Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103080 | sp|F4HWL4|SYYC2_ARATH | 65.265 | 737 | 242 | 6 | 21 | 753 | 22 | 748 | 0.0 | 1005 |
| Msa0103080 | sp|F4HWL4|SYYC2_ARATH | 68.595 | 363 | 111 | 2 | 10 | 372 | 389 | 748 | 5.85e-173 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103080 | A0A2K3NMU2 | 71.984 | 746 | 193 | 5 | 22 | 753 | 22 | 765 | 0.0 | 1103 |
| Msa0103080 | A0A2K3NMU2 | 76.280 | 371 | 88 | 0 | 2 | 372 | 395 | 765 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008830 | Msa0103080 | 0.851811 | 6.958479e-61 | -8.615850e-47 |
| Msa0057760 | Msa0103080 | 0.861364 | 1.080641e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103080 | MtrunA17_Chr1g0146461 | 96.458 | 480 | 17 | 0 | 1 | 480 | 1 | 480 | 0.0 | 959 |
| Msa0103080 | MtrunA17_Chr1g0146461 | 71.164 | 378 | 98 | 3 | 380 | 753 | 2 | 372 | 0.0 | 568 |
| Msa0103080 | MtrunA17_Chr1g0173201 | 82.920 | 363 | 62 | 0 | 10 | 372 | 22 | 384 | 0.0 | 641 |
| Msa0103080 | MtrunA17_Chr1g0173201 | 79.144 | 374 | 71 | 3 | 386 | 753 | 12 | 384 | 0.0 | 623 |
| Msa0103080 | MtrunA17_Chr1g0146441 | 96.350 | 137 | 5 | 0 | 617 | 753 | 1 | 137 | 4.05e-89 | 276 |
| Msa0103080 | MtrunA17_Chr1g0146441 | 75.912 | 137 | 33 | 0 | 236 | 372 | 1 | 137 | 2.65e-68 | 221 |
| Msa0103080 | MtrunA17_Chr1g0146451 | 95.082 | 61 | 3 | 0 | 497 | 557 | 1 | 61 | 1.56e-33 | 124 |
| Msa0103080 | MtrunA17_Chr1g0146451 | 56.627 | 83 | 36 | 0 | 118 | 200 | 2 | 84 | 2.74e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103080 | AT1G28350.1 | 65.265 | 737 | 242 | 6 | 21 | 753 | 22 | 748 | 0.0 | 1005 |
| Msa0103080 | AT1G28350.1 | 68.595 | 363 | 111 | 2 | 10 | 372 | 389 | 748 | 5.94e-174 | 518 |
| Msa0103080 | AT1G28350.2 | 65.265 | 737 | 242 | 6 | 21 | 753 | 22 | 748 | 0.0 | 1005 |
| Msa0103080 | AT1G28350.2 | 68.595 | 363 | 111 | 2 | 10 | 372 | 389 | 748 | 5.94e-174 | 518 |
| Msa0103080 | AT1G28350.3 | 65.173 | 692 | 227 | 6 | 66 | 753 | 1 | 682 | 0.0 | 942 |
| Msa0103080 | AT1G28350.3 | 68.595 | 363 | 111 | 2 | 10 | 372 | 323 | 682 | 9.93e-175 | 517 |
| Msa0103080 | AT2G33840.1 | 74.716 | 352 | 87 | 1 | 21 | 372 | 36 | 385 | 0.0 | 568 |
| Msa0103080 | AT2G33840.1 | 69.688 | 353 | 104 | 2 | 401 | 753 | 36 | 385 | 0.0 | 533 |
Find 195 sgRNAs with CRISPR-Local
Find 494 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATCTTTCCGTGGTTTA+AGG | 0.136700 | 1_3:+10107342 | Msa0103080:CDS |
| GCCAGTACTTCATTGAAATT+TGG | 0.185721 | 1_3:+10105832 | Msa0103080:CDS |
| GTTCTGAAGTGTTGCCTTAC+AGG | 0.188469 | 1_3:-10112582 | None:intergenic |
| TGCTAAGTTGAACAATAAAA+TGG | 0.211101 | 1_3:+10105779 | Msa0103080:CDS |
| CGATCCAACTCATTCAAAAT+AGG | 0.219124 | 1_3:-10112957 | None:intergenic |
| GTTCACTTCGTCCCATTATT+TGG | 0.224298 | 1_3:-10106095 | None:intergenic |
| CTCCTCATCTTCCATGTAAA+TGG | 0.232675 | 1_3:-10106958 | None:intergenic |
| AAGAGAGGTTTGAGATTGTT+AGG | 0.241590 | 1_3:+10105175 | Msa0103080:CDS |
| AGCTCCACCATTAATCTCTT+TGG | 0.246383 | 1_3:-10105907 | None:intergenic |
| TTACGGTGTGACAATATTAT+AGG | 0.267862 | 1_3:-10106802 | None:intergenic |
| TCTGCTTCCCCTATTGATAT+TGG | 0.271841 | 1_3:-10109226 | None:intergenic |
| GGCATGGCTGTTGCATCTTT+TGG | 0.272373 | 1_3:+10113059 | Msa0103080:three_prime_UTR |
| CTGTAGTTGTAGCGAGATAA+TGG | 0.288221 | 1_3:+10110548 | Msa0103080:intron |
| CGGGTTGTCGAGTCAAAATA+TGG | 0.291048 | 1_3:+10105742 | Msa0103080:CDS |
| TGCTAAACTTAATAATGAAC+TGG | 0.297963 | 1_3:+10110259 | Msa0103080:CDS |
| GGGTTTGCTTGAACTATCTT+TGG | 0.302655 | 1_3:-10107298 | None:intergenic |
| CCTGATCCTGTTTGCTATGA+TGG | 0.302744 | 1_3:+10109485 | Msa0103080:CDS |
| ATTGAAGTTTGGAAAGCTAT+TGG | 0.303036 | 1_3:+10110323 | Msa0103080:CDS |
| TTTCAAAAGCTTTGAAGAAA+TGG | 0.311539 | 1_3:+10112164 | Msa0103080:CDS |
| GAAAGCTATTGGGATGGATA+TGG | 0.312624 | 1_3:+10110334 | Msa0103080:CDS |
| TCCATGAAAATGCATGATAA+TGG | 0.313841 | 1_3:-10111519 | None:intergenic |
| CTCAGAATAACAGCCTTAAA+AGG | 0.322339 | 1_3:+10105961 | Msa0103080:CDS |
| GGGTTTCCCTCGGCAATCTT+TGG | 0.322538 | 1_3:-10111894 | None:intergenic |
| TTGTAGGTGTAGCCAAATAA+TGG | 0.323398 | 1_3:+10106083 | Msa0103080:intron |
| AGCTAGTATCTGCTGGTTGC+CGG | 0.324103 | 1_3:+10110210 | Msa0103080:CDS |
| ATGAGTTGGATCGAAATATA+TGG | 0.324127 | 1_3:+10112967 | Msa0103080:three_prime_UTR |
| TGGTCATCCAAAGAGATTAA+TGG | 0.330747 | 1_3:+10105900 | Msa0103080:CDS |
| TTTGAGATTGTTAGGAGTAT+TGG | 0.334731 | 1_3:+10105183 | Msa0103080:CDS |
| CTGAGATGTTGCATTTGAAT+TGG | 0.340137 | 1_3:-10109290 | None:intergenic |
| TCCATGTAAATGGATGATAA+TGG | 0.358067 | 1_3:-10106948 | None:intergenic |
| AGCTCTTGAAACATTGTCTA+TGG | 0.360604 | 1_3:+10109258 | Msa0103080:CDS |
| AGTATTGTGATGTTATTAAG+AGG | 0.365525 | 1_3:+10106770 | Msa0103080:CDS |
| ATGTGCTGATTAAAGAAATT+AGG | 0.377646 | 1_3:+10112768 | Msa0103080:exon |
| GCCGCTACATGATTGAAGTT+TGG | 0.382650 | 1_3:+10110312 | Msa0103080:CDS |
| TTCGTTGATCTATTCCCATT+TGG | 0.389228 | 1_3:-10111285 | None:intergenic |
| CTTGAACTATGTAGTCTGTC+AGG | 0.394743 | 1_3:+10108714 | Msa0103080:intron |
| TCCAAATTTCAATGAAGTAC+TGG | 0.399482 | 1_3:-10105833 | None:intergenic |
| GCTTGTTGGCAAGGATGTTA+AGG | 0.399766 | 1_3:-10109463 | None:intergenic |
| ATGGAGTGTGGGGCAGATAA+TGG | 0.408690 | 1_3:+10107373 | Msa0103080:CDS |
| CCATGAAAATGCATGATAAT+GGG | 0.408792 | 1_3:-10111518 | None:intergenic |
| TCTTTAATCAGCACATTACT+TGG | 0.409793 | 1_3:-10112761 | None:intergenic |
| TCAAAATATGGGTTGCTGAT+TGG | 0.414231 | 1_3:+10105754 | Msa0103080:CDS |
| ATTATTGTGATATTATTAAG+AGG | 0.419869 | 1_3:+10111329 | Msa0103080:CDS |
| ATACCGTGTGACAAAATAAC+TGG | 0.421589 | 1_3:-10111361 | None:intergenic |
| TTAGTCTTCAAAGGATTCTC+AGG | 0.423081 | 1_3:+10110450 | Msa0103080:CDS |
| TCTTGCCCTTGTTGCAGACC+AGG | 0.424708 | 1_3:-10106906 | None:intergenic |
| TAGGTCGACATTTGCCAAAT+GGG | 0.426876 | 1_3:+10111271 | Msa0103080:intron |
| TCAAAATAGTGATTGCTGAT+TGG | 0.427637 | 1_3:+10110234 | Msa0103080:CDS |
| TTGAAGTTTGGAAAGCTATT+GGG | 0.429580 | 1_3:+10110324 | Msa0103080:CDS |
| TTGAGACTGTGAAGAGTGTT+GGG | 0.429601 | 1_3:+10109414 | Msa0103080:CDS |
| ACAGCCTTAAAAGGATTGTC+AGG | 0.430574 | 1_3:+10105970 | Msa0103080:CDS |
| CCTGGAACATGCAGCCTGTA+AGG | 0.432159 | 1_3:+10112568 | Msa0103080:intron |
| CCCATTATCATCCATTTACA+TGG | 0.433291 | 1_3:+10106947 | Msa0103080:CDS |
| TCCAGGGAACCAATATCAAT+AGG | 0.436253 | 1_3:+10109217 | Msa0103080:intron |
| CCATGCCTTATCTCAGTAAG+AGG | 0.438058 | 1_3:-10113043 | None:intergenic |
| CCATGCCTTATCTCAGTAAG+AGG | 0.438058 | 1_3:-10113113 | None:intergenic |
| GTTCAAAAGCTTTGAAGAGT+TGG | 0.438761 | 1_3:+10107581 | Msa0103080:CDS |
| TGTAGGTGTAGCCAAATAAT+GGG | 0.439733 | 1_3:+10106084 | Msa0103080:intron |
| TCTTGCCCTTGCTGTGGACC+AGG | 0.440766 | 1_3:-10111477 | None:intergenic |
| CCAGGGAACCAATATCAATA+GGG | 0.441610 | 1_3:+10109218 | Msa0103080:intron |
| CCGGCCATTGCTGACGGTGG+AGG | 0.442283 | 1_3:-10104990 | None:intergenic |
| TTTCCCTCGGCAATCTTTGG+TGG | 0.442859 | 1_3:-10111891 | None:intergenic |
| ACATCCAGAGGACCTCAAAC+TGG | 0.444445 | 1_3:+10107629 | Msa0103080:CDS |
| ATAGGCCGACATCTGCCAAT+TGG | 0.446232 | 1_3:+10106711 | Msa0103080:intron |
| CCATCATAGCAAACAGGATC+AGG | 0.447987 | 1_3:-10109485 | None:intergenic |
| TTGAAGAGGTTCTGCGTCTC+CGG | 0.449035 | 1_3:-10105009 | None:intergenic |
| ATGGTTGCTGACTATGAAAT+CGG | 0.450458 | 1_3:+10112183 | Msa0103080:CDS |
| ATAGGTCGACATTTGCCAAA+TGG | 0.451851 | 1_3:+10111270 | Msa0103080:intron |
| GCAAACAGGATCAGGCTTGT+TGG | 0.458081 | 1_3:-10109477 | None:intergenic |
| ACCACGGAAAGATAAGATAT+CGG | 0.461319 | 1_3:-10107336 | None:intergenic |
| GCTAAGTTGAACAATAAAAT+GGG | 0.464780 | 1_3:+10105780 | Msa0103080:CDS |
| TAGGCCGACATCTGCCAATT+GGG | 0.465959 | 1_3:+10106712 | Msa0103080:intron |
| TGGACGAATGCACATTGCTC+AGG | 0.467817 | 1_3:+10105290 | Msa0103080:CDS |
| CTCAGAAGTTTAGTCTTCAA+AGG | 0.469252 | 1_3:+10110441 | Msa0103080:CDS |
| AATAATGGGACGAAGTGAAC+AGG | 0.469367 | 1_3:+10106098 | Msa0103080:CDS |
| CGAGTATTGGCCGCTTGTGT+TGG | 0.469729 | 1_3:+10110412 | Msa0103080:CDS |
| AAAGCCAGTTTGAGGTCCTC+TGG | 0.473971 | 1_3:-10107633 | None:intergenic |
| TTCGCTGATCCATTCCCAAT+TGG | 0.475955 | 1_3:-10106726 | None:intergenic |
| GTGGTTTAAGGAGTTCACTA+TGG | 0.479089 | 1_3:+10107354 | Msa0103080:CDS |
| CAATATCTTTCTTGTTAGCA+AGG | 0.480246 | 1_3:-10105242 | None:intergenic |
| ATCTTCTCTTGCCCTTGCTG+TGG | 0.480771 | 1_3:-10111483 | None:intergenic |
| AATAACATGGGATGCTCCTA+AGG | 0.481752 | 1_3:+10104885 | None:intergenic |
| TTTGCTTGAACTATCTTTGG+TGG | 0.482747 | 1_3:-10107295 | None:intergenic |
| ATTGAAATTTGGAAAGCCAC+TGG | 0.482969 | 1_3:+10105843 | Msa0103080:CDS |
| GCTAGTATCTGCTGGTTGCC+GGG | 0.483367 | 1_3:+10110211 | Msa0103080:CDS |
| TTCTTAATGTAGTCCAAGCA+TGG | 0.483445 | 1_3:-10111915 | None:intergenic |
| CCATGTAAATGGATGATAAT+GGG | 0.484458 | 1_3:-10106947 | None:intergenic |
| TCAAAACCATCATAGCAAAC+AGG | 0.484608 | 1_3:-10109491 | None:intergenic |
| TGCCGAGGGAAACCCATGCT+TGG | 0.485575 | 1_3:+10111902 | Msa0103080:CDS |
| TGTAGTTGTAGCGAGATAAT+GGG | 0.485778 | 1_3:+10110549 | Msa0103080:intron |
| TTTAATGACTTCGACAAAGC+TGG | 0.488272 | 1_3:-10112231 | None:intergenic |
| TTGCTTGAACTATCTTTGGT+GGG | 0.493037 | 1_3:-10107294 | None:intergenic |
| CGGCCAATACTCGTCAGCTC+TGG | 0.493969 | 1_3:-10110402 | None:intergenic |
| TTCCCTCGGCAATCTTTGGT+GGG | 0.495747 | 1_3:-10111890 | None:intergenic |
| ATGTCAGCACATTGCATGCA+TGG | 0.498935 | 1_3:-10110618 | None:intergenic |
| GTGGAGCGTAGTGCTGATAA+TGG | 0.501868 | 1_3:+10111969 | Msa0103080:CDS |
| TTAAACAAAATTGAGACGGT+TGG | 0.502241 | 1_3:+10105810 | Msa0103080:CDS |
| AGGCCAGAGCTGACGAGTAT+TGG | 0.502710 | 1_3:+10110399 | Msa0103080:CDS |
| ACTTTGACAAAGCCAGTTTG+AGG | 0.504966 | 1_3:-10107641 | None:intergenic |
| CAGGATCAGGCTTGTTGGCA+AGG | 0.505429 | 1_3:-10109472 | None:intergenic |
| ATCAGAGAAATGAACGAAAG+AGG | 0.506332 | 1_3:-10104943 | None:intergenic |
| AATAGGCAAAATTATTTAGA+CGG | 0.507943 | 1_3:-10112940 | None:intergenic |
| ACGGTGGAGGAAGGCGAGAA+AGG | 0.509805 | 1_3:-10104977 | None:intergenic |
| AAAGCTGGTTTAAGATCAGC+TGG | 0.516888 | 1_3:-10112216 | None:intergenic |
| CCTTCCTCCACCGTCAGCAA+TGG | 0.518655 | 1_3:+10104986 | Msa0103080:exon |
| CCTCCACCGTCAGCAATGGC+CGG | 0.519452 | 1_3:+10104990 | Msa0103080:exon |
| GAGTGTGGGGCAGATAATGG+TGG | 0.522761 | 1_3:+10107376 | Msa0103080:CDS |
| TGATACCTCTTACTGAGATA+AGG | 0.522942 | 1_3:+10113038 | Msa0103080:three_prime_UTR |
| TGATACCTCTTACTGAGATA+AGG | 0.522942 | 1_3:+10113108 | Msa0103080:three_prime_UTR |
| TTGAAGAAAATTGAGACGAC+TGG | 0.523930 | 1_3:+10110290 | Msa0103080:CDS |
| TTTGAGACTGTGAAGAGTGT+TGG | 0.524572 | 1_3:+10109413 | Msa0103080:CDS |
| TCCGATATCTTATCTTTCCG+TGG | 0.526364 | 1_3:+10107335 | Msa0103080:CDS |
| AATAACATCACAATACTCTC+TGG | 0.528355 | 1_3:-10106764 | None:intergenic |
| AGTGAATATGAAAATAGAAA+AGG | 0.529323 | 1_3:+10107264 | Msa0103080:CDS |
| ATGTCAGCACACTGCATGCA+TGG | 0.529807 | 1_3:-10106150 | None:intergenic |
| TTGAAATTTGGAAAGCCACT+GGG | 0.532704 | 1_3:+10105844 | Msa0103080:CDS |
| GCGTCTCCGGCCATTGCTGA+CGG | 0.533447 | 1_3:-10104996 | None:intergenic |
| CGACATCTGCCAATTGGGAA+TGG | 0.537270 | 1_3:+10106717 | Msa0103080:CDS |
| AGGAGTTCACTATGGAGTGT+GGG | 0.540032 | 1_3:+10107362 | Msa0103080:CDS |
| ATGGTGGAGCTGATAAGTAC+TGG | 0.542353 | 1_3:+10105919 | Msa0103080:CDS |
| TCTTAATGTAGTCCAAGCAT+GGG | 0.542374 | 1_3:-10111914 | None:intergenic |
| GTGAACAAGTTAACATCTGC+GGG | 0.543389 | 1_3:+10105723 | Msa0103080:CDS |
| AGTAAGAGGTATCAGATACA+TGG | 0.544713 | 1_3:-10113099 | None:intergenic |
| TTTGAATCTGATGATTGAAG+AGG | 0.544976 | 1_3:-10105023 | None:intergenic |
| CCATTGCTGACGGTGGAGGA+AGG | 0.550343 | 1_3:-10104986 | None:intergenic |
| GGGGCGAATGAACATTGCTC+AGG | 0.550348 | 1_3:+10109520 | Msa0103080:CDS |
| TGTTACCTGGTCTGCAACAA+GGG | 0.551325 | 1_3:+10106901 | Msa0103080:CDS |
| AAAGATATTGTTTGTTACGA+CGG | 0.551552 | 1_3:+10105255 | Msa0103080:CDS |
| TTGAACTATGTAGTCTGTCA+GGG | 0.551640 | 1_3:+10108715 | Msa0103080:intron |
| TATCGGATGTACTCTAAGCA+TGG | 0.554262 | 1_3:-10107319 | None:intergenic |
| GTCCAAGCATGGGTTTCCCT+CGG | 0.556731 | 1_3:-10111904 | None:intergenic |
| ATGTTACCTGGTCTGCAACA+AGG | 0.559308 | 1_3:+10106900 | Msa0103080:CDS |
| AGTAAGAGGTATCATATACA+TGG | 0.564752 | 1_3:-10113029 | None:intergenic |
| AAGGAGTTCACTATGGAGTG+TGG | 0.567662 | 1_3:+10107361 | Msa0103080:CDS |
| GCTAAACTTAATAATGAACT+GGG | 0.573462 | 1_3:+10110260 | Msa0103080:CDS |
| ATGTTACCTGGTCCACAGCA+AGG | 0.575328 | 1_3:+10111471 | Msa0103080:CDS |
| AATTTGGAAAGCCACTGGGA+TGG | 0.575399 | 1_3:+10105848 | Msa0103080:CDS |
| TGCAGGCTTACAGAGTCACC+AGG | 0.578783 | 1_3:+10108890 | Msa0103080:intron |
| AGTTTGGAAAGCTATTGGGA+TGG | 0.580238 | 1_3:+10110328 | Msa0103080:CDS |
| TCTGTTGCAGGTCGTTGCAG+AGG | 0.582102 | 1_3:+10109390 | Msa0103080:intron |
| ATCGGATGTACTCTAAGCAT+GGG | 0.582460 | 1_3:-10107318 | None:intergenic |
| ATCCATTTACATGGAAGATG+AGG | 0.585222 | 1_3:+10106956 | Msa0103080:CDS |
| CATTCCCAATTGGCAGATGT+CGG | 0.585557 | 1_3:-10106716 | None:intergenic |
| GTGAACAAGCTAGTATCTGC+TGG | 0.590906 | 1_3:+10110203 | Msa0103080:CDS |
| GTCATTAAATAAAATTCTAG+AGG | 0.596153 | 1_3:+10112245 | Msa0103080:CDS |
| TGTGAACAAGTTAACATCTG+CGG | 0.596544 | 1_3:+10105722 | Msa0103080:CDS |
| GGTCATTGAGTGTTGAAGAG+AGG | 0.598767 | 1_3:+10105160 | Msa0103080:intron |
| ATTGGGATGGATATGGAAGG+AGG | 0.598963 | 1_3:+10110341 | Msa0103080:CDS |
| GTCATTGAATAAAATTCTAG+AGG | 0.600216 | 1_3:+10107662 | Msa0103080:CDS |
| AGAGCTACTAAAAGAAGTCA+AGG | 0.601021 | 1_3:+10108766 | Msa0103080:CDS |
| GCTATTGGGATGGATATGGA+AGG | 0.603158 | 1_3:+10110338 | Msa0103080:CDS |
| GCAATGTTCATTCGCCCCGA+AGG | 0.603234 | 1_3:-10109515 | None:intergenic |
| TAAACTTAATAATGAACTGG+GGG | 0.604613 | 1_3:+10110262 | Msa0103080:CDS |
| CATTTACATGGAAGATGAGG+AGG | 0.605288 | 1_3:+10106959 | Msa0103080:CDS |
| AGATTTAAACAAAATTGAGA+CGG | 0.605847 | 1_3:+10105806 | Msa0103080:CDS |
| TCTCCGGCCATTGCTGACGG+TGG | 0.606016 | 1_3:-10104993 | None:intergenic |
| TGCCCACCAAAGATTGCCGA+GGG | 0.606717 | 1_3:+10111888 | Msa0103080:CDS |
| CTAAACTTAATAATGAACTG+GGG | 0.609136 | 1_3:+10110261 | Msa0103080:CDS |
| TTGCCCACCAAAGATTGCCG+AGG | 0.610802 | 1_3:+10111887 | Msa0103080:CDS |
| CCTCTTACTGAGATAAGGCA+TGG | 0.611081 | 1_3:+10113043 | Msa0103080:three_prime_UTR |
| CCTCTTACTGAGATAAGGCA+TGG | 0.611081 | 1_3:+10113113 | Msa0103080:three_prime_UTR |
| GGGTTGTCGAGTCAAAATAT+GGG | 0.612585 | 1_3:+10105743 | Msa0103080:CDS |
| ACTGGGATGGATTTCGAAGG+AGG | 0.614038 | 1_3:+10105861 | Msa0103080:CDS |
| TCCAAACTTCAATCATGTAG+CGG | 0.617129 | 1_3:-10110313 | None:intergenic |
| GCAACACTTCAGAACGAACA+AGG | 0.620636 | 1_3:+10112590 | Msa0103080:CDS |
| GTGGAGGAAGGCGAGAAAGG+AGG | 0.622076 | 1_3:-10104974 | None:intergenic |
| TGGATAGAATATTTGAGAAG+CGG | 0.622836 | 1_3:-10106130 | None:intergenic |
| GCAATGTGCATTCGTCCAGA+AGG | 0.623405 | 1_3:-10105285 | None:intergenic |
| ATAGTGAACTCCTTAAACCA+CGG | 0.625427 | 1_3:-10107352 | None:intergenic |
| CAGGGAACCAATATCAATAG+GGG | 0.626702 | 1_3:+10109219 | Msa0103080:intron |
| GGAGTTCACTATGGAGTGTG+GGG | 0.631293 | 1_3:+10107363 | Msa0103080:CDS |
| TGTTACCTGGTCCACAGCAA+GGG | 0.631409 | 1_3:+10111472 | Msa0103080:CDS |
| TTGGTTGTTGACTATGAAAG+CGG | 0.631709 | 1_3:+10107600 | Msa0103080:CDS |
| TGGGGAAGAGTGCACTCAAG+AGG | 0.632415 | 1_3:+10109433 | Msa0103080:CDS |
| TTAAGAAACTTGTCTTACCG+TGG | 0.634608 | 1_3:+10111931 | Msa0103080:CDS |
| GCCACTGGGATGGATTTCGA+AGG | 0.644523 | 1_3:+10105858 | Msa0103080:CDS |
| GTGGTCCTCAAAAGAGATCG+AGG | 0.644999 | 1_3:+10110379 | Msa0103080:CDS |
| CTGGGATGGATTTCGAAGGA+GGG | 0.646443 | 1_3:+10105862 | Msa0103080:CDS |
| TATCTTTCTTGTTAGCAAGG+AGG | 0.651742 | 1_3:-10105239 | None:intergenic |
| TGAGACTGTGAAGAGTGTTG+GGG | 0.653345 | 1_3:+10109415 | Msa0103080:CDS |
| GTGGTTTAACGAGTTTACTG+TGG | 0.654072 | 1_3:+10111950 | Msa0103080:CDS |
| TGTCAGGGAACACTTTCGAA+AGG | 0.662394 | 1_3:+10108730 | Msa0103080:CDS |
| TCATCCAAAGAGATTAATGG+TGG | 0.666178 | 1_3:+10105903 | Msa0103080:CDS |
| TGAGCTATATCCAACACAAG+CGG | 0.666640 | 1_3:-10110422 | None:intergenic |
| AGTGAACATGAAGAATCCGC+TGG | 0.672166 | 1_3:+10110576 | Msa0103080:CDS |
| AAGCGGAGAGGTACATCCAG+AGG | 0.682554 | 1_3:+10107617 | Msa0103080:CDS |
| AAGTTGAACAATAAAATGGG+AGG | 0.683219 | 1_3:+10105783 | Msa0103080:CDS |
| AGTGTGGGGCAGATAATGGT+GGG | 0.686173 | 1_3:+10107377 | Msa0103080:CDS |
| GAGCGTAGTGCTGATAATGG+TGG | 0.690334 | 1_3:+10111972 | Msa0103080:CDS |
| TCCTTCGAAATCCATCCCAG+TGG | 0.692168 | 1_3:-10105859 | None:intergenic |
| GAATATTTGAGAAGTACCAG+CGG | 0.710946 | 1_3:-10110592 | None:intergenic |
| ACAGTAAACTCGTTAAACCA+CGG | 0.711812 | 1_3:-10111948 | None:intergenic |
| AAACTTAATAATGAACTGGG+GGG | 0.733865 | 1_3:+10110263 | Msa0103080:CDS |
| TGTTGACTATGAAAGCGGAG+AGG | 0.762601 | 1_3:+10107605 | Msa0103080:CDS |
| TGAGCTATATCTAACACACG+AGG | 0.787457 | 1_3:-10105942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTTTCAAATTATTAT+CGG | - | chr1_3:10105416-10105435 | None:intergenic | 10.0% |
| !!! | TTGAAATATTTTTTCTTTTT+TGG | + | chr1_3:10106050-10106069 | Msa0103080:intron | 10.0% |
| !! | AAACAATTATATCTTATAAT+AGG | + | chr1_3:10106693-10106712 | Msa0103080:intron | 10.0% |
| !! | AACTACTATTATTATTATAA+TGG | - | chr1_3:10107446-10107465 | None:intergenic | 10.0% |
| !! | TTATAAAGTATAATCATATT+GGG | + | chr1_3:10107854-10107873 | Msa0103080:intron | 10.0% |
| !! | AGATATATTAATATGTATAA+TGG | + | chr1_3:10109560-10109579 | Msa0103080:intron | 10.0% |
| !! | ACTTAAAAATAATTAAATCA+TGG | - | chr1_3:10109686-10109705 | None:intergenic | 10.0% |
| !!! | TAATTATTTTTAAGTTGATT+TGG | + | chr1_3:10109691-10109710 | Msa0103080:intron | 10.0% |
| !! | AGAAAAAAATTTAAATTTCT+CGG | - | chr1_3:10109855-10109874 | None:intergenic | 10.0% |
| !! | AGAAAAAAATTTAAATTTCT+CGG | - | chr1_3:10109855-10109874 | None:intergenic | 10.0% |
| !! | AAAAATTAAAAAATATAAGC+AGG | + | chr1_3:10111670-10111689 | Msa0103080:intron | 10.0% |
| !!! | ATAATTCTAAAGTTACATAA+TGG | + | chr1_3:10106272-10106291 | Msa0103080:intron | 15.0% |
| !!! | TAAATTTGTTATCATTACAA+AGG | + | chr1_3:10107002-10107021 | Msa0103080:intron | 15.0% |
| !! | CTTATAAAGTATAATCATAT+TGG | + | chr1_3:10107853-10107872 | Msa0103080:intron | 15.0% |
| !! | AAATTTAAATGTTGTGTTAT+TGG | + | chr1_3:10107904-10107923 | Msa0103080:intron | 15.0% |
| !! | AAATTATTCATTCTTTACAT+AGG | + | chr1_3:10108185-10108204 | Msa0103080:intron | 15.0% |
| !! | ATTAAAATTAAATGGCATTA+TGG | - | chr1_3:10108949-10108968 | None:intergenic | 15.0% |
| !! | ATATTAAACAAGTCAAAAAA+TGG | - | chr1_3:10108983-10109002 | None:intergenic | 15.0% |
| !!! | ATTTTTTGACTTGTTTAATA+TGG | + | chr1_3:10108982-10109001 | Msa0103080:intron | 15.0% |
| !!! | AAAACATTTATGTAGTTTTT+TGG | + | chr1_3:10109106-10109125 | Msa0103080:intron | 15.0% |
| !!! | ATTAATATTTTTGTTGAAGA+GGG | - | chr1_3:10109778-10109797 | None:intergenic | 15.0% |
| !!! | TATTAATATTTTTGTTGAAG+AGG | - | chr1_3:10109779-10109798 | None:intergenic | 15.0% |
| !! | AGAACTCTTAAATAAATAAA+TGG | + | chr1_3:10110797-10110816 | Msa0103080:intron | 15.0% |
| !!! | ATGTATTAGGTTTTTATATT+GGG | + | chr1_3:10110827-10110846 | Msa0103080:intron | 15.0% |
| !!! | GAATCTTTTTATCTTAAAAT+AGG | + | chr1_3:10111252-10111271 | Msa0103080:intron | 15.0% |
| !! | ATTATTGTGATATTATTAAG+AGG | + | chr1_3:10111329-10111348 | Msa0103080:CDS | 15.0% |
| !! | ACAAAAAATATATAGTATGT+TGG | + | chr1_3:10111700-10111719 | Msa0103080:intron | 15.0% |
| !!! | ATTAACTTTTTGAATCATTA+TGG | + | chr1_3:10112050-10112069 | Msa0103080:intron | 15.0% |
| !! | ATATTAAAAACCAATTTAGA+TGG | + | chr1_3:10112314-10112333 | Msa0103080:intron | 15.0% |
| !!! | TTTTTTCATTTCTTTATTTC+TGG | + | chr1_3:10112518-10112537 | Msa0103080:intron | 15.0% |
| !!! | ATTTTTGGACTTTTAAAATA+TGG | + | chr1_3:10112840-10112859 | Msa0103080:three_prime_UTR | 15.0% |
| !! | ATTAAGTAGAAAGAAACTTA+CGG | - | chr1_3:10105065-10105084 | None:intergenic | 20.0% |
| !!! | GTGTTTAATAAATGTGATTT+TGG | + | chr1_3:10105481-10105500 | Msa0103080:intron | 20.0% |
| !!! | TGATTTTGTAAGAATATGTT+TGG | + | chr1_3:10105543-10105562 | Msa0103080:intron | 20.0% |
| !!! | GCTTATTTTCAAATGATTTA+AGG | + | chr1_3:10105645-10105664 | Msa0103080:intron | 20.0% |
| !! | AGATTTAAACAAAATTGAGA+CGG | + | chr1_3:10105806-10105825 | Msa0103080:CDS | 20.0% |
| !! | TTTCTTATGGAATTTGAAAA+TGG | + | chr1_3:10106445-10106464 | Msa0103080:intron | 20.0% |
| !! | CAATACATGAAAATATGAAA+TGG | - | chr1_3:10106566-10106585 | None:intergenic | 20.0% |
| !! | ATTTAGCAGAATATTAGTAT+GGG | + | chr1_3:10107116-10107135 | Msa0103080:intron | 20.0% |
| !!! | TGTGATTTTATGTAAACATT+TGG | + | chr1_3:10107149-10107168 | Msa0103080:intron | 20.0% |
| !! | TACAAAAATATCAACCAAAA+AGG | - | chr1_3:10107184-10107203 | None:intergenic | 20.0% |
| !! | AGTGAATATGAAAATAGAAA+AGG | + | chr1_3:10107264-10107283 | Msa0103080:CDS | 20.0% |
| !! | TGGAAGATAAAAGTTTAAAT+GGG | - | chr1_3:10107426-10107445 | None:intergenic | 20.0% |
| !! | ATGGAAGATAAAAGTTTAAA+TGG | - | chr1_3:10107427-10107446 | None:intergenic | 20.0% |
| !! | TTGTATCATTACATCTTTAT+TGG | + | chr1_3:10108400-10108419 | Msa0103080:intron | 20.0% |
| !! | TGCAAAACAAAAACAAATTT+AGG | - | chr1_3:10108874-10108893 | None:intergenic | 20.0% |
| !!! | TAAATTTGTTTTTGTTTTGC+AGG | + | chr1_3:10108873-10108892 | Msa0103080:intron | 20.0% |
| !! | CAATTTACAAAACAAAAACT+TGG | - | chr1_3:10109587-10109606 | None:intergenic | 20.0% |
| !! | TAATATCTACTCATAGAATA+AGG | + | chr1_3:10109618-10109637 | Msa0103080:intron | 20.0% |
| !!! | ACTCTTTTACTTGTATATAT+AGG | + | chr1_3:10109957-10109976 | Msa0103080:intron | 20.0% |
| !!! | CTCTTTTACTTGTATATATA+GGG | + | chr1_3:10109958-10109977 | Msa0103080:intron | 20.0% |
| !!! | ACTCTTTTACTTGTATATAT+AGG | + | chr1_3:10109957-10109976 | Msa0103080:intron | 20.0% |
| !!! | CTCTTTTACTTGTATATATA+GGG | + | chr1_3:10109958-10109977 | Msa0103080:intron | 20.0% |
| !! | TCATAAAACAATGTTCATAT+AGG | + | chr1_3:10110744-10110763 | Msa0103080:intron | 20.0% |
| !!! | AAATGGATTTATCATGTATT+AGG | + | chr1_3:10110814-10110833 | Msa0103080:intron | 20.0% |
| !!! | CATGTATTAGGTTTTTATAT+TGG | + | chr1_3:10110826-10110845 | Msa0103080:intron | 20.0% |
| !! | ATAGAAACAATAAGAAACTA+AGG | - | chr1_3:10111109-10111128 | None:intergenic | 20.0% |
| !!! | TCAATTTGCTTGAAATATAT+TGG | + | chr1_3:10111217-10111236 | Msa0103080:intron | 20.0% |
| !! | ATATAGTATGTTGGAATAAA+AGG | + | chr1_3:10111709-10111728 | Msa0103080:intron | 20.0% |
| !! | AGTGAATGTGAAAATAAAAA+AGG | + | chr1_3:10111860-10111879 | Msa0103080:CDS | 20.0% |
| !! | AGATACAAAATATTTAACAC+AGG | - | chr1_3:10112116-10112135 | None:intergenic | 20.0% |
| !! | GTCATTAAATAAAATTCTAG+AGG | + | chr1_3:10112245-10112264 | Msa0103080:CDS | 20.0% |
| !! | TGGTTAATTATTGTGAAATT+AGG | + | chr1_3:10112484-10112503 | Msa0103080:intron | 20.0% |
| !!! | ATTTCTTTATTTCTGGTATA+TGG | + | chr1_3:10112525-10112544 | Msa0103080:intron | 20.0% |
| !!! | TTGTATATATGTTTTCTCTT+TGG | + | chr1_3:10112691-10112710 | Msa0103080:intron | 20.0% |
| !! | AATAGGCAAAATTATTTAGA+CGG | - | chr1_3:10112943-10112962 | None:intergenic | 20.0% |
| !!! | TTTACTTTTACTCATTCCTT+AGG | - | chr1_3:10104904-10104923 | None:intergenic | 25.0% |
| !! | AAAGATATTGTTTGTTACGA+CGG | + | chr1_3:10105255-10105274 | Msa0103080:CDS | 25.0% |
| ! | TCTTCTACTTATGTGTTTAT+AGG | + | chr1_3:10105680-10105699 | Msa0103080:intron | 25.0% |
| ! | CTTCTACTTATGTGTTTATA+GGG | + | chr1_3:10105681-10105700 | Msa0103080:intron | 25.0% |
| !! | TGCTAAGTTGAACAATAAAA+TGG | + | chr1_3:10105779-10105798 | Msa0103080:CDS | 25.0% |
| !! | GCTAAGTTGAACAATAAAAT+GGG | + | chr1_3:10105780-10105799 | Msa0103080:CDS | 25.0% |
| ! | TTAAGAACTGGAAAAACAAA+TGG | + | chr1_3:10106333-10106352 | Msa0103080:intron | 25.0% |
| ! | AAAAATCTAAGAACAGTACA+GGG | - | chr1_3:10106416-10106435 | None:intergenic | 25.0% |
| !! | TTTTCTGTCTTAGTTTCTTA+TGG | + | chr1_3:10106432-10106451 | Msa0103080:intron | 25.0% |
| ! | ATTGTGTCCTTTATTGTTAA+TGG | + | chr1_3:10106521-10106540 | Msa0103080:intron | 25.0% |
| ! | AGTATTGTGATGTTATTAAG+AGG | + | chr1_3:10106770-10106789 | Msa0103080:CDS | 25.0% |
| ! | TATTTAGTTGCATTCTTCTT+TGG | + | chr1_3:10107041-10107060 | Msa0103080:intron | 25.0% |
| ! | GATTTAGCAGAATATTAGTA+TGG | + | chr1_3:10107115-10107134 | Msa0103080:intron | 25.0% |
| ! | TTTAGCAGAATATTAGTATG+GGG | + | chr1_3:10107117-10107136 | Msa0103080:intron | 25.0% |
| !! | TTTGGTTATTTGTTCCTTTT+TGG | + | chr1_3:10107167-10107186 | Msa0103080:intron | 25.0% |
| ! | ACTTTGTATTTGGATTTCAT+AGG | + | chr1_3:10107237-10107256 | Msa0103080:intron | 25.0% |
| ! | GAAGATAAAAGTTTAAATGG+GGG | - | chr1_3:10107424-10107443 | None:intergenic | 25.0% |
| ! | GGAAGATAAAAGTTTAAATG+GGG | - | chr1_3:10107425-10107444 | None:intergenic | 25.0% |
| !! | AACTATTATTGCTTTAAGTC+TGG | + | chr1_3:10107480-10107499 | Msa0103080:intron | 25.0% |
| ! | GTCATTGAATAAAATTCTAG+AGG | + | chr1_3:10107662-10107681 | Msa0103080:CDS | 25.0% |
| !! | TTTTTCTTGTAAGACTTAAG+AGG | - | chr1_3:10107734-10107753 | None:intergenic | 25.0% |
| ! | TAATCATAACAGTAGTTAGT+CGG | - | chr1_3:10108049-10108068 | None:intergenic | 25.0% |
| ! | TGTTAAGTGAAAGACTAAAA+CGG | + | chr1_3:10108072-10108091 | Msa0103080:intron | 25.0% |
| ! | GTTCTATCATATACTTAAGT+TGG | + | chr1_3:10108300-10108319 | Msa0103080:intron | 25.0% |
| ! | TATTAACGAGTATCAACTAT+TGG | + | chr1_3:10109040-10109059 | Msa0103080:intron | 25.0% |
| !!! | TTATTTTAAACTGAAACCTC+AGG | - | chr1_3:10109349-10109368 | None:intergenic | 25.0% |
| !! | CAGTTTAAAATAAATTTCCG+TGG | + | chr1_3:10109356-10109375 | Msa0103080:intron | 25.0% |
| ! | TGCTAAACTTAATAATGAAC+TGG | + | chr1_3:10110259-10110278 | Msa0103080:CDS | 25.0% |
| ! | GCTAAACTTAATAATGAACT+GGG | + | chr1_3:10110260-10110279 | Msa0103080:CDS | 25.0% |
| ! | CTAAACTTAATAATGAACTG+GGG | + | chr1_3:10110261-10110280 | Msa0103080:CDS | 25.0% |
| ! | TAAACTTAATAATGAACTGG+GGG | + | chr1_3:10110262-10110281 | Msa0103080:CDS | 25.0% |
| !!! | AATGCAAAGCATTGATATAT+AGG | - | chr1_3:10110674-10110693 | None:intergenic | 25.0% |
| ! | ATCTAAAAGCCAGATTTATA+AGG | - | chr1_3:10110863-10110882 | None:intergenic | 25.0% |
| ! | TACAATGGTTGCATTAAAAA+TGG | + | chr1_3:10110961-10110980 | Msa0103080:intron | 25.0% |
| !!! | AACTACAATTGTTTTGTTTC+TGG | + | chr1_3:10111074-10111093 | Msa0103080:intron | 25.0% |
| !!! | TCTAGTTGTGTTGTTTATTA+TGG | + | chr1_3:10111173-10111192 | Msa0103080:intron | 25.0% |
| !! | GACTTTTCAAACTTTGTATT+TGG | + | chr1_3:10111823-10111842 | Msa0103080:intron | 25.0% |
| ! | AAAGCTAGAAAACAGATTTA+AGG | - | chr1_3:10112079-10112098 | None:intergenic | 25.0% |
| !!! | TTTCAAAAGCTTTGAAGAAA+TGG | + | chr1_3:10112164-10112183 | Msa0103080:CDS | 25.0% |
| ! | ATTGTGTTAACCATCTAAAT+TGG | - | chr1_3:10112327-10112346 | None:intergenic | 25.0% |
| !! | TTGTGTTTGAAATTTCTATG+TGG | + | chr1_3:10112461-10112480 | Msa0103080:intron | 25.0% |
| ! | TACTAAAAAAAGTCAAGGTT+GGG | + | chr1_3:10112625-10112644 | Msa0103080:intron | 25.0% |
| !!! | ATGTGCTGATTAAAGAAATT+AGG | + | chr1_3:10112768-10112787 | Msa0103080:exon | 25.0% |
| !! | TAAACAGGCATACAATTTTT+CGG | + | chr1_3:10112804-10112823 | Msa0103080:three_prime_UTR | 25.0% |
| !!! | TTTGGACTTTTAAAATATGG+TGG | + | chr1_3:10112843-10112862 | Msa0103080:three_prime_UTR | 25.0% |
| TTTGAATCTGATGATTGAAG+AGG | - | chr1_3:10105026-10105045 | None:intergenic | 30.0% | |
| ATCAAAAACGAAACTGAAAC+TGG | - | chr1_3:10105117-10105136 | None:intergenic | 30.0% | |
| ! | TTTGAGATTGTTAGGAGTAT+TGG | + | chr1_3:10105183-10105202 | Msa0103080:CDS | 30.0% |
| CAATATCTTTCTTGTTAGCA+AGG | - | chr1_3:10105245-10105264 | None:intergenic | 30.0% | |
| AAGTTGAACAATAAAATGGG+AGG | + | chr1_3:10105783-10105802 | Msa0103080:CDS | 30.0% | |
| TTAAACAAAATTGAGACGGT+TGG | + | chr1_3:10105810-10105829 | Msa0103080:CDS | 30.0% | |
| TCCAAATTTCAATGAAGTAC+TGG | - | chr1_3:10105836-10105855 | None:intergenic | 30.0% | |
| TGGATAGAATATTTGAGAAG+CGG | - | chr1_3:10106133-10106152 | None:intergenic | 30.0% | |
| !! | GTTTACCATTTTCTGATTTG+AGG | + | chr1_3:10106191-10106210 | Msa0103080:intron | 30.0% |
| TAAGCTAAAGTAGTCAATGT+AGG | - | chr1_3:10106217-10106236 | None:intergenic | 30.0% | |
| ! | TGTTTGTTACTGTTAAGAAC+TGG | + | chr1_3:10106321-10106340 | Msa0103080:intron | 30.0% |
| AAAAACAAATGGATGCACAA+TGG | + | chr1_3:10106344-10106363 | Msa0103080:intron | 30.0% | |
| GAAAAATCTAAGAACAGTAC+AGG | - | chr1_3:10106417-10106436 | None:intergenic | 30.0% | |
| CAATAAAGGACACAATATCT+TGG | - | chr1_3:10106517-10106536 | None:intergenic | 30.0% | |
| TTCCTCTCCATTAACAATAA+AGG | - | chr1_3:10106531-10106550 | None:intergenic | 30.0% | |
| CCAATATCTTTCAAGCATAT+TGG | - | chr1_3:10106661-10106680 | None:intergenic | 30.0% | |
| CCAATATGCTTGAAAGATAT+TGG | + | chr1_3:10106658-10106677 | Msa0103080:intron | 30.0% | |
| AATAACATCACAATACTCTC+TGG | - | chr1_3:10106767-10106786 | None:intergenic | 30.0% | |
| TTACGGTGTGACAATATTAT+AGG | - | chr1_3:10106805-10106824 | None:intergenic | 30.0% | |
| ACAAATATACATTAGCCGAA+AGG | - | chr1_3:10106843-10106862 | None:intergenic | 30.0% | |
| CCATGTAAATGGATGATAAT+GGG | - | chr1_3:10106950-10106969 | None:intergenic | 30.0% | |
| TCCATGTAAATGGATGATAA+TGG | - | chr1_3:10106951-10106970 | None:intergenic | 30.0% | |
| TTAGCAGAATATTAGTATGG+GGG | + | chr1_3:10107118-10107137 | Msa0103080:intron | 30.0% | |
| GACTGTTCAAACTTTGTATT+TGG | + | chr1_3:10107227-10107246 | Msa0103080:intron | 30.0% | |
| TTCATGCTTCCTTTCAATAT+AGG | + | chr1_3:10107556-10107575 | Msa0103080:intron | 30.0% | |
| TTTGAACGTCCTATATTGAA+AGG | - | chr1_3:10107568-10107587 | None:intergenic | 30.0% | |
| TAGTCTACTTGTAATATGTC+TGG | + | chr1_3:10107877-10107896 | Msa0103080:intron | 30.0% | |
| ATCAAGACCCTTAATTAGTT+GGG | + | chr1_3:10107941-10107960 | Msa0103080:intron | 30.0% | |
| TGTGTGCAGAATCAATAATA+GGG | - | chr1_3:10108212-10108231 | None:intergenic | 30.0% | |
| GAAAACCAAATTCTCAATTC+TGG | - | chr1_3:10108242-10108261 | None:intergenic | 30.0% | |
| TGTGGTAATATATACCCTAT+TGG | + | chr1_3:10108546-10108565 | Msa0103080:intron | 30.0% | |
| AAATGCAATCAACACCAATA+GGG | - | chr1_3:10108563-10108582 | None:intergenic | 30.0% | |
| AAAATGCAATCAACACCAAT+AGG | - | chr1_3:10108564-10108583 | None:intergenic | 30.0% | |
| !! | TGACTTGTTTAATATGGTAG+AGG | + | chr1_3:10108988-10109007 | Msa0103080:intron | 30.0% |
| AAAAGAAACAGCAATTGCAA+TGG | + | chr1_3:10109153-10109172 | Msa0103080:intron | 30.0% | |
| TAAGGAAAAATCAAGTCTAG+AGG | + | chr1_3:10109636-10109655 | Msa0103080:intron | 30.0% | |
| AAGGAAAAATCAAGTCTAGA+GGG | + | chr1_3:10109637-10109656 | Msa0103080:intron | 30.0% | |
| TCAAAATAGTGATTGCTGAT+TGG | + | chr1_3:10110028-10110047 | Msa0103080:intron | 30.0% | |
| AAACTTAATAATGAACTGGG+GGG | + | chr1_3:10110263-10110282 | Msa0103080:CDS | 30.0% | |
| ATTGAAGTTTGGAAAGCTAT+TGG | + | chr1_3:10110323-10110342 | Msa0103080:CDS | 30.0% | |
| TTGAAGTTTGGAAAGCTATT+GGG | + | chr1_3:10110324-10110343 | Msa0103080:CDS | 30.0% | |
| !! | TTGCAATGTTGTTTCATGTT+TGG | + | chr1_3:10110515-10110534 | Msa0103080:intron | 30.0% |
| !!! | ACATTTTTTTCTTCCAGGTA+CGG | + | chr1_3:10110637-10110656 | Msa0103080:intron | 30.0% |
| CAGATTTATAAGGATGAGTT+GGG | - | chr1_3:10110853-10110872 | None:intergenic | 30.0% | |
| !!! | ATAAATCTGGCTTTTAGATG+AGG | + | chr1_3:10110864-10110883 | Msa0103080:intron | 30.0% |
| !!! | TAAATCTGGCTTTTAGATGA+GGG | + | chr1_3:10110865-10110884 | Msa0103080:intron | 30.0% |
| TGACTAGAGTTTATAAAGAG+AGG | - | chr1_3:10110894-10110913 | None:intergenic | 30.0% | |
| TCTCTTTATAAACTCTAGTC+AGG | + | chr1_3:10110893-10110912 | Msa0103080:intron | 30.0% | |
| !!! | TGGGACTTTATTTTTCCAAT+AGG | + | chr1_3:10110934-10110953 | Msa0103080:intron | 30.0% |
| GTTGCATTAAAAATGGCATT+TGG | + | chr1_3:10110968-10110987 | Msa0103080:intron | 30.0% | |
| GAAACAATAAGAAACTAAGG+TGG | - | chr1_3:10111106-10111125 | None:intergenic | 30.0% | |
| GTTTCTATATGTAAACTAGC+TGG | + | chr1_3:10111121-10111140 | Msa0103080:intron | 30.0% | |
| !! | AAACCAGTTATTTTGTCACA+CGG | + | chr1_3:10111358-10111377 | Msa0103080:CDS | 30.0% |
| ! | ACACTATCTAAAATGAAACC+AGG | - | chr1_3:10111397-10111416 | None:intergenic | 30.0% |
| ! | TGCTTACTAGTAATTGATTC+TGG | + | chr1_3:10111434-10111453 | Msa0103080:intron | 30.0% |
| ! | GCTTACTAGTAATTGATTCT+GGG | + | chr1_3:10111435-10111454 | Msa0103080:intron | 30.0% |
| ! | CTTACTAGTAATTGATTCTG+GGG | + | chr1_3:10111436-10111455 | Msa0103080:intron | 30.0% |
| CCATGAAAATGCATGATAAT+GGG | - | chr1_3:10111521-10111540 | None:intergenic | 30.0% | |
| TCCATGAAAATGCATGATAA+TGG | - | chr1_3:10111522-10111541 | None:intergenic | 30.0% | |
| TGTGATCTTATGTAAGATTG+TGG | + | chr1_3:10111733-10111752 | Msa0103080:intron | 30.0% | |
| ACTTTGTATTTGGATATCAC+AGG | + | chr1_3:10111833-10111852 | Msa0103080:intron | 30.0% | |
| TTTGAAAGTCCTAGAATGAA+CGG | - | chr1_3:10112151-10112170 | None:intergenic | 30.0% | |
| !!! | GAGGTAATGTTTTAGAGAAA+TGG | + | chr1_3:10112264-10112283 | Msa0103080:intron | 30.0% |
| ! | TGTTTGAAATTTCTATGTGG+TGG | + | chr1_3:10112464-10112483 | Msa0103080:intron | 30.0% |
| AGAGCTACTAAAAAAAGTCA+AGG | + | chr1_3:10112620-10112639 | Msa0103080:CDS | 30.0% | |
| CTACTAAAAAAAGTCAAGGT+TGG | + | chr1_3:10112624-10112643 | Msa0103080:intron | 30.0% | |
| ACACTAACTGAATTTGTCTT+TGG | + | chr1_3:10112718-10112737 | Msa0103080:intron | 30.0% | |
| TCTTTAATCAGCACATTACT+TGG | - | chr1_3:10112764-10112783 | None:intergenic | 30.0% | |
| !!! | GGCAATTTTTTTTGCTAAAC+AGG | + | chr1_3:10112789-10112808 | Msa0103080:three_prime_UTR | 30.0% |
| !!! | GGTGTTACTAAATGCATTTT+TGG | + | chr1_3:10112825-10112844 | Msa0103080:three_prime_UTR | 30.0% |
| !! | TTTGCCTATTTTGAATGAGT+TGG | + | chr1_3:10112953-10112972 | Msa0103080:three_prime_UTR | 30.0% |
| ! | ATGAGTTGGATCGAAATATA+TGG | + | chr1_3:10112967-10112986 | Msa0103080:three_prime_UTR | 30.0% |
| !! | AGTAAGAGGTATCATATACA+TGG | - | chr1_3:10113032-10113051 | None:intergenic | 30.0% |
| ATCAGAGAAATGAACGAAAG+AGG | - | chr1_3:10104946-10104965 | None:intergenic | 35.0% | |
| GTAGAAAGAAACTTACGGAT+TGG | - | chr1_3:10105060-10105079 | None:intergenic | 35.0% | |
| ! | AAGAGAGGTTTGAGATTGTT+AGG | + | chr1_3:10105175-10105194 | Msa0103080:CDS | 35.0% |
| TATCTTTCTTGTTAGCAAGG+AGG | - | chr1_3:10105242-10105261 | None:intergenic | 35.0% | |
| TGTGAACAAGTTAACATCTG+CGG | + | chr1_3:10105722-10105741 | Msa0103080:CDS | 35.0% | |
| ! | TCAAAATATGGGTTGCTGAT+TGG | + | chr1_3:10105754-10105773 | Msa0103080:CDS | 35.0% |
| GCCAGTACTTCATTGAAATT+TGG | + | chr1_3:10105832-10105851 | Msa0103080:CDS | 35.0% | |
| ATTGAAATTTGGAAAGCCAC+TGG | + | chr1_3:10105843-10105862 | Msa0103080:CDS | 35.0% | |
| TTGAAATTTGGAAAGCCACT+GGG | + | chr1_3:10105844-10105863 | Msa0103080:CDS | 35.0% | |
| ! | GAGGGAAAGTTGAATTTTTG+TGG | + | chr1_3:10105880-10105899 | Msa0103080:CDS | 35.0% |
| TGGTCATCCAAAGAGATTAA+TGG | + | chr1_3:10105900-10105919 | Msa0103080:CDS | 35.0% | |
| TCATCCAAAGAGATTAATGG+TGG | + | chr1_3:10105903-10105922 | Msa0103080:CDS | 35.0% | |
| CTCAGAATAACAGCCTTAAA+AGG | + | chr1_3:10105961-10105980 | Msa0103080:CDS | 35.0% | |
| ! | GAAACCTGACAATCCTTTTA+AGG | - | chr1_3:10105977-10105996 | None:intergenic | 35.0% |
| GATACACTGAGTAATCGATT+TGG | + | chr1_3:10106025-10106044 | Msa0103080:intron | 35.0% | |
| !!! | TTTTGGTTCTTCCGAATTGT+AGG | + | chr1_3:10106067-10106086 | Msa0103080:intron | 35.0% |
| ATTTGGCTACACCTACAATT+CGG | - | chr1_3:10106081-10106100 | None:intergenic | 35.0% | |
| TTGTAGGTGTAGCCAAATAA+TGG | + | chr1_3:10106083-10106102 | Msa0103080:intron | 35.0% | |
| TGTAGGTGTAGCCAAATAAT+GGG | + | chr1_3:10106084-10106103 | Msa0103080:intron | 35.0% | |
| CACAATGGTAGCAGTAAAAA+TGG | + | chr1_3:10106359-10106378 | Msa0103080:intron | 35.0% | |
| GTCCTTTATTGTTAATGGAG+AGG | + | chr1_3:10106526-10106545 | Msa0103080:intron | 35.0% | |
| GGAAATCTGGAGAATACTTA+CGG | - | chr1_3:10106822-10106841 | None:intergenic | 35.0% | |
| GTATTCTCCAGATTTCCTTT+CGG | + | chr1_3:10106825-10106844 | Msa0103080:intron | 35.0% | |
| GTTCCCTTTCTAAATGATTC+TGG | + | chr1_3:10106863-10106882 | Msa0103080:intron | 35.0% | |
| CCCATTATCATCCATTTACA+TGG | + | chr1_3:10106947-10106966 | Msa0103080:CDS | 35.0% | |
| ATCCATTTACATGGAAGATG+AGG | + | chr1_3:10106956-10106975 | Msa0103080:CDS | 35.0% | |
| TTGCTTGAACTATCTTTGGT+GGG | - | chr1_3:10107297-10107316 | None:intergenic | 35.0% | |
| TTTGCTTGAACTATCTTTGG+TGG | - | chr1_3:10107298-10107317 | None:intergenic | 35.0% | |
| ACCACGGAAAGATAAGATAT+CGG | - | chr1_3:10107339-10107358 | None:intergenic | 35.0% | |
| TCTTATCTTTCCGTGGTTTA+AGG | + | chr1_3:10107342-10107361 | Msa0103080:CDS | 35.0% | |
| ATAGTGAACTCCTTAAACCA+CGG | - | chr1_3:10107355-10107374 | None:intergenic | 35.0% | |
| !! | GTTCAAAAGCTTTGAAGAGT+TGG | + | chr1_3:10107581-10107600 | Msa0103080:CDS | 35.0% |
| ! | TTGGTTGTTGACTATGAAAG+CGG | + | chr1_3:10107600-10107619 | Msa0103080:CDS | 35.0% |
| CTTGTAAGACTTAAGAGGTA+AGG | - | chr1_3:10107729-10107748 | None:intergenic | 35.0% | |
| GATCAAGACCCTTAATTAGT+TGG | + | chr1_3:10107940-10107959 | Msa0103080:intron | 35.0% | |
| TGGTAGTCCCAACTAATTAA+GGG | - | chr1_3:10107951-10107970 | None:intergenic | 35.0% | |
| AAGGGATATGAGAGAATTAG+AGG | + | chr1_3:10108126-10108145 | Msa0103080:intron | 35.0% | |
| AGGGATATGAGAGAATTAGA+GGG | + | chr1_3:10108127-10108146 | Msa0103080:intron | 35.0% | |
| TGAGAGAATTAGAGGGAATT+TGG | + | chr1_3:10108134-10108153 | Msa0103080:intron | 35.0% | |
| GAGAGAATTAGAGGGAATTT+GGG | + | chr1_3:10108135-10108154 | Msa0103080:intron | 35.0% | |
| GTGTGTGCAGAATCAATAAT+AGG | - | chr1_3:10108213-10108232 | None:intergenic | 35.0% | |
| AAGCAGATATAGTGCTTTAC+TGG | - | chr1_3:10108346-10108365 | None:intergenic | 35.0% | |
| TTACATCTTTATTGGAGCTC+AGG | + | chr1_3:10108408-10108427 | Msa0103080:intron | 35.0% | |
| TTCTCTGTCAATTAAGTGAG+AGG | + | chr1_3:10108480-10108499 | Msa0103080:intron | 35.0% | |
| AGGAATGATAGTTAGATTCC+AGG | + | chr1_3:10108500-10108519 | Msa0103080:intron | 35.0% | |
| TTGAACTATGTAGTCTGTCA+GGG | + | chr1_3:10108715-10108734 | Msa0103080:intron | 35.0% | |
| AGAGCTACTAAAAGAAGTCA+AGG | + | chr1_3:10108766-10108785 | Msa0103080:CDS | 35.0% | |
| AAGTCAAGGTTATGCTTGTT+TGG | + | chr1_3:10108780-10108799 | Msa0103080:intron | 35.0% | |
| ACTATTGGAGTATGCATCTT+TGG | + | chr1_3:10109055-10109074 | Msa0103080:intron | 35.0% | |
| CTATTGGAGTATGCATCTTT+GGG | + | chr1_3:10109056-10109075 | Msa0103080:intron | 35.0% | |
| TATTGGAGTATGCATCTTTG+GGG | + | chr1_3:10109057-10109076 | Msa0103080:intron | 35.0% | |
| TGGATGTAATTCTCTCATAG+AGG | + | chr1_3:10109126-10109145 | Msa0103080:intron | 35.0% | |
| AGCTCTTGAAACATTGTCTA+TGG | + | chr1_3:10109258-10109277 | Msa0103080:CDS | 35.0% | |
| CTGAGATGTTGCATTTGAAT+TGG | - | chr1_3:10109293-10109312 | None:intergenic | 35.0% | |
| AACAGAAAAACATAGCACCA+CGG | - | chr1_3:10109376-10109395 | None:intergenic | 35.0% | |
| TCAAAACCATCATAGCAAAC+AGG | - | chr1_3:10109494-10109513 | None:intergenic | 35.0% | |
| !!! | CTATGATGGTTTTGAACCTT+CGG | + | chr1_3:10109499-10109518 | Msa0103080:CDS | 35.0% |
| !!! | TATGATGGTTTTGAACCTTC+GGG | + | chr1_3:10109500-10109519 | Msa0103080:CDS | 35.0% |
| !! | TGATTTGGTACTGAGTTTGA+AGG | + | chr1_3:10109706-10109725 | Msa0103080:intron | 35.0% |
| ! | GATTTGGTACTGAGTTTGAA+GGG | + | chr1_3:10109707-10109726 | Msa0103080:intron | 35.0% |
| AGAGTGTAACTATGTATCAG+AGG | - | chr1_3:10109942-10109961 | None:intergenic | 35.0% | |
| AGAGTGTAACTATGTATCAG+AGG | - | chr1_3:10109942-10109961 | None:intergenic | 35.0% | |
| TTGAAGAAAATTGAGACGAC+TGG | + | chr1_3:10110290-10110309 | Msa0103080:CDS | 35.0% | |
| TCCAAACTTCAATCATGTAG+CGG | - | chr1_3:10110316-10110335 | None:intergenic | 35.0% | |
| ! | GAGGAAAAGTTGAGTTTTTG+TGG | + | chr1_3:10110360-10110379 | Msa0103080:CDS | 35.0% |
| ! | CTCAGAAGTTTAGTCTTCAA+AGG | + | chr1_3:10110441-10110460 | Msa0103080:CDS | 35.0% |
| ! | TTAGTCTTCAAAGGATTCTC+AGG | + | chr1_3:10110450-10110469 | Msa0103080:CDS | 35.0% |
| TCCTATGTTCCACTGAATAA+TGG | + | chr1_3:10110484-10110503 | Msa0103080:intron | 35.0% | |
| TCCATTATTCAGTGGAACAT+AGG | - | chr1_3:10110488-10110507 | None:intergenic | 35.0% | |
| !! | GTTCCACTGAATAATGGATT+TGG | + | chr1_3:10110490-10110509 | Msa0103080:intron | 35.0% |
| AGTCCAAATCCATTATTCAG+TGG | - | chr1_3:10110496-10110515 | None:intergenic | 35.0% | |
| TGTAGTTGTAGCGAGATAAT+GGG | + | chr1_3:10110549-10110568 | Msa0103080:intron | 35.0% | |
| !! | GAATATTTGAGAAGTACCAG+CGG | - | chr1_3:10110595-10110614 | None:intergenic | 35.0% |
| !!! | TGCTGACATTTTTTTCTTCC+AGG | + | chr1_3:10110632-10110651 | Msa0103080:CDS | 35.0% |
| CCAGATTTATAAGGATGAGT+TGG | - | chr1_3:10110854-10110873 | None:intergenic | 35.0% | |
| CCAACTCATCCTTATAAATC+TGG | + | chr1_3:10110851-10110870 | Msa0103080:intron | 35.0% | |
| !!! | AAATCTGGCTTTTAGATGAG+GGG | + | chr1_3:10110866-10110885 | Msa0103080:intron | 35.0% |
| GCCTTATCTGTAATCTATGT+GGG | + | chr1_3:10110915-10110934 | Msa0103080:intron | 35.0% | |
| TCCCACATAGATTACAGATA+AGG | - | chr1_3:10110919-10110938 | None:intergenic | 35.0% | |
| TTTCCAATAGGTTGCTACAA+TGG | + | chr1_3:10110946-10110965 | Msa0103080:intron | 35.0% | |
| GCAATTGATTAAGACATCCA+GGG | - | chr1_3:10111024-10111043 | None:intergenic | 35.0% | |
| TGCAATTGATTAAGACATCC+AGG | - | chr1_3:10111025-10111044 | None:intergenic | 35.0% | |
| CAAATTGACAACTACAGATG+AGG | - | chr1_3:10111205-10111224 | None:intergenic | 35.0% | |
| TTCGTTGATCTATTCCCATT+TGG | - | chr1_3:10111288-10111307 | None:intergenic | 35.0% | |
| ATACCGTGTGACAAAATAAC+TGG | - | chr1_3:10111364-10111383 | None:intergenic | 35.0% | |
| ! | TGATTTTCAGACATGTTACC+TGG | + | chr1_3:10111459-10111478 | Msa0103080:intron | 35.0% |
| ! | CCCATTATCATGCATTTTCA+TGG | + | chr1_3:10111518-10111537 | Msa0103080:CDS | 35.0% |
| TGTGGCTATTTGTTCATTCA+TGG | + | chr1_3:10111751-10111770 | Msa0103080:intron | 35.0% | |
| TCTTAATGTAGTCCAAGCAT+GGG | - | chr1_3:10111917-10111936 | None:intergenic | 35.0% | |
| TTCTTAATGTAGTCCAAGCA+TGG | - | chr1_3:10111918-10111937 | None:intergenic | 35.0% | |
| TTAAGAAACTTGTCTTACCG+TGG | + | chr1_3:10111931-10111950 | Msa0103080:CDS | 35.0% | |
| ACAGTAAACTCGTTAAACCA+CGG | - | chr1_3:10111951-10111970 | None:intergenic | 35.0% | |
| ! | ATGGTTGCTGACTATGAAAT+CGG | + | chr1_3:10112183-10112202 | Msa0103080:CDS | 35.0% |
| TTTAATGACTTCGACAAAGC+TGG | - | chr1_3:10112234-10112253 | None:intergenic | 35.0% | |
| CAAGCTAAATGATTGTTTCC+TGG | + | chr1_3:10112550-10112569 | Msa0103080:intron | 35.0% | |
| !! | TGAATTTGTCTTTGGTTTGC+AGG | + | chr1_3:10112726-10112745 | Msa0103080:intron | 35.0% |
| CGATCCAACTCATTCAAAAT+AGG | - | chr1_3:10112960-10112979 | None:intergenic | 35.0% | |
| TGATACCTCTTACTGAGATA+AGG | + | chr1_3:10113038-10113057 | Msa0103080:three_prime_UTR | 35.0% | |
| !! | AGTAAGAGGTATCAGATACA+TGG | - | chr1_3:10113102-10113121 | None:intergenic | 35.0% |
| TGATACCTCTTACTGAGATA+AGG | + | chr1_3:10113038-10113057 | Msa0103080:three_prime_UTR | 35.0% | |
| TCGAATTTCTGCAATGTTGC+AGG | + | chr1_3:10105139-10105158 | Msa0103080:intron | 40.0% | |
| GTGAACAAGTTAACATCTGC+GGG | + | chr1_3:10105723-10105742 | Msa0103080:CDS | 40.0% | |
| GGGTTGTCGAGTCAAAATAT+GGG | + | chr1_3:10105743-10105762 | Msa0103080:CDS | 40.0% | |
| AGCTCCACCATTAATCTCTT+TGG | - | chr1_3:10105910-10105929 | None:intergenic | 40.0% | |
| TGAGCTATATCTAACACACG+AGG | - | chr1_3:10105945-10105964 | None:intergenic | 40.0% | |
| ACAGCCTTAAAAGGATTGTC+AGG | + | chr1_3:10105970-10105989 | Msa0103080:CDS | 40.0% | |
| GTTCACTTCGTCCCATTATT+TGG | - | chr1_3:10106098-10106117 | None:intergenic | 40.0% | |
| ! | AATAATGGGACGAAGTGAAC+AGG | + | chr1_3:10106098-10106117 | Msa0103080:CDS | 40.0% |
| ! | TGCTGACATATTTTTCCTCC+AGG | + | chr1_3:10106164-10106183 | Msa0103080:CDS | 40.0% |
| AGAAAATGGTAAACTGCACC+TGG | - | chr1_3:10106185-10106204 | None:intergenic | 40.0% | |
| GTAGGCCTCAAATCAGAAAA+TGG | - | chr1_3:10106199-10106218 | None:intergenic | 40.0% | |
| TTACATAATGGCGCCCTTAT+AGG | + | chr1_3:10106284-10106303 | Msa0103080:intron | 40.0% | |
| TGGCAACTATAGATGAGACT+AGG | - | chr1_3:10106641-10106660 | None:intergenic | 40.0% | |
| ACATTAGCCGAAAGGAAATC+TGG | - | chr1_3:10106835-10106854 | None:intergenic | 40.0% | |
| CCGCCAGAATCATTTAGAAA+GGG | - | chr1_3:10106869-10106888 | None:intergenic | 40.0% | |
| CCCTTTCTAAATGATTCTGG+CGG | + | chr1_3:10106866-10106885 | Msa0103080:intron | 40.0% | |
| CCTTTCTAAATGATTCTGGC+GGG | + | chr1_3:10106867-10106886 | Msa0103080:intron | 40.0% | |
| ! | GGATTTTCAGACATGTTACC+TGG | + | chr1_3:10106888-10106907 | Msa0103080:intron | 40.0% |
| CTCCTCATCTTCCATGTAAA+TGG | - | chr1_3:10106961-10106980 | None:intergenic | 40.0% | |
| CATTTACATGGAAGATGAGG+AGG | + | chr1_3:10106959-10106978 | Msa0103080:CDS | 40.0% | |
| ! | GGGTTTGCTTGAACTATCTT+TGG | - | chr1_3:10107301-10107320 | None:intergenic | 40.0% |
| ATCGGATGTACTCTAAGCAT+GGG | - | chr1_3:10107321-10107340 | None:intergenic | 40.0% | |
| TATCGGATGTACTCTAAGCA+TGG | - | chr1_3:10107322-10107341 | None:intergenic | 40.0% | |
| TCCGATATCTTATCTTTCCG+TGG | + | chr1_3:10107335-10107354 | Msa0103080:CDS | 40.0% | |
| GTGGTTTAAGGAGTTCACTA+TGG | + | chr1_3:10107354-10107373 | Msa0103080:CDS | 40.0% | |
| ACTTTGACAAAGCCAGTTTG+AGG | - | chr1_3:10107644-10107663 | None:intergenic | 40.0% | |
| AAATCTGCACTGTACGTACT+AGG | + | chr1_3:10107751-10107770 | Msa0103080:intron | 40.0% | |
| GGTAGGCAATCTTTATACTC+AGG | + | chr1_3:10107772-10107791 | Msa0103080:intron | 40.0% | |
| CTGGTAGTCCCAACTAATTA+AGG | - | chr1_3:10107952-10107971 | None:intergenic | 40.0% | |
| TAATTAGTTGGGACTACCAG+AGG | + | chr1_3:10107952-10107971 | Msa0103080:intron | 40.0% | |
| AGAATTAGAGGGAATTTGGG+AGG | + | chr1_3:10108138-10108157 | Msa0103080:intron | 40.0% | |
| GAATTAGAGGGAATTTGGGA+GGG | + | chr1_3:10108139-10108158 | Msa0103080:intron | 40.0% | |
| !! | TATTGATTCTGCACACACCT+TGG | + | chr1_3:10108215-10108234 | Msa0103080:intron | 40.0% |
| ! | ATTGATTCTGCACACACCTT+GGG | + | chr1_3:10108216-10108235 | Msa0103080:intron | 40.0% |
| AAATTCTCAATTCTGGCCCA+AGG | - | chr1_3:10108235-10108254 | None:intergenic | 40.0% | |
| TTGGGCCAGAATTGAGAATT+TGG | + | chr1_3:10108234-10108253 | Msa0103080:intron | 40.0% | |
| TTTACTGGAGGAGGTAATGA+TGG | - | chr1_3:10108331-10108350 | None:intergenic | 40.0% | |
| ATATAGTGCTTTACTGGAGG+AGG | - | chr1_3:10108340-10108359 | None:intergenic | 40.0% | |
| CAGATATAGTGCTTTACTGG+AGG | - | chr1_3:10108343-10108362 | None:intergenic | 40.0% | |
| CCACAGAAACCTAAGCATAA+AGG | - | chr1_3:10108531-10108550 | None:intergenic | 40.0% | |
| CCTTTATGCTTAGGTTTCTG+TGG | + | chr1_3:10108528-10108547 | Msa0103080:intron | 40.0% | |
| CTTGAACTATGTAGTCTGTC+AGG | + | chr1_3:10108714-10108733 | Msa0103080:intron | 40.0% | |
| ATTGGAGTATGCATCTTTGG+GGG | + | chr1_3:10109058-10109077 | Msa0103080:intron | 40.0% | |
| !! | AATGTTTTTACACATGCCGC+AGG | - | chr1_3:10109094-10109113 | None:intergenic | 40.0% |
| GACAACAACTATTGAGTCAG+TGG | - | chr1_3:10109199-10109218 | None:intergenic | 40.0% | |
| TGACTCAATAGTTGTTGTCC+AGG | + | chr1_3:10109200-10109219 | Msa0103080:intron | 40.0% | |
| GACTCAATAGTTGTTGTCCA+GGG | + | chr1_3:10109201-10109220 | Msa0103080:intron | 40.0% | |
| TCCAGGGAACCAATATCAAT+AGG | + | chr1_3:10109217-10109236 | Msa0103080:intron | 40.0% | |
| CCAGGGAACCAATATCAATA+GGG | + | chr1_3:10109218-10109237 | Msa0103080:intron | 40.0% | |
| CAGGGAACCAATATCAATAG+GGG | + | chr1_3:10109219-10109238 | Msa0103080:intron | 40.0% | |
| TCTGCTTCCCCTATTGATAT+TGG | - | chr1_3:10109229-10109248 | None:intergenic | 40.0% | |
| ! | GTGCTATGTTTTTCTGTTGC+AGG | + | chr1_3:10109378-10109397 | Msa0103080:intron | 40.0% |
| ! | TTTGAGACTGTGAAGAGTGT+TGG | + | chr1_3:10109413-10109432 | Msa0103080:CDS | 40.0% |
| !! | TTGAGACTGTGAAGAGTGTT+GGG | + | chr1_3:10109414-10109433 | Msa0103080:CDS | 40.0% |
| !!! | ATGATGGTTTTGAACCTTCG+GGG | + | chr1_3:10109501-10109520 | Msa0103080:CDS | 40.0% |
| !!! | CAGCAATCACTATTTTGACC+CGG | - | chr1_3:10110026-10110045 | None:intergenic | 40.0% |
| !!! | CAGCAATCACTATTTTGACC+CGG | - | chr1_3:10110026-10110045 | None:intergenic | 40.0% |
| AGTTTGGAAAGCTATTGGGA+TGG | + | chr1_3:10110328-10110347 | Msa0103080:CDS | 40.0% | |
| GAAAGCTATTGGGATGGATA+TGG | + | chr1_3:10110334-10110353 | Msa0103080:CDS | 40.0% | |
| TGAGCTATATCCAACACAAG+CGG | - | chr1_3:10110425-10110444 | None:intergenic | 40.0% | |
| ATCTCGCTACAACTACAGTT+TGG | - | chr1_3:10110546-10110565 | None:intergenic | 40.0% | |
| CTGTAGTTGTAGCGAGATAA+TGG | + | chr1_3:10110548-10110567 | Msa0103080:intron | 40.0% | |
| AACAATGTTCATATAGGCCC+AGG | + | chr1_3:10110750-10110769 | Msa0103080:intron | 40.0% | |
| ! | GGCCTTATCTGTAATCTATG+TGG | + | chr1_3:10110914-10110933 | Msa0103080:intron | 40.0% |
| CAACCATTGTAGCAACCTAT+TGG | - | chr1_3:10110952-10110971 | None:intergenic | 40.0% | |
| ATAGGTCGACATTTGCCAAA+TGG | + | chr1_3:10111270-10111289 | Msa0103080:intron | 40.0% | |
| TAGGTCGACATTTGCCAAAT+GGG | + | chr1_3:10111271-10111290 | Msa0103080:intron | 40.0% | |
| ! | ATGCATTTTCATGGAAGACG+AGG | + | chr1_3:10111527-10111546 | Msa0103080:CDS | 40.0% |
| ! | GAGGAGGTATGTTGCTAATA+GGG | + | chr1_3:10111546-10111565 | Msa0103080:intron | 40.0% |
| GTGGTTTAACGAGTTTACTG+TGG | + | chr1_3:10111950-10111969 | Msa0103080:CDS | 40.0% | |
| TTTGTGCTTCCGTTCATTCT+AGG | + | chr1_3:10112139-10112158 | Msa0103080:intron | 40.0% | |
| ! | AAAGCTGGTTTAAGATCAGC+TGG | - | chr1_3:10112219-10112238 | None:intergenic | 40.0% |
| !! | GGTCATTGAGTGTTGAAGAG+AGG | + | chr1_3:10105160-10105179 | Msa0103080:intron | 45.0% |
| !!! | TACGACGGTTTTGAACCTTC+TGG | + | chr1_3:10105270-10105289 | Msa0103080:CDS | 45.0% |
| CGGGTTGTCGAGTCAAAATA+TGG | + | chr1_3:10105742-10105761 | Msa0103080:CDS | 45.0% | |
| AATTTGGAAAGCCACTGGGA+TGG | + | chr1_3:10105848-10105867 | Msa0103080:CDS | 45.0% | |
| ! | ATGGTGGAGCTGATAAGTAC+TGG | + | chr1_3:10105919-10105938 | Msa0103080:CDS | 45.0% |
| AAATGGTAAACTGCACCTGG+AGG | - | chr1_3:10106182-10106201 | None:intergenic | 45.0% | |
| CATTCCCAATTGGCAGATGT+CGG | - | chr1_3:10106719-10106738 | None:intergenic | 45.0% | |
| TTCGCTGATCCATTCCCAAT+TGG | - | chr1_3:10106729-10106748 | None:intergenic | 45.0% | |
| CCCGCCAGAATCATTTAGAA+AGG | - | chr1_3:10106870-10106889 | None:intergenic | 45.0% | |
| ATGTTACCTGGTCTGCAACA+AGG | + | chr1_3:10106900-10106919 | Msa0103080:CDS | 45.0% | |
| TGTTACCTGGTCTGCAACAA+GGG | + | chr1_3:10106901-10106920 | Msa0103080:CDS | 45.0% | |
| ! | GAGGAGGTATGCTGCTAATA+AGG | + | chr1_3:10106975-10106994 | Msa0103080:intron | 45.0% |
| AAGGAGTTCACTATGGAGTG+TGG | + | chr1_3:10107361-10107380 | Msa0103080:CDS | 45.0% | |
| AGGAGTTCACTATGGAGTGT+GGG | + | chr1_3:10107362-10107381 | Msa0103080:CDS | 45.0% | |
| ! | TGTTGACTATGAAAGCGGAG+AGG | + | chr1_3:10107605-10107624 | Msa0103080:CDS | 45.0% |
| CTCAGGACTGAAACGATGAA+TGG | + | chr1_3:10107789-10107808 | Msa0103080:intron | 45.0% | |
| GAAAGACTAAAACGGCGAAG+AGG | + | chr1_3:10108080-10108099 | Msa0103080:intron | 45.0% | |
| !! | AAGAGGAAGGTTAGCCTGTT+AGG | + | chr1_3:10108097-10108116 | Msa0103080:intron | 45.0% |
| CATCTTTATTGGAGCTCAGG+TGG | + | chr1_3:10108411-10108430 | Msa0103080:intron | 45.0% | |
| CTAAGCATAAAGGTAGTGCC+TGG | - | chr1_3:10108521-10108540 | None:intergenic | 45.0% | |
| CAGGCACTACCTTTATGCTT+AGG | + | chr1_3:10108519-10108538 | Msa0103080:intron | 45.0% | |
| TGTCAGGGAACACTTTCGAA+AGG | + | chr1_3:10108730-10108749 | Msa0103080:CDS | 45.0% | |
| ! | ACCAGGTAATGAGCTGATTC+AGG | + | chr1_3:10108907-10108926 | Msa0103080:intron | 45.0% |
| !! | CCCTATTGATATTGGTTCCC+TGG | - | chr1_3:10109221-10109240 | None:intergenic | 45.0% |
| !! | TGAGACTGTGAAGAGTGTTG+GGG | + | chr1_3:10109415-10109434 | Msa0103080:CDS | 45.0% |
| ! | GCTTGTTGGCAAGGATGTTA+AGG | - | chr1_3:10109466-10109485 | None:intergenic | 45.0% |
| CCATCATAGCAAACAGGATC+AGG | - | chr1_3:10109488-10109507 | None:intergenic | 45.0% | |
| !! | CCTGATCCTGTTTGCTATGA+TGG | + | chr1_3:10109485-10109504 | Msa0103080:CDS | 45.0% |
| ! | CAATAGTTCTGCTGAGCTGT+AGG | + | chr1_3:10109908-10109927 | Msa0103080:intron | 45.0% |
| GTGAACAAGCTAGTATCTGC+TGG | + | chr1_3:10109997-10110016 | Msa0103080:intron | 45.0% | |
| ! | CAATAGTTCTGCTGAGCTGT+AGG | + | chr1_3:10109908-10109927 | Msa0103080:intron | 45.0% |
| GTGAACAAGCTAGTATCTGC+TGG | + | chr1_3:10109997-10110016 | Msa0103080:intron | 45.0% | |
| GCCGCTACATGATTGAAGTT+TGG | + | chr1_3:10110312-10110331 | Msa0103080:CDS | 45.0% | |
| GCTATTGGGATGGATATGGA+AGG | + | chr1_3:10110338-10110357 | Msa0103080:CDS | 45.0% | |
| ATTGGGATGGATATGGAAGG+AGG | + | chr1_3:10110341-10110360 | Msa0103080:CDS | 45.0% | |
| AGTGAACATGAAGAATCCGC+TGG | + | chr1_3:10110576-10110595 | Msa0103080:CDS | 45.0% | |
| ATGTCAGCACATTGCATGCA+TGG | - | chr1_3:10110621-10110640 | None:intergenic | 45.0% | |
| GGAAAAAAGTGAACCGTACC+TGG | - | chr1_3:10110653-10110672 | None:intergenic | 45.0% | |
| ATGTTCATATAGGCCCAGGA+TGG | + | chr1_3:10110754-10110773 | Msa0103080:intron | 45.0% | |
| AGACTAACCACAACCATCCT+GGG | - | chr1_3:10110770-10110789 | None:intergenic | 45.0% | |
| TAGACTAACCACAACCATCC+TGG | - | chr1_3:10110771-10110790 | None:intergenic | 45.0% | |
| TGACAACTACAGATGAGGCT+AGG | - | chr1_3:10111200-10111219 | None:intergenic | 45.0% | |
| ! | CATTTTCATGGAAGACGAGG+AGG | + | chr1_3:10111530-10111549 | Msa0103080:CDS | 45.0% |
| ! | CGAGGAGGTATGTTGCTAAT+AGG | + | chr1_3:10111545-10111564 | Msa0103080:intron | 45.0% |
| !! | GTTCTGAAGTGTTGCCTTAC+AGG | - | chr1_3:10112585-10112604 | None:intergenic | 45.0% |
| GCAACACTTCAGAACGAACA+AGG | + | chr1_3:10112590-10112609 | Msa0103080:CDS | 45.0% | |
| CCATGCCTTATCTCAGTAAG+AGG | - | chr1_3:10113046-10113065 | None:intergenic | 45.0% | |
| CCTCTTACTGAGATAAGGCA+TGG | + | chr1_3:10113043-10113062 | Msa0103080:three_prime_UTR | 45.0% | |
| CCATGCCTTATCTCAGTAAG+AGG | - | chr1_3:10113046-10113065 | None:intergenic | 45.0% | |
| !! | TAATAACAATTAAAATTAAA+TGG | - | chr1_3:10108957-10108976 | None:intergenic | 5.0% |
| TTGAAGAGGTTCTGCGTCTC+CGG | - | chr1_3:10105012-10105031 | None:intergenic | 50.0% | |
| GCAATGTGCATTCGTCCAGA+AGG | - | chr1_3:10105288-10105307 | None:intergenic | 50.0% | |
| TGGACGAATGCACATTGCTC+AGG | + | chr1_3:10105290-10105309 | Msa0103080:CDS | 50.0% | |
| GTCAACGAGTCAGTGTCATG+CGG | - | chr1_3:10105392-10105411 | None:intergenic | 50.0% | |
| TCCTTCGAAATCCATCCCAG+TGG | - | chr1_3:10105862-10105881 | None:intergenic | 50.0% | |
| ! | ACTGGGATGGATTTCGAAGG+AGG | + | chr1_3:10105861-10105880 | Msa0103080:CDS | 50.0% |
| ! | CTGGGATGGATTTCGAAGGA+GGG | + | chr1_3:10105862-10105881 | Msa0103080:CDS | 50.0% |
| ATGTCAGCACACTGCATGCA+TGG | - | chr1_3:10106153-10106172 | None:intergenic | 50.0% | |
| CATCCCTCGTGAGCCTATAA+GGG | - | chr1_3:10106300-10106319 | None:intergenic | 50.0% | |
| ACATCCCTCGTGAGCCTATA+AGG | - | chr1_3:10106301-10106320 | None:intergenic | 50.0% | |
| ATAGGCCGACATCTGCCAAT+TGG | + | chr1_3:10106711-10106730 | Msa0103080:intron | 50.0% | |
| TAGGCCGACATCTGCCAATT+GGG | + | chr1_3:10106712-10106731 | Msa0103080:intron | 50.0% | |
| CGACATCTGCCAATTGGGAA+TGG | + | chr1_3:10106717-10106736 | Msa0103080:CDS | 50.0% | |
| GGAGTTCACTATGGAGTGTG+GGG | + | chr1_3:10107363-10107382 | Msa0103080:CDS | 50.0% | |
| ATGGAGTGTGGGGCAGATAA+TGG | + | chr1_3:10107373-10107392 | Msa0103080:CDS | 50.0% | |
| ! | AGTGTGGGGCAGATAATGGT+GGG | + | chr1_3:10107377-10107396 | Msa0103080:CDS | 50.0% |
| ACATCCAGAGGACCTCAAAC+TGG | + | chr1_3:10107629-10107648 | Msa0103080:CDS | 50.0% | |
| ! | AAAGCCAGTTTGAGGTCCTC+TGG | - | chr1_3:10107636-10107655 | None:intergenic | 50.0% |
| CTGCACTGTACGTACTAGGT+AGG | + | chr1_3:10107755-10107774 | Msa0103080:intron | 50.0% | |
| GAGGCTAACACACTCTGATG+TGG | + | chr1_3:10107993-10108012 | Msa0103080:intron | 50.0% | |
| GACTAAAACGGCGAAGAGGA+AGG | + | chr1_3:10108084-10108103 | Msa0103080:intron | 50.0% | |
| TTAGCCTGTTAGGCGAGGAA+AGG | + | chr1_3:10108107-10108126 | Msa0103080:intron | 50.0% | |
| TAGCCTGTTAGGCGAGGAAA+GGG | + | chr1_3:10108108-10108127 | Msa0103080:intron | 50.0% | |
| TATCCCTTTCCTCGCCTAAC+AGG | - | chr1_3:10108114-10108133 | None:intergenic | 50.0% | |
| ATTGGAGCTCAGGTGGTAAG+TGG | + | chr1_3:10108418-10108437 | Msa0103080:intron | 50.0% | |
| GCCTGAATCAGCTCATTACC+TGG | - | chr1_3:10108911-10108930 | None:intergenic | 50.0% | |
| TGCACTGTTCTCAACTCCTG+AGG | + | chr1_3:10109330-10109349 | Msa0103080:intron | 50.0% | |
| GCAAACAGGATCAGGCTTGT+TGG | - | chr1_3:10109480-10109499 | None:intergenic | 50.0% | |
| GTTCTGCTGAGCTGTAGGTA+AGG | + | chr1_3:10109913-10109932 | Msa0103080:intron | 50.0% | |
| ! | AGCTAGTATCTGCTGGTTGC+CGG | + | chr1_3:10110004-10110023 | Msa0103080:intron | 50.0% |
| GTTCTGCTGAGCTGTAGGTA+AGG | + | chr1_3:10109913-10109932 | Msa0103080:intron | 50.0% | |
| ! | AGCTAGTATCTGCTGGTTGC+CGG | + | chr1_3:10110004-10110023 | Msa0103080:intron | 50.0% |
| GTGGTCCTCAAAAGAGATCG+AGG | + | chr1_3:10110379-10110398 | Msa0103080:CDS | 50.0% | |
| ! | TCTGGCCTCGATCTCTTTTG+AGG | - | chr1_3:10110387-10110406 | None:intergenic | 50.0% |
| ATATAGGCCCAGGATGGTTG+TGG | + | chr1_3:10110760-10110779 | Msa0103080:intron | 50.0% | |
| CACGGTATGCATTCTTCTCC+TGG | + | chr1_3:10111376-10111395 | Msa0103080:intron | 50.0% | |
| ATGTTACCTGGTCCACAGCA+AGG | + | chr1_3:10111471-10111490 | Msa0103080:CDS | 50.0% | |
| TGTTACCTGGTCCACAGCAA+GGG | + | chr1_3:10111472-10111491 | Msa0103080:CDS | 50.0% | |
| ATCTTCTCTTGCCCTTGCTG+TGG | - | chr1_3:10111486-10111505 | None:intergenic | 50.0% | |
| TTCCCTCGGCAATCTTTGGT+GGG | - | chr1_3:10111893-10111912 | None:intergenic | 50.0% | |
| TTTCCCTCGGCAATCTTTGG+TGG | - | chr1_3:10111894-10111913 | None:intergenic | 50.0% | |
| !! | GTGGAGCGTAGTGCTGATAA+TGG | + | chr1_3:10111969-10111988 | Msa0103080:CDS | 50.0% |
| !! | GAGCGTAGTGCTGATAATGG+TGG | + | chr1_3:10111972-10111991 | Msa0103080:CDS | 50.0% |
| AAGTCAAGGTTGGGCTCGTT+TGG | + | chr1_3:10112634-10112653 | Msa0103080:intron | 50.0% | |
| ! | GGCATGGCTGTTGCATCTTT+TGG | + | chr1_3:10113059-10113078 | Msa0103080:three_prime_UTR | 50.0% |
| ! | GCCACTGGGATGGATTTCGA+AGG | + | chr1_3:10105858-10105877 | Msa0103080:CDS | 55.0% |
| TCTTGCCCTTGTTGCAGACC+AGG | - | chr1_3:10106909-10106928 | None:intergenic | 55.0% | |
| ! | GAGTGTGGGGCAGATAATGG+TGG | + | chr1_3:10107376-10107395 | Msa0103080:CDS | 55.0% |
| ! | AAGCGGAGAGGTACATCCAG+AGG | + | chr1_3:10107617-10107636 | Msa0103080:CDS | 55.0% |
| GGACTACCAGAGGAGAGCAA+GGG | + | chr1_3:10107962-10107981 | Msa0103080:intron | 55.0% | |
| GACTACCAGAGGAGAGCAAG+GGG | + | chr1_3:10107963-10107982 | Msa0103080:intron | 55.0% | |
| ACTACCAGAGGAGAGCAAGG+GGG | + | chr1_3:10107964-10107983 | Msa0103080:intron | 55.0% | |
| !! | GAAGGTTAGCCTGTTAGGCG+AGG | + | chr1_3:10108102-10108121 | Msa0103080:intron | 55.0% |
| TGCAGGCTTACAGAGTCACC+AGG | + | chr1_3:10108890-10108909 | Msa0103080:intron | 55.0% | |
| ! | TGGGGGTGTGTTGAATCCTG+CGG | + | chr1_3:10109075-10109094 | Msa0103080:intron | 55.0% |
| TCTGTTGCAGGTCGTTGCAG+AGG | + | chr1_3:10109390-10109409 | Msa0103080:intron | 55.0% | |
| ! | TGGGGAAGAGTGCACTCAAG+AGG | + | chr1_3:10109433-10109452 | Msa0103080:CDS | 55.0% |
| !! | CAGGATCAGGCTTGTTGGCA+AGG | - | chr1_3:10109475-10109494 | None:intergenic | 55.0% |
| GCAATGTTCATTCGCCCCGA+AGG | - | chr1_3:10109518-10109537 | None:intergenic | 55.0% | |
| GGGGCGAATGAACATTGCTC+AGG | + | chr1_3:10109520-10109539 | Msa0103080:CDS | 55.0% | |
| ! | GCTAGTATCTGCTGGTTGCC+GGG | + | chr1_3:10110005-10110024 | Msa0103080:intron | 55.0% |
| ! | GCTAGTATCTGCTGGTTGCC+GGG | + | chr1_3:10110005-10110024 | Msa0103080:intron | 55.0% |
| AGGCCAGAGCTGACGAGTAT+TGG | + | chr1_3:10110399-10110418 | Msa0103080:CDS | 55.0% | |
| !! | CGAGTATTGGCCGCTTGTGT+TGG | + | chr1_3:10110412-10110431 | Msa0103080:CDS | 55.0% |
| TGTTCAGTTGCTCACAGCCC+TGG | + | chr1_3:10111004-10111023 | Msa0103080:intron | 55.0% | |
| TTGCCCACCAAAGATTGCCG+AGG | + | chr1_3:10111887-10111906 | Msa0103080:CDS | 55.0% | |
| TGCCCACCAAAGATTGCCGA+GGG | + | chr1_3:10111888-10111907 | Msa0103080:CDS | 55.0% | |
| GGGTTTCCCTCGGCAATCTT+TGG | - | chr1_3:10111897-10111916 | None:intergenic | 55.0% | |
| GTCCAAGCATGGGTTTCCCT+CGG | - | chr1_3:10111907-10111926 | None:intergenic | 55.0% | |
| CCTTACAGGCTGCATGTTCC+AGG | - | chr1_3:10112571-10112590 | None:intergenic | 55.0% | |
| CCTGGAACATGCAGCCTGTA+AGG | + | chr1_3:10112568-10112587 | Msa0103080:intron | 55.0% | |
| GTGGAGGAAGGCGAGAAAGG+AGG | - | chr1_3:10104977-10104996 | None:intergenic | 60.0% | |
| ACGGTGGAGGAAGGCGAGAA+AGG | - | chr1_3:10104980-10104999 | None:intergenic | 60.0% | |
| CCATTGCTGACGGTGGAGGA+AGG | - | chr1_3:10104989-10105008 | None:intergenic | 60.0% | |
| CCTTCCTCCACCGTCAGCAA+TGG | + | chr1_3:10104986-10105005 | Msa0103080:exon | 60.0% | |
| GCGCCCTTATAGGCTCACGA+GGG | + | chr1_3:10106294-10106313 | Msa0103080:intron | 60.0% | |
| GGGACTACCAGAGGAGAGCA+AGG | + | chr1_3:10107961-10107980 | Msa0103080:intron | 60.0% | |
| CATTCCCCCTTGCTCTCCTC+TGG | - | chr1_3:10107971-10107990 | None:intergenic | 60.0% | |
| GAGAGCAAGGGGGAATGCAG+AGG | + | chr1_3:10107974-10107993 | Msa0103080:intron | 60.0% | |
| GAGGGAATTTGGGAGGGAGC+TGG | + | chr1_3:10108145-10108164 | Msa0103080:intron | 60.0% | |
| CGGCCAATACTCGTCAGCTC+TGG | - | chr1_3:10110405-10110424 | None:intergenic | 60.0% | |
| ! | TCTTGCCCTTGCTGTGGACC+AGG | - | chr1_3:10111480-10111499 | None:intergenic | 60.0% |
| TGCCGAGGGAAACCCATGCT+TGG | + | chr1_3:10111902-10111921 | Msa0103080:CDS | 60.0% | |
| CCTCCACCGTCAGCAATGGC+CGG | + | chr1_3:10104990-10105009 | Msa0103080:exon | 65.0% | |
| TCTCCGGCCATTGCTGACGG+TGG | - | chr1_3:10104996-10105015 | None:intergenic | 65.0% | |
| GCGTCTCCGGCCATTGCTGA+CGG | - | chr1_3:10104999-10105018 | None:intergenic | 65.0% | |
| GGCGCCCTTATAGGCTCACG+AGG | + | chr1_3:10106293-10106312 | Msa0103080:intron | 65.0% | |
| CCGGCCATTGCTGACGGTGG+AGG | - | chr1_3:10104993-10105012 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10104896 | 10113135 | 10104896 | ID=Msa0103080;Name=Msa0103080 |
| chr1_3 | mRNA | 10104896 | 10113135 | 10104896 | ID=Msa0103080-mRNA-1;Parent=Msa0103080;Name=Msa0103080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=109|1|1|1|1|1|20|367|753 |
| chr1_3 | exon | 10104896 | 10105063 | 10104896 | ID=Msa0103080-mRNA-1:exon:4145;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10105161 | 10105311 | 10105161 | ID=Msa0103080-mRNA-1:exon:4146;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10105702 | 10105991 | 10105702 | ID=Msa0103080-mRNA-1:exon:4147;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10106089 | 10106185 | 10106089 | ID=Msa0103080-mRNA-1:exon:4148;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10106715 | 10106820 | 10106715 | ID=Msa0103080-mRNA-1:exon:4149;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10106898 | 10106980 | 10106898 | ID=Msa0103080-mRNA-1:exon:4150;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10107259 | 10107404 | 10107259 | ID=Msa0103080-mRNA-1:exon:4151;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10107578 | 10107683 | 10107578 | ID=Msa0103080-mRNA-1:exon:4152;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10108728 | 10108787 | 10108728 | ID=Msa0103080-mRNA-1:exon:4153;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10108895 | 10108911 | 10108895 | ID=Msa0103080-mRNA-1:exon:4154;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10109222 | 10109314 | 10109222 | ID=Msa0103080-mRNA-1:exon:4155;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10109400 | 10109541 | 10109400 | ID=Msa0103080-mRNA-1:exon:4156;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10110182 | 10110471 | 10110182 | ID=Msa0103080-mRNA-1:exon:4157;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10110554 | 10110653 | 10110554 | ID=Msa0103080-mRNA-1:exon:4158;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10111274 | 10111379 | 10111274 | ID=Msa0103080-mRNA-1:exon:4159;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10111469 | 10111551 | 10111469 | ID=Msa0103080-mRNA-1:exon:4160;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10111855 | 10112000 | 10111855 | ID=Msa0103080-mRNA-1:exon:4161;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10112161 | 10112266 | 10112161 | ID=Msa0103080-mRNA-1:exon:4162;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10112582 | 10112641 | 10112582 | ID=Msa0103080-mRNA-1:exon:4163;Parent=Msa0103080-mRNA-1 |
| chr1_3 | exon | 10112748 | 10113135 | 10112748 | ID=Msa0103080-mRNA-1:exon:4164;Parent=Msa0103080-mRNA-1 |
| chr1_3 | five_prime_UTR | 10104896 | 10105004 | 10104896 | ID=Msa0103080-mRNA-1:five_prime_utr;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10105005 | 10105063 | 10105005 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10105161 | 10105311 | 10105161 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10105702 | 10105991 | 10105702 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10106089 | 10106185 | 10106089 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10106715 | 10106820 | 10106715 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10106898 | 10106980 | 10106898 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10107259 | 10107404 | 10107259 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10107578 | 10107683 | 10107578 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10108728 | 10108787 | 10108728 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10108895 | 10108911 | 10108895 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10109222 | 10109314 | 10109222 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10109400 | 10109541 | 10109400 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10110182 | 10110471 | 10110182 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10110554 | 10110653 | 10110554 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10111274 | 10111379 | 10111274 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10111469 | 10111551 | 10111469 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10111855 | 10112000 | 10111855 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10112161 | 10112266 | 10112161 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10112582 | 10112641 | 10112582 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | CDS | 10112748 | 10112768 | 10112748 | ID=Msa0103080-mRNA-1:cds;Parent=Msa0103080-mRNA-1 |
| chr1_3 | three_prime_UTR | 10112769 | 10113135 | 10112769 | ID=Msa0103080-mRNA-1:three_prime_utr;Parent=Msa0103080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
