AlfalfaGEDB | Msa0101330

M. sativa cultivar zhongmu-4 / Msa0101330

KEGG: -
GO: -
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101330	XP_013466044.1	96.290	620	21	1	22	641	17	634	0.0	1228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101330	sp\|O64825\|LYK4_ARATH	38.825	613	323	14	30	622	22	602	2.26e-120	374

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101330	A0A072VF56	96.290	620	21	1	22	641	17	634	0.0	1228

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050960	Msa0101330	0.849254	3.638260e-60	-8.615850e-47
Msa0101330	Msa0145690	0.858268	9.260060e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101330	MtrunA17_Chr1g0154511	96.290	620	21	1	22	641	17	634	0.0	1228
Msa0101330	MtrunA17_Chr5g0403381	39.394	627	346	9	30	640	28	636	2.15e-135	410
Msa0101330	MtrunA17_Chr5g0439334	36.923	650	365	13	25	641	18	655	1.35e-124	383
Msa0101330	MtrunA17_Chr3g0119351	34.729	645	369	16	27	637	45	671	3.87e-106	336
Msa0101330	MtrunA17_Chr7g0248904	29.516	620	389	15	50	637	54	657	3.48e-77	259
Msa0101330	MtrunA17_Chr7g0248881	29.887	619	384	14	31	617	25	625	1.73e-74	252
Msa0101330	MtrunA17_Chr5g0403371	31.404	570	315	19	64	614	46	558	1.54e-67	231
Msa0101330	MtrunA17_Chr5g0418011	41.924	291	150	8	338	621	17	295	1.61e-66	220
Msa0101330	MtrunA17_Chr2g0289131	30.427	539	321	14	114	622	79	593	2.75e-62	218
Msa0101330	MtrunA17_Chr4g0028801	29.260	622	360	25	30	620	30	602	1.20e-61	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101330	AT2G23770.1	38.825	613	323	14	30	622	22	602	2.29e-121	374
Msa0101330	AT2G33580.1	34.139	662	361	20	29	639	25	662	1.41e-99	318
Msa0101330	AT3G21630.1	29.889	542	314	15	109	617	82	590	1.75e-57	205
Msa0101330	AT3G01840.1	26.572	636	359	23	42	620	34	618	2.53e-55	199
Msa0101330	AT1G15530.1	34.839	310	170	10	340	631	349	644	3.38e-48	179
Msa0101330	AT1G67720.1	34.451	328	196	7	301	617	557	876	1.39e-47	180
Msa0101330	AT4G29990.1	34.048	373	206	12	261	617	494	842	1.93e-47	179
Msa0101330	AT1G72300.1	37.124	299	162	9	344	626	795	1083	2.33e-47	180
Msa0101330	AT1G51940.1	34.884	301	175	6	339	620	328	626	1.15e-45	172
Msa0101330	AT5G53890.1	35.197	304	177	8	338	628	740	1036	1.97e-45	174

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Find 138 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATCTTTAAGGGAA+TGG	0.495872	1_3:-7928630	Msa0101330:CDS
AAAATGGATGTCTATGCCTT+TGG	0.406697	1_3:-7928313	Msa0101330:CDS
AAAGAGAATACAGATTGCTT+TGG	0.450936	1_3:-7928569	Msa0101330:CDS
AAAGCACAACAGAATTACTC+AGG	0.613030	1_3:-7929801	Msa0101330:CDS
AAAGGCATAGACATCCATTT+TGG	0.296150	1_3:+7928315	None:intergenic
AAATCCTACAACATGTGATG+TGG	0.577940	1_3:+7928384	None:intergenic
AACACACAGAACCAGCAGTG+AGG	0.735313	1_3:+7929041	None:intergenic
AACGAGCTAGCCAGAATCAA+CGG	0.575521	1_3:-7929612	Msa0101330:CDS
AACGGAGTTATAAGGTAGTG+TGG	0.572732	1_3:+7929668	None:intergenic
AAGAAGTCAATTTGCTGAAA+AGG	0.382262	1_3:-7928732	Msa0101330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCATTAAAATAGACCTG+TGG	+	chr1_3:7928042-7928061	None:intergenic	30.0%
GTTAAACACAACTTGATTCA+TGG	+	chr1_3:7928235-7928254	None:intergenic	30.0%
ACAATAACATCTTTACCAGA+TGG	+	chr1_3:7928533-7928552	None:intergenic	30.0%
TTAAACAAGAACAGTTCACA+GGG	+	chr1_3:7928556-7928575	None:intergenic	30.0%
GTTTGGACCCAATATATATT+TGG	+	chr1_3:7928603-7928622	None:intergenic	30.0%
ACTATGAAATATGTTGGGTT+TGG	+	chr1_3:7928620-7928639	None:intergenic	30.0%
AGAATATGTGAGTAAGTACT+TGG	+	chr1_3:7928789-7928808	None:intergenic	30.0%
ACTATAGTTGTTAAACTCAC+TGG	+	chr1_3:7928953-7928972	None:intergenic	30.0%
CTATCTTGTCTATGAATACA+TGG	-	chr1_3:7929444-7929463	Msa0101330:CDS	30.0%
GTCTATGAATACATGGAAAA+TGG	-	chr1_3:7929451-7929470	Msa0101330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	7927982	7930137	7927982	ID=Msa0101330;Name=Msa0101330
chr1_3	mRNA	7927982	7930137	7927982	ID=Msa0101330-mRNA-1;Parent=Msa0101330;Name=Msa0101330-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|641
chr1_3	exon	7930075	7930137	7930075	ID=Msa0101330-mRNA-1:exon:3140;Parent=Msa0101330-mRNA-1
chr1_3	exon	7927982	7929844	7927982	ID=Msa0101330-mRNA-1:exon:3139;Parent=Msa0101330-mRNA-1
chr1_3	CDS	7930075	7930137	7930075	ID=Msa0101330-mRNA-1:cds;Parent=Msa0101330-mRNA-1
chr1_3	CDS	7927982	7929844	7927982	ID=Msa0101330-mRNA-1:cds;Parent=Msa0101330-mRNA-1

Gene Sequence

>Msa0101330

ATGACCCAATTATATAATCCATCTACAAAAACAACTAACAGACCAAGGTACCAGAAACCACAGCATGCTTCATTCATCAAAAACAAAGCACAACAGAATTACTCAGGAAATTCAATACTCAGCTGCAAGAACAACGATGATGCGGGACCTTCATCGGCATTCCTTTACACCTGCAATGGCCTCAACAAATCATGCATGACCTATCTAACCTTCAAATCCACACTACCTTATAACTCCGTTTCCACAATTTCCAGCCTTACTTCATCAAACCCGAACGAGCTAGCCAGAATCAACGGCGCCACTTTGCTCACTGTTTTTCCATCTGGTAAAGATGTTATTGTCCCTGTGAACTGTTCTTGTTTAACCAATGATTATTACCAAGCTGAAACCAAATATATATTGGGTCCAAACCCAACATATTTCATAGTAGCAAACGACACGTTCCAGGGTTTGTCGACATGTGATTCTCTTATGCGTGCGAATCCGTATGGAGAACTTGATTTGCTTCGAGGAATGGAGTTGAATGTGCCACTCCGATGCGCTTGTCCAACATATCATCAGAAAACAAATGGCACCAAGTACTTACTCACATATTCTGTGACCTGGGGTGATAACATTTCAAATATTGCTACAAGATTCAATGTAGCAGTAGGTAATCTAATTGATGCCAATGGTTTTTCCACACAAACTGAACTCCTTTTTCCATTCACAACTGTTCTGATTCCTTTGGCAAGTGAACCAGTGAGTTTAACAACTATAGTTGCTAATGATCCACCAACCCCTCTCGGTTGCAGCTTCAAAAAGTGCAAGTCTAACACAAAAGTACTCCTTATTGCTTTAACCACCTCACTGCTGGTTCTGTGTGTTTTCTTGTTTGTGCTGTTTCTGATTTGGTTTCTACTCAGAAAGAGATCAGCGAGGTTTGTTAAGCAATGTATGCAAGTTAACAATAAAAATGTGGTGTTTTCAGAAGAGATCCGTGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAAGCAACTGAGAATTTTAGTTCAAAGAATAGAATCAAAGGTTCTTTATTTCGCGGCATATTCAACAATGGCAAGGAAGTGTTGGCTGTTAAAAGAATGAGAGGAGATGCTTCCAAAGAAGTCAATTTGCTGAAAAGGATCAATCATTTCAACTTGATAAAGCTGCAAGGTTACTGTGAAAACGATGCTTGCATCTATCTTGTCTATGAATACATGGAAAATGGATCTTTAAGGGAATGGCTTAGCAAGGATAGTTCCATTGAACACCAAAGTTGGGCAAAGAGAATACAGATTGCTTTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATAAACAGTGGAAACATTCTACTAAACAAAGATTTAAGGGCCAAGATAGCAAAATTTGCTCATGCTGAAGAATCAAAAAGGATGATAACTTCTGGTTCTCCCACATCACATGTTGTAGGATTTATGGGCTATTTGGCTCCTGAGTATCTGGAGGCACGGGTAGTCAGTACCAAAATGGATGTCTATGCCTTTGGAGTCGTGCTGTTGGAATTGATCACCGGCAATGATTCTATTACCCTACAAGATGGAAGAGAAGTGATGCTTTATGAAATCATACAAAACATCATTGGACAGGATAATGAAGAAGAGAAGGTGAGCTTGTTCATTGATCCTTGCCTCATCGAAAGCTGTAGGAAAGCCTGTGCACTGCAGCTAGTTAAACTGAGCCTAGCCTGCTTGATCCAAGAACCAGAAAGCAGACCAAACATTGAAGAGGTGGTCTCTAGCTTATTGAAAATACAGGCAAATGATATGCAACAGAGAATATCACCCAGCATCAATAAAAGTTTAAGCTTGGAGAGGTGA

Protein sequence

>Msa0101330

MTQLYNPSTKTTNRPRYQKPQHASFIKNKAQQNYSGNSILSCKNNDDAGPSSAFLYTCNGLNKSCMTYLTFKSTLPYNSVSTISSLTSSNPNELARINGATLLTVFPSGKDVIVPVNCSCLTNDYYQAETKYILGPNPTYFIVANDTFQGLSTCDSLMRANPYGELDLLRGMELNVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVAVGNLIDANGFSTQTELLFPFTTVLIPLASEPVSLTTIVANDPPTPLGCSFKKCKSNTKVLLIALTTSLLVLCVFLFVLFLIWFLLRKRSARFVKQCMQVNNKNVVFSEEIREEIAIIEHLSKVYSFEEIKEATENFSSKNRIKGSLFRGIFNNGKEVLAVKRMRGDASKEVNLLKRINHFNLIKLQGYCENDACIYLVYEYMENGSLREWLSKDSSIEHQSWAKRIQIALDIANGLQYLHNFTEPCYVHKDINSGNILLNKDLRAKIAKFAHAEESKRMITSGSPTSHVVGFMGYLAPEYLEARVVSTKMDVYAFGVVLLELITGNDSITLQDGREVMLYEIIQNIIGQDNEEEKVSLFIDPCLIESCRKACALQLVKLSLACLIQEPESRPNIEEVVSSLLKIQANDMQQRISPSINKSLSLER*