 | 443 | 9.28e-16 | 79.7 |
| Msa0100620 | AT4G31910.1 | 25.893 | 336 | 217 | 11 | 1 | 309 | 5 | 335 | 2.47e-15 | 78.2 |
| Msa0100620 | AT5G63560.1 | 25.538 | 325 | 206 | 12 | 1 | 307 | 1 | 307 | 1.17e-14 | 75.9 |
| Msa0100620 | AT3G48720.1 | 21.939 | 392 | 261 | 13 | 39 | 410 | 41 | 407 | 4.83e-13 | 71.2 |
| Msa0100620 | AT5G47950.1 | 30.303 | 165 | 106 | 4 | 25 | 187 | 27 | 184 | 1.55e-12 | 69.3 |
| Msa0100620 | AT5G57840.1 | 22.652 | 362 | 242 | 12 | 10 | 351 | 7 | 350 | 4.14e-12 | 68.2 |
| Msa0100620 | AT1G24430.1 | 29.487 | 156 | 98 | 4 | 27 | 179 | 29 | 175 | 7.75e-12 | 67.4 |
| Msa0100620 | AT2G39980.1 | 30.811 | 185 | 118 | 5 | 12 | 187 | 9 | 192 | 8.51e-12 | 67.4 |
| Msa0100620 | AT4G15390.1 | 25.490 | 204 | 131 | 6 | 10 | 198 | 7 | 204 | 2.70e-11 | 65.9 |
| Msa0100620 | AT4G15390.2 | 25.490 | 204 | 131 | 6 | 10 | 198 | 7 | 204 | 2.70e-11 | 65.9 |
| Msa0100620 | AT1G31490.1 | 27.684 | 177 | 118 | 4 | 13 | 185 | 13 | 183 | 7.47e-11 | 64.3 |
Find 105 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACTCAAACTTGTTTAT+TGG | 0.162566 | 1_3:-7078896 | Msa0100620:CDS |
| TGTTGACATGTCCCTATATT+TGG | 0.177819 | 1_3:-7078140 | Msa0100620:CDS |
| AAGCCCTAGCAGGGTTGTTT+TGG | 0.210131 | 1_3:-7078201 | Msa0100620:CDS |
| TGAGAATCCCATTTCTATTA+AGG | 0.219456 | 1_3:-7078332 | Msa0100620:CDS |
| TGCTTCAAAAGCCTTATTAT+TGG | 0.220768 | 1_3:-7078866 | Msa0100620:CDS |
| AGGAATGTTGTAACTAAAAT+TGG | 0.235404 | 1_3:-7077992 | Msa0100620:CDS |
| GTACTTACCCTTATCAGTTT+TGG | 0.243920 | 1_3:-7079177 | Msa0100620:CDS |
| GGTTTAGATGAAGGATTCTT+TGG | 0.256382 | 1_3:-7078100 | Msa0100620:CDS |
| AATTGGCAATGAAGAAATAA+TGG | 0.267401 | 1_3:-7077975 | Msa0100620:CDS |
| AGAAATGGGATTCTCAATTA+AGG | 0.271665 | 1_3:+7078339 | None:intergenic |
| CTTTGCTTCCTTAATAGAAA+TGG | 0.278643 | 1_3:+7078324 | None:intergenic |
| GGAACTCAAACTTGTTTATT+GGG | 0.284123 | 1_3:-7078895 | Msa0100620:CDS |
| CTCATGTATGAGTTGTTATT+AGG | 0.290820 | 1_3:+7078382 | None:intergenic |
| AAAGTACACTACCATTTCTA+TGG | 0.302443 | 1_3:-7078305 | Msa0100620:CDS |
| TTTAGTTACAACATTCCTTA+TGG | 0.302727 | 1_3:+7077997 | None:intergenic |
| CAAAGTCTCTCTCAACTTCT+TGG | 0.305459 | 1_3:+7079076 | None:intergenic |
| TGAGGTAAAGGGTGGAATAT+TGG | 0.337688 | 1_3:+7078427 | None:intergenic |
| AATAGTACACCATCCTAATA+TGG | 0.342250 | 1_3:+7079135 | None:intergenic |
| GATAAGGGTAAGTACTTTCC+TGG | 0.347933 | 1_3:+7079185 | None:intergenic |
| GGCTTAATGAATCATTGGGC+TGG | 0.364948 | 1_3:+7078242 | None:intergenic |
| AATGACGAACGGTCATGATT+TGG | 0.365043 | 1_3:-7077909 | Msa0100620:CDS |
| TCAAATGATGTGGGTCCATT+AGG | 0.367024 | 1_3:-7077761 | Msa0100620:CDS |
| GACTTATTTCATCAAGATAG+TGG | 0.368781 | 1_3:+7077661 | None:intergenic |
| CTTCTCAAACCAAATGGTTC+AGG | 0.370889 | 1_3:-7078281 | Msa0100620:CDS |
| GCTTGGGCTGACATTTCATT+AGG | 0.371247 | 1_3:-7078469 | Msa0100620:CDS |
| AACAGCCTTCCAGTCACTAT+AGG | 0.372289 | 1_3:+7079032 | None:intergenic |
| TATTACATTGAGCCAGTGTT+TGG | 0.374917 | 1_3:-7077812 | Msa0100620:CDS |
| TACAACATTCCTTATGGCCT+TGG | 0.379945 | 1_3:+7078003 | None:intergenic |
| CCACTCTTCGACACTTCCTT+TGG | 0.386078 | 1_3:+7078941 | None:intergenic |
| TCTTGAAAGATAGCTAAGTA+TGG | 0.388378 | 1_3:+7077860 | None:intergenic |
| ACCATTACCACCCTTCCTAA+TGG | 0.391161 | 1_3:+7077746 | None:intergenic |
| CTTCAAAAGGTGTTGGTGTC+GGG | 0.393589 | 1_3:+7078221 | None:intergenic |
| TTTGCTTCCTTAATAGAAAT+GGG | 0.398290 | 1_3:+7078325 | None:intergenic |
| GCTCTAAGTCTCCTGAAGTT+TGG | 0.399293 | 1_3:+7079111 | None:intergenic |
| TGTCGGGCTTAATGAATCAT+TGG | 0.401376 | 1_3:+7078237 | None:intergenic |
| AAAATCTTGGGTTTAGATGA+AGG | 0.409023 | 1_3:-7078109 | Msa0100620:CDS |
| TGTGGTCTTTGATGAGGTAA+AGG | 0.412528 | 1_3:+7078415 | None:intergenic |
| CAACAAAATTCATGAAGGCT+TGG | 0.415748 | 1_3:-7078486 | Msa0100620:CDS |
| GAAACGATCCAAAACTGATA+AGG | 0.417275 | 1_3:+7079169 | None:intergenic |
| GAAGAAGGTGGATTAGCAAT+TGG | 0.417465 | 1_3:-7078547 | Msa0100620:CDS |
| ACAGCCTTCCAGTCACTATA+GGG | 0.420061 | 1_3:+7079033 | None:intergenic |
| GTGTACTATTACCAAACTTC+AGG | 0.428753 | 1_3:-7079122 | Msa0100620:CDS |
| CCTAAGCTGCACTCATCTCT+TGG | 0.430386 | 1_3:-7078524 | Msa0100620:CDS |
| ATTGGCAATGAAGAAATAAT+GGG | 0.434738 | 1_3:-7077974 | Msa0100620:CDS |
| ATGTAATAAGAGACATGAAT+TGG | 0.441908 | 1_3:+7077827 | None:intergenic |
| AAACGATCCAAAACTGATAA+GGG | 0.445551 | 1_3:+7079170 | None:intergenic |
| CAGCTGACTGAATTTGAAGA+AGG | 0.447377 | 1_3:-7078562 | Msa0100620:CDS |
| GTTTAGATGAAGGATTCTTT+GGG | 0.447774 | 1_3:-7078099 | Msa0100620:CDS |
| ATATACAAGCCTGAACCATT+TGG | 0.458775 | 1_3:+7078272 | None:intergenic |
| CCAAGAGATGAGTGCAGCTT+AGG | 0.461141 | 1_3:+7078524 | None:intergenic |
| TGAATCATTGGGCTGGGCCA+TGG | 0.462505 | 1_3:+7078249 | None:intergenic |
| TCCATTAGGAAGGGTGGTAA+TGG | 0.471778 | 1_3:-7077747 | Msa0100620:CDS |
| AACAAAATTCATGAAGGCTT+GGG | 0.472221 | 1_3:-7078485 | Msa0100620:CDS |
| GTTTGAGAAGCCCATAGAAA+TGG | 0.474258 | 1_3:+7078294 | None:intergenic |
| TATGGGCTTCTCAAACCAAA+TGG | 0.476017 | 1_3:-7078287 | Msa0100620:CDS |
| CTTATGGCCTTGGTAGCTTG+TGG | 0.478066 | 1_3:+7078013 | None:intergenic |
| CACAAGCTACCAAGGCCATA+AGG | 0.480188 | 1_3:-7078012 | Msa0100620:CDS |
| GTGGTCTTTGATGAGGTAAA+GGG | 0.480337 | 1_3:+7078416 | None:intergenic |
| TGACCCAAAACAACCCTGCT+AGG | 0.485193 | 1_3:+7078197 | None:intergenic |
| GCTTCAAAAGGTGTTGGTGT+CGG | 0.490268 | 1_3:+7078220 | None:intergenic |
| GTGGCTACGAAGCGTGGATA+GGG | 0.492334 | 1_3:-7078922 | Msa0100620:CDS |
| TTGTGCAACAAAATTCATGA+AGG | 0.500379 | 1_3:-7078491 | Msa0100620:CDS |
| AGTCATTTCCCTATAGTGAC+TGG | 0.501513 | 1_3:-7079041 | Msa0100620:CDS |
| ACTTCAGGAGACTTAGAGCT+TGG | 0.507299 | 1_3:-7079107 | Msa0100620:CDS |
| AACCCTGCTAGGGCTTCAAA+AGG | 0.513488 | 1_3:+7078208 | None:intergenic |
| GCTTAATGAATCATTGGGCT+GGG | 0.514964 | 1_3:+7078243 | None:intergenic |
| GTCGGGCTTAATGAATCATT+GGG | 0.527257 | 1_3:+7078238 | None:intergenic |
| CTGACTGAATTTGAAGAAGG+TGG | 0.529705 | 1_3:-7078559 | Msa0100620:CDS |
| CGAAGAGTGGCTACGAAGCG+TGG | 0.530518 | 1_3:-7078928 | Msa0100620:CDS |
| AGAAAATTTCAATTTAGATG+AGG | 0.533930 | 1_3:-7078044 | Msa0100620:CDS |
| ACTTATTTCATCAAGATAGT+GGG | 0.534578 | 1_3:+7077662 | None:intergenic |
| ACGAAGCGTGGATAGGGAAA+AGG | 0.535969 | 1_3:-7078916 | Msa0100620:CDS |
| AGTGGCTACGAAGCGTGGAT+AGG | 0.538125 | 1_3:-7078923 | Msa0100620:CDS |
| GGTAAAGGGTGGAATATTGG+AGG | 0.541988 | 1_3:+7078430 | None:intergenic |
| GGACCCACATCATTTGATGT+TGG | 0.547931 | 1_3:+7077767 | None:intergenic |
| CAATGATGCTGGTGTTAGAA+TGG | 0.548289 | 1_3:-7078976 | Msa0100620:CDS |
| GCTAGGGCTTCAAAAGGTGT+TGG | 0.550328 | 1_3:+7078214 | None:intergenic |
| ATTGAGCCAGTGTTTGGAGA+AGG | 0.550630 | 1_3:-7077806 | Msa0100620:CDS |
| TCTTCCAACATCAAATGATG+TGG | 0.562195 | 1_3:-7077771 | Msa0100620:CDS |
| ATGATGTGGGTCCATTAGGA+AGG | 0.562379 | 1_3:-7077757 | Msa0100620:CDS |
| GACCCAAAACAACCCTGCTA+GGG | 0.567047 | 1_3:+7078198 | None:intergenic |
| AGGCTGTTAAGAGATGATAT+AGG | 0.575844 | 1_3:-7079017 | Msa0100620:CDS |
| AAGTACACTACCATTTCTAT+GGG | 0.576252 | 1_3:-7078304 | Msa0100620:CDS |
| GGTTCAGGCTTGTATATCCA+TGG | 0.576480 | 1_3:-7078266 | Msa0100620:CDS |
| GTCACTTTAAGCAAAATCAA+AGG | 0.580343 | 1_3:-7078178 | Msa0100620:CDS |
| AAATAATGGGTCTAATTGAG+TGG | 0.581897 | 1_3:-7077961 | Msa0100620:CDS |
| CAAATTTCCACAAGCTACCA+AGG | 0.588225 | 1_3:-7078020 | Msa0100620:CDS |
| AGCACAAAAGCAATTGAACC+AGG | 0.593154 | 1_3:-7079203 | Msa0100620:CDS |
| TTTGCAGATAATATTTACTG+TGG | 0.599251 | 1_3:+7079238 | None:intergenic |
| CCAAAGGAAGTGTCGAAGAG+TGG | 0.609701 | 1_3:-7078941 | Msa0100620:CDS |
| AAGATCAAATGCAATGATGC+TGG | 0.616751 | 1_3:-7078987 | Msa0100620:CDS |
| TAAGAGATGATATAGGACAT+TGG | 0.618380 | 1_3:-7079010 | Msa0100620:CDS |
| TGCTGGTGTTAGAATGGTTG+AGG | 0.619072 | 1_3:-7078970 | Msa0100620:CDS |
| ATTTCCCTATAGTGACTGGA+AGG | 0.619427 | 1_3:-7079037 | Msa0100620:CDS |
| ATGGTTGAGGCAAAAGCCAA+AGG | 0.619731 | 1_3:-7078957 | Msa0100620:CDS |
| AATGGTGACACTTCAAGAAG+AGG | 0.621787 | 1_3:-7077729 | Msa0100620:CDS |
| CTTCCAACATCAAATGATGT+GGG | 0.625384 | 1_3:-7077770 | Msa0100620:CDS |
| ACATGTCCTTCTCCAAACAC+TGG | 0.626293 | 1_3:+7077800 | None:intergenic |
| GTCTTTGATGAGGTAAAGGG+TGG | 0.639307 | 1_3:+7078419 | None:intergenic |
| TGATGTGGGTCCATTAGGAA+GGG | 0.642730 | 1_3:-7077756 | Msa0100620:CDS |
| TGTGGGTCCATTAGGAAGGG+TGG | 0.646493 | 1_3:-7077753 | Msa0100620:CDS |
| AATTCATCAGCAATGACGAA+CGG | 0.650081 | 1_3:-7077920 | Msa0100620:CDS |
| GGTGACACTTCAAGAAGAGG+AGG | 0.651973 | 1_3:-7077726 | Msa0100620:CDS |
| GAACTCTATGCTATATAACA+AGG | 0.656991 | 1_3:-7078077 | Msa0100620:CDS |
| TATTATCTGCAAAAGAACTG+TGG | 0.667085 | 1_3:-7079228 | Msa0100620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCAAAGGAATGAAAAA+TGG | - | chr1_3:7078743-7078762 | Msa0100620:intron | 20.0% |
| !!! | TTTTCTTACATCCAAATATA+GGG | + | chr1_3:7078783-7078802 | None:intergenic | 20.0% |
| !!! | TTTTTCTTACATCCAAATAT+AGG | + | chr1_3:7078784-7078803 | None:intergenic | 20.0% |
| !! | AGAAAATTTCAATTTAGATG+AGG | - | chr1_3:7078865-7078884 | Msa0100620:CDS | 20.0% |
| !! | AAAATCAAAGGAATGAAAAA+TGG | - | chr1_3:7078743-7078762 | Msa0100620:intron | 20.0% |
| !!! | TTTTCTTACATCCAAATATA+GGG | + | chr1_3:7078783-7078802 | None:intergenic | 20.0% |
| !!! | TTTTTCTTACATCCAAATAT+AGG | + | chr1_3:7078784-7078803 | None:intergenic | 20.0% |
| !! | AGAAAATTTCAATTTAGATG+AGG | - | chr1_3:7078865-7078884 | Msa0100620:CDS | 20.0% |
| ! | TTTGCAGATAATATTTACTG+TGG | + | chr1_3:7077674-7077693 | None:intergenic | 25.0% |
| ! | TAAAAAGTGGACCAATAATA+AGG | + | chr1_3:7078057-7078076 | None:intergenic | 25.0% |
| !!! | TTGAGTGTATTGTTTTAAAG+AGG | - | chr1_3:7078179-7078198 | Msa0100620:CDS | 25.0% |
| !!! | TTATTAGGCTTTTTGTTTTG+TGG | + | chr1_3:7078515-7078534 | None:intergenic | 25.0% |
| ! | TTTGCTTCCTTAATAGAAAT+GGG | + | chr1_3:7078587-7078606 | None:intergenic | 25.0% |
| ! | TTTGGATGTAAGAAAAATCT+TGG | - | chr1_3:7078787-7078806 | Msa0100620:intron | 25.0% |
| ! | TTGGATGTAAGAAAAATCTT+GGG | - | chr1_3:7078788-7078807 | Msa0100620:intron | 25.0% |
| ! | TTTAGTTACAACATTCCTTA+TGG | + | chr1_3:7078915-7078934 | None:intergenic | 25.0% |
| ! | AGGAATGTTGTAACTAAAAT+TGG | - | chr1_3:7078917-7078936 | Msa0100620:CDS | 25.0% |
| ! | AATTGGCAATGAAGAAATAA+TGG | - | chr1_3:7078934-7078953 | Msa0100620:CDS | 25.0% |
| ! | ATTGGCAATGAAGAAATAAT+GGG | - | chr1_3:7078935-7078954 | Msa0100620:CDS | 25.0% |
| ! | ATGTAATAAGAGACATGAAT+TGG | + | chr1_3:7079085-7079104 | None:intergenic | 25.0% |
| ! | TTTGCAGATAATATTTACTG+TGG | + | chr1_3:7077674-7077693 | None:intergenic | 25.0% |
| ! | TAAAAAGTGGACCAATAATA+AGG | + | chr1_3:7078057-7078076 | None:intergenic | 25.0% |
| !!! | TTGAGTGTATTGTTTTAAAG+AGG | - | chr1_3:7078179-7078198 | Msa0100620:CDS | 25.0% |
| !!! | TTATTAGGCTTTTTGTTTTG+TGG | + | chr1_3:7078515-7078534 | None:intergenic | 25.0% |
| ! | TTTGCTTCCTTAATAGAAAT+GGG | + | chr1_3:7078587-7078606 | None:intergenic | 25.0% |
| ! | TTTGGATGTAAGAAAAATCT+TGG | - | chr1_3:7078787-7078806 | Msa0100620:intron | 25.0% |
| ! | TTGGATGTAAGAAAAATCTT+GGG | - | chr1_3:7078788-7078807 | Msa0100620:intron | 25.0% |
| ! | TTTAGTTACAACATTCCTTA+TGG | + | chr1_3:7078915-7078934 | None:intergenic | 25.0% |
| ! | AGGAATGTTGTAACTAAAAT+TGG | - | chr1_3:7078917-7078936 | Msa0100620:CDS | 25.0% |
| ! | AATTGGCAATGAAGAAATAA+TGG | - | chr1_3:7078934-7078953 | Msa0100620:CDS | 25.0% |
| ! | ATTGGCAATGAAGAAATAAT+GGG | - | chr1_3:7078935-7078954 | Msa0100620:CDS | 25.0% |
| ! | ATGTAATAAGAGACATGAAT+TGG | + | chr1_3:7079085-7079104 | None:intergenic | 25.0% |
| TATTATCTGCAAAAGAACTG+TGG | - | chr1_3:7077681-7077700 | Msa0100620:CDS | 30.0% | |
| AAACGATCCAAAACTGATAA+GGG | + | chr1_3:7077742-7077761 | None:intergenic | 30.0% | |
| TCATGGAGAAAAACCATATT+AGG | - | chr1_3:7077761-7077780 | Msa0100620:CDS | 30.0% | |
| AATAGTACACCATCCTAATA+TGG | + | chr1_3:7077777-7077796 | None:intergenic | 30.0% | |
| TAAGAGATGATATAGGACAT+TGG | - | chr1_3:7077899-7077918 | Msa0100620:CDS | 30.0% | |
| ! | AGGAACTCAAACTTGTTTAT+TGG | - | chr1_3:7078013-7078032 | Msa0100620:CDS | 30.0% |
| ! | GGAACTCAAACTTGTTTATT+GGG | - | chr1_3:7078014-7078033 | Msa0100620:CDS | 30.0% |
| !! | TGCTTCAAAAGCCTTATTAT+TGG | - | chr1_3:7078043-7078062 | Msa0100620:CDS | 30.0% |
| ! | CATGAATTTTGTTGCACAAA+TGG | + | chr1_3:7078417-7078436 | None:intergenic | 30.0% |
| TTGTGCAACAAAATTCATGA+AGG | - | chr1_3:7078418-7078437 | Msa0100620:CDS | 30.0% | |
| AACAAAATTCATGAAGGCTT+GGG | - | chr1_3:7078424-7078443 | Msa0100620:CDS | 30.0% | |
| ! | CTCATGTATGAGTTGTTATT+AGG | + | chr1_3:7078530-7078549 | None:intergenic | 30.0% |
| AGAAATGGGATTCTCAATTA+AGG | + | chr1_3:7078573-7078592 | None:intergenic | 30.0% | |
| TGAGAATCCCATTTCTATTA+AGG | - | chr1_3:7078577-7078596 | Msa0100620:intron | 30.0% | |
| CTTTGCTTCCTTAATAGAAA+TGG | + | chr1_3:7078588-7078607 | None:intergenic | 30.0% | |
| AAAGTACACTACCATTTCTA+TGG | - | chr1_3:7078604-7078623 | Msa0100620:intron | 30.0% | |
| AAGTACACTACCATTTCTAT+GGG | - | chr1_3:7078605-7078624 | Msa0100620:intron | 30.0% | |
| ! | GTCACTTTAAGCAAAATCAA+AGG | - | chr1_3:7078731-7078750 | Msa0100620:intron | 30.0% |
| AAAATCTTGGGTTTAGATGA+AGG | - | chr1_3:7078800-7078819 | Msa0100620:intron | 30.0% | |
| GTTTAGATGAAGGATTCTTT+GGG | - | chr1_3:7078810-7078829 | Msa0100620:intron | 30.0% | |
| GAACTCTATGCTATATAACA+AGG | - | chr1_3:7078832-7078851 | Msa0100620:intron | 30.0% | |
| !! | AAATAATGGGTCTAATTGAG+TGG | - | chr1_3:7078948-7078967 | Msa0100620:CDS | 30.0% |
| TCTTGAAAGATAGCTAAGTA+TGG | + | chr1_3:7079052-7079071 | None:intergenic | 30.0% | |
| TATTATCTGCAAAAGAACTG+TGG | - | chr1_3:7077681-7077700 | Msa0100620:CDS | 30.0% | |
| AAACGATCCAAAACTGATAA+GGG | + | chr1_3:7077742-7077761 | None:intergenic | 30.0% | |
| TCATGGAGAAAAACCATATT+AGG | - | chr1_3:7077761-7077780 | Msa0100620:CDS | 30.0% | |
| AATAGTACACCATCCTAATA+TGG | + | chr1_3:7077777-7077796 | None:intergenic | 30.0% | |
| TAAGAGATGATATAGGACAT+TGG | - | chr1_3:7077899-7077918 | Msa0100620:CDS | 30.0% | |
| ! | AGGAACTCAAACTTGTTTAT+TGG | - | chr1_3:7078013-7078032 | Msa0100620:CDS | 30.0% |
| ! | GGAACTCAAACTTGTTTATT+GGG | - | chr1_3:7078014-7078033 | Msa0100620:CDS | 30.0% |
| !! | TGCTTCAAAAGCCTTATTAT+TGG | - | chr1_3:7078043-7078062 | Msa0100620:CDS | 30.0% |
| ! | CATGAATTTTGTTGCACAAA+TGG | + | chr1_3:7078417-7078436 | None:intergenic | 30.0% |
| TTGTGCAACAAAATTCATGA+AGG | - | chr1_3:7078418-7078437 | Msa0100620:CDS | 30.0% | |
| AACAAAATTCATGAAGGCTT+GGG | - | chr1_3:7078424-7078443 | Msa0100620:CDS | 30.0% | |
| ! | CTCATGTATGAGTTGTTATT+AGG | + | chr1_3:7078530-7078549 | None:intergenic | 30.0% |
| AGAAATGGGATTCTCAATTA+AGG | + | chr1_3:7078573-7078592 | None:intergenic | 30.0% | |
| TGAGAATCCCATTTCTATTA+AGG | - | chr1_3:7078577-7078596 | Msa0100620:intron | 30.0% | |
| CTTTGCTTCCTTAATAGAAA+TGG | + | chr1_3:7078588-7078607 | None:intergenic | 30.0% | |
| AAAGTACACTACCATTTCTA+TGG | - | chr1_3:7078604-7078623 | Msa0100620:intron | 30.0% | |
| AAGTACACTACCATTTCTAT+GGG | - | chr1_3:7078605-7078624 | Msa0100620:intron | 30.0% | |
| ! | GTCACTTTAAGCAAAATCAA+AGG | - | chr1_3:7078731-7078750 | Msa0100620:intron | 30.0% |
| AAAATCTTGGGTTTAGATGA+AGG | - | chr1_3:7078800-7078819 | Msa0100620:intron | 30.0% | |
| GTTTAGATGAAGGATTCTTT+GGG | - | chr1_3:7078810-7078829 | Msa0100620:intron | 30.0% | |
| GAACTCTATGCTATATAACA+AGG | - | chr1_3:7078832-7078851 | Msa0100620:intron | 30.0% | |
| !! | AAATAATGGGTCTAATTGAG+TGG | - | chr1_3:7078948-7078967 | Msa0100620:CDS | 30.0% |
| TCTTGAAAGATAGCTAAGTA+TGG | + | chr1_3:7079052-7079071 | None:intergenic | 30.0% | |
| ! | GTACTTACCCTTATCAGTTT+TGG | - | chr1_3:7077732-7077751 | Msa0100620:CDS | 35.0% |
| GAAACGATCCAAAACTGATA+AGG | + | chr1_3:7077743-7077762 | None:intergenic | 35.0% | |
| !!! | ATCAGTTTTGGATCGTTTCA+TGG | - | chr1_3:7077744-7077763 | Msa0100620:CDS | 35.0% |
| GGAGAAAAACCATATTAGGA+TGG | - | chr1_3:7077765-7077784 | Msa0100620:CDS | 35.0% | |
| GTGTACTATTACCAAACTTC+AGG | - | chr1_3:7077787-7077806 | Msa0100620:CDS | 35.0% | |
| AGGCTGTTAAGAGATGATAT+AGG | - | chr1_3:7077892-7077911 | Msa0100620:CDS | 35.0% | |
| AAGATCAAATGCAATGATGC+TGG | - | chr1_3:7077922-7077941 | Msa0100620:CDS | 35.0% | |
| TCAAACCTGGACATAAAAAG+TGG | + | chr1_3:7078070-7078089 | None:intergenic | 35.0% | |
| CAGTACAGAAAATTCAAACC+TGG | + | chr1_3:7078083-7078102 | None:intergenic | 35.0% | |
| CAACAAAATTCATGAAGGCT+TGG | - | chr1_3:7078423-7078442 | Msa0100620:CDS | 35.0% | |
| !! | TTGTTTTGTGGTCTTTGATG+AGG | + | chr1_3:7078503-7078522 | None:intergenic | 35.0% |
| ATATACAAGCCTGAACCATT+TGG | + | chr1_3:7078640-7078659 | None:intergenic | 35.0% | |
| TGTTGACATGTCCCTATATT+TGG | - | chr1_3:7078769-7078788 | Msa0100620:intron | 35.0% | |
| GGTTTAGATGAAGGATTCTT+TGG | - | chr1_3:7078809-7078828 | Msa0100620:intron | 35.0% | |
| AATTCATCAGCAATGACGAA+CGG | - | chr1_3:7078989-7079008 | Msa0100620:CDS | 35.0% | |
| TATTACATTGAGCCAGTGTT+TGG | - | chr1_3:7079097-7079116 | Msa0100620:CDS | 35.0% | |
| TCTTCCAACATCAAATGATG+TGG | - | chr1_3:7079138-7079157 | Msa0100620:CDS | 35.0% | |
| CTTCCAACATCAAATGATGT+GGG | - | chr1_3:7079139-7079158 | Msa0100620:CDS | 35.0% | |
| ! | GTACTTACCCTTATCAGTTT+TGG | - | chr1_3:7077732-7077751 | Msa0100620:CDS | 35.0% |
| GAAACGATCCAAAACTGATA+AGG | + | chr1_3:7077743-7077762 | None:intergenic | 35.0% | |
| !!! | ATCAGTTTTGGATCGTTTCA+TGG | - | chr1_3:7077744-7077763 | Msa0100620:CDS | 35.0% |
| GGAGAAAAACCATATTAGGA+TGG | - | chr1_3:7077765-7077784 | Msa0100620:CDS | 35.0% | |
| GTGTACTATTACCAAACTTC+AGG | - | chr1_3:7077787-7077806 | Msa0100620:CDS | 35.0% | |
| AGGCTGTTAAGAGATGATAT+AGG | - | chr1_3:7077892-7077911 | Msa0100620:CDS | 35.0% | |
| AAGATCAAATGCAATGATGC+TGG | - | chr1_3:7077922-7077941 | Msa0100620:CDS | 35.0% | |
| TCAAACCTGGACATAAAAAG+TGG | + | chr1_3:7078070-7078089 | None:intergenic | 35.0% | |
| CAGTACAGAAAATTCAAACC+TGG | + | chr1_3:7078083-7078102 | None:intergenic | 35.0% | |
| CAACAAAATTCATGAAGGCT+TGG | - | chr1_3:7078423-7078442 | Msa0100620:CDS | 35.0% | |
| !! | TTGTTTTGTGGTCTTTGATG+AGG | + | chr1_3:7078503-7078522 | None:intergenic | 35.0% |
| ATATACAAGCCTGAACCATT+TGG | + | chr1_3:7078640-7078659 | None:intergenic | 35.0% | |
| TGTTGACATGTCCCTATATT+TGG | - | chr1_3:7078769-7078788 | Msa0100620:intron | 35.0% | |
| GGTTTAGATGAAGGATTCTT+TGG | - | chr1_3:7078809-7078828 | Msa0100620:intron | 35.0% | |
| AATTCATCAGCAATGACGAA+CGG | - | chr1_3:7078989-7079008 | Msa0100620:CDS | 35.0% | |
| TATTACATTGAGCCAGTGTT+TGG | - | chr1_3:7079097-7079116 | Msa0100620:CDS | 35.0% | |
| TCTTCCAACATCAAATGATG+TGG | - | chr1_3:7079138-7079157 | Msa0100620:CDS | 35.0% | |
| CTTCCAACATCAAATGATGT+GGG | - | chr1_3:7079139-7079158 | Msa0100620:CDS | 35.0% | |
| AGCACAAAAGCAATTGAACC+AGG | - | chr1_3:7077706-7077725 | Msa0100620:CDS | 40.0% | |
| GATAAGGGTAAGTACTTTCC+TGG | + | chr1_3:7077727-7077746 | None:intergenic | 40.0% | |
| CAAAGTCTCTCTCAACTTCT+TGG | + | chr1_3:7077836-7077855 | None:intergenic | 40.0% | |
| AGTCATTTCCCTATAGTGAC+TGG | - | chr1_3:7077868-7077887 | Msa0100620:CDS | 40.0% | |
| ATTTCCCTATAGTGACTGGA+AGG | - | chr1_3:7077872-7077891 | Msa0100620:CDS | 40.0% | |
| ! | CAATGATGCTGGTGTTAGAA+TGG | - | chr1_3:7077933-7077952 | Msa0100620:CDS | 40.0% |
| !!! | TTGGTCCACTTTTTATGTCC+AGG | - | chr1_3:7078062-7078081 | Msa0100620:CDS | 40.0% |
| CAGCTGACTGAATTTGAAGA+AGG | - | chr1_3:7078347-7078366 | Msa0100620:CDS | 40.0% | |
| CTGACTGAATTTGAAGAAGG+TGG | - | chr1_3:7078350-7078369 | Msa0100620:CDS | 40.0% | |
| !! | GAAGAAGGTGGATTAGCAAT+TGG | - | chr1_3:7078362-7078381 | Msa0100620:CDS | 40.0% |
| TGAGGTAAAGGGTGGAATAT+TGG | + | chr1_3:7078485-7078504 | None:intergenic | 40.0% | |
| GTGGTCTTTGATGAGGTAAA+GGG | + | chr1_3:7078496-7078515 | None:intergenic | 40.0% | |
| TGTGGTCTTTGATGAGGTAA+AGG | + | chr1_3:7078497-7078516 | None:intergenic | 40.0% | |
| GTTTGAGAAGCCCATAGAAA+TGG | + | chr1_3:7078618-7078637 | None:intergenic | 40.0% | |
| TATGGGCTTCTCAAACCAAA+TGG | - | chr1_3:7078622-7078641 | Msa0100620:intron | 40.0% | |
| CTTCTCAAACCAAATGGTTC+AGG | - | chr1_3:7078628-7078647 | Msa0100620:intron | 40.0% | |
| GCTTAATGAATCATTGGGCT+GGG | + | chr1_3:7078669-7078688 | None:intergenic | 40.0% | |
| GTCGGGCTTAATGAATCATT+GGG | + | chr1_3:7078674-7078693 | None:intergenic | 40.0% | |
| TGTCGGGCTTAATGAATCAT+TGG | + | chr1_3:7078675-7078694 | None:intergenic | 40.0% | |
| CAAATTTCCACAAGCTACCA+AGG | - | chr1_3:7078889-7078908 | Msa0100620:CDS | 40.0% | |
| TACAACATTCCTTATGGCCT+TGG | + | chr1_3:7078909-7078928 | None:intergenic | 40.0% | |
| AATGACGAACGGTCATGATT+TGG | - | chr1_3:7079000-7079019 | Msa0100620:CDS | 40.0% | |
| TCAAATGATGTGGGTCCATT+AGG | - | chr1_3:7079148-7079167 | Msa0100620:CDS | 40.0% | |
| AATGGTGACACTTCAAGAAG+AGG | - | chr1_3:7079180-7079199 | Msa0100620:CDS | 40.0% | |
| AGCACAAAAGCAATTGAACC+AGG | - | chr1_3:7077706-7077725 | Msa0100620:CDS | 40.0% | |
| GATAAGGGTAAGTACTTTCC+TGG | + | chr1_3:7077727-7077746 | None:intergenic | 40.0% | |
| CAAAGTCTCTCTCAACTTCT+TGG | + | chr1_3:7077836-7077855 | None:intergenic | 40.0% | |
| AGTCATTTCCCTATAGTGAC+TGG | - | chr1_3:7077868-7077887 | Msa0100620:CDS | 40.0% | |
| ATTTCCCTATAGTGACTGGA+AGG | - | chr1_3:7077872-7077891 | Msa0100620:CDS | 40.0% | |
| ! | CAATGATGCTGGTGTTAGAA+TGG | - | chr1_3:7077933-7077952 | Msa0100620:CDS | 40.0% |
| !!! | TTGGTCCACTTTTTATGTCC+AGG | - | chr1_3:7078062-7078081 | Msa0100620:CDS | 40.0% |
| CAGCTGACTGAATTTGAAGA+AGG | - | chr1_3:7078347-7078366 | Msa0100620:CDS | 40.0% | |
| CTGACTGAATTTGAAGAAGG+TGG | - | chr1_3:7078350-7078369 | Msa0100620:CDS | 40.0% | |
| !! | GAAGAAGGTGGATTAGCAAT+TGG | - | chr1_3:7078362-7078381 | Msa0100620:CDS | 40.0% |
| TGAGGTAAAGGGTGGAATAT+TGG | + | chr1_3:7078485-7078504 | None:intergenic | 40.0% | |
| GTGGTCTTTGATGAGGTAAA+GGG | + | chr1_3:7078496-7078515 | None:intergenic | 40.0% | |
| TGTGGTCTTTGATGAGGTAA+AGG | + | chr1_3:7078497-7078516 | None:intergenic | 40.0% | |
| GTTTGAGAAGCCCATAGAAA+TGG | + | chr1_3:7078618-7078637 | None:intergenic | 40.0% | |
| TATGGGCTTCTCAAACCAAA+TGG | - | chr1_3:7078622-7078641 | Msa0100620:intron | 40.0% | |
| CTTCTCAAACCAAATGGTTC+AGG | - | chr1_3:7078628-7078647 | Msa0100620:intron | 40.0% | |
| GCTTAATGAATCATTGGGCT+GGG | + | chr1_3:7078669-7078688 | None:intergenic | 40.0% | |
| GTCGGGCTTAATGAATCATT+GGG | + | chr1_3:7078674-7078693 | None:intergenic | 40.0% | |
| TGTCGGGCTTAATGAATCAT+TGG | + | chr1_3:7078675-7078694 | None:intergenic | 40.0% | |
| CAAATTTCCACAAGCTACCA+AGG | - | chr1_3:7078889-7078908 | Msa0100620:CDS | 40.0% | |
| TACAACATTCCTTATGGCCT+TGG | + | chr1_3:7078909-7078928 | None:intergenic | 40.0% | |
| AATGACGAACGGTCATGATT+TGG | - | chr1_3:7079000-7079019 | Msa0100620:CDS | 40.0% | |
| TCAAATGATGTGGGTCCATT+AGG | - | chr1_3:7079148-7079167 | Msa0100620:CDS | 40.0% | |
| AATGGTGACACTTCAAGAAG+AGG | - | chr1_3:7079180-7079199 | Msa0100620:CDS | 40.0% | |
| ! | GCTCTAAGTCTCCTGAAGTT+TGG | + | chr1_3:7077801-7077820 | None:intergenic | 45.0% |
| ACTTCAGGAGACTTAGAGCT+TGG | - | chr1_3:7077802-7077821 | Msa0100620:CDS | 45.0% | |
| ACAGCCTTCCAGTCACTATA+GGG | + | chr1_3:7077879-7077898 | None:intergenic | 45.0% | |
| AACAGCCTTCCAGTCACTAT+AGG | + | chr1_3:7077880-7077899 | None:intergenic | 45.0% | |
| ! | TGCTGGTGTTAGAATGGTTG+AGG | - | chr1_3:7077939-7077958 | Msa0100620:CDS | 45.0% |
| ATGGTTGAGGCAAAAGCCAA+AGG | - | chr1_3:7077952-7077971 | Msa0100620:CDS | 45.0% | |
| GCTTGGGCTGACATTTCATT+AGG | - | chr1_3:7078440-7078459 | Msa0100620:CDS | 45.0% | |
| GGTAAAGGGTGGAATATTGG+AGG | + | chr1_3:7078482-7078501 | None:intergenic | 45.0% | |
| GTCTTTGATGAGGTAAAGGG+TGG | + | chr1_3:7078493-7078512 | None:intergenic | 45.0% | |
| GGTTCAGGCTTGTATATCCA+TGG | - | chr1_3:7078643-7078662 | Msa0100620:intron | 45.0% | |
| GGCTTAATGAATCATTGGGC+TGG | + | chr1_3:7078670-7078689 | None:intergenic | 45.0% | |
| !! | CTTCAAAAGGTGTTGGTGTC+GGG | + | chr1_3:7078691-7078710 | None:intergenic | 45.0% |
| !! | GCTTCAAAAGGTGTTGGTGT+CGG | + | chr1_3:7078692-7078711 | None:intergenic | 45.0% |
| ATTGAGCCAGTGTTTGGAGA+AGG | - | chr1_3:7079103-7079122 | Msa0100620:CDS | 45.0% | |
| ACATGTCCTTCTCCAAACAC+TGG | + | chr1_3:7079112-7079131 | None:intergenic | 45.0% | |
| GGACCCACATCATTTGATGT+TGG | + | chr1_3:7079145-7079164 | None:intergenic | 45.0% | |
| ATGATGTGGGTCCATTAGGA+AGG | - | chr1_3:7079152-7079171 | Msa0100620:CDS | 45.0% | |
| TGATGTGGGTCCATTAGGAA+GGG | - | chr1_3:7079153-7079172 | Msa0100620:CDS | 45.0% | |
| TCCATTAGGAAGGGTGGTAA+TGG | - | chr1_3:7079162-7079181 | Msa0100620:CDS | 45.0% | |
| ACCATTACCACCCTTCCTAA+TGG | + | chr1_3:7079166-7079185 | None:intergenic | 45.0% | |
| ! | GCTCTAAGTCTCCTGAAGTT+TGG | + | chr1_3:7077801-7077820 | None:intergenic | 45.0% |
| ACTTCAGGAGACTTAGAGCT+TGG | - | chr1_3:7077802-7077821 | Msa0100620:CDS | 45.0% | |
| ACAGCCTTCCAGTCACTATA+GGG | + | chr1_3:7077879-7077898 | None:intergenic | 45.0% | |
| AACAGCCTTCCAGTCACTAT+AGG | + | chr1_3:7077880-7077899 | None:intergenic | 45.0% | |
| ! | TGCTGGTGTTAGAATGGTTG+AGG | - | chr1_3:7077939-7077958 | Msa0100620:CDS | 45.0% |
| ATGGTTGAGGCAAAAGCCAA+AGG | - | chr1_3:7077952-7077971 | Msa0100620:CDS | 45.0% | |
| GCTTGGGCTGACATTTCATT+AGG | - | chr1_3:7078440-7078459 | Msa0100620:CDS | 45.0% | |
| GGTAAAGGGTGGAATATTGG+AGG | + | chr1_3:7078482-7078501 | None:intergenic | 45.0% | |
| GTCTTTGATGAGGTAAAGGG+TGG | + | chr1_3:7078493-7078512 | None:intergenic | 45.0% | |
| GGTTCAGGCTTGTATATCCA+TGG | - | chr1_3:7078643-7078662 | Msa0100620:intron | 45.0% | |
| GGCTTAATGAATCATTGGGC+TGG | + | chr1_3:7078670-7078689 | None:intergenic | 45.0% | |
| !! | CTTCAAAAGGTGTTGGTGTC+GGG | + | chr1_3:7078691-7078710 | None:intergenic | 45.0% |
| !! | GCTTCAAAAGGTGTTGGTGT+CGG | + | chr1_3:7078692-7078711 | None:intergenic | 45.0% |
| ATTGAGCCAGTGTTTGGAGA+AGG | - | chr1_3:7079103-7079122 | Msa0100620:CDS | 45.0% | |
| ACATGTCCTTCTCCAAACAC+TGG | + | chr1_3:7079112-7079131 | None:intergenic | 45.0% | |
| GGACCCACATCATTTGATGT+TGG | + | chr1_3:7079145-7079164 | None:intergenic | 45.0% | |
| ATGATGTGGGTCCATTAGGA+AGG | - | chr1_3:7079152-7079171 | Msa0100620:CDS | 45.0% | |
| TGATGTGGGTCCATTAGGAA+GGG | - | chr1_3:7079153-7079172 | Msa0100620:CDS | 45.0% | |
| TCCATTAGGAAGGGTGGTAA+TGG | - | chr1_3:7079162-7079181 | Msa0100620:CDS | 45.0% | |
| ACCATTACCACCCTTCCTAA+TGG | + | chr1_3:7079166-7079185 | None:intergenic | 45.0% | |
| CCACTCTTCGACACTTCCTT+TGG | + | chr1_3:7077971-7077990 | None:intergenic | 50.0% | |
| !! | CCAAAGGAAGTGTCGAAGAG+TGG | - | chr1_3:7077968-7077987 | Msa0100620:CDS | 50.0% |
| ACGAAGCGTGGATAGGGAAA+AGG | - | chr1_3:7077993-7078012 | Msa0100620:CDS | 50.0% | |
| CCAAGAGATGAGTGCAGCTT+AGG | + | chr1_3:7078388-7078407 | None:intergenic | 50.0% | |
| CCTAAGCTGCACTCATCTCT+TGG | - | chr1_3:7078385-7078404 | Msa0100620:CDS | 50.0% | |
| ! | GCTAGGGCTTCAAAAGGTGT+TGG | + | chr1_3:7078698-7078717 | None:intergenic | 50.0% |
| !!! | ACACCTTTTGAAGCCCTAGC+AGG | - | chr1_3:7078698-7078717 | Msa0100620:intron | 50.0% |
| !!! | CACCTTTTGAAGCCCTAGCA+GGG | - | chr1_3:7078699-7078718 | Msa0100620:intron | 50.0% |
| AACCCTGCTAGGGCTTCAAA+AGG | + | chr1_3:7078704-7078723 | None:intergenic | 50.0% | |
| ! | AAGCCCTAGCAGGGTTGTTT+TGG | - | chr1_3:7078708-7078727 | Msa0100620:intron | 50.0% |
| !! | AGCCCTAGCAGGGTTGTTTT+GGG | - | chr1_3:7078709-7078728 | Msa0100620:intron | 50.0% |
| GACCCAAAACAACCCTGCTA+GGG | + | chr1_3:7078714-7078733 | None:intergenic | 50.0% | |
| TGACCCAAAACAACCCTGCT+AGG | + | chr1_3:7078715-7078734 | None:intergenic | 50.0% | |
| ! | CTTATGGCCTTGGTAGCTTG+TGG | + | chr1_3:7078899-7078918 | None:intergenic | 50.0% |
| CACAAGCTACCAAGGCCATA+AGG | - | chr1_3:7078897-7078916 | Msa0100620:CDS | 50.0% | |
| GGTGACACTTCAAGAAGAGG+AGG | - | chr1_3:7079183-7079202 | Msa0100620:CDS | 50.0% | |
| CCACTCTTCGACACTTCCTT+TGG | + | chr1_3:7077971-7077990 | None:intergenic | 50.0% | |
| !! | CCAAAGGAAGTGTCGAAGAG+TGG | - | chr1_3:7077968-7077987 | Msa0100620:CDS | 50.0% |
| ACGAAGCGTGGATAGGGAAA+AGG | - | chr1_3:7077993-7078012 | Msa0100620:CDS | 50.0% | |
| CCAAGAGATGAGTGCAGCTT+AGG | + | chr1_3:7078388-7078407 | None:intergenic | 50.0% | |
| CCTAAGCTGCACTCATCTCT+TGG | - | chr1_3:7078385-7078404 | Msa0100620:CDS | 50.0% | |
| ! | GCTAGGGCTTCAAAAGGTGT+TGG | + | chr1_3:7078698-7078717 | None:intergenic | 50.0% |
| !!! | ACACCTTTTGAAGCCCTAGC+AGG | - | chr1_3:7078698-7078717 | Msa0100620:intron | 50.0% |
| !!! | CACCTTTTGAAGCCCTAGCA+GGG | - | chr1_3:7078699-7078718 | Msa0100620:intron | 50.0% |
| AACCCTGCTAGGGCTTCAAA+AGG | + | chr1_3:7078704-7078723 | None:intergenic | 50.0% | |
| ! | AAGCCCTAGCAGGGTTGTTT+TGG | - | chr1_3:7078708-7078727 | Msa0100620:intron | 50.0% |
| !! | AGCCCTAGCAGGGTTGTTTT+GGG | - | chr1_3:7078709-7078728 | Msa0100620:intron | 50.0% |
| GACCCAAAACAACCCTGCTA+GGG | + | chr1_3:7078714-7078733 | None:intergenic | 50.0% | |
| TGACCCAAAACAACCCTGCT+AGG | + | chr1_3:7078715-7078734 | None:intergenic | 50.0% | |
| ! | CTTATGGCCTTGGTAGCTTG+TGG | + | chr1_3:7078899-7078918 | None:intergenic | 50.0% |
| CACAAGCTACCAAGGCCATA+AGG | - | chr1_3:7078897-7078916 | Msa0100620:CDS | 50.0% | |
| GGTGACACTTCAAGAAGAGG+AGG | - | chr1_3:7079183-7079202 | Msa0100620:CDS | 50.0% | |
| AGTGGCTACGAAGCGTGGAT+AGG | - | chr1_3:7077986-7078005 | Msa0100620:CDS | 55.0% | |
| GTGGCTACGAAGCGTGGATA+GGG | - | chr1_3:7077987-7078006 | Msa0100620:CDS | 55.0% | |
| ! | TGAATCATTGGGCTGGGCCA+TGG | + | chr1_3:7078663-7078682 | None:intergenic | 55.0% |
| TGTGGGTCCATTAGGAAGGG+TGG | - | chr1_3:7079156-7079175 | Msa0100620:CDS | 55.0% | |
| AGTGGCTACGAAGCGTGGAT+AGG | - | chr1_3:7077986-7078005 | Msa0100620:CDS | 55.0% | |
| GTGGCTACGAAGCGTGGATA+GGG | - | chr1_3:7077987-7078006 | Msa0100620:CDS | 55.0% | |
| ! | TGAATCATTGGGCTGGGCCA+TGG | + | chr1_3:7078663-7078682 | None:intergenic | 55.0% |
| TGTGGGTCCATTAGGAAGGG+TGG | - | chr1_3:7079156-7079175 | Msa0100620:CDS | 55.0% | |
| CGAAGAGTGGCTACGAAGCG+TGG | - | chr1_3:7077981-7078000 | Msa0100620:CDS | 60.0% | |
| CGAAGAGTGGCTACGAAGCG+TGG | - | chr1_3:7077981-7078000 | Msa0100620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7077664 | 7079267 | 7077664 | ID=Msa0100620;Name=Msa0100620 |
| chr1_3 | mRNA | 7077664 | 7079267 | 7077664 | ID=Msa0100620-mRNA-1;Parent=Msa0100620;Name=Msa0100620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|445 |
| chr1_3 | exon | 7078848 | 7079267 | 7078848 | ID=Msa0100620-mRNA-1:exon:2728;Parent=Msa0100620-mRNA-1 |
| chr1_3 | exon | 7077664 | 7078581 | 7077664 | ID=Msa0100620-mRNA-1:exon:2727;Parent=Msa0100620-mRNA-1 |
| chr1_3 | CDS | 7078848 | 7079267 | 7078848 | ID=Msa0100620-mRNA-1:cds;Parent=Msa0100620-mRNA-1 |
| chr1_3 | CDS | 7077664 | 7078581 | 7077664 | ID=Msa0100620-mRNA-1:cds;Parent=Msa0100620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
