AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101970 MtrunA17_Chr1g0153441 98.347 968 16 0 1 968 1 968 0.0 1974
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101970 AT2G05170.1 76.674 956 197 6 1 954 1 932 0.0 1529

Find 250 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCACTGGACTTGGGTTT+AGG 0.165459 1_3:+8629343 Msa0101970:CDS
CTTGATGAGCGAGCCATTCC+TGG 0.202754 1_3:-8634415 None:intergenic
CAGAGTTTGAAGGACAATTA+TGG 0.226264 1_3:-8631233 None:intergenic
GATGAATCTGATTAATTTCC+GGG 0.239868 1_3:+8634319 Msa0101970:three_prime_UTR
TCTGAGGTTCTGAGAAAATA+TGG 0.241148 1_3:+8629990 Msa0101970:CDS
AGTTATAAGATAAATATTTA+AGG 0.243888 1_3:+8634576 Msa0101970:three_prime_UTR
TCTGTCATTGCTGAATATTT+TGG 0.257321 1_3:+8634142 Msa0101970:CDS
AGAAAAGTATCACTTCAATT+TGG 0.272835 1_3:-8634610 None:intergenic
AATCACTGGACTTGGGTTTA+GGG 0.273084 1_3:+8629344 Msa0101970:CDS
GACAAATCAACTTTATCTAT+TGG 0.273921 1_3:+8629864 Msa0101970:CDS
ACAAATCAACTTTATCTATT+GGG 0.277279 1_3:+8629865 Msa0101970:CDS
TCATCACCCTCATTCCCTTA+TGG 0.279998 1_3:+8630622 Msa0101970:CDS
ATCTATTGGGGAAAAGGATA+TGG 0.280398 1_3:+8629878 Msa0101970:CDS
GGATGAATCTGATTAATTTC+CGG 0.289826 1_3:+8634318 Msa0101970:three_prime_UTR
CTGCAACTAAACGACAATTT+AGG 0.297889 1_3:-8627789 None:intergenic
CTTTGGAGTTCTTAACTTGC+TGG 0.300273 1_3:-8634111 None:intergenic
TCTAAGACAGACCTATATTC+TGG 0.301900 1_3:-8634040 None:intergenic
CATGAACAGGAGTTAATAAT+TGG 0.303175 1_3:+8629597 Msa0101970:intron
CATTGCATGCTCATGGTAAT+TGG 0.305104 1_3:-8630318 None:intergenic
AGACTGGGTGATTCAGTTAA+AGG 0.309604 1_3:+8631094 Msa0101970:CDS
TGATCAAGGGTTTGCCTCCT+TGG 0.310759 1_3:-8629441 None:intergenic
CAGCAATAGTTCCATTGGTT+TGG 0.314895 1_3:-8630820 None:intergenic
TCATCTTGTTCTTCTTCCTC+TGG 0.326060 1_3:-8628020 None:intergenic
TAAATATTTAAGGCAATGTT+AGG 0.332104 1_3:+8634586 Msa0101970:three_prime_UTR
CTAAATTGTCGTTTAGTTGC+AGG 0.343394 1_3:+8627790 Msa0101970:five_prime_UTR
AGGTGAATCCTTGACCTTAT+TGG 0.343976 1_3:-8630663 None:intergenic
AGCAATAGTTCCATTGGTTT+GGG 0.348338 1_3:-8630819 None:intergenic
TATCACCCGTTTCAAGCTTC+AGG 0.352630 1_3:+8629290 Msa0101970:CDS
AAGGAGGGGATCCATCTCTT+TGG 0.360728 1_3:+8631113 Msa0101970:CDS
CTTTCCTCAATCACTGGACT+TGG 0.361446 1_3:+8629336 Msa0101970:CDS
AGAGTTTGAAGGACAATTAT+GGG 0.373061 1_3:-8631232 None:intergenic
CCGAGTGTGCCCCAGAATAT+AGG 0.376144 1_3:+8634029 Msa0101970:CDS
GATTAATTGCCACAGTATAT+AGG 0.376809 1_3:-8629932 None:intergenic
AACTTTATCTATTGGGGAAA+AGG 0.376852 1_3:+8629872 Msa0101970:CDS
CGCAATATCCCAACACAATC+AGG 0.377225 1_3:-8628984 None:intergenic
TGATGATAGCTTCTCCTTGA+AGG 0.378106 1_3:+8634553 Msa0101970:three_prime_UTR
CCTCACACTTTCAGTGATCA+AGG 0.379854 1_3:+8631270 Msa0101970:CDS
TTCTCATATGCTCTATGAAT+GGG 0.379887 1_3:+8629818 Msa0101970:CDS
CTCAAATATTTCGGTGAGCT+TGG 0.382396 1_3:+8631145 Msa0101970:CDS
CTACAACCTCACAAATTACT+TGG 0.388960 1_3:+8630127 Msa0101970:CDS
TTACCAGCAACGCAACTTCC+TGG 0.390746 1_3:+8628857 Msa0101970:intron
AAAAGTTGGTTTCTAAATGT+TGG 0.391120 1_3:+8634297 Msa0101970:three_prime_UTR
GGAAGGGGTAAAGTTGTAAC+TGG 0.392960 1_3:+8628095 Msa0101970:CDS
TCAGGCACAAAGCTGATTGC+TGG 0.394780 1_3:-8628911 None:intergenic
AAGATCTTGCTTGAAGATCT+TGG 0.395246 1_3:+8630380 Msa0101970:CDS
TTTATCTTATAACTCCTTCA+AGG 0.395675 1_3:-8634567 None:intergenic
TGAAAAGATGAAACTCTATA+AGG 0.401719 1_3:+8631012 Msa0101970:CDS
AGTGCACAGCAGGCAGGTCT+AGG 0.403112 1_3:-8633949 None:intergenic
CCAATACTACTCATAGCTAT+TGG 0.404601 1_3:+8629216 Msa0101970:CDS
AGACGATTCAGATTCTCATT+AGG 0.405836 1_3:+8630507 Msa0101970:CDS
AGGAGGGGATCCATCTCTTT+GGG 0.410282 1_3:+8631114 Msa0101970:CDS
TTGATGGACGTGGTCCTTGT+TGG 0.414039 1_3:+8629649 Msa0101970:CDS
GCGGATGTACTCAAATATTT+CGG 0.416309 1_3:+8631136 Msa0101970:CDS
CCTATATTCTGGGGCACACT+CGG 0.416345 1_3:-8634029 None:intergenic
GCTCAGTACATAAATACTAT+TGG 0.417530 1_3:+8630053 Msa0101970:CDS
TATCGCCAAGGCACCGCAAA+TGG 0.418739 1_3:-8633991 None:intergenic
TTAAAAGTGAAGACAGCATC+GGG 0.419487 1_3:+8630249 Msa0101970:CDS
AATGACAGAAAACCCATCTT+TGG 0.421553 1_3:-8634128 None:intergenic
GGAAAGAGGTTCAAGATCTT+AGG 0.422194 1_3:+8633876 Msa0101970:CDS
CCAATAGCTATGAGTAGTAT+TGG 0.424303 1_3:-8629216 None:intergenic
GAAAAGTTCCGAAAAGGAAA+AGG 0.428827 1_3:+8630847 Msa0101970:CDS
TCGACGTGGAAACAGCAATC+AGG 0.429305 1_3:+8630282 Msa0101970:CDS
TTAGAAGGATTTGAAGGTAC+TGG 0.430149 1_3:+8634498 Msa0101970:three_prime_UTR
CTGAGGTTCTGAGAAAATAT+GGG 0.432325 1_3:+8629991 Msa0101970:CDS
TCCACTCCGGATCTCAGATC+TGG 0.433777 1_3:+8634196 Msa0101970:CDS
GCTCAAATTGTTATTTGTCA+TGG 0.434682 1_3:-8634711 None:intergenic
GCAACTTCCTGGTAACGATT+GGG 0.436621 1_3:+8628868 Msa0101970:CDS
TGGTCCTTGTTGGGCTTTCG+AGG 0.436966 1_3:+8629659 Msa0101970:CDS
TTCCACCTGAAGCTTGAAAC+GGG 0.437573 1_3:-8629295 None:intergenic
AGAGCAAAATTCTAAGAGTC+AGG 0.439155 1_3:+8634078 Msa0101970:CDS
TCATTCCATTTGCGGTGCCT+TGG 0.440897 1_3:+8633986 Msa0101970:CDS
CTGATCAGCAATAGTTCCAT+TGG 0.444085 1_3:-8630825 None:intergenic
GGGATGACAATAAAGGAGTA+TGG 0.445490 1_3:+8630455 Msa0101970:CDS
TAAAGTGGATGTTCTGTCTC+TGG 0.445656 1_3:-8630923 None:intergenic
CTCAAATTGTTATTTGTCAT+GGG 0.447325 1_3:-8634710 None:intergenic
AATTGCATGCTGCAAAAGAC+TGG 0.448531 1_3:+8631078 Msa0101970:CDS
TGCAATGTACGTTGCAAAGA+AGG 0.449033 1_3:+8630334 Msa0101970:CDS
GAACTTCCGCCATTGATACA+TGG 0.450655 1_3:-8627958 None:intergenic
CGCAACTTCCTGGTAACGAT+TGG 0.450703 1_3:+8628867 Msa0101970:CDS
CTAAGACAGACCTATATTCT+GGG 0.451299 1_3:-8634039 None:intergenic
TGGATATATACAACTCTAAG+AGG 0.457967 1_3:-8630709 None:intergenic
CGTCTTCCCCAATCGTTACC+AGG 0.459623 1_3:-8628875 None:intergenic
TGATGGACGTGGTCCTTGTT+GGG 0.460881 1_3:+8629650 Msa0101970:CDS
TGAAGGAAAGTTCAATTCGT+TGG 0.464411 1_3:-8630729 None:intergenic
ACCCTTGATCAGATTGGATC+TGG 0.464992 1_3:+8629453 Msa0101970:CDS
GGTCAAGGATTCACCTGCTC+AGG 0.467389 1_3:+8630670 Msa0101970:CDS
TGGTAGTTATGAAGAGGCCT+TGG 0.468629 1_3:+8630400 Msa0101970:CDS
TTCTAGTCTTGAATCAAGTC+AGG 0.470104 1_3:+8630430 Msa0101970:CDS
ATGTACGTTGCAAAGAAGGC+TGG 0.470345 1_3:+8630338 Msa0101970:CDS
CGGCGAGTCCTGATTGTGTT+GGG 0.472454 1_3:+8628976 Msa0101970:CDS
TTGTTAATCTCCACCTGAGC+AGG 0.474815 1_3:-8630683 None:intergenic
AAATGAATTCATTCAAAGAT+GGG 0.475672 1_3:+8630975 Msa0101970:CDS
GTTATTGCAGATCAAAGAAC+AGG 0.476400 1_3:+8629726 Msa0101970:CDS
GCATGCACTCATTCCATTTG+CGG 0.477204 1_3:+8633978 Msa0101970:CDS
AGGCAAACCCTTGATCAGAT+TGG 0.477845 1_3:+8629447 Msa0101970:CDS
CAAGTTAAGAACTCCAAAGA+TGG 0.478433 1_3:+8634115 Msa0101970:CDS
TCGAGTGTTGTTCGAGTGGA+AGG 0.478736 1_3:+8628078 Msa0101970:CDS
ACGATAACAAGCCGTACTAA+TGG 0.479354 1_3:-8634354 None:intergenic
TCAGGCAGGGATGACAATAA+AGG 0.481244 1_3:+8630448 Msa0101970:CDS
TTTCTCATATGCTCTATGAA+TGG 0.483651 1_3:+8629817 Msa0101970:CDS
GAAATGAATTCATTCAAAGA+TGG 0.484480 1_3:+8630974 Msa0101970:CDS
CCGTCTTGAAAGGCGTGAAA+AGG 0.484924 1_3:+8630871 Msa0101970:CDS
CAGGCACAAAGCTGATTGCT+GGG 0.486277 1_3:-8628910 None:intergenic
GAAAACAAGCTCACAGAACT+CGG 0.486413 1_3:-8629402 None:intergenic
CACCAGATCCAATCTGATCA+AGG 0.488583 1_3:-8629455 None:intergenic
TCAAGGGTTTGCCTCCTTGG+TGG 0.489921 1_3:-8629438 None:intergenic
CATTGCTCGGAAGCTTGAGC+AGG 0.494654 1_3:+8631297 Msa0101970:CDS
TTTAATAGCCCACAGTGCTC+TGG 0.496214 1_3:+8629785 Msa0101970:CDS
TCGCGGCGGCCATGTATCAA+TGG 0.497073 1_3:+8627949 Msa0101970:exon
ATGCACATGAAGTGCACAGC+AGG 0.497823 1_3:-8633959 None:intergenic
AAAACACTTTCCTCAATCAC+TGG 0.498585 1_3:+8629330 Msa0101970:CDS
TTTCAACTTCTCCATTAGTA+CGG 0.499735 1_3:+8634343 Msa0101970:three_prime_UTR
AAAATGCTGAGAAAATCAAC+AGG 0.501120 1_3:-8630596 None:intergenic
TTTCCACCTGAAGCTTGAAA+CGG 0.502073 1_3:-8629296 None:intergenic
AAACCCAAGTCCAGTGATTG+AGG 0.506411 1_3:-8629340 None:intergenic
TTCAGTATCACAGTCTAATG+AGG 0.507019 1_3:+8630748 Msa0101970:CDS
ATTTACAACGTGATCGATTG+AGG 0.507741 1_3:-8627846 None:intergenic
GCTAAATCAACATCATAAAG+TGG 0.508250 1_3:-8630938 None:intergenic
TTAAAAGTGTAATATTATGA+CGG 0.510905 1_3:+8634643 Msa0101970:three_prime_UTR
AGAAAATCCATAAGGGAATG+AGG 0.512488 1_3:-8630629 None:intergenic
CTATATTCTGGGGCACACTC+GGG 0.512624 1_3:-8634028 None:intergenic
GATCTGCAATAACACACAAA+AGG 0.515758 1_3:-8629716 None:intergenic
AGTAATCGCTTGCTATATGC+AGG 0.516062 1_3:+8631036 Msa0101970:CDS
ACCGTTTGCTTCTTCGATCG+AGG 0.516521 1_3:+8628131 Msa0101970:CDS
CTTGGAAAAGCTACATGAGA+AGG 0.516604 1_3:+8630145 Msa0101970:CDS
TCTCTTTATTCAACAACTCA+AGG 0.517822 1_3:+8628196 Msa0101970:CDS
GACAAAAGAGGACGTTCAAA+TGG 0.519441 1_3:+8630548 Msa0101970:CDS
TCACTGAAAGTGTGAGGCAA+GGG 0.519511 1_3:-8631264 None:intergenic
CAAATCAACTTTATCTATTG+GGG 0.520833 1_3:+8629866 Msa0101970:CDS
TGATCAGAAAAGTTCCGAAA+AGG 0.523848 1_3:+8630841 Msa0101970:CDS
TTGCAGGCAGCTTCTTCCAA+TGG 0.525299 1_3:+8627806 Msa0101970:five_prime_UTR
TGAAAGAGAAAGAGAAGGAG+AGG 0.526239 1_3:+8628051 Msa0101970:CDS
GGTTCAATTTACTGCATCAA+AGG 0.528160 1_3:+8629249 Msa0101970:CDS
TCATCTAGCAGTGGCTTCTG+AGG 0.529072 1_3:+8634226 Msa0101970:CDS
ATCTTTAACCAGAGCACTGT+GGG 0.529432 1_3:-8629793 None:intergenic
AGTCTTGAATCAAGTCAGGC+AGG 0.533537 1_3:+8630434 Msa0101970:CDS
CGACGTGGAAACAGCAATCA+GGG 0.533602 1_3:+8630283 Msa0101970:CDS
ATTATCAGCAAAACAAGCAA+TGG 0.533785 1_3:+8634172 Msa0101970:CDS
GCAATCAGCTTTGTGCCTGA+AGG 0.534105 1_3:+8628914 Msa0101970:CDS
GGTCCTTGTTGGGCTTTCGA+GGG 0.535468 1_3:+8629660 Msa0101970:CDS
AAAAGTTCCGAAAAGGAAAA+GGG 0.535509 1_3:+8630848 Msa0101970:CDS
TTGATGAGCGAGCCATTCCT+GGG 0.536043 1_3:-8634414 None:intergenic
GCATTTCCAGATCTGAGATC+CGG 0.538282 1_3:-8634202 None:intergenic
CAAGGATTCACCTGCTCAGG+TGG 0.538482 1_3:+8630673 Msa0101970:CDS
ATAGCTATTGGCTTAGACAA+TGG 0.538631 1_3:+8629228 Msa0101970:CDS
CATTAGGCTTTGCACAGACG+AGG 0.539579 1_3:+8630523 Msa0101970:CDS
AGTACATCCGCCCAAAGAGA+TGG 0.540263 1_3:-8631124 None:intergenic
AGGAAAAGGGCCGTCTTGAA+AGG 0.540276 1_3:+8630861 Msa0101970:CDS
CTGAGAAAATCAACAGGAGA+TGG 0.541673 1_3:-8630590 None:intergenic
TCAATCACTTCAGTTGTTTG+CGG 0.543295 1_3:+8629374 Msa0101970:CDS
AGTGTCATTACCATTGCCTC+AGG 0.543487 1_3:-8629026 None:intergenic
ACGGCGAGTCCTGATTGTGT+TGG 0.543998 1_3:+8628975 Msa0101970:CDS
TTTCCTCAATCACTGGACTT+GGG 0.544351 1_3:+8629337 Msa0101970:CDS
CAACGTACATTGCATGCTCA+TGG 0.545405 1_3:-8630325 None:intergenic
CGTCTTGAAAGGCGTGAAAA+GGG 0.546551 1_3:+8630872 Msa0101970:CDS
AAGTTAAGAACTCCAAAGAT+GGG 0.547474 1_3:+8634116 Msa0101970:CDS
GCGGAAGTTCGAATTCTTCG+AGG 0.550459 1_3:+8627971 Msa0101970:CDS
GCAGGAATCAAAGGTGATTG+AGG 0.554065 1_3:+8631315 Msa0101970:CDS
AAAATAAGTGCCCAAACCAA+TGG 0.557751 1_3:+8630809 Msa0101970:CDS
GTGCACAGCAGGCAGGTCTA+GGG 0.558000 1_3:-8633948 None:intergenic
TAATCAGTTTCCTGAGGCAA+TGG 0.558713 1_3:+8629016 Msa0101970:CDS
GAGTGTTGTTCGAGTGGAAG+GGG 0.560346 1_3:+8628080 Msa0101970:CDS
AAAACAAGCTCACAGAACTC+GGG 0.563705 1_3:-8629401 None:intergenic
GAAAATCCATAAGGGAATGA+GGG 0.566341 1_3:-8630628 None:intergenic
TACACATGCTTAAGAGTGCA+TGG 0.567883 1_3:+8630897 Msa0101970:CDS
CAACGTGAAAGAGAAAGAGA+AGG 0.569287 1_3:+8628046 Msa0101970:CDS
AGAAGGCTGGGAGACATGAA+TGG 0.570653 1_3:+8630351 Msa0101970:CDS
ATTAAAAGTGAAGACAGCAT+CGG 0.571136 1_3:+8630248 Msa0101970:CDS
AAAATTCTAAGAGTCAGGAC+AGG 0.572111 1_3:+8634083 Msa0101970:CDS
GAAGCTTGAGCAGGAATCAA+AGG 0.573976 1_3:+8631306 Msa0101970:CDS
GGACTTGGGTTTAGGGTGGA+CGG 0.574855 1_3:+8629351 Msa0101970:CDS
TGATCAAGGATTACATTGCT+CGG 0.575906 1_3:+8631284 Msa0101970:CDS
AAGACTAGAAATATATTCCA+AGG 0.575970 1_3:-8630417 None:intergenic
TGTACGTTGCAAAGAAGGCT+GGG 0.580641 1_3:+8630339 Msa0101970:CDS
ATCACTGAAAGTGTGAGGCA+AGG 0.582038 1_3:-8631265 None:intergenic
GGATTTAAATCATGCAGATG+AGG 0.582596 1_3:+8634664 Msa0101970:three_prime_UTR
GGAGCGAAAAGCTGAAAGGA+AGG 0.586980 1_3:-8634263 None:intergenic
CACCCGTTTCAAGCTTCAGG+TGG 0.587503 1_3:+8629293 Msa0101970:CDS
GTCTTGAATCAAGTCAGGCA+GGG 0.589046 1_3:+8630435 Msa0101970:CDS
CACTGGACTTGGGTTTAGGG+TGG 0.589156 1_3:+8629347 Msa0101970:CDS
ACATGAAGTGCACAGCAGGC+AGG 0.590221 1_3:-8633955 None:intergenic
AAAATATACCAATAAGGTCA+AGG 0.592033 1_3:+8630655 Msa0101970:CDS
TCCTCGATCGAAGAAGCAAA+CGG 0.594689 1_3:-8628132 None:intergenic
AGAATCTGAATCGTCTCCGA+TGG 0.595348 1_3:-8630500 None:intergenic
ATAGCTATGAGTAGTATTGG+AGG 0.595921 1_3:-8629213 None:intergenic
CACACAGGCAATGAGGAAAG+AGG 0.596991 1_3:+8633862 Msa0101970:CDS
CAACTTCCTGGTAACGATTG+GGG 0.597577 1_3:+8628869 Msa0101970:CDS
AAATTGGTAGGATGGTTTCG+TGG 0.597747 1_3:+8629690 Msa0101970:CDS
TATGCAGGCGCATGATCACA+AGG 0.597985 1_3:+8631051 Msa0101970:CDS
AGATCTTGGTAGTTATGAAG+AGG 0.598131 1_3:+8630394 Msa0101970:CDS
TTGGAAAAGCTACATGAGAA+GGG 0.599303 1_3:+8630146 Msa0101970:CDS
GCAAGACTATGATGAGGCAA+TGG 0.600642 1_3:+8630031 Msa0101970:CDS
GAGTTTGAAGGACAATTATG+GGG 0.601929 1_3:-8631231 None:intergenic
TTATATATATCACCCAGGAA+TGG 0.603664 1_3:+8634402 Msa0101970:three_prime_UTR
CGAGTGTTGTTCGAGTGGAA+GGG 0.604908 1_3:+8628079 Msa0101970:CDS
TGGGTGATTCAGTTAAAGGA+GGG 0.607280 1_3:+8631098 Msa0101970:CDS
TATATTCTGGGGCACACTCG+GGG 0.610780 1_3:-8634027 None:intergenic
GCATCAAAGGAGATATTGCA+CGG 0.611133 1_3:+8629262 Msa0101970:CDS
AACAAGCAATGGATCCACTC+CGG 0.612235 1_3:+8634183 Msa0101970:CDS
TCTAATAGAGCACAAGCCAT+CGG 0.612609 1_3:+8630484 Msa0101970:CDS
CTGGGTGATTCAGTTAAAGG+AGG 0.613053 1_3:+8631097 Msa0101970:CDS
ATTTGAAGGTACTGGTTGTG+TGG 0.613346 1_3:+8634506 Msa0101970:three_prime_UTR
AAAATCGAGTGTTGTTCGAG+TGG 0.614642 1_3:+8628074 Msa0101970:CDS
ACAGACGAGGGTGACAAAAG+AGG 0.616703 1_3:+8630536 Msa0101970:CDS
ACCAGATCCAATCTGATCAA+GGG 0.620565 1_3:-8629454 None:intergenic
GCTCATGGTAATTGGCAGAA+CGG 0.620726 1_3:-8630310 None:intergenic
TAATGGAGAAGTTGAAAACC+CGG 0.622700 1_3:-8634337 None:intergenic
CTCTGTGCAGGAAGACACAC+AGG 0.626890 1_3:+8633847 Msa0101970:intron
TCATTAGACTGTGATACTGA+AGG 0.629024 1_3:-8630746 None:intergenic
GTTAATAATTGGTCGACCAG+AGG 0.633039 1_3:+8629608 Msa0101970:CDS
TCAGTATCACAGTCTAATGA+GGG 0.633103 1_3:+8630749 Msa0101970:CDS
TGCAAAATGCACAATTCCAG+AGG 0.634341 1_3:+8628004 Msa0101970:CDS
TAAGACAGACCTATATTCTG+GGG 0.635945 1_3:-8634038 None:intergenic
TCTCCCTCGAAAGCCCAACA+AGG 0.638329 1_3:-8629663 None:intergenic
AACATGTAAACTCAAGAACA+TGG 0.638417 1_3:-8634381 None:intergenic
AGTTTGAAGGACAATTATGG+GGG 0.640269 1_3:-8631230 None:intergenic
CCTTGATCACTGAAAGTGTG+AGG 0.642300 1_3:-8631270 None:intergenic
AGGCACAAAGCTGATTGCTG+GGG 0.643663 1_3:-8628909 None:intergenic
AGATGCTGCAGCTACTTCTG+AGG 0.644849 1_3:+8629974 Msa0101970:CDS
GGATGGAGCGAAAAGCTGAA+AGG 0.645330 1_3:-8634267 None:intergenic
TGAGGTTCTGAGAAAATATG+GGG 0.647630 1_3:+8629992 Msa0101970:CDS
GGATATATACAACTCTAAGA+GGG 0.651731 1_3:-8630708 None:intergenic
TCTCATATGCTCTATGAATG+GGG 0.652495 1_3:+8629819 Msa0101970:CDS
TCCAGATCTGAGATCCGGAG+TGG 0.655088 1_3:-8634197 None:intergenic
GGAAATGCATCATCTAGCAG+TGG 0.655340 1_3:+8634217 Msa0101970:CDS
GCAATCTGAAAGTACGAGCA+CGG 0.655504 1_3:+8628956 Msa0101970:CDS
CATTGCATGATCAACCACCA+AGG 0.657468 1_3:+8629424 Msa0101970:CDS
GAGCGAAAAGCTGAAAGGAA+GGG 0.657629 1_3:-8634262 None:intergenic
AGGAAGACACACAGGCAATG+AGG 0.657761 1_3:+8633855 Msa0101970:intron
CATCAAAGGAGATATTGCAC+GGG 0.659347 1_3:+8629263 Msa0101970:CDS
GGAATCAAAGGTGATTGAGG+AGG 0.659787 1_3:+8631318 Msa0101970:CDS
ACATGTTATATATATCACCC+AGG 0.660615 1_3:+8634397 Msa0101970:three_prime_UTR
AGTGGATGTTCTGTCTCTGG+AGG 0.660662 1_3:-8630920 None:intergenic
ATTAGGCTTTGCACAGACGA+GGG 0.662527 1_3:+8630524 Msa0101970:CDS
ATTCACTAATCAGTTTCCTG+AGG 0.669474 1_3:+8629010 Msa0101970:CDS
ATTGCATGCTGCAAAAGACT+GGG 0.673354 1_3:+8631079 Msa0101970:CDS
CGGCGGCCATGTATCAATGG+CGG 0.677407 1_3:+8627952 Msa0101970:exon
CGGGGAACTTAAGTTCGACG+TGG 0.678311 1_3:+8630268 Msa0101970:CDS
AGGGGATCCATCTCTTTGGG+CGG 0.679575 1_3:+8631117 Msa0101970:CDS
CAGCAAGCAAGACTATGATG+AGG 0.681320 1_3:+8630025 Msa0101970:CDS
ATGCAGGCGCATGATCACAA+GGG 0.688495 1_3:+8631052 Msa0101970:CDS
GGGTGATTCAGTTAAAGGAG+GGG 0.693595 1_3:+8631099 Msa0101970:CDS
CATCTTTAACCAGAGCACTG+TGG 0.696661 1_3:-8629794 None:intergenic
GTGATGAGTGAAGATACCAT+TGG 0.698003 1_3:-8627822 None:intergenic
GTTTGAAGGACAATTATGGG+GGG 0.705881 1_3:-8631229 None:intergenic
AAGATCTTAGGACAAATGCG+AGG 0.706313 1_3:+8633888 Msa0101970:CDS
GTAACAGTTCAATAGAAGTG+TGG 0.715654 1_3:-8630189 None:intergenic
TGCATGATCAACCACCAAGG+AGG 0.719899 1_3:+8629427 Msa0101970:CDS
AAACAAGCTCACAGAACTCG+GGG 0.724973 1_3:-8629400 None:intergenic
TAAAAGTGAAGACAGCATCG+GGG 0.751960 1_3:+8630250 Msa0101970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTCAATTATGTATTT+TGG + chr1_3:8628239-8628258 Msa0101970:intron 10.0%
!!! TTTATTCAATTATGTATTTT+GGG + chr1_3:8628240-8628259 Msa0101970:intron 10.0%
!!! TTTATTATTTTATAAAACTC+TGG - chr1_3:8632710-8632729 None:intergenic 10.0%
!! AATATTTCTTAATATCATTA+TGG + chr1_3:8633106-8633125 Msa0101970:intron 10.0%
!! AGTTATAAGATAAATATTTA+AGG + chr1_3:8634576-8634595 Msa0101970:three_prime_UTR 10.0%
!! TACATAATTGAATAAATTGA+AGG - chr1_3:8628236-8628255 None:intergenic 15.0%
!! TTAGATAAATTATATCTGTA+TGG + chr1_3:8629079-8629098 Msa0101970:intron 15.0%
!!! TTTTATCTTTCAGATATAAA+GGG - chr1_3:8632358-8632377 None:intergenic 15.0%
!!! TTAAAAGTGTAATATTATGA+CGG + chr1_3:8634643-8634662 Msa0101970:three_prime_UTR 15.0%
!!! TTGTAAAGTTTGTTCTTTTT+TGG + chr1_3:8628265-8628284 Msa0101970:intron 20.0%
!!! TTTCTTTTTAACCAACATAT+AGG - chr1_3:8628754-8628773 None:intergenic 20.0%
!! AAATTATATCTGTATGGTAA+TGG + chr1_3:8629085-8629104 Msa0101970:intron 20.0%
!!! ATGCTTCTTTTTAATGATTT+TGG + chr1_3:8629142-8629161 Msa0101970:intron 20.0%
!!! TTTTAATGATTTTGGAATTG+TGG + chr1_3:8629150-8629169 Msa0101970:intron 20.0%
!! ATAAAAATATATTGAGAGCA+AGG - chr1_3:8629526-8629545 None:intergenic 20.0%
!!! GTATATTTTTATGAAGTTGA+TGG + chr1_3:8629633-8629652 Msa0101970:CDS 20.0%
!! ACAAATCAACTTTATCTATT+GGG + chr1_3:8629865-8629884 Msa0101970:CDS 20.0%
!!! TTATGTGATACAAAAGTTTT+TGG + chr1_3:8630091-8630110 Msa0101970:CDS 20.0%
!!! TTTTTCAACATCTTTCAATT+TGG - chr1_3:8630216-8630235 None:intergenic 20.0%
!!! TTTTTCAAGAAAATCCATAA+GGG - chr1_3:8630639-8630658 None:intergenic 20.0%
!!! ATTTTTCAAGAAAATCCATA+AGG - chr1_3:8630640-8630659 None:intergenic 20.0%
!! TCTTGAAAAATATACCAATA+AGG + chr1_3:8630649-8630668 Msa0101970:CDS 20.0%
!! AAATGAATTCATTCAAAGAT+GGG + chr1_3:8630975-8630994 Msa0101970:CDS 20.0%
!!! AAGTTTTGAATTACATTGAA+AGG + chr1_3:8631194-8631213 Msa0101970:CDS 20.0%
!!! AGTTTTGAATTACATTGAAA+GGG + chr1_3:8631195-8631214 Msa0101970:CDS 20.0%
!! AATATTAGGAAATGAGAAAA+TGG - chr1_3:8631466-8631485 None:intergenic 20.0%
!!! TTTTAGGAATTTACAAACAA+TGG + chr1_3:8631660-8631679 Msa0101970:intron 20.0%
!!! GTTTTATCTTTCAGATATAA+AGG - chr1_3:8632359-8632378 None:intergenic 20.0%
!! GATACAATGTTAAAAATGTA+TGG - chr1_3:8632381-8632400 None:intergenic 20.0%
!! ACAATACATACAAGTAAAAA+TGG - chr1_3:8632875-8632894 None:intergenic 20.0%
!! AGTCATTTATGTACTAAAAA+AGG - chr1_3:8632899-8632918 None:intergenic 20.0%
!!! ATATTAGTTTACAGTATCAT+AGG + chr1_3:8633135-8633154 Msa0101970:intron 20.0%
!! AAATAAGGAGGAAAAAAAAA+TGG - chr1_3:8633181-8633200 None:intergenic 20.0%
!!! TTTTTCCTCCTTATTTAATT+AGG + chr1_3:8633185-8633204 Msa0101970:intron 20.0%
!! TAAATCCTAATTAAATAAGG+AGG - chr1_3:8633193-8633212 None:intergenic 20.0%
!! CTCTAAATCCTAATTAAATA+AGG - chr1_3:8633196-8633215 None:intergenic 20.0%
!!! TTCTAAAAAATTTGATACTC+CGG - chr1_3:8634484-8634503 None:intergenic 20.0%
!!! AATTTTTTAGAAGGATTTGA+AGG + chr1_3:8634492-8634511 Msa0101970:three_prime_UTR 20.0%
!!! TAAATATTTAAGGCAATGTT+AGG + chr1_3:8634586-8634605 Msa0101970:three_prime_UTR 20.0%
!! TTGCTTGATGAATAGATTTT+TGG + chr1_3:8628295-8628314 Msa0101970:intron 25.0%
!! TGCTTGATGAATAGATTTTT+GGG + chr1_3:8628296-8628315 Msa0101970:intron 25.0%
!!! AACATTGATTTGAGAGAATT+GGG + chr1_3:8628322-8628341 Msa0101970:intron 25.0%
! AGTAAACAACATATGAACAA+TGG - chr1_3:8628528-8628547 None:intergenic 25.0%
! TTGGATTAACAACTTATTTG+CGG - chr1_3:8628687-8628706 None:intergenic 25.0%
! AATAAGTTGTTAATCCAAAC+AGG + chr1_3:8628689-8628708 Msa0101970:intron 25.0%
! ATAAGTTGTTAATCCAAACA+GGG + chr1_3:8628690-8628709 Msa0101970:intron 25.0%
! GTTGGTTAAAAAGAAAAGAT+TGG + chr1_3:8628758-8628777 Msa0101970:intron 25.0%
! TAAAAAGAAAAGATTGGTGA+AGG + chr1_3:8628764-8628783 Msa0101970:intron 25.0%
!! TTGTAGTTTAAATGTTTTCC+AGG + chr1_3:8628791-8628810 Msa0101970:intron 25.0%
!! TGTAGTTTAAATGTTTTCCA+GGG + chr1_3:8628792-8628811 Msa0101970:intron 25.0%
!! TACATCTTTTATTGTCTTAG+AGG + chr1_3:8629185-8629204 Msa0101970:CDS 25.0%
! GACAAATCAACTTTATCTAT+TGG + chr1_3:8629864-8629883 Msa0101970:CDS 25.0%
! CAAATCAACTTTATCTATTG+GGG + chr1_3:8629866-8629885 Msa0101970:CDS 25.0%
!! AACTTTTGTATCACATAAGA+AGG - chr1_3:8630089-8630108 None:intergenic 25.0%
! AAGACTAGAAATATATTCCA+AGG - chr1_3:8630420-8630439 None:intergenic 25.0%
! AAAATATACCAATAAGGTCA+AGG + chr1_3:8630655-8630674 Msa0101970:CDS 25.0%
! GAAATGAATTCATTCAAAGA+TGG + chr1_3:8630974-8630993 Msa0101970:CDS 25.0%
! TGAAAAGATGAAACTCTATA+AGG + chr1_3:8631012-8631031 Msa0101970:CDS 25.0%
!! CAAAACTTCTTTTACTTCTT+TGG - chr1_3:8631182-8631201 None:intergenic 25.0%
!!! GATATTTTTCAATAGCTTGT+CGG - chr1_3:8631345-8631364 None:intergenic 25.0%
! ACAAGCTATTGAAAAATATC+AGG + chr1_3:8631345-8631364 Msa0101970:CDS 25.0%
! ATGGCTATTTGTATATGTAA+TGG - chr1_3:8631447-8631466 None:intergenic 25.0%
! CATAATGTGACAACAATATT+AGG - chr1_3:8631480-8631499 None:intergenic 25.0%
!!! CTTCTAATGGATTTTTTTGT+AGG - chr1_3:8631737-8631756 None:intergenic 25.0%
! ATCAATACTAGTGCAATTAA+TGG - chr1_3:8631842-8631861 None:intergenic 25.0%
!!! AAGTTTGTTTTCTGTTAGTT+AGG + chr1_3:8632029-8632048 Msa0101970:intron 25.0%
!! CAAATATGAGAAAATGGTTT+TGG - chr1_3:8632142-8632161 None:intergenic 25.0%
! TGAACACAAATATGAGAAAA+TGG - chr1_3:8632148-8632167 None:intergenic 25.0%
! ATGAATGATCCAAAAACATA+TGG + chr1_3:8632279-8632298 Msa0101970:intron 25.0%
! TCTTCAACATTTATCAATGT+TGG + chr1_3:8632308-8632327 Msa0101970:intron 25.0%
! CTTCAACATTTATCAATGTT+GGG + chr1_3:8632309-8632328 Msa0101970:intron 25.0%
!! GTATTTTCTATTTCACATAG+TGG + chr1_3:8632969-8632988 Msa0101970:intron 25.0%
!!! TATTTCACATAGTGGATTTT+TGG + chr1_3:8632977-8632996 Msa0101970:intron 25.0%
! GAAAAATGTACTATATGTGA+TGG - chr1_3:8633272-8633291 None:intergenic 25.0%
! ATTAAATATGAGCAGGAATT+TGG + chr1_3:8633336-8633355 Msa0101970:intron 25.0%
! TTGTGCTATAATATCTGTTA+CGG + chr1_3:8633496-8633515 Msa0101970:intron 25.0%
! TGCTTTATAACATATTGTGA+TGG - chr1_3:8633525-8633544 None:intergenic 25.0%
! CCATACAAATTATAAACATG+CGG - chr1_3:8633550-8633569 None:intergenic 25.0%
!!! TATTTTTTCTGTAAACAGCA+CGG + chr1_3:8633800-8633819 Msa0101970:intron 25.0%
!!! ATTGCTGAATATTTTGGAAA+AGG + chr1_3:8634148-8634167 Msa0101970:CDS 25.0%
!!! TTGCTGAATATTTTGGAAAA+GGG + chr1_3:8634149-8634168 Msa0101970:CDS 25.0%
!!! AGAAACCAACTTTTTAGTAT+TGG - chr1_3:8634291-8634310 None:intergenic 25.0%
!! AAAAGTTGGTTTCTAAATGT+TGG + chr1_3:8634297-8634316 Msa0101970:three_prime_UTR 25.0%
!!! GGAGTATCAAATTTTTTAGA+AGG + chr1_3:8634483-8634502 Msa0101970:three_prime_UTR 25.0%
! TTTATCTTATAACTCCTTCA+AGG - chr1_3:8634570-8634589 None:intergenic 25.0%
!!! AGAAAAGTATCACTTCAATT+TGG - chr1_3:8634613-8634632 None:intergenic 25.0%
!!! CTCAAATTGTTATTTGTCAT+GGG - chr1_3:8634713-8634732 None:intergenic 25.0%
TCTCTTTATTCAACAACTCA+AGG + chr1_3:8628196-8628215 Msa0101970:CDS 30.0%
!! GAACATTGATTTGAGAGAAT+TGG + chr1_3:8628321-8628340 Msa0101970:intron 30.0%
TAAGTTGTTAATCCAAACAG+GGG + chr1_3:8628691-8628710 Msa0101970:intron 30.0%
! GTAGTTTAAATGTTTTCCAG+GGG + chr1_3:8628793-8628812 Msa0101970:intron 30.0%
TATCTAAGTCAAAAACCTTC+AGG - chr1_3:8628932-8628951 None:intergenic 30.0%
TTCTGTATGTTAACATGAAC+AGG + chr1_3:8629584-8629603 Msa0101970:intron 30.0%
CATGAACAGGAGTTAATAAT+TGG + chr1_3:8629597-8629616 Msa0101970:intron 30.0%
TCATAAAAATATACTGCCTC+TGG - chr1_3:8629627-8629646 None:intergenic 30.0%
TTTCGAGGGAGAAAAAAAAT+TGG + chr1_3:8629674-8629693 Msa0101970:CDS 30.0%
GAGAAAAAAAATTGGTAGGA+TGG + chr1_3:8629682-8629701 Msa0101970:CDS 30.0%
TTTCTCATATGCTCTATGAA+TGG + chr1_3:8629817-8629836 Msa0101970:CDS 30.0%
TTCTCATATGCTCTATGAAT+GGG + chr1_3:8629818-8629837 Msa0101970:CDS 30.0%
AACTTTATCTATTGGGGAAA+AGG + chr1_3:8629872-8629891 Msa0101970:CDS 30.0%
CAAGAAAAACCTATATACTG+TGG + chr1_3:8629923-8629942 Msa0101970:CDS 30.0%
GATTAATTGCCACAGTATAT+AGG - chr1_3:8629935-8629954 None:intergenic 30.0%
GCTCAGTACATAAATACTAT+TGG + chr1_3:8630053-8630072 Msa0101970:CDS 30.0%
ATTAAAAGTGAAGACAGCAT+CGG + chr1_3:8630248-8630267 Msa0101970:CDS 30.0%
AAAATGCTGAGAAAATCAAC+AGG - chr1_3:8630599-8630618 None:intergenic 30.0%
! GGATATATACAACTCTAAGA+GGG - chr1_3:8630711-8630730 None:intergenic 30.0%
TGGATATATACAACTCTAAG+AGG - chr1_3:8630712-8630731 None:intergenic 30.0%
!!! TTTTTTCTGATGCTACGTTA+AGG - chr1_3:8630784-8630803 None:intergenic 30.0%
AAAAGTTCCGAAAAGGAAAA+GGG + chr1_3:8630848-8630867 Msa0101970:CDS 30.0%
GCTAAATCAACATCATAAAG+TGG - chr1_3:8630941-8630960 None:intergenic 30.0%
AGAGTTTGAAGGACAATTAT+GGG - chr1_3:8631235-8631254 None:intergenic 30.0%
GCTATTGAAAAATATCAGGT+TGG + chr1_3:8631349-8631368 Msa0101970:intron 30.0%
! GCTGAAGTTCTTTACATTTT+AGG + chr1_3:8631644-8631663 Msa0101970:intron 30.0%
ATTTACAAACAATGGACCTA+TGG + chr1_3:8631668-8631687 Msa0101970:intron 30.0%
CAAAAAAATCCATTAGAAGC+AGG + chr1_3:8631738-8631757 Msa0101970:intron 30.0%
!! CTAGTATTGATAGTAACACA+AGG + chr1_3:8631851-8631870 Msa0101970:intron 30.0%
TGATAGTAACACAAGGATAT+TGG + chr1_3:8631858-8631877 Msa0101970:intron 30.0%
GATAGTAACACAAGGATATT+GGG + chr1_3:8631859-8631878 Msa0101970:intron 30.0%
TAAAAATTGCAGATGCAGAT+GGG - chr1_3:8632108-8632127 None:intergenic 30.0%
TTAAAAATTGCAGATGCAGA+TGG - chr1_3:8632109-8632128 None:intergenic 30.0%
! TTTACTATTTCTCTGTCTTG+AGG + chr1_3:8632176-8632195 Msa0101970:intron 30.0%
GAAAACAGTTATAGCCTAAA+AGG + chr1_3:8632220-8632239 Msa0101970:intron 30.0%
! GTTTCTGCTAGTTGATATAA+CGG + chr1_3:8632662-8632681 Msa0101970:intron 30.0%
! TAGTTGATATAACGGCAATA+GGG + chr1_3:8632670-8632689 Msa0101970:intron 30.0%
GTTGAAAGATTTACGTGTTA+AGG - chr1_3:8632819-8632838 None:intergenic 30.0%
ACATACAAGTAAAAATGGAG+TGG - chr1_3:8632870-8632889 None:intergenic 30.0%
GACTTATTTCAATCACTATG+CGG + chr1_3:8632915-8632934 Msa0101970:intron 30.0%
TGAAATAGAAAATACCGTCA+CGG - chr1_3:8632964-8632983 None:intergenic 30.0%
!!! ATGCTATTTTCTGTAATCTG+CGG + chr1_3:8633004-8633023 Msa0101970:intron 30.0%
!! AATCTAGTTCTTAGAAACTG+TGG - chr1_3:8633078-8633097 None:intergenic 30.0%
! ACATTTTTCTCTTCCCTAAA+CGG + chr1_3:8633283-8633302 Msa0101970:intron 30.0%
! CCGCATGTTTATAATTTGTA+TGG + chr1_3:8633547-8633566 Msa0101970:intron 30.0%
!! ATTCTTTTTCATTATCGCCA+AGG - chr1_3:8634006-8634025 None:intergenic 30.0%
AAGTTAAGAACTCCAAAGAT+GGG + chr1_3:8634116-8634135 Msa0101970:CDS 30.0%
! TCTGTCATTGCTGAATATTT+TGG + chr1_3:8634142-8634161 Msa0101970:CDS 30.0%
ATTATCAGCAAAACAAGCAA+TGG + chr1_3:8634172-8634191 Msa0101970:CDS 30.0%
TCCATCCAATACTAAAAAGT+TGG + chr1_3:8634283-8634302 Msa0101970:three_prime_UTR 30.0%
!! ACCAACTTTTTAGTATTGGA+TGG - chr1_3:8634287-8634306 None:intergenic 30.0%
GGATGAATCTGATTAATTTC+CGG + chr1_3:8634318-8634337 Msa0101970:three_prime_UTR 30.0%
GATGAATCTGATTAATTTCC+GGG + chr1_3:8634319-8634338 Msa0101970:three_prime_UTR 30.0%
TTTCAACTTCTCCATTAGTA+CGG + chr1_3:8634343-8634362 Msa0101970:three_prime_UTR 30.0%
AACATGTAAACTCAAGAACA+TGG - chr1_3:8634384-8634403 None:intergenic 30.0%
ACATGTTATATATATCACCC+AGG + chr1_3:8634397-8634416 Msa0101970:three_prime_UTR 30.0%
TTATATATATCACCCAGGAA+TGG + chr1_3:8634402-8634421 Msa0101970:three_prime_UTR 30.0%
ACTACAACAAAAAGACCATT+CGG - chr1_3:8634455-8634474 None:intergenic 30.0%
!! TTTTTGTTGTAGTGTTATGC+CGG + chr1_3:8634462-8634481 Msa0101970:three_prime_UTR 30.0%
CTGCAACTAAACGACAATTT+AGG - chr1_3:8627792-8627811 None:intergenic 35.0%
! CTAAATTGTCGTTTAGTTGC+AGG + chr1_3:8627790-8627809 Msa0101970:five_prime_UTR 35.0%
ATTTACAACGTGATCGATTG+AGG - chr1_3:8627849-8627868 None:intergenic 35.0%
! TGAAGAAACCTTCGCATTTT+TGG + chr1_3:8627887-8627906 Msa0101970:five_prime_UTR 35.0%
AATTCGAACCAAAAATGCGA+AGG - chr1_3:8627898-8627917 None:intergenic 35.0%
!!! GATCCATTTTTTGTGAATCG+CGG + chr1_3:8627932-8627951 Msa0101970:five_prime_UTR 35.0%
!!! GTTGTAACTGGTTTTGATGA+TGG + chr1_3:8628107-8628126 Msa0101970:CDS 35.0%
AATTGGGTAGTTGTAGATAG+TGG + chr1_3:8628338-8628357 Msa0101970:intron 35.0%
TGACATCATGAAGAATGTCA+TGG + chr1_3:8628404-8628423 Msa0101970:intron 35.0%
ATTCACTAATCAGTTTCCTG+AGG + chr1_3:8629010-8629029 Msa0101970:CDS 35.0%
! ATAGCTATGAGTAGTATTGG+AGG - chr1_3:8629216-8629235 None:intergenic 35.0%
CCAATAGCTATGAGTAGTAT+TGG - chr1_3:8629219-8629238 None:intergenic 35.0%
CCAATACTACTCATAGCTAT+TGG + chr1_3:8629216-8629235 Msa0101970:CDS 35.0%
!! ATAGCTATTGGCTTAGACAA+TGG + chr1_3:8629228-8629247 Msa0101970:CDS 35.0%
GGTTCAATTTACTGCATCAA+AGG + chr1_3:8629249-8629268 Msa0101970:CDS 35.0%
!!! AGGAAAGTGTTTTGTCTGAA+TGG - chr1_3:8629323-8629342 None:intergenic 35.0%
AAAACACTTTCCTCAATCAC+TGG + chr1_3:8629330-8629349 Msa0101970:CDS 35.0%
TCAATCACTTCAGTTGTTTG+CGG + chr1_3:8629374-8629393 Msa0101970:CDS 35.0%
AACAAAGGTTGCATACAGAA+CGG - chr1_3:8629503-8629522 None:intergenic 35.0%
ATATTGAGAGCAAGGAACAA+AGG - chr1_3:8629518-8629537 None:intergenic 35.0%
GAAACATTTAGCATTCAGCA+AGG - chr1_3:8629567-8629586 None:intergenic 35.0%
!!! TTTTATGAAGTTGATGGACG+TGG + chr1_3:8629639-8629658 Msa0101970:CDS 35.0%
GAGGGAGAAAAAAAATTGGT+AGG + chr1_3:8629678-8629697 Msa0101970:CDS 35.0%
GATCTGCAATAACACACAAA+AGG - chr1_3:8629719-8629738 None:intergenic 35.0%
GTTATTGCAGATCAAAGAAC+AGG + chr1_3:8629726-8629745 Msa0101970:CDS 35.0%
TCTCATATGCTCTATGAATG+GGG + chr1_3:8629819-8629838 Msa0101970:CDS 35.0%
ATCTATTGGGGAAAAGGATA+TGG + chr1_3:8629878-8629897 Msa0101970:CDS 35.0%
!! TCTGAGGTTCTGAGAAAATA+TGG + chr1_3:8629990-8630009 Msa0101970:CDS 35.0%
!! CTGAGGTTCTGAGAAAATAT+GGG + chr1_3:8629991-8630010 Msa0101970:CDS 35.0%
!! TGAGGTTCTGAGAAAATATG+GGG + chr1_3:8629992-8630011 Msa0101970:CDS 35.0%
CTACAACCTCACAAATTACT+TGG + chr1_3:8630127-8630146 Msa0101970:CDS 35.0%
!! GCTTTTCCAAGTAATTTGTG+AGG - chr1_3:8630136-8630155 None:intergenic 35.0%
TTGGAAAAGCTACATGAGAA+GGG + chr1_3:8630146-8630165 Msa0101970:CDS 35.0%
GTAACAGTTCAATAGAAGTG+TGG - chr1_3:8630192-8630211 None:intergenic 35.0%
TTAAAAGTGAAGACAGCATC+GGG + chr1_3:8630249-8630268 Msa0101970:CDS 35.0%
AAGATCTTGCTTGAAGATCT+TGG + chr1_3:8630380-8630399 Msa0101970:CDS 35.0%
! AGATCTTGGTAGTTATGAAG+AGG + chr1_3:8630394-8630413 Msa0101970:CDS 35.0%
!! TTCTAGTCTTGAATCAAGTC+AGG + chr1_3:8630430-8630449 Msa0101970:CDS 35.0%
AGACGATTCAGATTCTCATT+AGG + chr1_3:8630507-8630526 Msa0101970:CDS 35.0%
GAAAATCCATAAGGGAATGA+GGG - chr1_3:8630631-8630650 None:intergenic 35.0%
AGAAAATCCATAAGGGAATG+AGG - chr1_3:8630632-8630651 None:intergenic 35.0%
TGAAGGAAAGTTCAATTCGT+TGG - chr1_3:8630732-8630751 None:intergenic 35.0%
TCATTAGACTGTGATACTGA+AGG - chr1_3:8630749-8630768 None:intergenic 35.0%
TTCAGTATCACAGTCTAATG+AGG + chr1_3:8630748-8630767 Msa0101970:CDS 35.0%
TCAGTATCACAGTCTAATGA+GGG + chr1_3:8630749-8630768 Msa0101970:CDS 35.0%
AAAATAAGTGCCCAAACCAA+TGG + chr1_3:8630809-8630828 Msa0101970:CDS 35.0%
!! AGCAATAGTTCCATTGGTTT+GGG - chr1_3:8630822-8630841 None:intergenic 35.0%
TGATCAGAAAAGTTCCGAAA+AGG + chr1_3:8630841-8630860 Msa0101970:CDS 35.0%
GAAAAGTTCCGAAAAGGAAA+AGG + chr1_3:8630847-8630866 Msa0101970:CDS 35.0%
GCGGATGTACTCAAATATTT+CGG + chr1_3:8631136-8631155 Msa0101970:CDS 35.0%
AGTTTGAAGGACAATTATGG+GGG - chr1_3:8631233-8631252 None:intergenic 35.0%
GAGTTTGAAGGACAATTATG+GGG - chr1_3:8631234-8631253 None:intergenic 35.0%
CAGAGTTTGAAGGACAATTA+TGG - chr1_3:8631236-8631255 None:intergenic 35.0%
!!! GGTTTTTTGACAGAGTTTGA+AGG - chr1_3:8631246-8631265 None:intergenic 35.0%
TGATCAAGGATTACATTGCT+CGG + chr1_3:8631284-8631303 Msa0101970:CDS 35.0%
TGCTATCAGTGTCTATTATG+TGG - chr1_3:8631603-8631622 None:intergenic 35.0%
!! ACGATTTGTTATAAGCAGTG+AGG + chr1_3:8631983-8632002 Msa0101970:intron 35.0%
TTATAGCCTAAAAGGACTAG+AGG + chr1_3:8632228-8632247 Msa0101970:intron 35.0%
! AATATGCCTCTAGTCCTTTT+AGG - chr1_3:8632237-8632256 None:intergenic 35.0%
! AGACACTAGCCATATGTTTT+TGG - chr1_3:8632291-8632310 None:intergenic 35.0%
! TTACATGTGGACTAAAAGCA+AGG - chr1_3:8632433-8632452 None:intergenic 35.0%
GAACAAGACTAGATTACATG+TGG - chr1_3:8632446-8632465 None:intergenic 35.0%
!! TCCTTTTAGTAAGCTTTAGC+TGG + chr1_3:8632495-8632514 Msa0101970:intron 35.0%
TCCAGCTAAAGCTTACTAAA+AGG - chr1_3:8632499-8632518 None:intergenic 35.0%
! CTAGTTGATATAACGGCAAT+AGG + chr1_3:8632669-8632688 Msa0101970:intron 35.0%
TTACGTGTTAAGGTGCATAT+AGG - chr1_3:8632809-8632828 None:intergenic 35.0%
GAAATAGAAAATACCGTCAC+GGG - chr1_3:8632963-8632982 None:intergenic 35.0%
AGTATCATAGGTGATCTCTT+AGG + chr1_3:8633147-8633166 Msa0101970:intron 35.0%
GTATCATAGGTGATCTCTTA+GGG + chr1_3:8633148-8633167 Msa0101970:intron 35.0%
TATCATAGGTGATCTCTTAG+GGG + chr1_3:8633149-8633168 Msa0101970:intron 35.0%
TCTTTGTAACTCAAGCAACA+TGG + chr1_3:8633243-8633262 Msa0101970:intron 35.0%
! AGAGTATCAGAAACCGTTTA+GGG - chr1_3:8633299-8633318 None:intergenic 35.0%
!! AAGAGTATCAGAAACCGTTT+AGG - chr1_3:8633300-8633319 None:intergenic 35.0%
TAAACGGTTTCTGATACTCT+TGG + chr1_3:8633299-8633318 Msa0101970:intron 35.0%
CCTGCTCATATTTAATTACG+AGG - chr1_3:8633332-8633351 None:intergenic 35.0%
CCTCGTAATTAAATATGAGC+AGG + chr1_3:8633329-8633348 Msa0101970:intron 35.0%
TGAGCAGAGAATGTAGATAT+TGG + chr1_3:8633363-8633382 Msa0101970:intron 35.0%
!! AAATTAGAGCATTGACCGTT+AGG + chr1_3:8633437-8633456 Msa0101970:intron 35.0%
AAAAGACCACAATCACCTAA+CGG - chr1_3:8633455-8633474 None:intergenic 35.0%
GCAGGAACTAAAAGAGATAT+AGG - chr1_3:8633588-8633607 None:intergenic 35.0%
GAAGATGCAGATTAGTGTTT+CGG + chr1_3:8633609-8633628 Msa0101970:intron 35.0%
AAGATGCAGATTAGTGTTTC+GGG + chr1_3:8633610-8633629 Msa0101970:intron 35.0%
TACCACTGTAAACTCACATT+AGG - chr1_3:8633757-8633776 None:intergenic 35.0%
TAAGACAGACCTATATTCTG+GGG - chr1_3:8634041-8634060 None:intergenic 35.0%
CTAAGACAGACCTATATTCT+GGG - chr1_3:8634042-8634061 None:intergenic 35.0%
! TCTAAGACAGACCTATATTC+TGG - chr1_3:8634043-8634062 None:intergenic 35.0%
! AGAGCAAAATTCTAAGAGTC+AGG + chr1_3:8634078-8634097 Msa0101970:CDS 35.0%
! AAAATTCTAAGAGTCAGGAC+AGG + chr1_3:8634083-8634102 Msa0101970:CDS 35.0%
CAAGTTAAGAACTCCAAAGA+TGG + chr1_3:8634115-8634134 Msa0101970:CDS 35.0%
AATGACAGAAAACCCATCTT+TGG - chr1_3:8634131-8634150 None:intergenic 35.0%
TAATGGAGAAGTTGAAAACC+CGG - chr1_3:8634340-8634359 None:intergenic 35.0%
GAAAAATTTCCGATTCCGAA+TGG + chr1_3:8634437-8634456 Msa0101970:three_prime_UTR 35.0%
ACAAAAAGACCATTCGGAAT+CGG - chr1_3:8634449-8634468 None:intergenic 35.0%
! TTAGAAGGATTTGAAGGTAC+TGG + chr1_3:8634498-8634517 Msa0101970:three_prime_UTR 35.0%
GGATTTAAATCATGCAGATG+AGG + chr1_3:8634664-8634683 Msa0101970:three_prime_UTR 35.0%
GTGATGAGTGAAGATACCAT+TGG - chr1_3:8627825-8627844 None:intergenic 40.0%
CACAAAAAATGGATCGCGAT+CGG - chr1_3:8627927-8627946 None:intergenic 40.0%
TGCAAAATGCACAATTCCAG+AGG + chr1_3:8628004-8628023 Msa0101970:CDS 40.0%
TCATCTTGTTCTTCTTCCTC+TGG - chr1_3:8628023-8628042 None:intergenic 40.0%
CAACGTGAAAGAGAAAGAGA+AGG + chr1_3:8628046-8628065 Msa0101970:CDS 40.0%
TGAAAGAGAAAGAGAAGGAG+AGG + chr1_3:8628051-8628070 Msa0101970:CDS 40.0%
! AAAATCGAGTGTTGTTCGAG+TGG + chr1_3:8628074-8628093 Msa0101970:CDS 40.0%
AATGTCATGGTTTAGTACCG+TGG + chr1_3:8628417-8628436 Msa0101970:intron 40.0%
ATGTCATGGTTTAGTACCGT+GGG + chr1_3:8628418-8628437 Msa0101970:intron 40.0%
CTCGCAAAACTAATGCGAAT+AGG - chr1_3:8628472-8628491 None:intergenic 40.0%
!!! CTATTCGCATTAGTTTTGCG+AGG + chr1_3:8628470-8628489 Msa0101970:intron 40.0%
!!! ATTAGTTTTGCGAGGCTGTT+TGG + chr1_3:8628478-8628497 Msa0101970:intron 40.0%
!!! TTAGTTTTGCGAGGCTGTTT+GGG + chr1_3:8628479-8628498 Msa0101970:intron 40.0%
CACACACGTACACATACATA+TGG - chr1_3:8628717-8628736 None:intergenic 40.0%
TGAATTCAAATCAAGACCCC+TGG - chr1_3:8628812-8628831 None:intergenic 40.0%
TAATCAGTTTCCTGAGGCAA+TGG + chr1_3:8629016-8629035 Msa0101970:CDS 40.0%
GCATCAAAGGAGATATTGCA+CGG + chr1_3:8629262-8629281 Msa0101970:CDS 40.0%
CATCAAAGGAGATATTGCAC+GGG + chr1_3:8629263-8629282 Msa0101970:CDS 40.0%
TTTCCACCTGAAGCTTGAAA+CGG - chr1_3:8629299-8629318 None:intergenic 40.0%
TTTCCTCAATCACTGGACTT+GGG + chr1_3:8629337-8629356 Msa0101970:CDS 40.0%
AATCACTGGACTTGGGTTTA+GGG + chr1_3:8629344-8629363 Msa0101970:CDS 40.0%
AAAACAAGCTCACAGAACTC+GGG - chr1_3:8629404-8629423 None:intergenic 40.0%
GAAAACAAGCTCACAGAACT+CGG - chr1_3:8629405-8629424 None:intergenic 40.0%
ACCAGATCCAATCTGATCAA+GGG - chr1_3:8629457-8629476 None:intergenic 40.0%
GTTAATAATTGGTCGACCAG+AGG + chr1_3:8629608-8629627 Msa0101970:CDS 40.0%
AAATTGGTAGGATGGTTTCG+TGG + chr1_3:8629690-8629709 Msa0101970:CDS 40.0%
!! ATCTTTAACCAGAGCACTGT+GGG - chr1_3:8629796-8629815 None:intergenic 40.0%
CTTGGAAAAGCTACATGAGA+AGG + chr1_3:8630145-8630164 Msa0101970:CDS 40.0%
TAAAAGTGAAGACAGCATCG+GGG + chr1_3:8630250-8630269 Msa0101970:CDS 40.0%
CATTGCATGCTCATGGTAAT+TGG - chr1_3:8630321-8630340 None:intergenic 40.0%
TGCAATGTACGTTGCAAAGA+AGG + chr1_3:8630334-8630353 Msa0101970:CDS 40.0%
GGGATGACAATAAAGGAGTA+TGG + chr1_3:8630455-8630474 Msa0101970:CDS 40.0%
TCTAATAGAGCACAAGCCAT+CGG + chr1_3:8630484-8630503 Msa0101970:CDS 40.0%
GACAAAAGAGGACGTTCAAA+TGG + chr1_3:8630548-8630567 Msa0101970:CDS 40.0%
CTGAGAAAATCAACAGGAGA+TGG - chr1_3:8630593-8630612 None:intergenic 40.0%
AGGTGAATCCTTGACCTTAT+TGG - chr1_3:8630666-8630685 None:intergenic 40.0%
! CAGCAATAGTTCCATTGGTT+TGG - chr1_3:8630823-8630842 None:intergenic 40.0%
CTGATCAGCAATAGTTCCAT+TGG - chr1_3:8630828-8630847 None:intergenic 40.0%
! TACACATGCTTAAGAGTGCA+TGG + chr1_3:8630897-8630916 Msa0101970:CDS 40.0%
TAAAGTGGATGTTCTGTCTC+TGG - chr1_3:8630926-8630945 None:intergenic 40.0%
!! AGTAATCGCTTGCTATATGC+AGG + chr1_3:8631036-8631055 Msa0101970:CDS 40.0%
AATTGCATGCTGCAAAAGAC+TGG + chr1_3:8631078-8631097 Msa0101970:CDS 40.0%
ATTGCATGCTGCAAAAGACT+GGG + chr1_3:8631079-8631098 Msa0101970:CDS 40.0%
AGACTGGGTGATTCAGTTAA+AGG + chr1_3:8631094-8631113 Msa0101970:CDS 40.0%
TGGGTGATTCAGTTAAAGGA+GGG + chr1_3:8631098-8631117 Msa0101970:CDS 40.0%
CTCAAATATTTCGGTGAGCT+TGG + chr1_3:8631145-8631164 Msa0101970:CDS 40.0%
GTTTGAAGGACAATTATGGG+GGG - chr1_3:8631232-8631251 None:intergenic 40.0%
! CACTATCGGTGTCTATTGTA+TGG - chr1_3:8631531-8631550 None:intergenic 40.0%
CATACAATAGACACCGATAG+TGG + chr1_3:8631529-8631548 Msa0101970:intron 40.0%
ACCATAGTCTCATCCACTAT+CGG - chr1_3:8631545-8631564 None:intergenic 40.0%
TTGTGCACACATACAACCAT+AGG - chr1_3:8631687-8631706 None:intergenic 40.0%
ACATAGACCTTCAACACCTT+CGG - chr1_3:8631898-8631917 None:intergenic 40.0%
ACGAAGTAATACTGCTGATG+TGG + chr1_3:8631928-8631947 Msa0101970:intron 40.0%
TCTTGAGGTCTGCATCAATT+GGG + chr1_3:8632191-8632210 Msa0101970:intron 40.0%
ACTATCCTAGTTTCGCTGTT+AGG + chr1_3:8632618-8632637 Msa0101970:intron 40.0%
CTATCCTAGTTTCGCTGTTA+GGG + chr1_3:8632619-8632638 Msa0101970:intron 40.0%
TTTCGCTGTTAGGGCAATAA+CGG + chr1_3:8632628-8632647 Msa0101970:intron 40.0%
CAAACACAACTCCACAAAAC+CGG - chr1_3:8633045-8633064 None:intergenic 40.0%
AGTTCTTAGAAACTGTGGCT+GGG - chr1_3:8633073-8633092 None:intergenic 40.0%
TAGTTCTTAGAAACTGTGGC+TGG - chr1_3:8633074-8633093 None:intergenic 40.0%
! GTGGTCTTTTAATGTGAAGC+AGG + chr1_3:8633465-8633484 Msa0101970:intron 40.0%
CTGTAAACTCACATTAGGCA+AGG - chr1_3:8633752-8633771 None:intergenic 40.0%
TGCCTAATGTGAGTTTACAG+TGG + chr1_3:8633752-8633771 Msa0101970:intron 40.0%
! TTTTCTGTAAACAGCACGGA+AGG + chr1_3:8633804-8633823 Msa0101970:intron 40.0%
AAAGTATGTTGTCTCTGTGC+AGG + chr1_3:8633835-8633854 Msa0101970:intron 40.0%
GGAAAGAGGTTCAAGATCTT+AGG + chr1_3:8633876-8633895 Msa0101970:CDS 40.0%
AAGATCTTAGGACAAATGCG+AGG + chr1_3:8633888-8633907 Msa0101970:CDS 40.0%
!! CTTTGGAGTTCTTAACTTGC+TGG - chr1_3:8634114-8634133 None:intergenic 40.0%
ACGATAACAAGCCGTACTAA+TGG - chr1_3:8634357-8634376 None:intergenic 40.0%
!! ATTTGAAGGTACTGGTTGTG+TGG + chr1_3:8634506-8634525 Msa0101970:three_prime_UTR 40.0%
TGATGATAGCTTCTCCTTGA+AGG + chr1_3:8634553-8634572 Msa0101970:three_prime_UTR 40.0%
!!! CCATTTTTTGTGAATCGCGG+CGG + chr1_3:8627935-8627954 Msa0101970:five_prime_UTR 45.0%
GAACTTCCGCCATTGATACA+TGG - chr1_3:8627961-8627980 None:intergenic 45.0%
GGAAGGGGTAAAGTTGTAAC+TGG + chr1_3:8628095-8628114 Msa0101970:CDS 45.0%
TCCTCGATCGAAGAAGCAAA+CGG - chr1_3:8628135-8628154 None:intergenic 45.0%
TTTAGTACCGTGGGTCTGTT+CGG + chr1_3:8628427-8628446 Msa0101970:intron 45.0%
ACATACATATGGCCCCTGTT+TGG - chr1_3:8628706-8628725 None:intergenic 45.0%
! GCAACTTCCTGGTAACGATT+GGG + chr1_3:8628868-8628887 Msa0101970:CDS 45.0%
! CAACTTCCTGGTAACGATTG+GGG + chr1_3:8628869-8628888 Msa0101970:CDS 45.0%
! GCAATCTGAAAGTACGAGCA+CGG + chr1_3:8628956-8628975 Msa0101970:CDS 45.0%
CGCAATATCCCAACACAATC+AGG - chr1_3:8628987-8629006 None:intergenic 45.0%
! AGTGTCATTACCATTGCCTC+AGG - chr1_3:8629029-8629048 None:intergenic 45.0%
TATCACCCGTTTCAAGCTTC+AGG + chr1_3:8629290-8629309 Msa0101970:CDS 45.0%
TTCCACCTGAAGCTTGAAAC+GGG - chr1_3:8629298-8629317 None:intergenic 45.0%
CTTTCCTCAATCACTGGACT+TGG + chr1_3:8629336-8629355 Msa0101970:CDS 45.0%
AAACCCAAGTCCAGTGATTG+AGG - chr1_3:8629343-8629362 None:intergenic 45.0%
CAATCACTGGACTTGGGTTT+AGG + chr1_3:8629343-8629362 Msa0101970:CDS 45.0%
AAACAAGCTCACAGAACTCG+GGG - chr1_3:8629403-8629422 None:intergenic 45.0%
CATTGCATGATCAACCACCA+AGG + chr1_3:8629424-8629443 Msa0101970:CDS 45.0%
AGGCAAACCCTTGATCAGAT+TGG + chr1_3:8629447-8629466 Msa0101970:CDS 45.0%
ACCCTTGATCAGATTGGATC+TGG + chr1_3:8629453-8629472 Msa0101970:CDS 45.0%
CACCAGATCCAATCTGATCA+AGG - chr1_3:8629458-8629477 None:intergenic 45.0%
TTTAATAGCCCACAGTGCTC+TGG + chr1_3:8629785-8629804 Msa0101970:CDS 45.0%
!! CATCTTTAACCAGAGCACTG+TGG - chr1_3:8629797-8629816 None:intergenic 45.0%
CAGCAAGCAAGACTATGATG+AGG + chr1_3:8630025-8630044 Msa0101970:CDS 45.0%
GCAAGACTATGATGAGGCAA+TGG + chr1_3:8630031-8630050 Msa0101970:CDS 45.0%
GCTCATGGTAATTGGCAGAA+CGG - chr1_3:8630313-8630332 None:intergenic 45.0%
CAACGTACATTGCATGCTCA+TGG - chr1_3:8630328-8630347 None:intergenic 45.0%
ATGTACGTTGCAAAGAAGGC+TGG + chr1_3:8630338-8630357 Msa0101970:CDS 45.0%
TGTACGTTGCAAAGAAGGCT+GGG + chr1_3:8630339-8630358 Msa0101970:CDS 45.0%
TGGTAGTTATGAAGAGGCCT+TGG + chr1_3:8630400-8630419 Msa0101970:CDS 45.0%
AGTCTTGAATCAAGTCAGGC+AGG + chr1_3:8630434-8630453 Msa0101970:CDS 45.0%
GTCTTGAATCAAGTCAGGCA+GGG + chr1_3:8630435-8630454 Msa0101970:CDS 45.0%
TCAGGCAGGGATGACAATAA+AGG + chr1_3:8630448-8630467 Msa0101970:CDS 45.0%
AGAATCTGAATCGTCTCCGA+TGG - chr1_3:8630503-8630522 None:intergenic 45.0%
ATTAGGCTTTGCACAGACGA+GGG + chr1_3:8630524-8630543 Msa0101970:CDS 45.0%
TCATCACCCTCATTCCCTTA+TGG + chr1_3:8630622-8630641 Msa0101970:CDS 45.0%
TTGTTAATCTCCACCTGAGC+AGG - chr1_3:8630686-8630705 None:intergenic 45.0%
! AAGACGGCCCTTTTCCTTTT+CGG - chr1_3:8630858-8630877 None:intergenic 45.0%
! CCTTTTCACGCCTTTCAAGA+CGG - chr1_3:8630874-8630893 None:intergenic 45.0%
! CGTCTTGAAAGGCGTGAAAA+GGG + chr1_3:8630872-8630891 Msa0101970:CDS 45.0%
CTGGGTGATTCAGTTAAAGG+AGG + chr1_3:8631097-8631116 Msa0101970:CDS 45.0%
GGGTGATTCAGTTAAAGGAG+GGG + chr1_3:8631099-8631118 Msa0101970:CDS 45.0%
! TCACTGAAAGTGTGAGGCAA+GGG - chr1_3:8631267-8631286 None:intergenic 45.0%
! ATCACTGAAAGTGTGAGGCA+AGG - chr1_3:8631268-8631287 None:intergenic 45.0%
! CCTTGATCACTGAAAGTGTG+AGG - chr1_3:8631273-8631292 None:intergenic 45.0%
CCTCACACTTTCAGTGATCA+AGG + chr1_3:8631270-8631289 Msa0101970:CDS 45.0%
GAAGCTTGAGCAGGAATCAA+AGG + chr1_3:8631306-8631325 Msa0101970:CDS 45.0%
GCAGGAATCAAAGGTGATTG+AGG + chr1_3:8631315-8631334 Msa0101970:CDS 45.0%
GGAATCAAAGGTGATTGAGG+AGG + chr1_3:8631318-8631337 Msa0101970:CDS 45.0%
!! ACCGATAGTGGATGAGACTA+TGG + chr1_3:8631541-8631560 Msa0101970:intron 45.0%
GGAACGATGCTTACTTGAAG+CGG + chr1_3:8631812-8631831 Msa0101970:intron 45.0%
TGGTAGTAGAGTAGCGTGAT+GGG + chr1_3:8631948-8631967 Msa0101970:intron 45.0%
TTATAAGCAGTGAGGCTAGC+TGG + chr1_3:8631991-8632010 Msa0101970:intron 45.0%
GCAGAGAATTGCAATCTCTC+TGG + chr1_3:8632051-8632070 Msa0101970:intron 45.0%
GTCTTGAGGTCTGCATCAAT+TGG + chr1_3:8632190-8632209 Msa0101970:intron 45.0%
ATTGCCCTAACAGCGAAACT+AGG - chr1_3:8632626-8632645 None:intergenic 45.0%
TGCTTGAACTCTCTGAGCAA+AGG + chr1_3:8633395-8633414 Msa0101970:intron 45.0%
CATTGACCGTTAGGTGATTG+TGG + chr1_3:8633446-8633465 Msa0101970:intron 45.0%
CACTAATCTGCATCTTCAGC+AGG - chr1_3:8633606-8633625 None:intergenic 45.0%
GCATGCACTCATTCCATTTG+CGG + chr1_3:8633978-8633997 Msa0101970:CDS 45.0%
AACAAGCAATGGATCCACTC+CGG + chr1_3:8634183-8634202 Msa0101970:CDS 45.0%
! GCATTTCCAGATCTGAGATC+CGG - chr1_3:8634205-8634224 None:intergenic 45.0%
GGAAATGCATCATCTAGCAG+TGG + chr1_3:8634217-8634236 Msa0101970:CDS 45.0%
GAGCGAAAAGCTGAAAGGAA+GGG - chr1_3:8634265-8634284 None:intergenic 45.0%
TTGCAGGCAGCTTCTTCCAA+TGG + chr1_3:8627806-8627825 Msa0101970:five_prime_UTR 50.0%
CCGCCGCGATTCACAAAAAA+TGG - chr1_3:8627938-8627957 None:intergenic 50.0%
GCGGAAGTTCGAATTCTTCG+AGG + chr1_3:8627971-8627990 Msa0101970:CDS 50.0%
! TCGAGTGTTGTTCGAGTGGA+AGG + chr1_3:8628078-8628097 Msa0101970:CDS 50.0%
! CGAGTGTTGTTCGAGTGGAA+GGG + chr1_3:8628079-8628098 Msa0101970:CDS 50.0%
! GAGTGTTGTTCGAGTGGAAG+GGG + chr1_3:8628080-8628099 Msa0101970:CDS 50.0%
ACCGTTTGCTTCTTCGATCG+AGG + chr1_3:8628131-8628150 Msa0101970:CDS 50.0%
AGTCAATCCGAACAGACCCA+CGG - chr1_3:8628437-8628456 None:intergenic 50.0%
GCACATGGGTGCCTATATGT+TGG + chr1_3:8628740-8628759 Msa0101970:intron 50.0%
TTACCAGCAACGCAACTTCC+TGG + chr1_3:8628857-8628876 Msa0101970:intron 50.0%
TTACCAGGAAGTTGCGTTGC+TGG - chr1_3:8628863-8628882 None:intergenic 50.0%
! CGCAACTTCCTGGTAACGAT+TGG + chr1_3:8628867-8628886 Msa0101970:CDS 50.0%
AGGCACAAAGCTGATTGCTG+GGG - chr1_3:8628912-8628931 None:intergenic 50.0%
CAGGCACAAAGCTGATTGCT+GGG - chr1_3:8628913-8628932 None:intergenic 50.0%
TCAGGCACAAAGCTGATTGC+TGG - chr1_3:8628914-8628933 None:intergenic 50.0%
! GCAATCAGCTTTGTGCCTGA+AGG + chr1_3:8628914-8628933 Msa0101970:CDS 50.0%
TGCATGATCAACCACCAAGG+AGG + chr1_3:8629427-8629446 Msa0101970:CDS 50.0%
TGATCAAGGGTTTGCCTCCT+TGG - chr1_3:8629444-8629463 None:intergenic 50.0%
! TTGATGGACGTGGTCCTTGT+TGG + chr1_3:8629649-8629668 Msa0101970:CDS 50.0%
! TGATGGACGTGGTCCTTGTT+GGG + chr1_3:8629650-8629669 Msa0101970:CDS 50.0%
AGATGCTGCAGCTACTTCTG+AGG + chr1_3:8629974-8629993 Msa0101970:CDS 50.0%
TCGACGTGGAAACAGCAATC+AGG + chr1_3:8630282-8630301 Msa0101970:CDS 50.0%
CGACGTGGAAACAGCAATCA+GGG + chr1_3:8630283-8630302 Msa0101970:CDS 50.0%
AGAAGGCTGGGAGACATGAA+TGG + chr1_3:8630351-8630370 Msa0101970:CDS 50.0%
CATTAGGCTTTGCACAGACG+AGG + chr1_3:8630523-8630542 Msa0101970:CDS 50.0%
ACAGACGAGGGTGACAAAAG+AGG + chr1_3:8630536-8630555 Msa0101970:CDS 50.0%
AGGAAAAGGGCCGTCTTGAA+AGG + chr1_3:8630861-8630880 Msa0101970:CDS 50.0%
! CCGTCTTGAAAGGCGTGAAA+AGG + chr1_3:8630871-8630890 Msa0101970:CDS 50.0%
AGTGGATGTTCTGTCTCTGG+AGG - chr1_3:8630923-8630942 None:intergenic 50.0%
TATGCAGGCGCATGATCACA+AGG + chr1_3:8631051-8631070 Msa0101970:CDS 50.0%
ATGCAGGCGCATGATCACAA+GGG + chr1_3:8631052-8631071 Msa0101970:CDS 50.0%
AAGGAGGGGATCCATCTCTT+TGG + chr1_3:8631113-8631132 Msa0101970:CDS 50.0%
AGGAGGGGATCCATCTCTTT+GGG + chr1_3:8631114-8631133 Msa0101970:CDS 50.0%
AGTACATCCGCCCAAAGAGA+TGG - chr1_3:8631127-8631146 None:intergenic 50.0%
! CAAGTAAGCATCGTTCCTGC+TGG - chr1_3:8631809-8631828 None:intergenic 50.0%
AGGATATTGGGTCAGCAGAG+TGG + chr1_3:8631871-8631890 Msa0101970:intron 50.0%
GGATATTGGGTCAGCAGAGT+GGG + chr1_3:8631872-8631891 Msa0101970:intron 50.0%
GTGGTAGTAGAGTAGCGTGA+TGG + chr1_3:8631947-8631966 Msa0101970:intron 50.0%
!! GTAGAGTAGCGTGATGGGTT+TGG + chr1_3:8631953-8631972 Msa0101970:intron 50.0%
TTTCCGCTATTTGCCCGTGA+CGG + chr1_3:8632947-8632966 Msa0101970:intron 50.0%
ATACCGTCACGGGCAAATAG+CGG - chr1_3:8632953-8632972 None:intergenic 50.0%
!! CAAAACCGGCTTGTGAGATG+AGG - chr1_3:8633031-8633050 None:intergenic 50.0%
!! CATCTCACAAGCCGGTTTTG+TGG + chr1_3:8633031-8633050 Msa0101970:intron 50.0%
CTTAGAAACTGTGGCTGGGT+TGG - chr1_3:8633069-8633088 None:intergenic 50.0%
CATAGGTGATCTCTTAGGGG+TGG + chr1_3:8633152-8633171 Msa0101970:intron 50.0%
AGGAAGACACACAGGCAATG+AGG + chr1_3:8633855-8633874 Msa0101970:intron 50.0%
CACACAGGCAATGAGGAAAG+AGG + chr1_3:8633862-8633881 Msa0101970:CDS 50.0%
ATGCACATGAAGTGCACAGC+AGG - chr1_3:8633962-8633981 None:intergenic 50.0%
TCATTCCATTTGCGGTGCCT+TGG + chr1_3:8633986-8634005 Msa0101970:CDS 50.0%
!! TATATTCTGGGGCACACTCG+GGG - chr1_3:8634030-8634049 None:intergenic 50.0%
!! CTATATTCTGGGGCACACTC+GGG - chr1_3:8634031-8634050 None:intergenic 50.0%
!! CCTATATTCTGGGGCACACT+CGG - chr1_3:8634032-8634051 None:intergenic 50.0%
TCATCTAGCAGTGGCTTCTG+AGG + chr1_3:8634226-8634245 Msa0101970:CDS 50.0%
GGAGCGAAAAGCTGAAAGGA+AGG - chr1_3:8634266-8634285 None:intergenic 50.0%
GGATGGAGCGAAAAGCTGAA+AGG - chr1_3:8634270-8634289 None:intergenic 50.0%
TTGATGAGCGAGCCATTCCT+GGG - chr1_3:8634417-8634436 None:intergenic 50.0%
TGTACGTGTGTGCGAGCACA+TGG + chr1_3:8628725-8628744 Msa0101970:intron 55.0%
GTACGTGTGTGCGAGCACAT+GGG + chr1_3:8628726-8628745 Msa0101970:intron 55.0%
CGTCTTCCCCAATCGTTACC+AGG - chr1_3:8628878-8628897 None:intergenic 55.0%
ACGGCGAGTCCTGATTGTGT+TGG + chr1_3:8628975-8628994 Msa0101970:CDS 55.0%
CGGCGAGTCCTGATTGTGTT+GGG + chr1_3:8628976-8628995 Msa0101970:CDS 55.0%
CACCCGTTTCAAGCTTCAGG+TGG + chr1_3:8629293-8629312 Msa0101970:CDS 55.0%
CACTGGACTTGGGTTTAGGG+TGG + chr1_3:8629347-8629366 Msa0101970:CDS 55.0%
! GGACTTGGGTTTAGGGTGGA+CGG + chr1_3:8629351-8629370 Msa0101970:CDS 55.0%
TCAAGGGTTTGCCTCCTTGG+TGG - chr1_3:8629441-8629460 None:intergenic 55.0%
TGGTCCTTGTTGGGCTTTCG+AGG + chr1_3:8629659-8629678 Msa0101970:CDS 55.0%
GGTCCTTGTTGGGCTTTCGA+GGG + chr1_3:8629660-8629679 Msa0101970:CDS 55.0%
TCTCCCTCGAAAGCCCAACA+AGG - chr1_3:8629666-8629685 None:intergenic 55.0%
CGGGGAACTTAAGTTCGACG+TGG + chr1_3:8630268-8630287 Msa0101970:CDS 55.0%
GGTCAAGGATTCACCTGCTC+AGG + chr1_3:8630670-8630689 Msa0101970:CDS 55.0%
CAAGGATTCACCTGCTCAGG+TGG + chr1_3:8630673-8630692 Msa0101970:CDS 55.0%
AGGGGATCCATCTCTTTGGG+CGG + chr1_3:8631117-8631136 Msa0101970:CDS 55.0%
CATTGCTCGGAAGCTTGAGC+AGG + chr1_3:8631297-8631316 Msa0101970:CDS 55.0%
CCTGCTGGACTTCTTCAGTC+AGG - chr1_3:8631794-8631813 None:intergenic 55.0%
CCTGACTGAAGAAGTCCAGC+AGG + chr1_3:8631791-8631810 Msa0101970:intron 55.0%
! AGTGAGGCTAGCTGGAGAGA+GGG + chr1_3:8631999-8632018 Msa0101970:intron 55.0%
!! ATCTCTCTGGAGCTCAGCTC+TGG + chr1_3:8632064-8632083 Msa0101970:intron 55.0%
!! TCTCTCTGGAGCTCAGCTCT+GGG + chr1_3:8632065-8632084 Msa0101970:intron 55.0%
!! AGCTCAGCTCTGGGGTGATT+GGG + chr1_3:8632074-8632093 Msa0101970:intron 55.0%
CTCTGTGCAGGAAGACACAC+AGG + chr1_3:8633847-8633866 Msa0101970:intron 55.0%
ACATGAAGTGCACAGCAGGC+AGG - chr1_3:8633958-8633977 None:intergenic 55.0%
!! TATCGCCAAGGCACCGCAAA+TGG - chr1_3:8633994-8634013 None:intergenic 55.0%
CCGAGTGTGCCCCAGAATAT+AGG + chr1_3:8634029-8634048 Msa0101970:CDS 55.0%
TCCACTCCGGATCTCAGATC+TGG + chr1_3:8634196-8634215 Msa0101970:CDS 55.0%
! TCCAGATCTGAGATCCGGAG+TGG - chr1_3:8634200-8634219 None:intergenic 55.0%
CTTGATGAGCGAGCCATTCC+TGG - chr1_3:8634418-8634437 None:intergenic 55.0%
TCGCGGCGGCCATGTATCAA+TGG + chr1_3:8627949-8627968 Msa0101970:exon 60.0%
CGGCGGCCATGTATCAATGG+CGG + chr1_3:8627952-8627971 Msa0101970:exon 60.0%
!! GAGTGGGCCGAAGGTGTTGA+AGG + chr1_3:8631888-8631907 Msa0101970:intron 60.0%
! CAGTGAGGCTAGCTGGAGAG+AGG + chr1_3:8631998-8632017 Msa0101970:intron 60.0%
!! CTCTCTGGAGCTCAGCTCTG+GGG + chr1_3:8632066-8632085 Msa0101970:intron 60.0%
!! GAGCTCAGCTCTGGGGTGAT+TGG + chr1_3:8632073-8632092 Msa0101970:intron 60.0%
GCGGTCCTCATCTCACAAGC+CGG + chr1_3:8633023-8633042 Msa0101970:intron 60.0%
GTGCACAGCAGGCAGGTCTA+GGG - chr1_3:8633951-8633970 None:intergenic 60.0%
AGTGCACAGCAGGCAGGTCT+AGG - chr1_3:8633952-8633971 None:intergenic 60.0%
GGGTCAGCAGAGTGGGCCGA+AGG + chr1_3:8631879-8631898 Msa0101970:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8627764 8634732 8627764 ID=Msa0101970;Name=Msa0101970
chr1_3 mRNA 8627764 8634732 8627764 ID=Msa0101970-mRNA-1;Parent=Msa0101970;Name=Msa0101970-mRNA-1;_AED=0.22;_eAED=0.22;_QI=196|1|1|1|1|1|5|486|968
chr1_3 exon 8627764 8628217 8627764 ID=Msa0101970-mRNA-1:exon:3453;Parent=Msa0101970-mRNA-1
chr1_3 exon 8628864 8629037 8628864 ID=Msa0101970-mRNA-1:exon:3454;Parent=Msa0101970-mRNA-1
chr1_3 exon 8629183 8629506 8629183 ID=Msa0101970-mRNA-1:exon:3455;Parent=Msa0101970-mRNA-1
chr1_3 exon 8629606 8631366 8629606 ID=Msa0101970-mRNA-1:exon:3456;Parent=Msa0101970-mRNA-1
chr1_3 exon 8633857 8634732 8633857 ID=Msa0101970-mRNA-1:exon:3457;Parent=Msa0101970-mRNA-1
chr1_3 five_prime_UTR 8627764 8627959 8627764 ID=Msa0101970-mRNA-1:five_prime_utr;Parent=Msa0101970-mRNA-1
chr1_3 CDS 8627960 8628217 8627960 ID=Msa0101970-mRNA-1:cds;Parent=Msa0101970-mRNA-1
chr1_3 CDS 8628864 8629037 8628864 ID=Msa0101970-mRNA-1:cds;Parent=Msa0101970-mRNA-1
chr1_3 CDS 8629183 8629506 8629183 ID=Msa0101970-mRNA-1:cds;Parent=Msa0101970-mRNA-1
chr1_3 CDS 8629606 8631366 8629606 ID=Msa0101970-mRNA-1:cds;Parent=Msa0101970-mRNA-1
chr1_3 CDS 8633857 8634246 8633857 ID=Msa0101970-mRNA-1:cds;Parent=Msa0101970-mRNA-1
chr1_3 three_prime_UTR 8634247 8634732 8634247 ID=Msa0101970-mRNA-1:three_prime_utr;Parent=Msa0101970-mRNA-1
Gene Sequence

>Msa0101970

ATGTATCAATGGCGGAAGTTCGAATTCTTCGAGGAGAAGTACGTTGCAAAATGCACAATTCCAGAGGAAGAAGAACAAGATGACAACAACGTGAAAGAGAAAGAGAAGGAGAGGAAAATCGAGTGTTGTTCGAGTGGAAGGGGTAAAGTTGTAACTGGTTTTGATGATGGAACCGTTTGCTTCTTCGATCGAGGACTCAAGTTCAATTATTCTTTTCAACTTCATTCTTCTTCTGTTCTCTTTATTCAACAACTCAAGCAACGCAACTTCCTGGTAACGATTGGGGAAGACGAACAACTTACTCCCCAGCAATCAGCTTTGTGCCTGAAGGTTTTTGACTTAGATAAGATGCAATCTGAAAGTACGAGCACGGCGAGTCCTGATTGTGTTGGGATATTGCGTATATTCACTAATCAGTTTCCTGAGGCAATGATTACATCTTTTATTGTCTTAGAGGAAGTGCCTCCAATACTACTCATAGCTATTGGCTTAGACAATGGTTCAATTTACTGCATCAAAGGAGATATTGCACGGGAGCGTATCACCCGTTTCAAGCTTCAGGTGGAAAACCATTCAGACAAAACACTTTCCTCAATCACTGGACTTGGGTTTAGGGTGGACGGTCAATCACTTCAGTTGTTTGCGGTAACCCCGAGTTCTGTGAGCTTGTTTTCATTGCATGATCAACCACCAAGGAGGCAAACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTACAATGAGTGACCGTTCTGAGTTAATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGACGTGGTCCTTGTTGGGCTTTCGAGGGAGAAAAAAAATTGGTAGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACTTGAAGAATCGTTTAATAGCCCACAGTGCTCTGGTTAAAGATGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGACAGACAAATCAACTTTATCTATTGGGGAAAAGGATATGGAAAGCAAATTAGACATGTTATTCAAGAAAAACCTATATACTGTGGCAATTAATCTTGTTCAGACTCAACAAGCAGATGCTGCAGCTACTTCTGAGGTTCTGAGAAAATATGGGGATCATCTATACAGCAAGCAAGACTATGATGAGGCAATGGCTCAGTACATAAATACTATTGGTCAACTTGAACCTTCTTATGTGATACAAAAGTTTTTGGATGCTCAGAGAATCTACAACCTCACAAATTACTTGGAAAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTGAACTGTTACACCAAATTGAAAGATGTTGAAAAACTAAACTTGTTTATTAAAAGTGAAGACAGCATCGGGGAACTTAAGTTCGACGTGGAAACAGCAATCAGGGTTTGCCGTTCTGCCAATTACCATGAGCATGCAATGTACGTTGCAAAGAAGGCTGGGAGACATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGTTATGAAGAGGCCTTGGAATATATTTCTAGTCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGTAAAATTCTAATAGAGCACAAGCCATCGGAGACGATTCAGATTCTCATTAGGCTTTGCACAGACGAGGGTGACAAAAGAGGACGTTCAAATGGTGTGTATGTGTCTATGTTGCCATCTCCTGTTGATTTTCTCAGCATTTTCGTTCATCACCCTCATTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGATTCACCTGCTCAGGTGGAGATTAACAATACCCTCTTAGAGTTGTATATATCCAACGAATTGAACTTTCCTTCAGTATCACAGTCTAATGAGGGTGCAGATTACCTTAACGTAGCATCAGAAAAAACATCAAAAATAAGTGCCCAAACCAATGGAACTATTGCTGATCAGAAAAGTTCCGAAAAGGAAAAGGGCCGTCTTGAAAGGCGTGAAAAGGGTCTACACATGCTTAAGAGTGCATGGCCTCCAGAGACAGAACATCCACTTTATGATGTTGATTTAGCTATTATACTGTGTGAAATGAATTCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAGGAAGTAATCGCTTGCTATATGCAGGCGCATGATCACAAGGGATTAATTGCATGCTGCAAAAGACTGGGTGATTCAGTTAAAGGAGGGGATCCATCTCTTTGGGCGGATGTACTCAAATATTTCGGTGAGCTTGGAGAAGATTGCTCCAAAGAAGTAAAAGAAGTTTTGAATTACATTGAAAGGGATAATATTTTACCCCCCATAATTGTCCTTCAAACTCTGTCAAAAAACCCTTGCCTCACACTTTCAGTGATCAAGGATTACATTGCTCGGAAGCTTGAGCAGGAATCAAAGGTGATTGAGGAGGACCGACAAGCTATTGAAAAATATCAGGAAGACACACAGGCAATGAGGAAAGAGGTTCAAGATCTTAGGACAAATGCGAGGATTTTTCAGCTTAGCAAGTGCACAGCATGCACTTTCACCCTAGACCTGCCTGCTGTGCACTTCATGTGCATGCACTCATTCCATTTGCGGTGCCTTGGCGATAATGAAAAAGAATGCCCCGAGTGTGCCCCAGAATATAGGTCTGTCTTAGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGAGTCAGGACAGGTTTTTCCAGCAAGTTAAGAACTCCAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATTATCAGCAAAACAAGCAATGGATCCACTCCGGATCTCAGATCTGGAAATGCATCATCTAGCAGTGGCTTCTGA
Protein sequence

>Msa0101970

MYQWRKFEFFEEKYVAKCTIPEEEEQDDNNVKEKEKERKIECCSSGRGKVVTGFDDGTVCFFDRGLKFNYSFQLHSSSVLFIQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQSESTSTASPDCVGILRIFTNQFPEAMITSFIVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFKLQVENHSDKTLSSITGLGFRVDGQSLQLFAVTPSSVSLFSLHDQPPRRQTLDQIGSGVNSVTMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLVGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKDVSHMLYEWGNIILIMTDKSTLSIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATSEVLRKYGDHLYSKQDYDEAMAQYINTIGQLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSEDSIGELKFDVETAIRVCRSANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPSETIQILIRLCTDEGDKRGRSNGVYVSMLPSPVDFLSIFVHHPHSLMDFLEKYTNKVKDSPAQVEINNTLLELYISNELNFPSVSQSNEGADYLNVASEKTSKISAQTNGTIADQKSSEKEKGRLERREKGLHMLKSAWPPETEHPLYDVDLAIILCEMNSFKDGLLYLYEKMKLYKEVIACYMQAHDHKGLIACCKRLGDSVKGGDPSLWADVLKYFGELGEDCSKEVKEVLNYIERDNILPPIIVLQTLSKNPCLTLSVIKDYIARKLEQESKVIEEDRQAIEKYQEDTQAMRKEVQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKSQDRFFQQVKNSKDGFSVIAEYFGKGIISKTSNGSTPDLRSGNASSSSGF*