AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109420 MtrunA17_Chr1g0166341 98.061 980 5 2 1 967 1 979 0.0 1998
Msa0109420 MtrunA17_Chr1g0204551 85.888 985 114 7 1 967 1 978 0.0 1740
Msa0109420 MtrunA17_Chr6g0481121 75.540 879 189 7 114 967 232 1109 0.0 1405
Msa0109420 MtrunA17_Chr2g0308031 71.742 867 224 4 114 967 57 915 0.0 1329
Msa0109420 MtrunA17_Chr4g0062941 68.679 878 254 4 103 967 7 876 0.0 1299
Msa0109420 MtrunA17_Chr4g0027691 54.665 911 376 12 79 967 76 971 0.0 999
Msa0109420 MtrunA17_Chr4g0027701 53.524 908 375 16 84 967 124 1008 0.0 927
Msa0109420 MtrunA17_Chr5g0418071 39.597 894 461 23 121 967 155 1016 0.0 592
Msa0109420 MtrunA17_Chr3g0118281 35.610 893 493 25 123 966 132 991 8.92e-159 493
Msa0109420 MtrunA17_Chr3g0121101 35.480 916 495 27 112 967 31 910 3.30e-155 481
Msa0109420 MtrunA17_Chr5g0440631 34.413 895 506 21 123 966 43 907 1.98e-152 474
Msa0109420 MtrunA17_Chr5g0440641 34.152 896 491 27 123 966 43 891 1.05e-144 453
Msa0109420 MtrunA17_Chr6g0467081 34.410 898 494 27 123 966 42 898 6.27e-144 451
Msa0109420 MtrunA17_Chr4g0043461 33.949 866 476 27 112 925 106 927 5.67e-143 451
Msa0109420 MtrunA17_Chr2g0291701 32.573 964 542 33 57 966 119 1028 1.21e-136 436
Msa0109420 MtrunA17_Chr3g0080331 33.686 662 369 18 259 896 9 624 1.97e-107 346
Msa0109420 MtrunA17_Chr6g0464401 82.857 70 12 0 636 705 3 72 1.13e-30 117
Msa0109420 MtrunA17_Chr3g0133931 88.235 51 6 0 702 752 1 51 3.65e-26 102
Msa0109420 MtrunA17_Chr1g0164751 27.090 299 150 12 526 821 45 278 2.33e-19 89.7
Msa0109420 MtrunA17_Chr3g0080321 30.366 191 112 5 108 280 9 196 8.54e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109420 AT5G43810.4 80.202 990 171 6 1 967 1 988 0.0 1622
Msa0109420 AT5G43810.1 80.202 990 171 6 1 967 1 988 0.0 1622
Msa0109420 AT5G43810.2 80.202 990 171 6 1 967 1 988 0.0 1622
Msa0109420 AT5G43810.3 80.202 990 171 6 1 967 1 988 0.0 1622
Msa0109420 AT1G48410.1 74.659 880 199 5 111 967 170 1048 0.0 1387
Msa0109420 AT1G48410.3 74.490 882 199 6 111 967 170 1050 0.0 1382
Msa0109420 AT1G48410.2 74.490 882 199 6 111 967 170 1050 0.0 1382
Msa0109420 AT2G27880.1 54.002 937 389 16 57 967 77 997 0.0 985
Msa0109420 AT1G69440.1 37.212 911 475 25 102 967 132 990 0.0 560
Msa0109420 AT5G21150.1 35.484 899 494 24 118 967 35 896 2.46e-164 505
Msa0109420 AT2G27040.1 35.028 905 489 28 123 967 59 924 1.61e-160 496
Msa0109420 AT2G27040.2 35.028 905 489 28 123 967 59 924 1.61e-160 496
Msa0109420 AT2G32940.1 35.644 909 480 25 114 967 20 878 2.13e-147 460
Msa0109420 AT1G31280.1 34.615 832 479 21 138 938 181 978 1.22e-146 462
Msa0109420 AT5G21030.2 33.855 895 493 24 114 967 18 854 6.79e-146 455
Msa0109420 AT5G21030.1 33.855 895 489 25 114 967 18 850 7.03e-144 450
Msa0109420 AT1G31290.3 33.185 898 517 28 86 938 225 1084 2.26e-136 437
Msa0109420 AT1G31290.2 33.185 898 517 28 86 938 263 1122 5.52e-136 437
Msa0109420 AT1G31290.1 33.185 898 517 28 86 938 299 1158 1.27e-135 437

Find 257 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTTCATTTGCCTTAA+AGG 0.026526 1_3:-21393397 None:intergenic
GATCCTTATGCAAAGGAATT+TGG 0.108443 1_3:+21396554 Msa0109420:CDS
AAAATTTCAACATGCCTTTA+AGG 0.111439 1_3:+21393383 Msa0109420:exon
CTCTGTTGGATGACAAATTT+TGG 0.121587 1_3:-21398738 None:intergenic
ACCATGCAGAAAATGATTAA+TGG 0.201157 1_3:+21396910 Msa0109420:intron
TTAGGATTCCTAGATGTATT+TGG 0.219688 1_3:+21399915 Msa0109420:three_prime_UTR
CAGCTCATTATCATGTTCTA+TGG 0.229377 1_3:+21399146 Msa0109420:CDS
TATGAAGGCATGTGCTTCTT+TGG 0.255848 1_3:+21398465 Msa0109420:intron
AGAAGAAAGTATCGTGTTTC+CGG 0.262112 1_3:+21395929 Msa0109420:CDS
TGGAGCATCAGCACGCTTTC+CGG 0.267246 1_3:-21394939 None:intergenic
CTTCAACTTTAACTCCTCTA+AGG 0.275765 1_3:-21395886 None:intergenic
AATGGCCATGTTGTTGAAAA+TGG 0.277579 1_3:+21393670 Msa0109420:CDS
GAGTTTGTTGGCCAGCTATT+AGG 0.285998 1_3:+21395366 Msa0109420:CDS
GACATACCGACAATAATATT+TGG 0.295155 1_3:+21397683 Msa0109420:CDS
TGCACAACTATGAAAGTTAC+TGG 0.298156 1_3:-21398505 None:intergenic
TGCTTTCATTGAACCTCTTC+CGG 0.301756 1_3:+21395338 Msa0109420:CDS
TAGTGAAACCATACATTTCT+TGG 0.306075 1_3:-21396123 None:intergenic
GTTACTGGAGGTTGATAGTT+TGG 0.306393 1_3:-21398490 None:intergenic
ATCCTTATGCAAAGGAATTT+GGG 0.319535 1_3:+21396555 Msa0109420:CDS
ATTTGTTGGTTTCATTTAGA+AGG 0.323714 1_3:+21398107 Msa0109420:CDS
GATGTTACACACCCTGAAAA+TGG 0.324604 1_3:+21397710 Msa0109420:CDS
TGCTATGATAGACCTGTTTA+CGG 0.325262 1_3:-21394512 None:intergenic
CACGCATGCAAAAGAGGTTT+TGG 0.326718 1_3:-21391995 None:intergenic
GTAGAATTTATTTGCTTGTA+TGG 0.327165 1_3:+21400031 Msa0109420:three_prime_UTR
GAAGAAGAGGATGGAATTAA+TGG 0.339121 1_3:+21394661 Msa0109420:CDS
AAGCAATGAGAGAGTGAAAA+TGG 0.339251 1_3:-21392115 None:intergenic
TTGCTTGAGGTGGTGAAGTT+TGG 0.340353 1_3:-21393543 None:intergenic
ACTTTAGACGGTATTGAATC+AGG 0.348234 1_3:+21399972 Msa0109420:three_prime_UTR
TTTCTCGATCACGAGGTCTT+TGG 0.354565 1_3:-21396383 None:intergenic
CTTCCGGTGGTGGAGTTTGT+TGG 0.356229 1_3:+21395354 Msa0109420:CDS
TCATGTAATAATAACTATAT+AGG 0.362821 1_3:+21392228 Msa0109420:five_prime_UTR
CAAAGAAGCTTACATCATAT+TGG 0.364717 1_3:-21393843 None:intergenic
CAGATTAAGAAATCCCTTAG+AGG 0.366550 1_3:+21395872 Msa0109420:intron
AGATTACAATCCTTGCAAAT+AGG 0.366841 1_3:-21400084 None:intergenic
CTTTGTGGTGCTCTAATATC+AGG 0.372098 1_3:-21395137 None:intergenic
TGTATAAGTTCTTGTCTTTG+CGG 0.372846 1_3:-21397917 None:intergenic
GACAACAATGGCTCTCTCTA+TGG 0.375957 1_3:+21397267 Msa0109420:CDS
CACGAATTCTTCCCGCTCCT+TGG 0.376013 1_3:+21396612 Msa0109420:CDS
CTACACGGAGCCAGACCTTC+AGG 0.376192 1_3:+21399579 Msa0109420:CDS
ATCCCAAATTCCTTTGCATA+AGG 0.379063 1_3:-21396557 None:intergenic
ACGGCTTTCGAAGACACTTC+CGG 0.384817 1_3:-21394493 None:intergenic
GCATTGTAGATCGGGATAAC+AGG 0.388986 1_3:-21397144 None:intergenic
AATCCTTCTCCGAGCCTTTG+TGG 0.390284 1_3:-21395152 None:intergenic
CAAAACCAAAGGAAAAGAAT+TGG 0.390926 1_3:+21397221 Msa0109420:CDS
CTTAAACTCTCTCCAGGAAA+AGG 0.392474 1_3:-21394626 None:intergenic
TTGTAACTTCAGGCCAATCT+TGG 0.392778 1_3:-21397868 None:intergenic
TTTGATTTCCACCAACTTGA+AGG 0.393809 1_3:-21396168 None:intergenic
ATTGCTGTAGGAGTTTAATC+TGG 0.394523 1_3:+21397119 Msa0109420:intron
GGAAGAAGAAGGAGTAGAAA+TGG 0.400096 1_3:+21393574 Msa0109420:CDS
ATTTGCGAGACACTCGCATT+AGG 0.401362 1_3:+21399943 Msa0109420:three_prime_UTR
TCCGGCTGCACGCGTTGTCT+TGG 0.403176 1_3:-21399629 None:intergenic
CCACTAACTACACCACGAAC+AGG 0.406076 1_3:-21397965 None:intergenic
CATTGAACCTCTTCCGGTGG+TGG 0.406285 1_3:+21395344 Msa0109420:CDS
TCACTATAGTCACCTTTGAT+TGG 0.406602 1_3:+21393310 Msa0109420:five_prime_UTR
TCATATTCCACTGGCCAACT+TGG 0.409112 1_3:-21396767 None:intergenic
CTGTTTGTGCAGGGATTTGT+TGG 0.410749 1_3:+21398093 Msa0109420:intron
GAACCAGTCTCCTGAAGGTC+TGG 0.413055 1_3:-21399589 None:intergenic
CAAAGCTTTCTCCACCTGCT+CGG 0.413351 1_3:-21397172 None:intergenic
TATTGGTTCAAGTCCTTGTC+TGG 0.413420 1_3:-21393826 None:intergenic
ACGTTCTAGAGGCCTAGTTT+AGG 0.413740 1_3:+21399897 Msa0109420:three_prime_UTR
AAAGCTTTCTCCACCTGCTC+GGG 0.414217 1_3:-21397171 None:intergenic
CCTAGCTAGATATAAGCATA+AGG 0.418206 1_3:+21392158 Msa0109420:five_prime_UTR
GAATACTTCCAAGAAATGTA+TGG 0.419316 1_3:+21396115 Msa0109420:CDS
TCTGTAAGTGCTTAACATTA+AGG 0.420059 1_3:+21400104 Msa0109420:three_prime_UTR
ACTTACACAAGTTCTCTTGT+TGG 0.424572 1_3:-21395965 None:intergenic
ATGTTACACACCCTGAAAAT+GGG 0.425766 1_3:+21397711 Msa0109420:CDS
TGTTCTTGTGACATGACTAA+TGG 0.430689 1_3:-21393514 None:intergenic
ATAGTCGAGTTCTCGTCAAC+GGG 0.432821 1_3:-21396079 None:intergenic
GTTTCATTTAGAAGGGCAAC+AGG 0.434047 1_3:+21398115 Msa0109420:CDS
ACGAATTCTTCCCGCTCCTT+GGG 0.434211 1_3:+21396613 Msa0109420:CDS
TCTGAGTAGGCCTTATGCTT+TGG 0.435993 1_3:-21395196 None:intergenic
GCACAAATGTGTCAAGTCTC+TGG 0.436370 1_3:+21397015 Msa0109420:CDS
GTCTCTGAAGATCAACGTTA+AGG 0.436917 1_3:+21397516 Msa0109420:CDS
CTGTAGAATATAATCCTTTG+TGG 0.438850 1_3:-21398145 None:intergenic
CTTCCTTGCCTTCAAGTTGG+TGG 0.441080 1_3:+21396160 Msa0109420:CDS
TCGGGTTTCGCATTGTAGAT+CGG 0.442309 1_3:-21397153 None:intergenic
TTTGCTCAAAGACCAGGTTA+TGG 0.442754 1_3:+21393751 Msa0109420:CDS
TTCGCAGGTAACTATTACTC+CGG 0.443138 1_3:+21394474 Msa0109420:intron
CACTATGAGTCAAGCTAAGA+AGG 0.443980 1_3:+21393459 Msa0109420:CDS
TGTCTTCGAAAGCCGTAAAC+AGG 0.444331 1_3:+21394500 Msa0109420:CDS
CTTATACACGCATGCAAAAG+AGG 0.444351 1_3:-21392001 None:intergenic
AAACCATACAGCTGCTATTG+AGG 0.447363 1_3:-21397747 None:intergenic
AGGGGCAACGATATACTAAA+AGG 0.447695 1_3:+21396319 Msa0109420:CDS
TAAACAAAGATGGAAAATAT+AGG 0.448178 1_3:-21393199 None:intergenic
CCACCACTCTTTGCTTGAGG+TGG 0.448846 1_3:-21393553 None:intergenic
CTTCCACCACTCTTTGCTTG+AGG 0.453283 1_3:-21393556 None:intergenic
TACAGCTGCTATTGAGGGGC+TGG 0.457806 1_3:-21397741 None:intergenic
TCTACGAGTTGGATGCGATT+CGG 0.459130 1_3:+21398360 Msa0109420:CDS
ATGGGCCTTTCCCTCAATAT+CGG 0.459221 1_3:+21395218 Msa0109420:CDS
ACAGTTAAGTTTCTGTATGA+AGG 0.460322 1_3:+21400159 Msa0109420:three_prime_UTR
AATGTACAAGTAACTATTAG+AGG 0.461364 1_3:-21399824 None:intergenic
TCCAAGACAACGCGTGCAGC+CGG 0.464202 1_3:+21399628 Msa0109420:CDS
CTGCAGTCACGCTGGCATCC+AGG 0.466695 1_3:+21398775 Msa0109420:CDS
CGGGTTTCGCATTGTAGATC+GGG 0.466742 1_3:-21397152 None:intergenic
CCTGCGTACTTTGTAACTTC+AGG 0.466831 1_3:-21397878 None:intergenic
CATATTCCACTGGCCAACTT+GGG 0.467137 1_3:-21396766 None:intergenic
CAATGGTATTCTGCAGCTTA+CGG 0.467503 1_3:-21397654 None:intergenic
CTTGGAACCACGACCATTGG+TGG 0.467699 1_3:-21399611 None:intergenic
GGTTATTTGCAAACAACCAC+AGG 0.468001 1_3:+21398545 Msa0109420:CDS
AAGCATAAGGCCTACTCAGA+TGG 0.471547 1_3:+21395199 Msa0109420:CDS
CACAAAGGATTATATTCTAC+AGG 0.471721 1_3:+21398146 Msa0109420:CDS
GAGAGAGTGAAAATGGAAGA+AGG 0.472459 1_3:-21392108 None:intergenic
ACAAAGGCTCGGAGAAGGAT+TGG 0.474797 1_3:+21395154 Msa0109420:CDS
AAAGCGTGCTGATGCTCCAC+AGG 0.480601 1_3:+21394943 Msa0109420:CDS
CAAGCCATTGCCAGCACTGA+AGG 0.482797 1_3:+21399663 Msa0109420:CDS
TGGCTTGACACCGCAATCTC+CGG 0.483229 1_3:-21399647 None:intergenic
AACCATACAGCTGCTATTGA+GGG 0.485297 1_3:-21397746 None:intergenic
AAGAGCTAACTTGCATCACC+TGG 0.489126 1_3:+21394904 Msa0109420:CDS
CCTTATGCTTATATCTAGCT+AGG 0.489912 1_3:-21392158 None:intergenic
AATTCTAGCCAAATACATCT+AGG 0.491132 1_3:-21399923 None:intergenic
CTTAATCTTAAACTCTCTCC+AGG 0.491946 1_3:-21394632 None:intergenic
ATGGAATGACTGTTAGCCGC+TGG 0.493879 1_3:+21396929 Msa0109420:CDS
ACAAACTCCACCACCGGAAG+AGG 0.494822 1_3:-21395351 None:intergenic
TTGCTCTTCACAACAGTACA+AGG 0.495834 1_3:-21393643 None:intergenic
TAAGATCACTAAGCAATACT+TGG 0.496194 1_3:+21397486 Msa0109420:CDS
TGTAACTTCAGGCCAATCTT+GGG 0.498617 1_3:-21397867 None:intergenic
TGTCTTGGAACCACGACCAT+TGG 0.498680 1_3:-21399614 None:intergenic
GAAAGCAAACTATTTACCTA+TGG 0.499300 1_3:+21396192 Msa0109420:CDS
TTAAACTCTCTCCAGGAAAA+GGG 0.500283 1_3:-21394625 None:intergenic
GCTAAATGTGCGTAATATGC+TGG 0.501884 1_3:-21399538 None:intergenic
CGTATTTGTGAGACTGACCT+TGG 0.504461 1_3:+21397427 Msa0109420:CDS
AGGTTGTAGCGTCCCAAGAT+TGG 0.504570 1_3:+21397855 Msa0109420:intron
CAGCGAGAAGTTAGCTTCGG+TGG 0.504647 1_3:+21396586 Msa0109420:CDS
TACAAGATCTGTACAAAACT+TGG 0.505071 1_3:+21397936 Msa0109420:CDS
TAGAGAGAGCCATTGTTGTC+GGG 0.508943 1_3:-21397264 None:intergenic
ACTCTAAATCAGTTTGTCAA+TGG 0.511332 1_3:+21399719 Msa0109420:three_prime_UTR
TCTGCGCCAAATATTATTGT+CGG 0.512055 1_3:-21397689 None:intergenic
AGAGAGTGAAAATGGAAGAA+GGG 0.513170 1_3:-21392107 None:intergenic
CTAGCTAGATATAAGCATAA+GGG 0.513549 1_3:+21392159 Msa0109420:five_prime_UTR
AGCTTAAATATCACGAGAGT+GGG 0.515869 1_3:+21396724 Msa0109420:intron
TTTGTTGGTTTCATTTAGAA+GGG 0.515945 1_3:+21398108 Msa0109420:CDS
GTACCAGCTTGTCCATAACC+TGG 0.516015 1_3:-21393763 None:intergenic
CACCTTCCTTGCCTTCAAGT+TGG 0.519394 1_3:+21396157 Msa0109420:CDS
CACCAACTTGAAGGCAAGGA+AGG 0.519412 1_3:-21396159 None:intergenic
AGCTCATTATCATGTTCTAT+GGG 0.519770 1_3:+21399147 Msa0109420:CDS
CAAAGAGTGGTGGAAGAAGA+AGG 0.521620 1_3:+21393563 Msa0109420:CDS
CCAACTCGTAGAGTAGAACT+TGG 0.522353 1_3:-21398349 None:intergenic
GTTGTGAAGAGCAATGAAAA+TGG 0.524728 1_3:+21393652 Msa0109420:CDS
AAAGCTGTTCAGAATGGTAA+AGG 0.524942 1_3:+21393487 Msa0109420:CDS
GGCCTCTAGAACGTTAATCA+TGG 0.524976 1_3:-21399888 None:intergenic
ATAGAGAGAGCCATTGTTGT+CGG 0.525264 1_3:-21397265 None:intergenic
ACTTGGCACGACCCTGTTCG+TGG 0.525797 1_3:+21397953 Msa0109420:CDS
CCAAGTTCTACTCTACGAGT+TGG 0.526282 1_3:+21398349 Msa0109420:CDS
TGAGTAATATACCGATATTG+AGG 0.527056 1_3:-21395229 None:intergenic
CTTTGCAGAATTACCAGACA+AGG 0.529084 1_3:+21393813 Msa0109420:CDS
CAGGAGACTGGTTCCACCAA+TGG 0.529334 1_3:+21399598 Msa0109420:CDS
GAAAACAACTTCACAGCGGA+TGG 0.531130 1_3:+21399172 Msa0109420:CDS
AGATGGAAAATATAGGTAAG+AGG 0.531494 1_3:-21393192 None:intergenic
GAATAAAATGACCTCCCAAT+GGG 0.533591 1_3:-21395113 None:intergenic
CGGAGTGGAAATATACTGCC+TGG 0.534003 1_3:+21398586 Msa0109420:CDS
TTCCGGCTAGAAATTGTCCC+AGG 0.535954 1_3:-21394922 None:intergenic
AGCATAAGGCCTACTCAGAT+GGG 0.536658 1_3:+21395200 Msa0109420:CDS
AGTCAGCGAGAAGTTAGCTT+CGG 0.536960 1_3:+21396583 Msa0109420:CDS
AGATACGGAGCGTGTACACC+TGG 0.537883 1_3:-21399233 None:intergenic
GAGCCAGACCTTCAGGAGAC+TGG 0.537890 1_3:+21399586 Msa0109420:CDS
GATTAAGCTTATCGAAGAAG+AGG 0.538778 1_3:+21394648 Msa0109420:CDS
GGAGTGGTGAAGATGAAGAA+AGG 0.538965 1_3:-21392045 None:intergenic
CCTGTTCGTGGTGTAGTTAG+TGG 0.539215 1_3:+21397965 Msa0109420:CDS
TGAGAATACATAAACAAAGA+TGG 0.539320 1_3:-21393209 None:intergenic
ACTGGTTCCACCAATGGTCG+TGG 0.541831 1_3:+21399604 Msa0109420:CDS
TTCAACTTTAACTCCTCTAA+GGG 0.542277 1_3:-21395885 None:intergenic
GAGTAATATACCGATATTGA+GGG 0.543357 1_3:-21395228 None:intergenic
GACTCTTCAACATAGTTGCA+AGG 0.543811 1_3:+21399850 Msa0109420:three_prime_UTR
TAGTTAGTGGTGGCATGATA+CGG 0.544283 1_3:+21397978 Msa0109420:CDS
AAGTGAATTACCCAAGGAGC+GGG 0.548164 1_3:-21396623 None:intergenic
ACAGTACAAGGTCCACAACT+TGG 0.548308 1_3:-21393631 None:intergenic
CCTTGTTCATCATATTCCAC+TGG 0.549298 1_3:-21396776 None:intergenic
TGGAATGACTGTTAGCCGCT+GGG 0.551893 1_3:+21396930 Msa0109420:CDS
ATGAGGCTTCCAGCATATGA+TGG 0.554712 1_3:+21394571 Msa0109420:CDS
GTTACTAAAGCTGTTCAGAA+TGG 0.556728 1_3:+21393481 Msa0109420:CDS
ATATACCGATATTGAGGGAA+AGG 0.560396 1_3:-21395223 None:intergenic
CGTAAGCTGCAGAATACCAT+TGG 0.564594 1_3:+21397655 Msa0109420:CDS
ATCTCTGTTATACATATGCC+AGG 0.565091 1_3:+21399215 Msa0109420:CDS
ACGCGTGCAGCCGGAGATTG+CGG 0.566034 1_3:+21399637 Msa0109420:CDS
CATAGAACATGATAATGAGC+TGG 0.566071 1_3:-21399145 None:intergenic
AATATTGCAATGCATGATGA+TGG 0.568254 1_3:-21399793 None:intergenic
ACATCTAGGAATCCTAAACT+AGG 0.570513 1_3:-21399909 None:intergenic
AGACCAGGTTATGGACAAGC+TGG 0.571576 1_3:+21393760 Msa0109420:CDS
CATAGTCGAGTTCTCGTCAA+CGG 0.571580 1_3:-21396080 None:intergenic
CTGGTAATTCTGCAAAGAAG+TGG 0.572218 1_3:-21393807 None:intergenic
AGAATTTGTATTGCCTCCTG+TGG 0.575310 1_3:-21394959 None:intergenic
TGAAGAAAGGAAAATGATGA+TGG 0.576755 1_3:-21392032 None:intergenic
TGTTGGTTGAGAAGTTATGC+CGG 0.579047 1_3:-21395948 None:intergenic
CACCTGGGACAATTTCTAGC+CGG 0.580722 1_3:+21394920 Msa0109420:CDS
GCACCACAAAGGCTCGGAGA+AGG 0.581750 1_3:+21395149 Msa0109420:CDS
CTCAAAGACTTGCTTGAAGT+AGG 0.582157 1_3:-21393727 None:intergenic
AGCAAACTATTTACCTATGG+AGG 0.584642 1_3:+21396195 Msa0109420:CDS
GTTGATGAGGTTTGATCACA+AGG 0.584905 1_3:-21393432 None:intergenic
CAGCTTAAATATCACGAGAG+TGG 0.585849 1_3:+21396723 Msa0109420:intron
TTTCCACCAACTTGAAGGCA+AGG 0.586933 1_3:-21396163 None:intergenic
ATTTCGAGCACGTTTCTACA+CGG 0.587479 1_3:+21399564 Msa0109420:CDS
TGAGAGAGCTAGCGTCGAAG+AGG 0.588674 1_3:+21394993 Msa0109420:CDS
CGAGTTGGATGCGATTCGGA+AGG 0.589810 1_3:+21398364 Msa0109420:CDS
TCGGAGAAGGATTGGAGTCG+TGG 0.590182 1_3:+21395162 Msa0109420:CDS
CTACAATGCGAAACCCGAGC+AGG 0.591217 1_3:+21397158 Msa0109420:CDS
TGGTGGAACCAGTCTCCTGA+AGG 0.592084 1_3:-21399594 None:intergenic
TATATATATTCACCAATCAA+AGG 0.592455 1_3:-21393322 None:intergenic
AATAGGCTTACCAACAGATA+CGG 0.593549 1_3:-21399248 None:intergenic
CAATGCGAAACCCGAGCAGG+TGG 0.596367 1_3:+21397161 Msa0109420:CDS
CAGGCCTGTAAAATTGTCGA+GGG 0.596773 1_3:+21396300 Msa0109420:intron
ATCCATGATTAACGTTCTAG+AGG 0.599567 1_3:+21399886 Msa0109420:three_prime_UTR
AGGGAAAGGCCCATCTGAGT+AGG 0.599883 1_3:-21395209 None:intergenic
GTCAATGGTAGATGCATGGA+TGG 0.601605 1_3:+21399734 Msa0109420:three_prime_UTR
GTCGGTATGTCACTAACCAA+TGG 0.601809 1_3:-21397671 None:intergenic
TGAATAAAATGACCTCCCAA+TGG 0.603545 1_3:-21395114 None:intergenic
GTTTACCCCAAGTTGGCCAG+TGG 0.605259 1_3:+21396760 Msa0109420:CDS
AAGCTTATCGAAGAAGAGGA+TGG 0.607629 1_3:+21394652 Msa0109420:CDS
GTCTTATTGATGCAGATGGG+GGG 0.607672 1_3:+21397608 Msa0109420:intron
ATATTCCACTGGCCAACTTG+GGG 0.612784 1_3:-21396765 None:intergenic
TACAGGGATGGTGTAAGTGA+AGG 0.613140 1_3:+21398317 Msa0109420:intron
TGGCCAACAAACTCCACCAC+CGG 0.614973 1_3:-21395357 None:intergenic
ATGCTGGAAGCCTCATGCCA+AGG 0.616463 1_3:-21394564 None:intergenic
GAAGGATTGGAGTCGTGGTG+TGG 0.616810 1_3:+21395167 Msa0109420:CDS
CTATCATAGCAGAACTTGTG+AGG 0.618943 1_3:+21394524 Msa0109420:CDS
AAGGTGATGAAATGATCCAT+TGG 0.621360 1_3:+21400178 Msa0109420:three_prime_UTR
ATTAGAGCACCACAAAGGCT+CGG 0.621503 1_3:+21395143 Msa0109420:CDS
CAACAGGACAGAAGCCACAA+AGG 0.621907 1_3:+21398131 Msa0109420:CDS
TGATCAAGATCCTTATGCAA+AGG 0.622509 1_3:+21396547 Msa0109420:CDS
GTTTGTCAATGGTAGATGCA+TGG 0.623272 1_3:+21399730 Msa0109420:three_prime_UTR
TTTCATTGAACCTCTTCCGG+TGG 0.625099 1_3:+21395341 Msa0109420:CDS
CTGTACAAAGAATCTGACCT+TGG 0.625274 1_3:+21394547 Msa0109420:CDS
TAGATGCATGGATGGTAGCA+TGG 0.630168 1_3:+21399742 Msa0109420:three_prime_UTR
GCGTGCTGATGCTCCACAGG+AGG 0.633278 1_3:+21394946 Msa0109420:CDS
GGGATAGAAACAGTACTGAT+CGG 0.633319 1_3:+21398566 Msa0109420:CDS
TGTTACACACCCTGAAAATG+GGG 0.633876 1_3:+21397712 Msa0109420:CDS
TCAGGCCTGTAAAATTGTCG+AGG 0.634653 1_3:+21396299 Msa0109420:intron
CCACCTCAAGCAAAGAGTGG+TGG 0.634927 1_3:+21393553 Msa0109420:CDS
GTGTCGTCAAACAAAACCAA+AGG 0.636795 1_3:+21397210 Msa0109420:CDS
AAGAATCTGACCTTGGCATG+AGG 0.638870 1_3:+21394554 Msa0109420:CDS
TGTACACGCTCCGTATCTGT+TGG 0.639969 1_3:+21399238 Msa0109420:CDS
GTTGATCTTCAGAGACACAT+TGG 0.639973 1_3:-21397509 None:intergenic
ATGTACAAGTAACTATTAGA+GGG 0.640168 1_3:-21399823 None:intergenic
CACTAACTACACCACGAACA+GGG 0.642395 1_3:-21397964 None:intergenic
ACCATACAGCTGCTATTGAG+GGG 0.643031 1_3:-21397745 None:intergenic
GTGATATTACCCGACAACAA+TGG 0.643356 1_3:+21397255 Msa0109420:CDS
AAGTTGAAGTAACACACAGA+GGG 0.644806 1_3:+21395900 Msa0109420:CDS
AGAGCTAACTTGCATCACCT+GGG 0.645742 1_3:+21394905 Msa0109420:CDS
CAGTACTGTTTCTATCCCTG+TGG 0.647239 1_3:-21398561 None:intergenic
CCTGAAGTTACAAAGTACGC+AGG 0.650949 1_3:+21397878 Msa0109420:CDS
TCTTGTGACATGACTAATGG+TGG 0.653123 1_3:-21393511 None:intergenic
GAACATGATAATGAGCTGGA+CGG 0.656812 1_3:-21399141 None:intergenic
AATGTGTCAAGTCTCTGGCA+TGG 0.665342 1_3:+21397020 Msa0109420:CDS
CCAGTGGAATATGATGAACA+AGG 0.670252 1_3:+21396776 Msa0109420:CDS
GAAGTGAATTACCCAAGGAG+CGG 0.671308 1_3:-21396624 None:intergenic
GTTCGTGGTGTAGTTAGTGG+TGG 0.673702 1_3:+21397968 Msa0109420:CDS
AACATTGAGAAATTAAACCA+AGG 0.677480 1_3:-21397444 None:intergenic
CTGATATTAGAGCACCACAA+AGG 0.679525 1_3:+21395138 Msa0109420:CDS
TCACCACCTCAAGCAAAGAG+TGG 0.680628 1_3:+21393550 Msa0109420:CDS
AGAAACAGTACTGATCGGAG+TGG 0.697622 1_3:+21398571 Msa0109420:CDS
AAAGTTGAAGTAACACACAG+AGG 0.702412 1_3:+21395899 Msa0109420:CDS
GTTATTTGCAAACAACCACA+GGG 0.705760 1_3:+21398546 Msa0109420:CDS
GAACTCGACTATGAAATCAG+TGG 0.723462 1_3:+21396090 Msa0109420:CDS
ACAACTATGAAAGTTACTGG+AGG 0.724424 1_3:-21398502 None:intergenic
AAGGGAAAGAGAATACAAAG+TGG 0.725711 1_3:+21394865 Msa0109420:CDS
AGGCCTGTAAAATTGTCGAG+GGG 0.726466 1_3:+21396301 Msa0109420:intron
AAATGTGCGTAATATGCTGG+AGG 0.729421 1_3:-21399535 None:intergenic
GGATGAAAACAACTTCACAG+CGG 0.806657 1_3:+21399168 Msa0109420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATATATATTTTTTTTT+TGG + chr1_3:21392318-21392337 Msa0109420:intron 0.0%
!!! AAAAAAAAATTTTTTTTTTT+AGG - chr1_3:21392743-21392762 None:intergenic 0.0%
!! AAAACATTAAAATAAACATT+GGG - chr1_3:21392560-21392579 None:intergenic 10.0%
!! AAAAACATTAAAATAAACAT+TGG - chr1_3:21392561-21392580 None:intergenic 10.0%
!!! TTATTTTAATGTTTTTTATG+TGG + chr1_3:21392565-21392584 Msa0109420:intron 10.0%
!! TAATACATAAAAGATAAAAA+TGG - chr1_3:21393107-21393126 None:intergenic 10.0%
!!! TTAATCACAATTTAAATTTT+TGG - chr1_3:21394219-21394238 None:intergenic 10.0%
!! AAAAAACAAGGAAAAAATAA+AGG - chr1_3:21391864-21391883 None:intergenic 15.0%
!! TCATGTAATAATAACTATAT+AGG + chr1_3:21392228-21392247 Msa0109420:five_prime_UTR 15.0%
!!! TTTTATGTTTGTCTTATTTT+TGG + chr1_3:21392766-21392785 Msa0109420:intron 15.0%
!!! ATTTTCATAGAAAATGATTT+AGG - chr1_3:21395258-21395277 None:intergenic 15.0%
!! TATGATTGATAAAAAATGAA+TGG + chr1_3:21398184-21398203 Msa0109420:intron 15.0%
!! GAGATTTATTATTCTAAATT+TGG + chr1_3:21398214-21398233 Msa0109420:intron 15.0%
!!! TAATGTTCTAAATATTGTTT+TGG + chr1_3:21399426-21399445 Msa0109420:intron 15.0%
!! GGAAAAAATAAAGGAAAAAT+GGG - chr1_3:21391855-21391874 None:intergenic 20.0%
!! AGGAAAAAATAAAGGAAAAA+TGG - chr1_3:21391856-21391875 None:intergenic 20.0%
!! AGAGAAAGAAAAAAAAAACA+AGG - chr1_3:21391876-21391895 None:intergenic 20.0%
!! GTAATAATAACTATATAGGT+AGG + chr1_3:21392232-21392251 Msa0109420:intron 20.0%
!! AAAGGAATAAACATTGAAAA+GGG - chr1_3:21392449-21392468 None:intergenic 20.0%
!! TAAAGGAATAAACATTGAAA+AGG - chr1_3:21392450-21392469 None:intergenic 20.0%
!!! TCTTGATTTTTGTTTTTTTG+TGG + chr1_3:21392485-21392504 Msa0109420:intron 20.0%
!!! GTTTATTGATTTTCATTCTT+TGG + chr1_3:21392595-21392614 Msa0109420:intron 20.0%
!! AATGTGATTAAGAGAAAAAT+GGG - chr1_3:21392681-21392700 None:intergenic 20.0%
!! AAATGTGATTAAGAGAAAAA+TGG - chr1_3:21392682-21392701 None:intergenic 20.0%
!! CATAAAAGATAAAAATGGTA+TGG - chr1_3:21393102-21393121 None:intergenic 20.0%
!! TAAACAAAGATGGAAAATAT+AGG - chr1_3:21393202-21393221 None:intergenic 20.0%
!! TATATATATTCACCAATCAA+AGG - chr1_3:21393325-21393344 None:intergenic 20.0%
!! TTTGCAAAAACAATATAGTT+TGG + chr1_3:21393895-21393914 Msa0109420:intron 20.0%
!! AACTTAAATACTTCCATAAA+AGG - chr1_3:21393946-21393965 None:intergenic 20.0%
!! AAACTATAAGAGGAAATTAA+GGG - chr1_3:21393972-21393991 None:intergenic 20.0%
!! TAATTCAAATAGATGGTTAT+TGG - chr1_3:21394344-21394363 None:intergenic 20.0%
!!! AATTAAGACAACTTTTTAAG+TGG - chr1_3:21394373-21394392 None:intergenic 20.0%
!! CTTAAAAAGTTGTCTTAATT+TGG + chr1_3:21394373-21394392 Msa0109420:intron 20.0%
!! ATATGCAATAAATCTTACTT+GGG - chr1_3:21394688-21394707 None:intergenic 20.0%
!! AATAATGCAATACTTTCATT+TGG + chr1_3:21394738-21394757 Msa0109420:intron 20.0%
!!! AATACTAATCATTTTTCAGA+AGG + chr1_3:21394846-21394865 Msa0109420:intron 20.0%
!!! ATACTAATCATTTTTCAGAA+GGG + chr1_3:21394847-21394866 Msa0109420:intron 20.0%
!! TTGTAAATTTAAACCATGTT+TGG - chr1_3:21395749-21395768 None:intergenic 20.0%
!!! TAAGTTCAATAAAGTTCTAA+TGG + chr1_3:21396027-21396046 Msa0109420:intron 20.0%
!! AGAAAAATAGATTGTACATT+AGG - chr1_3:21396663-21396682 None:intergenic 20.0%
!!! TGTATTTTTTTTATTGCTGT+AGG + chr1_3:21397107-21397126 Msa0109420:intron 20.0%
!!! TGTATAAATCTTTTGTTTTC+AGG + chr1_3:21397394-21397413 Msa0109420:intron 20.0%
!! AAACAGGACAAAATTTAAAA+TGG - chr1_3:21398079-21398098 None:intergenic 20.0%
!!! AATTGATATGTTGTTTATGA+AGG + chr1_3:21398450-21398469 Msa0109420:intron 20.0%
!! TTTTCTTTATCACGTGTAAA+AGG - chr1_3:21391973-21391992 None:intergenic 25.0%
! ATGAGCAATGAAAGAAAAAT+GGG - chr1_3:21392084-21392103 None:intergenic 25.0%
! AATGAGCAATGAAAGAAAAA+TGG - chr1_3:21392085-21392104 None:intergenic 25.0%
! CAATGTTTATTCCTTTACTT+AGG + chr1_3:21392453-21392472 Msa0109420:intron 25.0%
!!! TGTTTTATTCTCTTCAAACT+TGG + chr1_3:21392509-21392528 Msa0109420:intron 25.0%
!!! ATTGATTTTCATTCTTTGGT+AGG + chr1_3:21392599-21392618 Msa0109420:intron 25.0%
!! TTGATTTTCATTCTTTGGTA+GGG + chr1_3:21392600-21392619 Msa0109420:intron 25.0%
! AAATTTGAACCTCAAAATCA+TGG - chr1_3:21392823-21392842 None:intergenic 25.0%
!! TGTTTGAAACTTCAATCAAA+AGG + chr1_3:21392872-21392891 Msa0109420:intron 25.0%
!! GTTTGAAACTTCAATCAAAA+GGG + chr1_3:21392873-21392892 Msa0109420:intron 25.0%
!! TGGATTTTCAGTTTTTACAA+AGG + chr1_3:21393020-21393039 Msa0109420:intron 25.0%
! TGAGAATACATAAACAAAGA+TGG - chr1_3:21393212-21393231 None:intergenic 25.0%
!! TTTCACTATTTTGCAGTTAT+AGG + chr1_3:21393243-21393262 Msa0109420:five_prime_UTR 25.0%
! AAAAACTAAACGTGAAAAAC+TGG + chr1_3:21393267-21393286 Msa0109420:five_prime_UTR 25.0%
! AAAATTTCAACATGCCTTTA+AGG + chr1_3:21393383-21393402 Msa0109420:exon 25.0%
! CAAACTATAAGAGGAAATTA+AGG - chr1_3:21393973-21393992 None:intergenic 25.0%
! CTTAATTTCCTCTTATAGTT+TGG + chr1_3:21393971-21393990 Msa0109420:intron 25.0%
! ATTGCAGAATGAAATAAATG+AGG + chr1_3:21393998-21394017 Msa0109420:intron 25.0%
!! TGTGATTAACCATAATTTTC+TGG + chr1_3:21394230-21394249 Msa0109420:intron 25.0%
! ATTTGAACACCAGAAAATTA+TGG - chr1_3:21394242-21394261 None:intergenic 25.0%
!! AGTTGAACTTCTGAAAATTA+TGG + chr1_3:21394270-21394289 Msa0109420:intron 25.0%
! AAACTCGTTAATCACAAATT+TGG - chr1_3:21394306-21394325 None:intergenic 25.0%
! GTTCAAAAATCATTTCACAA+AGG + chr1_3:21394398-21394417 Msa0109420:intron 25.0%
!! AGATAATGGTATTAAAGCAA+AGG - chr1_3:21394444-21394463 None:intergenic 25.0%
! CATATGCAATAAATCTTACT+TGG - chr1_3:21394689-21394708 None:intergenic 25.0%
! GTATCAGTTTAAACTTAACT+TGG - chr1_3:21394825-21394844 None:intergenic 25.0%
! TGAAAAGTTTCATTTCCTAA+AGG + chr1_3:21395084-21395103 Msa0109420:intron 25.0%
!! TTTAAACCATGTTTGGAATT+TGG - chr1_3:21395742-21395761 None:intergenic 25.0%
!! ATCGAGAAAATGACATTTTA+CGG + chr1_3:21396397-21396416 Msa0109420:CDS 25.0%
!! TGTACATTAGGCATATATTT+TGG - chr1_3:21396651-21396670 None:intergenic 25.0%
! TTCAAACACAAGAAATAGAA+AGG - chr1_3:21397057-21397076 None:intergenic 25.0%
! AACATTGAGAAATTAAACCA+AGG - chr1_3:21397447-21397466 None:intergenic 25.0%
!! TTTTTCTTCTGATATTGCAA+TGG + chr1_3:21397790-21397809 Msa0109420:intron 25.0%
! ATATCTATTGCCGAATTTAT+AGG + chr1_3:21397835-21397854 Msa0109420:intron 25.0%
! AAAAATGAGGATTACAAAAG+AGG - chr1_3:21398022-21398041 None:intergenic 25.0%
!!! ATTTGTTGGTTTCATTTAGA+AGG + chr1_3:21398107-21398126 Msa0109420:CDS 25.0%
!!! TTTGTTGGTTTCATTTAGAA+GGG + chr1_3:21398108-21398127 Msa0109420:CDS 25.0%
!! ATTCTAAATTTGGTAACAGA+CGG + chr1_3:21398224-21398243 Msa0109420:intron 25.0%
!! CATCATTTAGATATTTTCCT+CGG - chr1_3:21398277-21398296 None:intergenic 25.0%
! TCTAAATGATGAGATCTAAT+TGG + chr1_3:21398286-21398305 Msa0109420:intron 25.0%
! AGATAAAAATCAAACTCTGT+TGG - chr1_3:21398755-21398774 None:intergenic 25.0%
! AAACAAAACTAATGAGGAAA+AGG - chr1_3:21398819-21398838 None:intergenic 25.0%
! ATCAGTAAACAAAACTAATG+AGG - chr1_3:21398825-21398844 None:intergenic 25.0%
! TACCAACACATTATCAAAAT+AGG - chr1_3:21399268-21399287 None:intergenic 25.0%
! TCATGTATCTGATACATATT+TGG - chr1_3:21399326-21399345 None:intergenic 25.0%
! ATGTACAAGTAACTATTAGA+GGG - chr1_3:21399826-21399845 None:intergenic 25.0%
! AATGTACAAGTAACTATTAG+AGG - chr1_3:21399827-21399846 None:intergenic 25.0%
!!! ATTAGGTTTTAGACTTTAGA+CGG + chr1_3:21399960-21399979 Msa0109420:three_prime_UTR 25.0%
! GTAGAATTTATTTGCTTGTA+TGG + chr1_3:21400031-21400050 Msa0109420:three_prime_UTR 25.0%
TGAAGAAAGGAAAATGATGA+TGG - chr1_3:21392035-21392054 None:intergenic 30.0%
TGAGCAATGAAAGAAAAATG+GGG - chr1_3:21392083-21392102 None:intergenic 30.0%
CTAGCTAGATATAAGCATAA+GGG + chr1_3:21392159-21392178 Msa0109420:five_prime_UTR 30.0%
! TTGACTTTGTTTACACTTCA+AGG + chr1_3:21392289-21392308 Msa0109420:intron 30.0%
GAACAAAACATCCTAAGTAA+AGG - chr1_3:21392467-21392486 None:intergenic 30.0%
! TGATTTTCATTCTTTGGTAG+GGG + chr1_3:21392601-21392620 Msa0109420:intron 30.0%
! TACTAAAAGCCATGATTTTG+AGG + chr1_3:21392811-21392830 Msa0109420:intron 30.0%
!!! AATGAGATTTCCTTGTTTTC+TGG + chr1_3:21392845-21392864 Msa0109420:intron 30.0%
! GTCTTCTTTAGTTAGTTTCA+TGG + chr1_3:21392938-21392957 Msa0109420:intron 30.0%
! TTCAACTTCCATCACTATTT+TGG + chr1_3:21392967-21392986 Msa0109420:intron 30.0%
! TCAACTTCCATCACTATTTT+GGG + chr1_3:21392968-21392987 Msa0109420:intron 30.0%
! CTGAAAAAATGGTAACTTGT+TGG + chr1_3:21393000-21393019 Msa0109420:intron 30.0%
AGATGGAAAATATAGGTAAG+AGG - chr1_3:21393195-21393214 None:intergenic 30.0%
! AATTTTTCTGAGTTCTTTGC+AGG - chr1_3:21393369-21393388 None:intergenic 30.0%
! TGTTTCCATTTTCAACAACA+TGG - chr1_3:21393678-21393697 None:intergenic 30.0%
CAAAGAAGCTTACATCATAT+TGG - chr1_3:21393846-21393865 None:intergenic 30.0%
CAATTCAACCAAACTATAAG+AGG - chr1_3:21393982-21394001 None:intergenic 30.0%
GTTGTTAACACGATTCATAT+AGG + chr1_3:21394137-21394156 Msa0109420:intron 30.0%
GTATATCAATAACCATCTAC+CGG - chr1_3:21394176-21394195 None:intergenic 30.0%
TAGATGGTTATTGATATACC+AGG + chr1_3:21394177-21394196 Msa0109420:intron 30.0%
!! AATTTTCTGGTGTTCAAATC+TGG + chr1_3:21394243-21394262 Msa0109420:intron 30.0%
GTTAATCACAAATTTGGATG+TGG - chr1_3:21394300-21394319 None:intergenic 30.0%
TAGATGGTTATTGGATACAT+CGG - chr1_3:21394335-21394354 None:intergenic 30.0%
GTTGTCGTAATTCAAATAGA+TGG - chr1_3:21394351-21394370 None:intergenic 30.0%
CGAAATACAGAAACAGATAA+TGG - chr1_3:21394458-21394477 None:intergenic 30.0%
GAGTAATATACCGATATTGA+GGG - chr1_3:21395231-21395250 None:intergenic 30.0%
TGAGTAATATACCGATATTG+AGG - chr1_3:21395232-21395251 None:intergenic 30.0%
TTTGTCGTATTCCATAGATA+TGG + chr1_3:21395308-21395327 Msa0109420:intron 30.0%
! GTACTTGATTTTGTGAACAA+GGG + chr1_3:21395435-21395454 Msa0109420:intron 30.0%
GTTTATCCAAATTCCAAACA+TGG + chr1_3:21395733-21395752 Msa0109420:intron 30.0%
TTCAACTTTAACTCCTCTAA+GGG - chr1_3:21395888-21395907 None:intergenic 30.0%
! TCCACTAATGTATCTCTTTT+AGG + chr1_3:21396053-21396072 Msa0109420:intron 30.0%
ACCTAAAAGAGATACATTAG+TGG - chr1_3:21396057-21396076 None:intergenic 30.0%
GAATACTTCCAAGAAATGTA+TGG + chr1_3:21396115-21396134 Msa0109420:CDS 30.0%
TAGTGAAACCATACATTTCT+TGG - chr1_3:21396126-21396145 None:intergenic 30.0%
GAAAGCAAACTATTTACCTA+TGG + chr1_3:21396192-21396211 Msa0109420:CDS 30.0%
AAAAATTTCACTACCTCCAT+AGG - chr1_3:21396211-21396230 None:intergenic 30.0%
! AGGTAGTGAAATTTTTCATG+CGG + chr1_3:21396215-21396234 Msa0109420:intron 30.0%
TGATTATTCTTACATGTCTC+TGG + chr1_3:21396272-21396291 Msa0109420:intron 30.0%
! TCGAGAAAATGACATTTTAC+GGG + chr1_3:21396398-21396417 Msa0109420:CDS 30.0%
! GACATTTTACGGGTAATTAT+CGG + chr1_3:21396408-21396427 Msa0109420:intron 30.0%
ATCCTTATGCAAAGGAATTT+GGG + chr1_3:21396555-21396574 Msa0109420:CDS 30.0%
AAAAATTGTTTACCCCAAGT+TGG + chr1_3:21396753-21396772 Msa0109420:CDS 30.0%
AAAGCCATCACATAAAAACT+GGG - chr1_3:21396858-21396877 None:intergenic 30.0%
AAAAGCCATCACATAAAAAC+TGG - chr1_3:21396859-21396878 None:intergenic 30.0%
ACCATGCAGAAAATGATTAA+TGG + chr1_3:21396910-21396929 Msa0109420:intron 30.0%
! TCCATTAATCATTTTCTGCA+TGG - chr1_3:21396914-21396933 None:intergenic 30.0%
ACACAAGAAATAGAAAGGAT+GGG - chr1_3:21397052-21397071 None:intergenic 30.0%
AACACAAGAAATAGAAAGGA+TGG - chr1_3:21397053-21397072 None:intergenic 30.0%
ATGCAGCAAAAAATTTACAC+TGG + chr1_3:21397077-21397096 Msa0109420:intron 30.0%
CAAAACCAAAGGAAAAGAAT+TGG + chr1_3:21397221-21397240 Msa0109420:CDS 30.0%
TAAGATCACTAAGCAATACT+TGG + chr1_3:21397486-21397505 Msa0109420:CDS 30.0%
ATGATCACTAACTACTTGAT+CGG - chr1_3:21397583-21397602 None:intergenic 30.0%
GACATACCGACAATAATATT+TGG + chr1_3:21397683-21397702 Msa0109420:CDS 30.0%
TGATATTGCAATGGTTATGA+AGG + chr1_3:21397799-21397818 Msa0109420:intron 30.0%
GATATTGCAATGGTTATGAA+GGG + chr1_3:21397800-21397819 Msa0109420:intron 30.0%
TGTATAAGTTCTTGTCTTTG+CGG - chr1_3:21397920-21397939 None:intergenic 30.0%
TACAAGATCTGTACAAAACT+TGG + chr1_3:21397936-21397955 Msa0109420:CDS 30.0%
!!! TAATCCTCATTTTTTGCTCT+TGG + chr1_3:21398028-21398047 Msa0109420:intron 30.0%
CTGTAGAATATAATCCTTTG+TGG - chr1_3:21398148-21398167 None:intergenic 30.0%
CACAAAGGATTATATTCTAC+AGG + chr1_3:21398146-21398165 Msa0109420:CDS 30.0%
! TCTAATTGGACATTTTGTAC+AGG + chr1_3:21398300-21398319 Msa0109420:intron 30.0%
! CTAATTGGACATTTTGTACA+GGG + chr1_3:21398301-21398320 Msa0109420:intron 30.0%
TGCAAAAAAGACATCATACT+CGG + chr1_3:21398524-21398543 Msa0109420:CDS 30.0%
TATGTTGAATGTTCTCGAAT+TGG + chr1_3:21398609-21398628 Msa0109420:intron 30.0%
!!! AGAAAACGCTATTTTTTACC+TGG - chr1_3:21398796-21398815 None:intergenic 30.0%
AACCTTTAATCTCTCTAAGT+TGG + chr1_3:21398891-21398910 Msa0109420:intron 30.0%
AGTTGGCCATATAATATGAA+AGG + chr1_3:21398908-21398927 Msa0109420:intron 30.0%
!! GATTGGCCTTTCATATTATA+TGG - chr1_3:21398917-21398936 None:intergenic 30.0%
TTACATTCTATTATCGTGCA+GGG + chr1_3:21399112-21399131 Msa0109420:intron 30.0%
AGCTCATTATCATGTTCTAT+GGG + chr1_3:21399147-21399166 Msa0109420:CDS 30.0%
!!! AGCCTATTTTGATAATGTGT+TGG + chr1_3:21399263-21399282 Msa0109420:intron 30.0%
TTAATTGTACTACTCTGAAC+TGG + chr1_3:21399290-21399309 Msa0109420:intron 30.0%
TAGAAATATGCCTATGGAAT+CGG - chr1_3:21399385-21399404 None:intergenic 30.0%
AGATACTAGAAATATGCCTA+TGG - chr1_3:21399391-21399410 None:intergenic 30.0%
CAACCAAAAGGTTCATTAAA+TGG - chr1_3:21399503-21399522 None:intergenic 30.0%
ACTCTAAATCAGTTTGTCAA+TGG + chr1_3:21399719-21399738 Msa0109420:three_prime_UTR 30.0%
AATATTGCAATGCATGATGA+TGG - chr1_3:21399796-21399815 None:intergenic 30.0%
TTAGGATTCCTAGATGTATT+TGG + chr1_3:21399915-21399934 Msa0109420:three_prime_UTR 30.0%
AATTCTAGCCAAATACATCT+AGG - chr1_3:21399926-21399945 None:intergenic 30.0%
! ATTTTCACTTCCTATTTGCA+AGG + chr1_3:21400074-21400093 Msa0109420:three_prime_UTR 30.0%
AGATTACAATCCTTGCAAAT+AGG - chr1_3:21400087-21400106 None:intergenic 30.0%
TCTGTAAGTGCTTAACATTA+AGG + chr1_3:21400104-21400123 Msa0109420:three_prime_UTR 30.0%
ACAGTTAAGTTTCTGTATGA+AGG + chr1_3:21400159-21400178 Msa0109420:three_prime_UTR 30.0%
!! AAAATGGGGTGTGTTTTGAA+GGG - chr1_3:21392069-21392088 None:intergenic 35.0%
!! AAAAATGGGGTGTGTTTTGA+AGG - chr1_3:21392070-21392089 None:intergenic 35.0%
AGAGAGTGAAAATGGAAGAA+GGG - chr1_3:21392110-21392129 None:intergenic 35.0%
AAGCAATGAGAGAGTGAAAA+TGG - chr1_3:21392118-21392137 None:intergenic 35.0%
CCTTATGCTTATATCTAGCT+AGG - chr1_3:21392161-21392180 None:intergenic 35.0%
CCTAGCTAGATATAAGCATA+AGG + chr1_3:21392158-21392177 Msa0109420:five_prime_UTR 35.0%
AATGGGAAAACCCAGAAAAA+TGG - chr1_3:21392664-21392683 None:intergenic 35.0%
CAAACAACAACCAGAAAACA+AGG - chr1_3:21392858-21392877 None:intergenic 35.0%
AGCAAAACCCAAAATAGTGA+TGG - chr1_3:21392978-21392997 None:intergenic 35.0%
!! GGTTTTGCTTGCTGAAAAAA+TGG + chr1_3:21392989-21393008 Msa0109420:intron 35.0%
TCACTATAGTCACCTTTGAT+TGG + chr1_3:21393310-21393329 Msa0109420:five_prime_UTR 35.0%
CTCTCTTTCATTTGCCTTAA+AGG - chr1_3:21393400-21393419 None:intergenic 35.0%
!! CTCATAGTGTTTTGTTGATG+AGG - chr1_3:21393448-21393467 None:intergenic 35.0%
GTTACTAAAGCTGTTCAGAA+TGG + chr1_3:21393481-21393500 Msa0109420:CDS 35.0%
AAAGCTGTTCAGAATGGTAA+AGG + chr1_3:21393487-21393506 Msa0109420:CDS 35.0%
TGTTCTTGTGACATGACTAA+TGG - chr1_3:21393517-21393536 None:intergenic 35.0%
GTTGTGAAGAGCAATGAAAA+TGG + chr1_3:21393652-21393671 Msa0109420:CDS 35.0%
AATGGCCATGTTGTTGAAAA+TGG + chr1_3:21393670-21393689 Msa0109420:CDS 35.0%
TAAAGCCTTGAGGCAAAATA+AGG - chr1_3:21394065-21394084 None:intergenic 35.0%
ATAACACAACTAAAGCCTTG+AGG - chr1_3:21394075-21394094 None:intergenic 35.0%
GTTAACACGATTCATATAGG+TGG + chr1_3:21394140-21394159 Msa0109420:intron 35.0%
TATAGGTGGTTAATTGTGTC+CGG + chr1_3:21394154-21394173 Msa0109420:intron 35.0%
!! TATCTGTTTCTGTATTTCGC+AGG + chr1_3:21394459-21394478 Msa0109420:intron 35.0%
TGCTATGATAGACCTGTTTA+CGG - chr1_3:21394515-21394534 None:intergenic 35.0%
AGAAAAAGTCTTTACACAGC+AGG + chr1_3:21394595-21394614 Msa0109420:CDS 35.0%
TTAAACTCTCTCCAGGAAAA+GGG - chr1_3:21394628-21394647 None:intergenic 35.0%
CTTAATCTTAAACTCTCTCC+AGG - chr1_3:21394635-21394654 None:intergenic 35.0%
GATTAAGCTTATCGAAGAAG+AGG + chr1_3:21394648-21394667 Msa0109420:CDS 35.0%
GAAGAAGAGGATGGAATTAA+TGG + chr1_3:21394661-21394680 Msa0109420:CDS 35.0%
AAGGGAAAGAGAATACAAAG+TGG + chr1_3:21394865-21394884 Msa0109420:CDS 35.0%
ACGATAATTGCAAGTTTCAG+CGG - chr1_3:21395055-21395074 None:intergenic 35.0%
GAATAAAATGACCTCCCAAT+GGG - chr1_3:21395116-21395135 None:intergenic 35.0%
TGAATAAAATGACCTCCCAA+TGG - chr1_3:21395117-21395136 None:intergenic 35.0%
! GTGGATTTTACCAAAGCATA+AGG + chr1_3:21395186-21395205 Msa0109420:CDS 35.0%
ATATACCGATATTGAGGGAA+AGG - chr1_3:21395226-21395245 None:intergenic 35.0%
CAAAATCAAGTACCTTGATG+CGG - chr1_3:21395428-21395447 None:intergenic 35.0%
! GGTACTTGATTTTGTGAACA+AGG + chr1_3:21395434-21395453 Msa0109420:intron 35.0%
CAGATTAAGAAATCCCTTAG+AGG + chr1_3:21395872-21395891 Msa0109420:intron 35.0%
CTTCAACTTTAACTCCTCTA+AGG - chr1_3:21395889-21395908 None:intergenic 35.0%
AAAGTTGAAGTAACACACAG+AGG + chr1_3:21395899-21395918 Msa0109420:CDS 35.0%
AAGTTGAAGTAACACACAGA+GGG + chr1_3:21395900-21395919 Msa0109420:CDS 35.0%
!! AGAAGAAAGTATCGTGTTTC+CGG + chr1_3:21395929-21395948 Msa0109420:CDS 35.0%
ACTTACACAAGTTCTCTTGT+TGG - chr1_3:21395968-21395987 None:intergenic 35.0%
! TTTGATTTCCACCAACTTGA+AGG - chr1_3:21396171-21396190 None:intergenic 35.0%
AGCAAACTATTTACCTATGG+AGG + chr1_3:21396195-21396214 Msa0109420:CDS 35.0%
TGATCAAGATCCTTATGCAA+AGG + chr1_3:21396547-21396566 Msa0109420:CDS 35.0%
GATCCTTATGCAAAGGAATT+TGG + chr1_3:21396554-21396573 Msa0109420:CDS 35.0%
ATCCCAAATTCCTTTGCATA+AGG - chr1_3:21396560-21396579 None:intergenic 35.0%
AGCTTAAATATCACGAGAGT+GGG + chr1_3:21396724-21396743 Msa0109420:intron 35.0%
TTCCTATGCATCTGTATTTC+TGG + chr1_3:21396825-21396844 Msa0109420:intron 35.0%
AACCAGAAATACAGATGCAT+AGG - chr1_3:21396830-21396849 None:intergenic 35.0%
! TTCACCCAGTTTTTATGTGA+TGG + chr1_3:21396851-21396870 Msa0109420:intron 35.0%
! TATGTGATGGCTTTTAATGC+TGG + chr1_3:21396864-21396883 Msa0109420:intron 35.0%
AAAAATTTATGCATGCCCAG+CGG - chr1_3:21396948-21396967 None:intergenic 35.0%
! GCATGCATAAATTTTTCACG+AGG + chr1_3:21396952-21396971 Msa0109420:CDS 35.0%
ATTGCTGTAGGAGTTTAATC+TGG + chr1_3:21397119-21397138 Msa0109420:intron 35.0%
! AAGCTCCAATTCTTTTCCTT+TGG - chr1_3:21397229-21397248 None:intergenic 35.0%
TCTGCGCCAAATATTATTGT+CGG - chr1_3:21397692-21397711 None:intergenic 35.0%
ATGTTACACACCCTGAAAAT+GGG + chr1_3:21397711-21397730 Msa0109420:CDS 35.0%
GACGCTACAACCTATAAATT+CGG - chr1_3:21397848-21397867 None:intergenic 35.0%
ACAACCAAGAGCAAAAAATG+AGG - chr1_3:21398035-21398054 None:intergenic 35.0%
! AAATTTTGTCCTGTTTGTGC+AGG + chr1_3:21398083-21398102 Msa0109420:intron 35.0%
! AATTTTGTCCTGTTTGTGCA+GGG + chr1_3:21398084-21398103 Msa0109420:intron 35.0%
CAACATTGTCATATACTCAC+TGG - chr1_3:21398252-21398271 None:intergenic 35.0%
GTATGTTGTAGACTTGTAGT+TGG + chr1_3:21398418-21398437 Msa0109420:intron 35.0%
ACAACTATGAAAGTTACTGG+AGG - chr1_3:21398505-21398524 None:intergenic 35.0%
TGCACAACTATGAAAGTTAC+TGG - chr1_3:21398508-21398527 None:intergenic 35.0%
GTTATTTGCAAACAACCACA+GGG + chr1_3:21398546-21398565 Msa0109420:CDS 35.0%
! CGTGCTTTTAATATGCTTTC+AGG + chr1_3:21398701-21398720 Msa0109420:intron 35.0%
! CTCTGTTGGATGACAAATTT+TGG - chr1_3:21398741-21398760 None:intergenic 35.0%
GAAGGAATGCTAAAACAGAT+TGG - chr1_3:21398934-21398953 None:intergenic 35.0%
!!! TCTGTTTTAGCATTCCTTCT+CGG + chr1_3:21398935-21398954 Msa0109420:intron 35.0%
! TTTTACCCTAAAAGAGAGTG+AGG + chr1_3:21398990-21399009 Msa0109420:intron 35.0%
TTTACCCTAAAAGAGAGTGA+GGG + chr1_3:21398991-21399010 Msa0109420:intron 35.0%
TGAGTGCAAAGCAATACTTA+TGG + chr1_3:21399085-21399104 Msa0109420:intron 35.0%
CTTACATTCTATTATCGTGC+AGG + chr1_3:21399111-21399130 Msa0109420:intron 35.0%
! CATAGAACATGATAATGAGC+TGG - chr1_3:21399148-21399167 None:intergenic 35.0%
CAGCTCATTATCATGTTCTA+TGG + chr1_3:21399146-21399165 Msa0109420:CDS 35.0%
ATCTCTGTTATACATATGCC+AGG + chr1_3:21399215-21399234 Msa0109420:CDS 35.0%
AATAGGCTTACCAACAGATA+CGG - chr1_3:21399251-21399270 None:intergenic 35.0%
GTTCATTAAATGGTGCAAGA+TGG - chr1_3:21399493-21399512 None:intergenic 35.0%
! GCACCATTTAATGAACCTTT+TGG + chr1_3:21399497-21399516 Msa0109420:intron 35.0%
ATCCATGATTAACGTTCTAG+AGG + chr1_3:21399886-21399905 Msa0109420:three_prime_UTR 35.0%
ACATCTAGGAATCCTAAACT+AGG - chr1_3:21399912-21399931 None:intergenic 35.0%
! ACTTTAGACGGTATTGAATC+AGG + chr1_3:21399972-21399991 Msa0109420:three_prime_UTR 35.0%
CTTATACACGCATGCAAAAG+AGG - chr1_3:21392004-21392023 None:intergenic 40.0%
GAGAGAGTGAAAATGGAAGA+AGG - chr1_3:21392111-21392130 None:intergenic 40.0%
GAAGAGAAAACCAGCTTCTT+AGG - chr1_3:21392632-21392651 None:intergenic 40.0%
!!! AAGAAGCTGGTTTTCTCTTC+TGG + chr1_3:21392632-21392651 Msa0109420:intron 40.0%
!!! AGAAGCTGGTTTTCTCTTCT+GGG + chr1_3:21392633-21392652 Msa0109420:intron 40.0%
!! TCTGGGTCATTCCATTTTTC+TGG + chr1_3:21392650-21392669 Msa0109420:intron 40.0%
!! CTGGGTCATTCCATTTTTCT+GGG + chr1_3:21392651-21392670 Msa0109420:intron 40.0%
GGAGCGAATGTGTAAAGTAA+AGG - chr1_3:21393081-21393100 None:intergenic 40.0%
! GTTGATGAGGTTTGATCACA+AGG - chr1_3:21393435-21393454 None:intergenic 40.0%
CACTATGAGTCAAGCTAAGA+AGG + chr1_3:21393459-21393478 Msa0109420:CDS 40.0%
TCTTGTGACATGACTAATGG+TGG - chr1_3:21393514-21393533 None:intergenic 40.0%
GGAAGAAGAAGGAGTAGAAA+TGG + chr1_3:21393574-21393593 Msa0109420:CDS 40.0%
!! GTTTTGATGAGACCAAGTTG+TGG + chr1_3:21393619-21393638 Msa0109420:CDS 40.0%
TTGCTCTTCACAACAGTACA+AGG - chr1_3:21393646-21393665 None:intergenic 40.0%
! CTCAAAGACTTGCTTGAAGT+AGG - chr1_3:21393730-21393749 None:intergenic 40.0%
! TTGAGTTTTGCTCAAAGACC+AGG + chr1_3:21393745-21393764 Msa0109420:CDS 40.0%
TTTGCTCAAAGACCAGGTTA+TGG + chr1_3:21393751-21393770 Msa0109420:CDS 40.0%
CTGGTAATTCTGCAAAGAAG+TGG - chr1_3:21393810-21393829 None:intergenic 40.0%
CTTTGCAGAATTACCAGACA+AGG + chr1_3:21393813-21393832 Msa0109420:CDS 40.0%
!! TATTGGTTCAAGTCCTTGTC+TGG - chr1_3:21393829-21393848 None:intergenic 40.0%
! CTCACACAACACACCTTTTA+TGG + chr1_3:21393930-21393949 Msa0109420:intron 40.0%
!!! TGAGTCCTTATTTTGCCTCA+AGG + chr1_3:21394057-21394076 Msa0109420:intron 40.0%
!! GGTTAATGAGTTTTGACACC+TGG - chr1_3:21394198-21394217 None:intergenic 40.0%
TTCGCAGGTAACTATTACTC+CGG + chr1_3:21394474-21394493 Msa0109420:intron 40.0%
CTATCATAGCAGAACTTGTG+AGG + chr1_3:21394524-21394543 Msa0109420:CDS 40.0%
CTGTACAAAGAATCTGACCT+TGG + chr1_3:21394547-21394566 Msa0109420:CDS 40.0%
! CTTTTTCTGCCATCATATGC+TGG - chr1_3:21394583-21394602 None:intergenic 40.0%
CTTAAACTCTCTCCAGGAAA+AGG - chr1_3:21394629-21394648 None:intergenic 40.0%
AAGCTTATCGAAGAAGAGGA+TGG + chr1_3:21394652-21394671 Msa0109420:CDS 40.0%
AGAATTTGTATTGCCTCCTG+TGG - chr1_3:21394962-21394981 None:intergenic 40.0%
!! TCCTAAAGGTTTTGTCCCAT+TGG + chr1_3:21395098-21395117 Msa0109420:intron 40.0%
!! CCTAAAGGTTTTGTCCCATT+GGG + chr1_3:21395099-21395118 Msa0109420:intron 40.0%
CTTTGTGGTGCTCTAATATC+AGG - chr1_3:21395140-21395159 None:intergenic 40.0%
! CTGATATTAGAGCACCACAA+AGG + chr1_3:21395138-21395157 Msa0109420:CDS 40.0%
TGCTTTCATTGAACCTCTTC+CGG + chr1_3:21395338-21395357 Msa0109420:CDS 40.0%
! GCACATCTTTTCCTAATAGC+TGG - chr1_3:21395380-21395399 None:intergenic 40.0%
TAGGAAAAGATGTGCTGTCA+AGG + chr1_3:21395385-21395404 Msa0109420:intron 40.0%
TCAGATAAACCAAGTCAAGC+AGG - chr1_3:21395461-21395480 None:intergenic 40.0%
! TGTTGGTTGAGAAGTTATGC+CGG - chr1_3:21395951-21395970 None:intergenic 40.0%
GAACTCGACTATGAAATCAG+TGG + chr1_3:21396090-21396109 Msa0109420:CDS 40.0%
AGGGGCAACGATATACTAAA+AGG + chr1_3:21396319-21396338 Msa0109420:CDS 40.0%
!!! ATGTCATTTTCTCGATCACG+AGG - chr1_3:21396393-21396412 None:intergenic 40.0%
TTGGAGAAGTGAATTACCCA+AGG - chr1_3:21396632-21396651 None:intergenic 40.0%
CAGCTTAAATATCACGAGAG+TGG + chr1_3:21396723-21396742 Msa0109420:intron 40.0%
CCTTGTTCATCATATTCCAC+TGG - chr1_3:21396779-21396798 None:intergenic 40.0%
CCAGTGGAATATGATGAACA+AGG + chr1_3:21396776-21396795 Msa0109420:CDS 40.0%
!!! TGGTTTTGTTTGACGACACA+TGG - chr1_3:21397209-21397228 None:intergenic 40.0%
GTGTCGTCAAACAAAACCAA+AGG + chr1_3:21397210-21397229 Msa0109420:CDS 40.0%
GTGATATTACCCGACAACAA+TGG + chr1_3:21397255-21397274 Msa0109420:CDS 40.0%
ATAGAGAGAGCCATTGTTGT+CGG - chr1_3:21397268-21397287 None:intergenic 40.0%
GTTGATCTTCAGAGACACAT+TGG - chr1_3:21397512-21397531 None:intergenic 40.0%
! GTCTCTGAAGATCAACGTTA+AGG + chr1_3:21397516-21397535 Msa0109420:CDS 40.0%
! TTCCGTCTTATTGATGCAGA+TGG + chr1_3:21397604-21397623 Msa0109420:intron 40.0%
! TCCGTCTTATTGATGCAGAT+GGG + chr1_3:21397605-21397624 Msa0109420:intron 40.0%
CAATGGTATTCTGCAGCTTA+CGG - chr1_3:21397657-21397676 None:intergenic 40.0%
GATGTTACACACCCTGAAAA+TGG + chr1_3:21397710-21397729 Msa0109420:CDS 40.0%
TGTTACACACCCTGAAAATG+GGG + chr1_3:21397712-21397731 Msa0109420:CDS 40.0%
AACCATACAGCTGCTATTGA+GGG - chr1_3:21397749-21397768 None:intergenic 40.0%
AAACCATACAGCTGCTATTG+AGG - chr1_3:21397750-21397769 None:intergenic 40.0%
TGTAACTTCAGGCCAATCTT+GGG - chr1_3:21397870-21397889 None:intergenic 40.0%
TTGTAACTTCAGGCCAATCT+TGG - chr1_3:21397871-21397890 None:intergenic 40.0%
TAGTTAGTGGTGGCATGATA+CGG + chr1_3:21397978-21397997 Msa0109420:CDS 40.0%
GTTTCATTTAGAAGGGCAAC+AGG + chr1_3:21398115-21398134 Msa0109420:CDS 40.0%
TATATGACAATGTTGCACCG+AGG + chr1_3:21398257-21398276 Msa0109420:intron 40.0%
! TTGGACATTTTGTACAGGGA+TGG + chr1_3:21398305-21398324 Msa0109420:intron 40.0%
! TATGAAGGCATGTGCTTCTT+TGG + chr1_3:21398465-21398484 Msa0109420:intron 40.0%
!! GTTACTGGAGGTTGATAGTT+TGG - chr1_3:21398493-21398512 None:intergenic 40.0%
GGTTATTTGCAAACAACCAC+AGG + chr1_3:21398545-21398564 Msa0109420:CDS 40.0%
!! GGGATAGAAACAGTACTGAT+CGG + chr1_3:21398566-21398585 Msa0109420:CDS 40.0%
TCGAGAACATTCAACATACC+AGG - chr1_3:21398607-21398626 None:intergenic 40.0%
GGCCAACTTAGAGAGATTAA+AGG - chr1_3:21398896-21398915 None:intergenic 40.0%
!!! CTGTTTTAGCATTCCTTCTC+GGG + chr1_3:21398936-21398955 Msa0109420:intron 40.0%
! CTAACCCTCACTCTCTTTTA+GGG - chr1_3:21398998-21399017 None:intergenic 40.0%
! TCTAACCCTCACTCTCTTTT+AGG - chr1_3:21398999-21399018 None:intergenic 40.0%
! GAACATGATAATGAGCTGGA+CGG - chr1_3:21399144-21399163 None:intergenic 40.0%
GGATGAAAACAACTTCACAG+CGG + chr1_3:21399168-21399187 Msa0109420:CDS 40.0%
! AAATTTTTCCGTTTGTCCCG+AGG + chr1_3:21399345-21399364 Msa0109420:intron 40.0%
! AATTTTTCCGTTTGTCCCGA+GGG + chr1_3:21399346-21399365 Msa0109420:intron 40.0%
AACTGCACAACACAACCAAA+AGG - chr1_3:21399515-21399534 None:intergenic 40.0%
AAATGTGCGTAATATGCTGG+AGG - chr1_3:21399538-21399557 None:intergenic 40.0%
GCTAAATGTGCGTAATATGC+TGG - chr1_3:21399541-21399560 None:intergenic 40.0%
ATTTCGAGCACGTTTCTACA+CGG + chr1_3:21399564-21399583 Msa0109420:CDS 40.0%
! TTCACATTTTCCTTCAGTGC+TGG - chr1_3:21399676-21399695 None:intergenic 40.0%
GTTTGTCAATGGTAGATGCA+TGG + chr1_3:21399730-21399749 Msa0109420:three_prime_UTR 40.0%
GACTCTTCAACATAGTTGCA+AGG + chr1_3:21399850-21399869 Msa0109420:three_prime_UTR 40.0%
! CACGCATGCAAAAGAGGTTT+TGG - chr1_3:21391998-21392017 None:intergenic 45.0%
GGAGTGGTGAAGATGAAGAA+AGG - chr1_3:21392048-21392067 None:intergenic 45.0%
TTCATTCTTTGGTAGGGGAC+AGG + chr1_3:21392606-21392625 Msa0109420:intron 45.0%
TTGCTTGAGGTGGTGAAGTT+TGG - chr1_3:21393546-21393565 None:intergenic 45.0%
! CAAAGAGTGGTGGAAGAAGA+AGG + chr1_3:21393563-21393582 Msa0109420:CDS 45.0%
ACAGTACAAGGTCCACAACT+TGG - chr1_3:21393634-21393653 None:intergenic 45.0%
GGTTAATTGTGTCCGGTAGA+TGG + chr1_3:21394161-21394180 Msa0109420:intron 45.0%
TGTCTTCGAAAGCCGTAAAC+AGG + chr1_3:21394500-21394519 Msa0109420:CDS 45.0%
AAGAATCTGACCTTGGCATG+AGG + chr1_3:21394554-21394573 Msa0109420:CDS 45.0%
ATGAGGCTTCCAGCATATGA+TGG + chr1_3:21394571-21394590 Msa0109420:CDS 45.0%
! AAGAGCTAACTTGCATCACC+TGG + chr1_3:21394904-21394923 Msa0109420:CDS 45.0%
! AGAGCTAACTTGCATCACCT+GGG + chr1_3:21394905-21394924 Msa0109420:CDS 45.0%
CCCAATGGGACAAAACCTTT+AGG - chr1_3:21395102-21395121 None:intergenic 45.0%
!! AAAGGTTTTGTCCCATTGGG+AGG + chr1_3:21395102-21395121 Msa0109420:intron 45.0%
! ATTAGAGCACCACAAAGGCT+CGG + chr1_3:21395143-21395162 Msa0109420:CDS 45.0%
! TCTGAGTAGGCCTTATGCTT+TGG - chr1_3:21395199-21395218 None:intergenic 45.0%
AAGCATAAGGCCTACTCAGA+TGG + chr1_3:21395199-21395218 Msa0109420:CDS 45.0%
AGCATAAGGCCTACTCAGAT+GGG + chr1_3:21395200-21395219 Msa0109420:CDS 45.0%
ATGGGCCTTTCCCTCAATAT+CGG + chr1_3:21395218-21395237 Msa0109420:CDS 45.0%
AGCAGCAGAAGCCATATCTA+TGG - chr1_3:21395322-21395341 None:intergenic 45.0%
TTTCATTGAACCTCTTCCGG+TGG + chr1_3:21395341-21395360 Msa0109420:CDS 45.0%
!! GAGTTTGTTGGCCAGCTATT+AGG + chr1_3:21395366-21395385 Msa0109420:CDS 45.0%
ATAGTCGAGTTCTCGTCAAC+GGG - chr1_3:21396082-21396101 None:intergenic 45.0%
CATAGTCGAGTTCTCGTCAA+CGG - chr1_3:21396083-21396102 None:intergenic 45.0%
TTTCCACCAACTTGAAGGCA+AGG - chr1_3:21396166-21396185 None:intergenic 45.0%
TTACATGTCTCTGGTTGCTC+AGG + chr1_3:21396281-21396300 Msa0109420:intron 45.0%
TCAGGCCTGTAAAATTGTCG+AGG + chr1_3:21396299-21396318 Msa0109420:intron 45.0%
CAGGCCTGTAAAATTGTCGA+GGG + chr1_3:21396300-21396319 Msa0109420:intron 45.0%
AGGCCTGTAAAATTGTCGAG+GGG + chr1_3:21396301-21396320 Msa0109420:intron 45.0%
! TTGCCCCTCGACAATTTTAC+AGG - chr1_3:21396307-21396326 None:intergenic 45.0%
TTTCTCGATCACGAGGTCTT+TGG - chr1_3:21396386-21396405 None:intergenic 45.0%
! AGTCAGCGAGAAGTTAGCTT+CGG + chr1_3:21396583-21396602 Msa0109420:CDS 45.0%
AAGTGAATTACCCAAGGAGC+GGG - chr1_3:21396626-21396645 None:intergenic 45.0%
GAAGTGAATTACCCAAGGAG+CGG - chr1_3:21396627-21396646 None:intergenic 45.0%
ATATTCCACTGGCCAACTTG+GGG - chr1_3:21396768-21396787 None:intergenic 45.0%
CATATTCCACTGGCCAACTT+GGG - chr1_3:21396769-21396788 None:intergenic 45.0%
TCATATTCCACTGGCCAACT+TGG - chr1_3:21396770-21396789 None:intergenic 45.0%
! AAATTTTTCACGAGGCGTGC+AGG + chr1_3:21396960-21396979 Msa0109420:CDS 45.0%
GCACAAATGTGTCAAGTCTC+TGG + chr1_3:21397015-21397034 Msa0109420:CDS 45.0%
AATGTGTCAAGTCTCTGGCA+TGG + chr1_3:21397020-21397039 Msa0109420:CDS 45.0%
GCATTGTAGATCGGGATAAC+AGG - chr1_3:21397147-21397166 None:intergenic 45.0%
TCGGGTTTCGCATTGTAGAT+CGG - chr1_3:21397156-21397175 None:intergenic 45.0%
TAGAGAGAGCCATTGTTGTC+GGG - chr1_3:21397267-21397286 None:intergenic 45.0%
GACAACAATGGCTCTCTCTA+TGG + chr1_3:21397267-21397286 Msa0109420:CDS 45.0%
CGTATTTGTGAGACTGACCT+TGG + chr1_3:21397427-21397446 Msa0109420:CDS 45.0%
CCCCATCTGCATCAATAAGA+CGG - chr1_3:21397609-21397628 None:intergenic 45.0%
! CCGTCTTATTGATGCAGATG+GGG + chr1_3:21397606-21397625 Msa0109420:intron 45.0%
! CGTCTTATTGATGCAGATGG+GGG + chr1_3:21397607-21397626 Msa0109420:intron 45.0%
! GTCTTATTGATGCAGATGGG+GGG + chr1_3:21397608-21397627 Msa0109420:intron 45.0%
CGTAAGCTGCAGAATACCAT+TGG + chr1_3:21397655-21397674 Msa0109420:CDS 45.0%
GTCGGTATGTCACTAACCAA+TGG - chr1_3:21397674-21397693 None:intergenic 45.0%
! TGGAGTCTTCCCCATTTTCA+GGG - chr1_3:21397724-21397743 None:intergenic 45.0%
ACCATACAGCTGCTATTGAG+GGG - chr1_3:21397748-21397767 None:intergenic 45.0%
CCTGCGTACTTTGTAACTTC+AGG - chr1_3:21397881-21397900 None:intergenic 45.0%
CCTGAAGTTACAAAGTACGC+AGG + chr1_3:21397878-21397897 Msa0109420:CDS 45.0%
CACTAACTACACCACGAACA+GGG - chr1_3:21397967-21397986 None:intergenic 45.0%
CAACAAATCCCTGCACAAAC+AGG - chr1_3:21398095-21398114 None:intergenic 45.0%
CTGTTTGTGCAGGGATTTGT+TGG + chr1_3:21398093-21398112 Msa0109420:intron 45.0%
TACAGGGATGGTGTAAGTGA+AGG + chr1_3:21398317-21398336 Msa0109420:intron 45.0%
CCAACTCGTAGAGTAGAACT+TGG - chr1_3:21398352-21398371 None:intergenic 45.0%
CCAAGTTCTACTCTACGAGT+TGG + chr1_3:21398349-21398368 Msa0109420:CDS 45.0%
! TCTACGAGTTGGATGCGATT+CGG + chr1_3:21398360-21398379 Msa0109420:CDS 45.0%
!! CAGTACTGTTTCTATCCCTG+TGG - chr1_3:21398564-21398583 None:intergenic 45.0%
!! AGAAACAGTACTGATCGGAG+TGG + chr1_3:21398571-21398590 Msa0109420:CDS 45.0%
! TTTTATCTCTGCAGTCACGC+TGG + chr1_3:21398767-21398786 Msa0109420:CDS 45.0%
GTCCTTCCACCACTTTATGT+GGG - chr1_3:21398963-21398982 None:intergenic 45.0%
GAAAACAACTTCACAGCGGA+TGG + chr1_3:21399172-21399191 Msa0109420:CDS 45.0%
! ACTCCTTAAGCCGATTCCAT+AGG + chr1_3:21399372-21399391 Msa0109420:intron 45.0%
! ATGCCTATGGAATCGGCTTA+AGG - chr1_3:21399378-21399397 None:intergenic 45.0%
!!! TTTTCCTTCAGTGCTGGCAA+TGG - chr1_3:21399670-21399689 None:intergenic 45.0%
GTCAATGGTAGATGCATGGA+TGG + chr1_3:21399734-21399753 Msa0109420:three_prime_UTR 45.0%
TAGATGCATGGATGGTAGCA+TGG + chr1_3:21399742-21399761 Msa0109420:three_prime_UTR 45.0%
!! GGCCTCTAGAACGTTAATCA+TGG - chr1_3:21399891-21399910 None:intergenic 45.0%
!! ACGTTCTAGAGGCCTAGTTT+AGG + chr1_3:21399897-21399916 Msa0109420:three_prime_UTR 45.0%
ATTTGCGAGACACTCGCATT+AGG + chr1_3:21399943-21399962 Msa0109420:three_prime_UTR 45.0%
!! AAAATAAATAAAATAATCTA+CGG - chr1_3:21394786-21394805 None:intergenic 5.0%
!! AATTATTAATATTAATATGA+AGG - chr1_3:21396488-21396507 None:intergenic 5.0%
TCACCACCTCAAGCAAAGAG+TGG + chr1_3:21393550-21393569 Msa0109420:CDS 50.0%
CTTCCACCACTCTTTGCTTG+AGG - chr1_3:21393559-21393578 None:intergenic 50.0%
AGACCAGGTTATGGACAAGC+TGG + chr1_3:21393760-21393779 Msa0109420:CDS 50.0%
GTACCAGCTTGTCCATAACC+TGG - chr1_3:21393766-21393785 None:intergenic 50.0%
ACGGCTTTCGAAGACACTTC+CGG - chr1_3:21394496-21394515 None:intergenic 50.0%
! CAGGAGTTCTTCCCTTTTCC+TGG + chr1_3:21394614-21394633 Msa0109420:CDS 50.0%
!! CACCTGGGACAATTTCTAGC+CGG + chr1_3:21394920-21394939 Msa0109420:CDS 50.0%
TTCCGGCTAGAAATTGTCCC+AGG - chr1_3:21394925-21394944 None:intergenic 50.0%
AATCCTTCTCCGAGCCTTTG+TGG - chr1_3:21395155-21395174 None:intergenic 50.0%
ACAAAGGCTCGGAGAAGGAT+TGG + chr1_3:21395154-21395173 Msa0109420:CDS 50.0%
CACCTTCCTTGCCTTCAAGT+TGG + chr1_3:21396157-21396176 Msa0109420:CDS 50.0%
CACCAACTTGAAGGCAAGGA+AGG - chr1_3:21396162-21396181 None:intergenic 50.0%
!! CTTCCTTGCCTTCAAGTTGG+TGG + chr1_3:21396160-21396179 Msa0109420:CDS 50.0%
ACGAATTCTTCCCGCTCCTT+GGG + chr1_3:21396613-21396632 Msa0109420:CDS 50.0%
ATGGAATGACTGTTAGCCGC+TGG + chr1_3:21396929-21396948 Msa0109420:CDS 50.0%
TGGAATGACTGTTAGCCGCT+GGG + chr1_3:21396930-21396949 Msa0109420:CDS 50.0%
CGGGTTTCGCATTGTAGATC+GGG - chr1_3:21397155-21397174 None:intergenic 50.0%
AAAGCTTTCTCCACCTGCTC+GGG - chr1_3:21397174-21397193 None:intergenic 50.0%
CAAAGCTTTCTCCACCTGCT+CGG - chr1_3:21397175-21397194 None:intergenic 50.0%
! CTGGAGTCTTCCCCATTTTC+AGG - chr1_3:21397725-21397744 None:intergenic 50.0%
AGGTTGTAGCGTCCCAAGAT+TGG + chr1_3:21397855-21397874 Msa0109420:intron 50.0%
CCACTAACTACACCACGAAC+AGG - chr1_3:21397968-21397987 None:intergenic 50.0%
CCTGTTCGTGGTGTAGTTAG+TGG + chr1_3:21397965-21397984 Msa0109420:CDS 50.0%
GTTCGTGGTGTAGTTAGTGG+TGG + chr1_3:21397968-21397987 Msa0109420:CDS 50.0%
CAACAGGACAGAAGCCACAA+AGG + chr1_3:21398131-21398150 Msa0109420:CDS 50.0%
CGGAGTGGAAATATACTGCC+TGG + chr1_3:21398586-21398605 Msa0109420:CDS 50.0%
ACTTTATGTGGGACCCGAGA+AGG - chr1_3:21398952-21398971 None:intergenic 50.0%
TTCTCGGGTCCCACATAAAG+TGG + chr1_3:21398951-21398970 Msa0109420:intron 50.0%
! GTCCCACATAAAGTGGTGGA+AGG + chr1_3:21398958-21398977 Msa0109420:intron 50.0%
CGTCCTTCCACCACTTTATG+TGG - chr1_3:21398964-21398983 None:intergenic 50.0%
TGTACACGCTCCGTATCTGT+TGG + chr1_3:21399238-21399257 Msa0109420:CDS 50.0%
TGTCTTGGAACCACGACCAT+TGG - chr1_3:21399617-21399636 None:intergenic 50.0%
!!! GGGGTGTGTTTTGAAGGGAG+TGG - chr1_3:21392064-21392083 None:intergenic 55.0%
CCACCACTCTTTGCTTGAGG+TGG - chr1_3:21393556-21393575 None:intergenic 55.0%
CCACCTCAAGCAAAGAGTGG+TGG + chr1_3:21393553-21393572 Msa0109420:CDS 55.0%
ATGCTGGAAGCCTCATGCCA+AGG - chr1_3:21394567-21394586 None:intergenic 55.0%
! TGGAGCATCAGCACGCTTTC+CGG - chr1_3:21394942-21394961 None:intergenic 55.0%
! AAAGCGTGCTGATGCTCCAC+AGG + chr1_3:21394943-21394962 Msa0109420:CDS 55.0%
! TGAGAGAGCTAGCGTCGAAG+AGG + chr1_3:21394993-21395012 Msa0109420:CDS 55.0%
TCGGAGAAGGATTGGAGTCG+TGG + chr1_3:21395162-21395181 Msa0109420:CDS 55.0%
GAAGGATTGGAGTCGTGGTG+TGG + chr1_3:21395167-21395186 Msa0109420:CDS 55.0%
AGGGAAAGGCCCATCTGAGT+AGG - chr1_3:21395212-21395231 None:intergenic 55.0%
CATTGAACCTCTTCCGGTGG+TGG + chr1_3:21395344-21395363 Msa0109420:CDS 55.0%
ACAAACTCCACCACCGGAAG+AGG - chr1_3:21395354-21395373 None:intergenic 55.0%
!! CTTCCGGTGGTGGAGTTTGT+TGG + chr1_3:21395354-21395373 Msa0109420:CDS 55.0%
TGGCCAACAAACTCCACCAC+CGG - chr1_3:21395360-21395379 None:intergenic 55.0%
GTCTGATGCAGACCGCATCA+AGG + chr1_3:21395413-21395432 Msa0109420:intron 55.0%
GAACAAGGGCCTGCTTGACT+TGG + chr1_3:21395449-21395468 Msa0109420:intron 55.0%
! CAGCGAGAAGTTAGCTTCGG+TGG + chr1_3:21396586-21396605 Msa0109420:CDS 55.0%
CACGAATTCTTCCCGCTCCT+TGG + chr1_3:21396612-21396631 Msa0109420:CDS 55.0%
! GTTTACCCCAAGTTGGCCAG+TGG + chr1_3:21396760-21396779 Msa0109420:CDS 55.0%
CTACAATGCGAAACCCGAGC+AGG + chr1_3:21397158-21397177 Msa0109420:CDS 55.0%
TACAGCTGCTATTGAGGGGC+TGG - chr1_3:21397744-21397763 None:intergenic 55.0%
GCCCCTCAATAGCAGCTGTA+TGG + chr1_3:21397744-21397763 Msa0109420:intron 55.0%
! CGAGTTGGATGCGATTCGGA+AGG + chr1_3:21398364-21398383 Msa0109420:CDS 55.0%
TCGGGTCCCACATAAAGTGG+TGG + chr1_3:21398954-21398973 Msa0109420:intron 55.0%
AGATACGGAGCGTGTACACC+TGG - chr1_3:21399236-21399255 None:intergenic 55.0%
GAGTACTCCCTCGGGACAAA+CGG - chr1_3:21399356-21399375 None:intergenic 55.0%
!! GGCTTAAGGAGTACTCCCTC+GGG - chr1_3:21399364-21399383 None:intergenic 55.0%
!! CGGCTTAAGGAGTACTCCCT+CGG - chr1_3:21399365-21399384 None:intergenic 55.0%
GAACCAGTCTCCTGAAGGTC+TGG - chr1_3:21399592-21399611 None:intergenic 55.0%
TGGTGGAACCAGTCTCCTGA+AGG - chr1_3:21399597-21399616 None:intergenic 55.0%
! CAGGAGACTGGTTCCACCAA+TGG + chr1_3:21399598-21399617 Msa0109420:CDS 55.0%
! ACTGGTTCCACCAATGGTCG+TGG + chr1_3:21399604-21399623 Msa0109420:CDS 55.0%
CTTGGAACCACGACCATTGG+TGG - chr1_3:21399614-21399633 None:intergenic 55.0%
TGGCTTGACACCGCAATCTC+CGG - chr1_3:21399650-21399669 None:intergenic 55.0%
! CAAGCCATTGCCAGCACTGA+AGG + chr1_3:21399663-21399682 Msa0109420:CDS 55.0%
AGGGGACAGGCCTAAGAAGC+TGG + chr1_3:21392619-21392638 Msa0109420:intron 60.0%
GCACCACAAAGGCTCGGAGA+AGG + chr1_3:21395149-21395168 Msa0109420:CDS 60.0%
CAATGCGAAACCCGAGCAGG+TGG + chr1_3:21397161-21397180 Msa0109420:CDS 60.0%
ACTTGGCACGACCCTGTTCG+TGG + chr1_3:21397953-21397972 Msa0109420:CDS 60.0%
CTACACGGAGCCAGACCTTC+AGG + chr1_3:21399579-21399598 Msa0109420:CDS 60.0%
GAGCCAGACCTTCAGGAGAC+TGG + chr1_3:21399586-21399605 Msa0109420:CDS 60.0%
TCCAAGACAACGCGTGCAGC+CGG + chr1_3:21399628-21399647 Msa0109420:CDS 60.0%
! GCGTGCTGATGCTCCACAGG+AGG + chr1_3:21394946-21394965 Msa0109420:CDS 65.0%
CTGCAGTCACGCTGGCATCC+AGG + chr1_3:21398775-21398794 Msa0109420:CDS 65.0%
TCCGGCTGCACGCGTTGTCT+TGG - chr1_3:21399632-21399651 None:intergenic 65.0%
ACGCGTGCAGCCGGAGATTG+CGG + chr1_3:21399637-21399656 Msa0109420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 21391816 21400200 21391816 ID=Msa0109420;Name=Msa0109420
chr1_3 mRNA 21391816 21400200 21391816 ID=Msa0109420-mRNA-1;Parent=Msa0109420;Name=Msa0109420-mRNA-1;_AED=0.14;_eAED=0.14;_QI=659|0.95|0.95|1|0.95|0.90|22|483|967
chr1_3 exon 21391816 21392249 21391816 ID=Msa0109420-mRNA-1:exon:7670;Parent=Msa0109420-mRNA-1
chr1_3 exon 21393169 21393852 21393169 ID=Msa0109420-mRNA-1:exon:7671;Parent=Msa0109420-mRNA-1
chr1_3 exon 21394481 21394689 21394481 ID=Msa0109420-mRNA-1:exon:7672;Parent=Msa0109420-mRNA-1
chr1_3 exon 21394865 21395014 21394865 ID=Msa0109420-mRNA-1:exon:7673;Parent=Msa0109420-mRNA-1
chr1_3 exon 21395106 21395239 21395106 ID=Msa0109420-mRNA-1:exon:7674;Parent=Msa0109420-mRNA-1
chr1_3 exon 21395325 21395395 21395325 ID=Msa0109420-mRNA-1:exon:7675;Parent=Msa0109420-mRNA-1
chr1_3 exon 21395875 21395981 21395875 ID=Msa0109420-mRNA-1:exon:7676;Parent=Msa0109420-mRNA-1
chr1_3 exon 21396075 21396216 21396075 ID=Msa0109420-mRNA-1:exon:7677;Parent=Msa0109420-mRNA-1
chr1_3 exon 21396303 21396419 21396303 ID=Msa0109420-mRNA-1:exon:7678;Parent=Msa0109420-mRNA-1
chr1_3 exon 21396527 21396634 21396527 ID=Msa0109420-mRNA-1:exon:7679;Parent=Msa0109420-mRNA-1
chr1_3 exon 21396726 21396797 21396726 ID=Msa0109420-mRNA-1:exon:7680;Parent=Msa0109420-mRNA-1
chr1_3 exon 21396919 21397041 21396919 ID=Msa0109420-mRNA-1:exon:7681;Parent=Msa0109420-mRNA-1
chr1_3 exon 21397129 21397288 21397129 ID=Msa0109420-mRNA-1:exon:7682;Parent=Msa0109420-mRNA-1
chr1_3 exon 21397416 21397537 21397416 ID=Msa0109420-mRNA-1:exon:7683;Parent=Msa0109420-mRNA-1
chr1_3 exon 21397623 21397760 21397623 ID=Msa0109420-mRNA-1:exon:7684;Parent=Msa0109420-mRNA-1
chr1_3 exon 21397857 21397999 21397857 ID=Msa0109420-mRNA-1:exon:7685;Parent=Msa0109420-mRNA-1
chr1_3 exon 21398105 21398167 21398105 ID=Msa0109420-mRNA-1:exon:7686;Parent=Msa0109420-mRNA-1
chr1_3 exon 21398322 21398385 21398322 ID=Msa0109420-mRNA-1:exon:7687;Parent=Msa0109420-mRNA-1
chr1_3 exon 21398472 21398607 21398472 ID=Msa0109420-mRNA-1:exon:7688;Parent=Msa0109420-mRNA-1
chr1_3 exon 21398723 21398796 21398723 ID=Msa0109420-mRNA-1:exon:7689;Parent=Msa0109420-mRNA-1
chr1_3 exon 21399133 21399259 21399133 ID=Msa0109420-mRNA-1:exon:7690;Parent=Msa0109420-mRNA-1
chr1_3 exon 21399533 21400200 21399533 ID=Msa0109420-mRNA-1:exon:7691;Parent=Msa0109420-mRNA-1
chr1_3 five_prime_UTR 21391816 21392249 21391816 ID=Msa0109420-mRNA-1:five_prime_utr;Parent=Msa0109420-mRNA-1
chr1_3 five_prime_UTR 21393169 21393393 21393169 ID=Msa0109420-mRNA-1:five_prime_utr;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21393394 21393852 21393394 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21394481 21394689 21394481 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21394865 21395014 21394865 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21395106 21395239 21395106 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21395325 21395395 21395325 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21395875 21395981 21395875 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21396075 21396216 21396075 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21396303 21396419 21396303 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21396527 21396634 21396527 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21396726 21396797 21396726 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21396919 21397041 21396919 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21397129 21397288 21397129 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21397416 21397537 21397416 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21397623 21397760 21397623 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21397857 21397999 21397857 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21398105 21398167 21398105 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21398322 21398385 21398322 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21398472 21398607 21398472 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21398723 21398796 21398723 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21399133 21399259 21399133 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 CDS 21399533 21399717 21399533 ID=Msa0109420-mRNA-1:cds;Parent=Msa0109420-mRNA-1
chr1_3 three_prime_UTR 21399718 21400200 21399718 ID=Msa0109420-mRNA-1:three_prime_utr;Parent=Msa0109420-mRNA-1
Gene Sequence

>Msa0109420

ATGCCTTTAAGGCAAATGAAAGAGAGTTCAGAACAACACCTTGTGATCAAACCTCATCAACAAAACACTATGAGTCAAGCTAAGAAGGTTACTAAAGCTGTTCAGAATGGTAAAGGTCCACCATTAGTCATGTCACAAGAACAACAAAACCAAACTTCACCACCTCAAGCAAAGAGTGGTGGAAGAAGAAGGAGTAGAAATGGTAGAAAATCTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTGGACCTTGTACTGTTGTGAAGAGCAATGAAAATGGCCATGTTGTTGAAAATGGAAACATAGTCTCTAGTGATGTTGAAATGAGTTTTCCTACTTCAAGCAAGTCTTTGAGTTTTGCTCAAAGACCAGGTTATGGACAAGCTGGTACAAAATGCATTGTTAAAGCTAACCACTTCTTTGCAGAATTACCAGACAAGGACTTGAACCAATATGATGTAACTATTACTCCGGAAGTGTCTTCGAAAGCCGTAAACAGGTCTATCATAGCAGAACTTGTGAGGCTGTACAAAGAATCTGACCTTGGCATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTTTACACAGCAGGAGTTCTTCCCTTTTCCTGGAGAGAGTTTAAGATTAAGCTTATCGAAGAAGAGGATGGAATTAATGGTCCCAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCAAGAGCTAACTTGCATCACCTGGGACAATTTCTAGCCGGAAAGCGTGCTGATGCTCCACAGGAGGCAATACAAATTCTTGACATCGTACTGAGAGAGCTAGCGTCGAAGAGGTTTTGTCCCATTGGGAGGTCATTTTATTCACCTGATATTAGAGCACCACAAAGGCTCGGAGAAGGATTGGAGTCGTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATCGATATGGCTTCTGCTGCTTTCATTGAACCTCTTCCGGTGGTGGAGTTTGTTGGCCAGCTATTAGGAAAAGATATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCCGGCATAACTTCTCAACCAACAAGAGAACTTGTGTTTCCCGTTGACGAGAACTCGACTATGAAATCAGTGGTTGAATACTTCCAAGAAATGTATGGTTTCACTATAAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGTAAAATTGTCGAGGGGCAACGATATACTAAAAGGTTGAATGAAAAGCAAATTACTTCTCTCTTGAAAGTCACATGCCAAAGACCTCGTGATCGAGAAAATGACATTTTACGGACAGTTCAGCATAACGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAGTCAGCGAGAAGTTAGCTTCGGTGGAAGCACGAATTCTTCCCGCTCCTTGGCTTAAATATCACGAGAGTGGGAAAGAAAAAAATTGTTTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGCTGGGCATGCATAAATTTTTCACGAGGCGTGCAGGATAGCGTTGCTCGTACTTTTTGTAACGAGCTTGCACAAATGTGTCAAGTCTCTGGCATGGAGTTTAATCTGGAGCCTGTTATCCCGATCTACAATGCGAAACCCGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCGTCAAACAAAACCAAAGGAAAAGAATTGGAGCTTTTGTTAGTGATATTACCCGACAACAATGGCTCTCTCTATGGTGATCTCAAGCGTATTTGTGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTAACAAAGCATGTCTTTAAGATCACTAAGCAATACTTGGCCAATGTGTCTCTGAAGATCAACGTTAAGATGGGGGGTAGAAACACTGTTCTTGTTGATGCCGTAAGCTGCAGAATACCATTGGTTAGTGACATACCGACAATAATATTTGGCGCAGATGTTACACACCCTGAAAATGGGGAAGACTCCAGCCCCTCAATAGCAGCTGTTGTAGCGTCCCAAGATTGGCCTGAAGTTACAAAGTACGCAGGTTTAGTTTGTGCTCAACCGCAAAGACAAGAACTTATACAAGATCTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATACGGGATTTGTTGGTTTCATTTAGAAGGGCAACAGGACAGAAGCCACAAAGGATTATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAGTTCTACTCTACGAGTTGGATGCGATTCGGAAGGCATGTGCTTCTTTGGAGCCAAACTATCAACCTCCAGTAACTTTCATAGTTGTGCAAAAAAGACATCATACTCGGTTATTTGCAAACAACCACAGGGATAGAAACAGTACTGATCGGAGTGGAAATATACTGCCTGGAACTGTTGTTGATACCAAAATTTGTCATCCAACAGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGCCGTCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTCACAGCGGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTACGCACATTTAGCAGCATTTCGAGCACGTTTCTACACGGAGCCAGACCTTCAGGAGACTGGTTCCACCAATGGTCGTGGTTCCAAGACAACGCGTGCAGCCGGAGATTGCGGTGTCAAGCCATTGCCAGCACTGAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAA
Protein sequence

>Msa0109420

MPLRQMKESSEQHLVIKPHQQNTMSQAKKVTKAVQNGKGPPLVMSQEQQNQTSPPQAKSGGRRRSRNGRKSDQVDVLMRPSCGPCTVVKSNENGHVVENGNIVSSDVEMSFPTSSKSLSFAQRPGYGQAGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRAPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTNGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC*