AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0110950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110950 MtrunA17_Chr1g0168851 97.526 485 12 0 499 983 146 630 0.0 972
Msa0110950 MtrunA17_Chr5g0406461 21.393 402 240 14 45 384 74 461 1.66e-12 72.0
Msa0110950 MtrunA17_Chr3g0110601 21.728 405 236 15 47 384 133 523 1.01e-11 69.3
Msa0110950 MtrunA17_Chr4g0006661 20.657 426 250 15 22 384 119 519 2.32e-11 68.2
Msa0110950 MtrunA17_Chr3g0111171 28.161 174 107 4 41 212 97 254 3.62e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110950 AT4G13550.1 50.485 515 228 7 483 983 97 598 4.37e-159 489
Msa0110950 AT4G13550.3 50.485 515 228 7 483 983 129 630 1.06e-158 489
Msa0110950 AT4G13550.2 50.485 515 228 7 483 983 129 630 1.97e-158 489

Find 277 sgRNAs with CRISPR-Local

Find 632 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGATATTTCTGTGCTTTC+AGG 0.142312 1_3:+24099503 None:intergenic
AAATCTCCACCTATCCTTTC+AGG 0.153955 1_3:+24097262 None:intergenic
ACGCCTTTCATCTTTCATTT+TGG 0.161400 1_3:+24099346 None:intergenic
AAGATTAGTGATTGCATTTC+GGG 0.179184 1_3:-24098882 Msa0110950:CDS
CTGGAGTTCCTAAACAAAAT+TGG 0.233638 1_3:-24099581 Msa0110950:CDS
GGAAATCCCTCGTCACTTTC+GGG 0.256550 1_3:-24105339 Msa0110950:CDS
CCTTTCCACGACCTCGCTTC+GGG 0.262565 1_3:+24104388 None:intergenic
GAAGATTAGTGATTGCATTT+CGG 0.290182 1_3:-24098883 Msa0110950:CDS
GTTGCTCGACATTTCGCTCT+TGG 0.302082 1_3:+24105591 None:intergenic
TCACGGTATTTGCTGCGAAT+TGG 0.302993 1_3:+24105108 None:intergenic
AAGTCTCCTACCCCAGAAAA+TGG 0.303438 1_3:-24099248 Msa0110950:CDS
TTCACTAGAAGCTTCATTAG+AGG 0.305353 1_3:+24099796 None:intergenic
AGAACTTTCAGGTTGCAATT+TGG 0.310411 1_3:-24098922 Msa0110950:intron
CGAATGCATATTCTACAAAT+TGG 0.312700 1_3:+24099930 None:intergenic
GGGGAATGCAGTCGTGGATT+TGG 0.315635 1_3:-24100809 Msa0110950:CDS
TGGAAATCCCTCGTCACTTT+CGG 0.321226 1_3:-24105340 Msa0110950:CDS
CACGGTATTTGCTGCGAATT+GGG 0.328559 1_3:+24105109 None:intergenic
CTCCCTCAGCTCCCTCTCTC+TGG 0.337560 1_3:+24105457 None:intergenic
TCCTTTCCACGACCTCGCTT+CGG 0.337990 1_3:+24104387 None:intergenic
TCCTTCGGTAGAATCTTCTT+TGG 0.346239 1_3:+24099304 None:intergenic
TGTGACAGTGAAACTGAAAA+TGG 0.346310 1_3:-24099746 Msa0110950:CDS
GAAGATATTTATATTGAATC+TGG 0.349953 1_3:-24099536 Msa0110950:CDS
CGCTTATGAACATCTGCGTT+TGG 0.352179 1_3:+24105258 None:intergenic
TGGGTAGTGGTGGAGAGGTT+TGG 0.353635 1_3:-24100524 Msa0110950:CDS
CGATCCAGTGGGACACCTCT+TGG 0.357098 1_3:+24104744 None:intergenic
CTCCCACCATATTGCAAGAT+TGG 0.359757 1_3:+24104235 None:intergenic
GGACCGTGAATATCTTCTTC+TGG 0.364728 1_3:+24104260 None:intergenic
AAATATGATATTGAAAGCTC+TGG 0.368892 1_3:-24099851 Msa0110950:CDS
TCCCATGGGTTCCTTCTGAT+AGG 0.371105 1_3:+24104696 None:intergenic
AGTTGTCGGTATCGTGTCCT+TGG 0.373754 1_3:+24104535 None:intergenic
CCATCCCACTTTAATTTCTC+AGG 0.375798 1_3:+24099605 None:intergenic
GAGAATGGTTGGAACACTTT+AGG 0.376421 1_3:+24105380 None:intergenic
TCTGCACTCAGAAAGGTTAC+TGG 0.380475 1_3:-24099974 Msa0110950:CDS
TCAGCTCGGCCTCCCGAGCA+AGG 0.382154 1_3:+24105528 None:intergenic
GGGAAATCAAATAATGATAC+TGG 0.382688 1_3:-24099830 Msa0110950:CDS
GCCTGAAAGCACAGAAATAT+CGG 0.382924 1_3:-24099504 Msa0110950:CDS
GCCTCCAAACCCTCGTCCTA+TGG 0.385619 1_3:-24104595 Msa0110950:CDS
CGTCCTATGGGGAGTGAAGC+AGG 0.386034 1_3:-24104582 Msa0110950:CDS
TGCTAACGTTGTTCAAAAGT+TGG 0.386857 1_3:-24099639 Msa0110950:CDS
CTGCTAAAAGCAATATCAAA+TGG 0.388724 1_3:-24102368 Msa0110950:CDS
AACTGAAAATGGACACGCTT+TGG 0.389290 1_3:-24099735 Msa0110950:CDS
CTCCCCATAGGACGAGGGTT+TGG 0.391434 1_3:+24104591 None:intergenic
GTCCAACCAATCTTGCAATA+TGG 0.395902 1_3:-24104241 Msa0110950:CDS
TGCGTTTGTGTGGGGTTACA+AGG 0.401226 1_3:+24100833 None:intergenic
TGAATCCTTGAAGAGCTATC+TGG 0.403431 1_3:-24105039 Msa0110950:CDS
TGCATTTCGGGGAACAGAAC+AGG 0.405184 1_3:-24098870 Msa0110950:intron
CCTCATCCGAATCTCATTCA+TGG 0.406289 1_3:+24104893 None:intergenic
ATTCTACAAATTGGCTGACT+TGG 0.407387 1_3:+24099939 None:intergenic
TGCAGGCAGAAGCCCTTGCT+CGG 0.412193 1_3:-24105541 Msa0110950:CDS
AACTCAGACTTGATGAAACT+TGG 0.412460 1_3:+24099122 None:intergenic
GATCCAGTGGGACACCTCTT+GGG 0.412919 1_3:+24104745 None:intergenic
CAGTCCTTCAAAATCTTTGA+AGG 0.413681 1_3:+24104176 None:intergenic
CTTATGTGCTACACCCTTCA+AGG 0.418400 1_3:+24105196 None:intergenic
CACCTTGGGCGCTACGTTCA+AGG 0.420385 1_3:-24104468 Msa0110950:CDS
CTGATAGGGACTTCACGCTC+TGG 0.420720 1_3:+24104711 None:intergenic
TGCTAAAAGCAATATCAAAT+GGG 0.421313 1_3:-24102367 Msa0110950:CDS
GAGGAGGCTACCAGGACAAA+AGG 0.425005 1_3:-24104440 Msa0110950:CDS
TAACGTGTTTCAGGAAAACT+TGG 0.426954 1_3:-24103087 Msa0110950:intron
TAGTGGTGGAGAGGTTTGGC+TGG 0.427191 1_3:-24100520 Msa0110950:CDS
CAATTTGTAGAATATGCATT+CGG 0.427224 1_3:-24099929 Msa0110950:CDS
CAGATCAATCACAAACTTTG+AGG 0.428477 1_3:-24105153 Msa0110950:CDS
TATATATTAGGTTGCAGCTT+GGG 0.429629 1_3:-24100863 Msa0110950:intron
ACTGGTGGAGTTGGAAGGAA+TGG 0.433714 1_3:-24100544 Msa0110950:CDS
TTTCTCCCTTGTTATCTCCT+CGG 0.437237 1_3:+24104851 None:intergenic
AGGAGATACGCATGAAATAC+TGG 0.441730 1_3:-24100562 Msa0110950:CDS
CCCAGAAAATGGATCATTGT+TGG 0.443989 1_3:-24099237 Msa0110950:CDS
CCTCCAAACCCTCGTCCTAT+GGG 0.445337 1_3:-24104594 Msa0110950:CDS
TTTGAGAAGGGTCTGAACTC+TGG 0.446128 1_3:-24104954 Msa0110950:CDS
CTCAAAGTTTGTGATTGATC+TGG 0.446140 1_3:+24105154 None:intergenic
TCAAGGATTCAGTGGGGCGC+TGG 0.447920 1_3:+24105051 None:intergenic
GTTTGTATTTCCGTCGAGAA+TGG 0.453021 1_3:+24105365 None:intergenic
AATGTCACTGCCTACTCCTT+CGG 0.455354 1_3:+24099289 None:intergenic
GCTAACGTTGTTCAAAAGTT+GGG 0.455832 1_3:-24099638 Msa0110950:CDS
CGTCCCATCGTACGAGTCAA+TGG 0.460182 1_3:+24105310 None:intergenic
CTGAAAGTGCCATGGAGGCT+TGG 0.460334 1_3:-24099172 Msa0110950:CDS
TTCCAGTTGTTGCTTCAGCT+CGG 0.461989 1_3:+24105514 None:intergenic
GGCCGAGCTGAAGCAACAAC+TGG 0.463636 1_3:-24105516 Msa0110950:CDS
CATTCCCCATGCGTTTGTGT+GGG 0.466872 1_3:+24100824 None:intergenic
TTCATCATCAATTTCTTCAA+AGG 0.468717 1_3:+24100054 None:intergenic
CACATTCCATGAATGAGATT+CGG 0.469330 1_3:-24104899 Msa0110950:CDS
CCGGGCTAACGAGGATCGTC+GGG 0.470567 1_3:-24104802 Msa0110950:CDS
CCGAGCCAGATAGCTCTTCA+AGG 0.471213 1_3:+24105034 None:intergenic
TTGAAGGTAAAAGCTAATTG+AGG 0.478468 1_3:+24104192 None:intergenic
CCCGACGATCCTCGTTAGCC+CGG 0.478570 1_3:+24104802 None:intergenic
GGCCAGAGAGAGGGAGCTGA+GGG 0.478970 1_3:-24105459 Msa0110950:CDS
CACCATATTGCAAGATTGGT+TGG 0.479794 1_3:+24104239 None:intergenic
TGAAGGTAAAAGCTAATTGA+GGG 0.481031 1_3:+24104193 None:intergenic
TACCGTGAAGCCTTTCCTAC+TGG 0.481188 1_3:-24105093 Msa0110950:CDS
GTAGCACATAAGTGGATAGC+AGG 0.482289 1_3:-24105185 Msa0110950:CDS
GGGCGCTACGTTCAAGGAAG+GGG 0.483212 1_3:-24104462 Msa0110950:CDS
TGGGGAGTGAAGCAGGGTTG+TGG 0.487237 1_3:-24104575 Msa0110950:CDS
TGCCAGTAGGAAAGGCTTCA+CGG 0.490299 1_3:+24105091 None:intergenic
AATCACAAACTTTGAGGACT+TGG 0.491250 1_3:-24105147 Msa0110950:CDS
CTCTTGAGAAACAACGTGAC+TGG 0.491464 1_3:-24105425 Msa0110950:CDS
GAACACTTTAGGCATCAATC+TGG 0.492398 1_3:+24105391 None:intergenic
CCCATAGGACGAGGGTTTGG+AGG 0.492631 1_3:+24104594 None:intergenic
TCCGTATGTGGTCCTACAGA+TGG 0.493689 1_3:-24102400 Msa0110950:CDS
GCAGGCAGAAGCCCTTGCTC+GGG 0.495696 1_3:-24105540 Msa0110950:CDS
GCATGAAATACTGGTGGAGT+TGG 0.497752 1_3:-24100553 Msa0110950:CDS
GGCAGAAGCCCTTGCTCGGG+AGG 0.498041 1_3:-24105537 Msa0110950:CDS
GAAATTAAAGTGGGATGGAC+TGG 0.499170 1_3:-24099600 Msa0110950:CDS
GAGAGACACGAGGCAGAGAC+CGG 0.499213 1_3:-24104821 Msa0110950:CDS
CCCATGGGTTCCTTCTGATA+GGG 0.499994 1_3:+24104697 None:intergenic
GCTTCACTCCCCATAGGACG+AGG 0.504213 1_3:+24104585 None:intergenic
GAGTTGGAAGGAATGGGTAG+TGG 0.504826 1_3:-24100537 Msa0110950:CDS
GGCACGGTCAACACCATAGC+GGG 0.506393 1_3:-24104315 Msa0110950:CDS
TACGTTCAAGGAAGGGGAGG+AGG 0.507113 1_3:-24104456 Msa0110950:CDS
CGATCCCCGAAGCGAGGTCG+TGG 0.507821 1_3:-24104393 Msa0110950:CDS
AGGAAGGGGAGGAGGCTACC+AGG 0.508158 1_3:-24104448 Msa0110950:CDS
AGGATTCAGTGGGGCGCTGG+CGG 0.509566 1_3:+24105054 None:intergenic
AAGCTGAAGGAGGGCACGAA+AGG 0.511055 1_3:-24104347 Msa0110950:CDS
CCCACCATTGACTCGTACGA+TGG 0.511213 1_3:-24105314 Msa0110950:CDS
CAGCTCGGCCTCCCGAGCAA+GGG 0.512226 1_3:+24105529 None:intergenic
GTTGTCGGTATCGTGTCCTT+GGG 0.512923 1_3:+24104536 None:intergenic
GTCGGGAAGGAGTGATGAAA+AGG 0.515427 1_3:-24104785 Msa0110950:CDS
TCATGCTTCTTAACCTGTAG+AGG 0.516054 1_3:+24101863 None:intergenic
TTGATACAAGAGGGTCACCT+TGG 0.516511 1_3:-24104483 Msa0110950:CDS
TGGTGGAGAGGTTTGGCTGG+AGG 0.518588 1_3:-24100517 Msa0110950:intron
TTCCTTGAACGTAGCGCCCA+AGG 0.519393 1_3:+24104466 None:intergenic
GGGCGGCCTCCTCGATCCAG+TGG 0.522302 1_3:+24104732 None:intergenic
CATTATCAGTATCAGACATC+CGG 0.523680 1_3:+24099876 None:intergenic
TATCGTGTCCTTGGGTGCGA+TGG 0.526282 1_3:+24104544 None:intergenic
AACAAATCTGCCAGTAGGAA+AGG 0.526419 1_3:+24105083 None:intergenic
TGATAGGGACTTCACGCTCT+GGG 0.527240 1_3:+24104712 None:intergenic
GAGGAGATAACAAGGGAGAA+AGG 0.530759 1_3:-24104849 Msa0110950:CDS
TTTGTTATGGCATTTGAGAA+GGG 0.531218 1_3:-24104966 Msa0110950:CDS
TGATACAAGAGGGTCACCTT+GGG 0.532504 1_3:-24104482 Msa0110950:CDS
GATCTAATGCTTGTTCCAGC+CGG 0.532979 1_3:-24098740 Msa0110950:CDS
GCTCCCAAGAGGTGTCCCAC+TGG 0.534147 1_3:-24104748 Msa0110950:CDS
CTGGTGGAGTTGGAAGGAAT+GGG 0.535044 1_3:-24100543 Msa0110950:CDS
ATCTAATGCTTGTTCCAGCC+GGG 0.535771 1_3:-24098739 Msa0110950:intron
GTTCAACAACGCCACTCTCA+TGG 0.536101 1_3:-24105012 Msa0110950:CDS
GTATTTCCGTCGAGAATGGT+TGG 0.536788 1_3:+24105369 None:intergenic
CATGAATGAGATTCGGATGA+GGG 0.537376 1_3:-24104892 Msa0110950:CDS
CCCATCGTACGAGTCAATGG+TGG 0.538500 1_3:+24105313 None:intergenic
GATCGACTTGAATCTCTACT+AGG 0.539370 1_3:+24104411 None:intergenic
ACCGGGCTAACGAGGATCGT+CGG 0.539896 1_3:-24104803 Msa0110950:CDS
AGAAATGAATGTTACCCGGC+TGG 0.540515 1_3:+24098725 None:intergenic
TCCAGAAAATCCTCCCGCTA+TGG 0.540588 1_3:+24104302 None:intergenic
GCATTCCCCATGCGTTTGTG+TGG 0.542049 1_3:+24100823 None:intergenic
TGACGAACATCAACGTCTGC+AGG 0.545173 1_3:-24105558 Msa0110950:CDS
ATCAGATGGAGGCCAGAGAG+AGG 0.546355 1_3:-24105469 Msa0110950:CDS
GCGCGAGCTCAGACATCAGA+TGG 0.546457 1_3:-24105483 Msa0110950:CDS
AAGTTTGTGATTGATCTGGC+AGG 0.546539 1_3:+24105158 None:intergenic
TGAGCTCTTCCCTTGTTGAG+AGG 0.547571 1_3:+24104660 None:intergenic
TGAAGACTGAATTGCAGCAA+TGG 0.547909 1_3:+24099457 None:intergenic
TGAAGGGTGTAGCACATAAG+TGG 0.548041 1_3:-24105193 Msa0110950:CDS
TCGAAGGGTACGACAGTTGT+CGG 0.548338 1_3:+24104521 None:intergenic
TTCAACTGCTGAAAGTGCCA+TGG 0.548621 1_3:-24099180 Msa0110950:CDS
AAGGAGTGATGAAAAGGCTA+GGG 0.551024 1_3:-24104779 Msa0110950:CDS
AGGAGGCTACCAGGACAAAA+GGG 0.551391 1_3:-24104439 Msa0110950:CDS
ACAATGCTGGCCACTTCACT+AGG 0.554026 1_3:-24099149 Msa0110950:CDS
AATATGATATTGAAAGCTCT+GGG 0.554154 1_3:-24099850 Msa0110950:CDS
CCGTATGTGGTCCTACAGAT+GGG 0.554287 1_3:-24102399 Msa0110950:CDS
ATGCAGTCGTGGATTTGGAA+TGG 0.554383 1_3:-24100804 Msa0110950:CDS
CAGCATTGTCCAAGCCTCCA+TGG 0.555309 1_3:+24099163 None:intergenic
GAAGGAGTGATGAAAAGGCT+AGG 0.555696 1_3:-24104780 Msa0110950:CDS
TCCCTATCAGAAGGAACCCA+TGG 0.556542 1_3:-24104698 Msa0110950:CDS
AGGCCAGAGAGAGGGAGCTG+AGG 0.557612 1_3:-24105460 Msa0110950:CDS
CAACCAATCTTGCAATATGG+TGG 0.558082 1_3:-24104238 Msa0110950:CDS
CACTTTAGGCATCAATCTGG+TGG 0.559234 1_3:+24105394 None:intergenic
CCCATCTGTAGGACCACATA+CGG 0.559591 1_3:+24102399 None:intergenic
TTGGAAGGAATGGGTAGTGG+TGG 0.560825 1_3:-24100534 Msa0110950:CDS
AGGAATGGGTAGTGGTGGAG+AGG 0.561118 1_3:-24100529 Msa0110950:CDS
CATGGAGGCTTGGACAATGC+TGG 0.561250 1_3:-24099162 Msa0110950:CDS
TGTAACCCCACACAAACGCA+TGG 0.564282 1_3:-24100830 Msa0110950:CDS
GTATATATTAGGTTGCAGCT+TGG 0.565993 1_3:-24100864 Msa0110950:intron
CCACCATTGACTCGTACGAT+GGG 0.567655 1_3:-24105313 Msa0110950:CDS
TGAAGCTTTGACGTTGCGCA+AGG 0.568844 1_3:-24104922 Msa0110950:CDS
AAAAGAGCCAACATGGAATG+AGG 0.569478 1_3:-24101921 Msa0110950:CDS
GCAGGACAAAAGAGCCAACA+TGG 0.570719 1_3:-24101928 Msa0110950:intron
CCATGAATGAGATTCGGATG+AGG 0.573465 1_3:-24104893 Msa0110950:CDS
TGGGCGCTACGTTCAAGGAA+GGG 0.573731 1_3:-24104463 Msa0110950:CDS
CCCGAAGCGAGGTCGTGGAA+AGG 0.574460 1_3:-24104388 Msa0110950:CDS
GTCCTATGGGGAGTGAAGCA+GGG 0.575294 1_3:-24104581 Msa0110950:CDS
TAGCTCTTCAAGGATTCAGT+GGG 0.575533 1_3:+24105044 None:intergenic
CCATCGTACGAGTCAATGGT+GGG 0.577280 1_3:+24105314 None:intergenic
CCTGAGAAATTAAAGTGGGA+TGG 0.577884 1_3:-24099605 Msa0110950:CDS
AATTTGTAGAATATGCATTC+GGG 0.578887 1_3:-24099928 Msa0110950:CDS
TTTCCAAAATGAAAGATGAA+AGG 0.579507 1_3:-24099349 Msa0110950:CDS
AGGCGTGAGGTCGATACTGC+TGG 0.580337 1_3:-24103062 Msa0110950:intron
GAAGATTCTACCGAAGGAGT+AGG 0.580645 1_3:-24099299 Msa0110950:CDS
ATAGGACGAGGGTTTGGAGG+CGG 0.581874 1_3:+24104597 None:intergenic
GTCGGGGATGAAACCTCTAC+AGG 0.582510 1_3:-24101876 Msa0110950:intron
AAATTTCACTCCTCTCAACA+AGG 0.582580 1_3:-24104670 Msa0110950:CDS
CGCTACGTTCAAGGAAGGGG+AGG 0.583546 1_3:-24104459 Msa0110950:CDS
GTAACCCCACACAAACGCAT+GGG 0.583729 1_3:-24100829 Msa0110950:CDS
CCTTGAAGAGCTATCTGGCT+CGG 0.584559 1_3:-24105034 Msa0110950:CDS
GAAATACTGGTGGAGTTGGA+AGG 0.584587 1_3:-24100549 Msa0110950:CDS
TTGGGCGCTACGTTCAAGGA+AGG 0.587044 1_3:-24104464 Msa0110950:CDS
ACCAAAGAAGATTCTACCGA+AGG 0.588304 1_3:-24099305 Msa0110950:CDS
CCAACTAGCCCAGCTGCTCG+AGG 0.589631 1_3:-24105627 None:intergenic
AGGTGGAGATTTCAAGCAAG+AGG 0.590239 1_3:-24097251 Msa0110950:CDS
AGGCAGAGACCGGGCTAACG+AGG 0.593156 1_3:-24104811 Msa0110950:CDS
AGAGACACGAGGCAGAGACC+GGG 0.596583 1_3:-24104820 Msa0110950:CDS
AACCAATCTTGCAATATGGT+GGG 0.597003 1_3:-24104237 Msa0110950:CDS
CTGTTCCTGAGAAATTAAAG+TGG 0.597016 1_3:-24099610 Msa0110950:CDS
ACGCATGGGGAATGCAGTCG+TGG 0.599756 1_3:-24100815 Msa0110950:CDS
GCTAAAAGCAATATCAAATG+GGG 0.600045 1_3:-24102366 Msa0110950:CDS
GTGAACTCCTCATTCCATGT+TGG 0.601907 1_3:+24101914 None:intergenic
GACTGAATTGCAGCAATGGA+AGG 0.602286 1_3:+24099461 None:intergenic
CGGCCAGAAGAAGATATTCA+CGG 0.602662 1_3:-24104263 Msa0110950:CDS
GATTTGGAATGGCTTTGTGA+TGG 0.603127 1_3:-24100793 Msa0110950:intron
CTGAATCCTGAAAGGATAGG+TGG 0.603273 1_3:-24097268 Msa0110950:CDS
GGGAACAAGTGATCCGTATG+TGG 0.604184 1_3:-24102412 Msa0110950:CDS
AGCATCACCACAAGCTAGTG+AGG 0.604248 1_3:-24099711 Msa0110950:CDS
GGCGGCCTCCTCGATCCAGT+GGG 0.604602 1_3:+24104733 None:intergenic
AAGAGCTCAAATACTCAAAG+AGG 0.605037 1_3:-24104646 Msa0110950:CDS
TGGCTCTGTCACCATGAGAG+TGG 0.605619 1_3:+24105001 None:intergenic
AACTCTTCCTCACTAGCTTG+TGG 0.607610 1_3:+24099704 None:intergenic
GGAGTGATGAAAAGGCTAGG+GGG 0.608584 1_3:-24104777 Msa0110950:CDS
TCAGATGGAGGCCAGAGAGA+GGG 0.608757 1_3:-24105468 Msa0110950:CDS
CTTTCCACGACCTCGCTTCG+GGG 0.609626 1_3:+24104389 None:intergenic
ATTCTCGACGGAAATACAAA+CGG 0.610847 1_3:-24105363 Msa0110950:CDS
CCCTATCAGAAGGAACCCAT+GGG 0.611479 1_3:-24104697 Msa0110950:CDS
AATTCAGTCTTCACTTCCAG+AGG 0.612033 1_3:-24099447 Msa0110950:CDS
CTCCAAACCCTCGTCCTATG+GGG 0.612681 1_3:-24104593 Msa0110950:CDS
CTTCACTCCCCATAGGACGA+GGG 0.612855 1_3:+24104586 None:intergenic
TCCATAGGCTGAATCCTGAA+AGG 0.612958 1_3:-24097276 Msa0110950:intron
CATGACAAAGAAGCTGAAGG+AGG 0.615363 1_3:-24104357 Msa0110950:CDS
TGTGAATACCATCGCACCCA+AGG 0.616764 1_3:-24104552 Msa0110950:CDS
ATTGAAAAGTTGATACAAGA+GGG 0.618033 1_3:-24104492 Msa0110950:CDS
GGAGAAGCACATTGAAGCCG+AGG 0.618433 1_3:-24104868 Msa0110950:CDS
CATTGAAAAGTTGATACAAG+AGG 0.618803 1_3:-24104493 Msa0110950:CDS
AGCGTGAAGTCCCTATCAGA+AGG 0.619153 1_3:-24104707 Msa0110950:CDS
CATGGTGACAGAGCCAAATG+AGG 0.619202 1_3:-24104994 Msa0110950:CDS
ACAAAACACCTGTGTGTCAG+TGG 0.621108 1_3:+24099070 None:intergenic
CTTCATGACAAAGAAGCTGA+AGG 0.621633 1_3:-24104360 Msa0110950:CDS
TTGAAGCCGAGGAGATAACA+AGG 0.622125 1_3:-24104857 Msa0110950:CDS
TGTTTCAGGAAAACTTGGGT+AGG 0.622383 1_3:-24103082 Msa0110950:intron
AACTGCTGAAAGTGCCATGG+AGG 0.622432 1_3:-24099177 Msa0110950:CDS
ATAGCTCTTCAAGGATTCAG+TGG 0.623450 1_3:+24105043 None:intergenic
TGTTCCTGAGAAATTAAAGT+GGG 0.623964 1_3:-24099609 Msa0110950:CDS
AGGAGTGATGAAAAGGCTAG+GGG 0.624319 1_3:-24104778 Msa0110950:CDS
ATGACAAAGAAGCTGAAGGA+GGG 0.626118 1_3:-24104356 Msa0110950:CDS
AACCCTGCTTCACTCCCCAT+AGG 0.626379 1_3:+24104579 None:intergenic
TGTCAAACAAATCTGCCAGT+AGG 0.628572 1_3:+24105078 None:intergenic
CAGTCTGAGAACCCATCTGT+AGG 0.630166 1_3:+24102388 None:intergenic
ATATCGGATAATAAAACAAG+TGG 0.632838 1_3:-24099488 Msa0110950:CDS
AAAGTTGAGACGTGACTATG+TGG 0.633124 1_3:+24105281 None:intergenic
GCTAACGAGGATCGTCGGGA+AGG 0.634879 1_3:-24104798 Msa0110950:CDS
AAAGGCGTTCTTCTGAAGAG+AGG 0.635261 1_3:-24099331 Msa0110950:CDS
TAATGCATCCACTGACACAC+AGG 0.635313 1_3:-24099078 Msa0110950:intron
GGAAAACTTGGGTAGGCGTG+AGG 0.636185 1_3:-24103075 Msa0110950:CDS
CAAACGCAGATGTTCATAAG+CGG 0.638226 1_3:-24105257 Msa0110950:CDS
AGAGGTGTCCCACTGGATCG+AGG 0.639039 1_3:-24104741 Msa0110950:CDS
GTGGGTTCCCGAAAGTGACG+AGG 0.639650 1_3:+24105332 None:intergenic
ATTCCCCATGCGTTTGTGTG+GGG 0.641554 1_3:+24100825 None:intergenic
CGAGCTCAGACATCAGATGG+AGG 0.644555 1_3:-24105480 Msa0110950:CDS
CGAAAGGAACAACAGAGGCA+CGG 0.647499 1_3:-24104331 Msa0110950:CDS
TTCTAGTGAACAAAGAAACA+TGG 0.651902 1_3:-24099783 Msa0110950:CDS
AGGCTGAATCCTGAAAGGAT+AGG 0.652181 1_3:-24097271 Msa0110950:CDS
AACGTGTTTCAGGAAAACTT+GGG 0.654228 1_3:-24103086 Msa0110950:intron
GAATGAGATTCGGATGAGGG+CGG 0.654650 1_3:-24104889 Msa0110950:CDS
AGTGTTCCAACCATTCTCGA+CGG 0.656040 1_3:-24105375 Msa0110950:CDS
TAGCACATAAGTGGATAGCA+GGG 0.658075 1_3:-24105184 Msa0110950:CDS
TCAAGTCGATCCCCGAAGCG+AGG 0.660469 1_3:-24104399 Msa0110950:CDS
AGATTAGTGATTGCATTTCG+GGG 0.663758 1_3:-24098881 Msa0110950:CDS
TAACCCCACACAAACGCATG+GGG 0.663942 1_3:-24100828 Msa0110950:CDS
AATTTCACTCCTCTCAACAA+GGG 0.674701 1_3:-24104669 Msa0110950:CDS
TGGGTTCCCGAAAGTGACGA+GGG 0.674933 1_3:+24105333 None:intergenic
TATCAGAAGGAACCCATGGG+AGG 0.675531 1_3:-24104694 Msa0110950:CDS
GCAATGGAAGGACTTAGTAA+CGG 0.676596 1_3:-24098762 Msa0110950:CDS
CTAAAAGCAATATCAAATGG+GGG 0.678228 1_3:-24102365 Msa0110950:intron
AGATACGCATGAAATACTGG+TGG 0.687029 1_3:-24100559 Msa0110950:CDS
ACGGTCAACACCATAGCGGG+AGG 0.689168 1_3:-24104312 Msa0110950:CDS
CTCGACGGAAATACAAACGG+TGG 0.705185 1_3:-24105360 Msa0110950:CDS
GGGCACGAAAGGAACAACAG+AGG 0.710071 1_3:-24104336 Msa0110950:CDS
TAGGGACTTCACGCTCTGGG+CGG 0.711264 1_3:+24104715 None:intergenic
ACTTGGATGACCTAGTGAAG+TGG 0.714926 1_3:+24099139 None:intergenic
GGTGTCCCACTGGATCGAGG+AGG 0.715697 1_3:-24104738 Msa0110950:CDS
TGAAGCCGAGGAGATAACAA+GGG 0.718631 1_3:-24104856 Msa0110950:CDS
AAAGGATCTAGAGAGACACG+AGG 0.742449 1_3:-24104831 Msa0110950:CDS
AGGCACGGTCAACACCATAG+CGG 0.745240 1_3:-24104316 Msa0110950:CDS
GAATTGGGCAACGAAACGAG+TGG 0.760459 1_3:+24105124 None:intergenic
AAGTTGAGACGTGACTATGT+GGG 0.775738 1_3:+24105282 None:intergenic
AGCTCTTCAAGGATTCAGTG+GGG 0.776995 1_3:+24105045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAAAGTTTGTTT+TGG - chr1_3:24098970-24098989 Msa0110950:intron 10.0%
!!! TTTTTTTGTTTTTCTATTTT+TGG - chr1_3:24099184-24099203 Msa0110950:CDS 10.0%
!!! ATTATTAATTTATTTTTGAG+AGG - chr1_3:24099387-24099406 Msa0110950:CDS 10.0%
!! ATTTATATAAAATCATTTGA+TGG - chr1_3:24100901-24100920 Msa0110950:intron 10.0%
!!! GTAAAATAATTTTGAATTTT+AGG - chr1_3:24102762-24102781 Msa0110950:intron 10.0%
!!! CTTTTATTTAATTTACAATT+GGG + chr1_3:24104809-24104828 None:intergenic 10.0%
!!! ACTTTTATTTAATTTACAAT+TGG + chr1_3:24104810-24104829 None:intergenic 10.0%
!!! ATTAATATAATTTGTTTACA+AGG + chr1_3:24105139-24105158 None:intergenic 10.0%
!! TAAAAAACAACAGAAATAAA+AGG + chr1_3:24100408-24100427 None:intergenic 15.0%
!! AAATGAAATAAAAAATCTGA+CGG - chr1_3:24101917-24101936 Msa0110950:CDS 15.0%
!! AATGTTAAATTTCTAACAAT+TGG - chr1_3:24101962-24101981 Msa0110950:intron 15.0%
!! ATTAATTAATAAATTCTCCA+AGG - chr1_3:24102578-24102597 Msa0110950:intron 15.0%
!! TTAATTAATAAATTCTCCAA+GGG - chr1_3:24102579-24102598 Msa0110950:intron 15.0%
!!! ATTTATTTTAAAAAGGAATG+AGG - chr1_3:24104533-24104552 Msa0110950:CDS 15.0%
!! TCAAAATCATAACTAATTTA+GGG - chr1_3:24105488-24105507 Msa0110950:CDS 15.0%
!! ATAACAAAAATATCCTCATT+TGG + chr1_3:24097873-24097892 None:intergenic 20.0%
!!! AAATGAGGATATTTTTGTTA+TGG - chr1_3:24097872-24097891 Msa0110950:intron 20.0%
!!! AAACTATTTTTGAGATTTGA+TGG - chr1_3:24098874-24098893 Msa0110950:CDS 20.0%
!! AATTAATGAGAAAATCAATG+AGG + chr1_3:24098952-24098971 None:intergenic 20.0%
!! ATCTCTAATCATAGTTTAAT+TGG + chr1_3:24099070-24099089 None:intergenic 20.0%
!!! TTTTGTTTTTCTATTTTTGG+AGG - chr1_3:24099187-24099206 Msa0110950:CDS 20.0%
!! AAAAAATACACGAGTATTTA+GGG + chr1_3:24099227-24099246 None:intergenic 20.0%
!! AAAAAAATACACGAGTATTT+AGG + chr1_3:24099228-24099247 None:intergenic 20.0%
!! TAATGGGAAGTTAAAATAAA+AGG + chr1_3:24099744-24099763 None:intergenic 20.0%
!!! AGATTTTTTTGAATATATGC+AGG - chr1_3:24100156-24100175 Msa0110950:intron 20.0%
!!! GATTTTTTTGAATATATGCA+GGG - chr1_3:24100157-24100176 Msa0110950:intron 20.0%
!!! TTTTTTCGTGAAATTTATGA+TGG - chr1_3:24100182-24100201 Msa0110950:intron 20.0%
!!! TTTTTCGTGAAATTTATGAT+GGG - chr1_3:24100183-24100202 Msa0110950:intron 20.0%
!! CATAAATTTATTTACTGTAC+TGG - chr1_3:24100274-24100293 Msa0110950:intron 20.0%
!!! TTGTTTTTTACTTTCATTGT+AGG - chr1_3:24100418-24100437 Msa0110950:intron 20.0%
!!! TGTTTTTTACTTTCATTGTA+GGG - chr1_3:24100419-24100438 Msa0110950:intron 20.0%
!! GAAATAAGAATGATTTCATT+CGG - chr1_3:24100749-24100768 Msa0110950:intron 20.0%
!!! AGTTCACTTTTAATTTTAAG+CGG - chr1_3:24100953-24100972 Msa0110950:intron 20.0%
!! ATACAAAATGAATGATTACA+AGG + chr1_3:24101789-24101808 None:intergenic 20.0%
!!! TTAAACTGTTTTCTCTAAAA+AGG - chr1_3:24102544-24102563 Msa0110950:intron 20.0%
!!! AAATTGATGATGAAAAAAAG+TGG - chr1_3:24102806-24102825 Msa0110950:intron 20.0%
!!! TTTAAAAAGTCTGAAACAAA+AGG + chr1_3:24102841-24102860 None:intergenic 20.0%
!! GAAGATATTTATATTGAATC+TGG - chr1_3:24103315-24103334 Msa0110950:intron 20.0%
!!! GAAGGGAATTTATTTTAAAA+AGG - chr1_3:24104526-24104545 Msa0110950:CDS 20.0%
!! TTATCGTATCATTAATTGTA+GGG + chr1_3:24104762-24104781 None:intergenic 20.0%
!! ACAAATTATATTAATGCATG+TGG - chr1_3:24105144-24105163 Msa0110950:CDS 20.0%
!! GGTCTAATAATTAAAAAAGT+GGG - chr1_3:24105215-24105234 Msa0110950:CDS 20.0%
!!! CAAAATACTTTCTAGTTTTA+AGG + chr1_3:24105260-24105279 None:intergenic 20.0%
!!! CTTAAAACTAGAAAGTATTT+TGG - chr1_3:24105258-24105277 Msa0110950:CDS 20.0%
!!! AAGTATTTTGGAAATTCTTT+TGG - chr1_3:24105270-24105289 Msa0110950:CDS 20.0%
!!! GAAATTCTTTTGGAATAAAA+GGG - chr1_3:24105280-24105299 Msa0110950:CDS 20.0%
!!! AAATTCTTTTGGAATAAAAG+GGG - chr1_3:24105281-24105300 Msa0110950:CDS 20.0%
!! CTCAAAATCATAACTAATTT+AGG - chr1_3:24105487-24105506 Msa0110950:CDS 20.0%
!!! ATTGAAAAGTTGATACAAGA+GGG - chr1_3:24098359-24098378 Msa0110950:intron 25.0%
!! TTTACCTTCAAAGATTTTGA+AGG - chr1_3:24098671-24098690 Msa0110950:intron 25.0%
! ATGGAATACAAGATGTTTAT+TGG - chr1_3:24098893-24098912 Msa0110950:CDS 25.0%
! ACTGCAAACATTTCTTAATT+TGG + chr1_3:24099142-24099161 None:intergenic 25.0%
! TTAAAATACAAAACCCACTT+GGG + chr1_3:24099364-24099383 None:intergenic 25.0%
!! TTTAAAATACAAAACCCACT+TGG + chr1_3:24099365-24099384 None:intergenic 25.0%
! GTATGTTGAAATGTTGAAAA+TGG - chr1_3:24099477-24099496 Msa0110950:CDS 25.0%
! TGTAATTTACTAACAAGTTC+AGG + chr1_3:24099537-24099556 None:intergenic 25.0%
!!! ATTATTTTAATGTGACACTG+AGG - chr1_3:24099676-24099695 Msa0110950:CDS 25.0%
! TTTCAAGATTCAACAAAATC+AGG + chr1_3:24100045-24100064 None:intergenic 25.0%
! CTCTTCATAAAGTTGAAAAA+AGG - chr1_3:24100209-24100228 Msa0110950:intron 25.0%
!! TGATTAGCTAAAAATGGAAA+GGG + chr1_3:24100367-24100386 None:intergenic 25.0%
!! TTGATTAGCTAAAAATGGAA+AGG + chr1_3:24100368-24100387 None:intergenic 25.0%
!!! TTGTGTTGATTAGCTAAAAA+TGG + chr1_3:24100373-24100392 None:intergenic 25.0%
! TGCTAAAAGCAATATCAAAT+GGG - chr1_3:24100484-24100503 Msa0110950:intron 25.0%
!!! AATTCATTTTAACCATTACC+TGG + chr1_3:24100564-24100583 None:intergenic 25.0%
!! TTTTTACAGTTTGACTGTTA+TGG - chr1_3:24100625-24100644 Msa0110950:intron 25.0%
!! ATATAAAATCATTTGATGGC+AGG - chr1_3:24100905-24100924 Msa0110950:intron 25.0%
!!! TGGAAAAATGTATTTTAAGC+TGG - chr1_3:24101208-24101227 Msa0110950:intron 25.0%
! GTCTTAATAACCAATCAATT+AGG + chr1_3:24101263-24101282 None:intergenic 25.0%
! AACAATTGGCAGTATATATT+AGG - chr1_3:24101976-24101995 Msa0110950:intron 25.0%
! TAGATTCTATAACACTTCTT+TGG + chr1_3:24102178-24102197 None:intergenic 25.0%
! ATTATATGGTCAAAAGAATG+TGG + chr1_3:24102258-24102277 None:intergenic 25.0%
! CCTACAACAAAAACATTATA+TGG + chr1_3:24102272-24102291 None:intergenic 25.0%
!!! CCATATAATGTTTTTGTTGT+AGG - chr1_3:24102269-24102288 Msa0110950:intron 25.0%
! TAATATGGGGAAAAAATTGT+TGG - chr1_3:24102408-24102427 Msa0110950:CDS 25.0%
! AAATGTACATGAAGAACAAA+TGG + chr1_3:24102469-24102488 None:intergenic 25.0%
! TTCATCATCAATTTCTTCAA+AGG + chr1_3:24102800-24102819 None:intergenic 25.0%
!!! TCAGACTTTTTAAAGAATAC+TGG - chr1_3:24102847-24102866 Msa0110950:intron 25.0%
! CAATTTGTAGAATATGCATT+CGG - chr1_3:24102922-24102941 Msa0110950:intron 25.0%
! AATTTGTAGAATATGCATTC+GGG - chr1_3:24102923-24102942 Msa0110950:intron 25.0%
!! AAAGTCTTTTAACAATGAGA+AGG - chr1_3:24102951-24102970 Msa0110950:intron 25.0%
! AAATATGATATTGAAAGCTC+TGG - chr1_3:24103000-24103019 Msa0110950:intron 25.0%
! AATATGATATTGAAAGCTCT+GGG - chr1_3:24103001-24103020 Msa0110950:intron 25.0%
! ATATCGGATAATAAAACAAG+TGG - chr1_3:24103363-24103382 Msa0110950:intron 25.0%
!! AAGCAAACTGAATCAATTTT+AGG - chr1_3:24103453-24103472 Msa0110950:intron 25.0%
! TTTCCAAAATGAAAGATGAA+AGG - chr1_3:24103502-24103521 Msa0110950:intron 25.0%
! ACAATTGTCAAATTCATAAG+AGG + chr1_3:24103833-24103852 None:intergenic 25.0%
! GATTTAAAAATATATCGCAG+AGG + chr1_3:24104210-24104229 None:intergenic 25.0%
!! TTTTAAATCTTGTGAGATAC+CGG - chr1_3:24104221-24104240 Msa0110950:CDS 25.0%
! CTAATTTCACAGAAATTACA+TGG + chr1_3:24104370-24104389 None:intergenic 25.0%
! CAACTGTAAAACAAAATAAC+CGG - chr1_3:24104492-24104511 Msa0110950:CDS 25.0%
! AACTTATCATCATTGTGAAT+AGG - chr1_3:24104613-24104632 Msa0110950:CDS 25.0%
! AAGAATCTCTATCAAATTGT+AGG - chr1_3:24104676-24104695 Msa0110950:CDS 25.0%
! AGAATCTCTATCAAATTGTA+GGG - chr1_3:24104677-24104696 Msa0110950:CDS 25.0%
! TATCGTATCATTAATTGTAG+GGG + chr1_3:24104761-24104780 None:intergenic 25.0%
! CTTATCGTATCATTAATTGT+AGG + chr1_3:24104763-24104782 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_3:24104895-24104914 None:intergenic 25.0%
! GGACAAAGAAATATGAAAAA+GGG - chr1_3:24105194-24105213 Msa0110950:CDS 25.0%
! GGGTCTAATAATTAAAAAAG+TGG - chr1_3:24105214-24105233 Msa0110950:CDS 25.0%
!!! GGAAATTCTTTTGGAATAAA+AGG - chr1_3:24105279-24105298 Msa0110950:CDS 25.0%
! CAGAACAGAATATAAAAACA+TGG + chr1_3:24105379-24105398 None:intergenic 25.0%
! AATCATAGCAAAGTTAGTTA+TGG + chr1_3:24105555-24105574 None:intergenic 25.0%
! TTAAGCTGCAAAATTTTTGC+TGG - chr1_3:24097630-24097649 Msa0110950:intron 30.0%
! TAAGCTGCAAAATTTTTGCT+GGG - chr1_3:24097631-24097650 Msa0110950:intron 30.0%
!! TTTTGTTATGGCATTTGAGA+AGG - chr1_3:24097884-24097903 Msa0110950:intron 30.0%
! TTTGTTATGGCATTTGAGAA+GGG - chr1_3:24097885-24097904 Msa0110950:intron 30.0%
!! CATTGAAAAGTTGATACAAG+AGG - chr1_3:24098358-24098377 Msa0110950:intron 30.0%
TGAAGGTAAAAGCTAATTGA+GGG + chr1_3:24098661-24098680 None:intergenic 30.0%
TTGAAGGTAAAAGCTAATTG+AGG + chr1_3:24098662-24098681 None:intergenic 30.0%
!! GTTTTGACACATTGTATTGT+GGG - chr1_3:24098992-24099011 Msa0110950:intron 30.0%
! TTTTGACACATTGTATTGTG+GGG - chr1_3:24098993-24099012 Msa0110950:intron 30.0%
ATGTTGAGTTAAGTAAAGTC+TGG - chr1_3:24099041-24099060 Msa0110950:intron 30.0%
! TTTCTTAATTTGGATGCAAG+TGG + chr1_3:24099132-24099151 None:intergenic 30.0%
! GCTAGTTTAGTTTCTTCAAA+AGG + chr1_3:24099255-24099274 None:intergenic 30.0%
!!! TTATTTTTGAGAGGTTGACA+AGG - chr1_3:24099396-24099415 Msa0110950:CDS 30.0%
!! TATTTTTGAGAGGTTGACAA+GGG - chr1_3:24099397-24099416 Msa0110950:CDS 30.0%
!! ATGGTAATGTGATGTGTTTT+TGG - chr1_3:24099496-24099515 Msa0110950:CDS 30.0%
TTCCTGAAACACGTTATAAT+GGG + chr1_3:24099760-24099779 None:intergenic 30.0%
TTTCCTGAAACACGTTATAA+TGG + chr1_3:24099761-24099780 None:intergenic 30.0%
!! ATTTTGATAGAACCCAATGA+CGG - chr1_3:24099916-24099935 Msa0110950:CDS 30.0%
! GTAGTTTGACTTCATTTAGA+TGG - chr1_3:24099951-24099970 Msa0110950:CDS 30.0%
GTTTGTATTACAGATGAGTT+CGG - chr1_3:24100002-24100021 Msa0110950:CDS 30.0%
CTGCTAAAAGCAATATCAAA+TGG - chr1_3:24100483-24100502 Msa0110950:intron 30.0%
GCTAAAAGCAATATCAAATG+GGG - chr1_3:24100485-24100504 Msa0110950:intron 30.0%
CTAAAAGCAATATCAAATGG+GGG - chr1_3:24100486-24100505 Msa0110950:intron 30.0%
TAGGCTTGGAATAAGTAAAA+TGG + chr1_3:24100541-24100560 None:intergenic 30.0%
ACTGAAGATATTTGTTTCAC+AGG + chr1_3:24100800-24100819 None:intergenic 30.0%
ATTGTAACTGTAAGTACACT+TGG - chr1_3:24100875-24100894 Msa0110950:intron 30.0%
!!! CACTTTTAATTTTAAGCGGT+CGG - chr1_3:24100957-24100976 Msa0110950:intron 30.0%
!!! ACTTTTAATTTTAAGCGGTC+GGG - chr1_3:24100958-24100977 Msa0110950:intron 30.0%
CACACTTATGAGAATCATTT+CGG - chr1_3:24101100-24101119 Msa0110950:intron 30.0%
AATTATAGATGCATGAGAAG+TGG - chr1_3:24101132-24101151 Msa0110950:intron 30.0%
ATTATAGATGCATGAGAAGT+GGG - chr1_3:24101133-24101152 Msa0110950:intron 30.0%
!! AATGTATTTTAAGCTGGTCA+AGG - chr1_3:24101214-24101233 Msa0110950:intron 30.0%
AGTGATCATTCCTAATTGAT+TGG - chr1_3:24101250-24101269 Msa0110950:intron 30.0%
!! TCATGAGTTGATATTTACTG+AGG - chr1_3:24101439-24101458 Msa0110950:intron 30.0%
!! GAAGTTGTTTTGCAATGATT+TGG - chr1_3:24101479-24101498 Msa0110950:intron 30.0%
!! AGTGTTAGAGTTCTAGATAT+TGG - chr1_3:24101724-24101743 Msa0110950:intron 30.0%
!! GTGTTAGAGTTCTAGATATT+GGG - chr1_3:24101725-24101744 Msa0110950:intron 30.0%
! TATATATTAGGTTGCAGCTT+GGG - chr1_3:24101988-24102007 Msa0110950:intron 30.0%
CTCTTACTGAATAAAATCAC+AGG + chr1_3:24102201-24102220 None:intergenic 30.0%
TGTTCTTCATGTACATTTAG+TGG - chr1_3:24102471-24102490 Msa0110950:intron 30.0%
GAGAAAACAGTTTAATGCAA+GGG + chr1_3:24102539-24102558 None:intergenic 30.0%
AGAGAAAACAGTTTAATGCA+AGG + chr1_3:24102540-24102559 None:intergenic 30.0%
ATTCACTTTATCATTGACAG+TGG - chr1_3:24102653-24102672 Msa0110950:intron 30.0%
GCGACTAATTATGCTTAATT+TGG - chr1_3:24102675-24102694 Msa0110950:intron 30.0%
ACTACTTACGACTCATTTAA+AGG + chr1_3:24102734-24102753 None:intergenic 30.0%
!! TTGATGATGAAAAAAAGTGG+TGG - chr1_3:24102809-24102828 Msa0110950:intron 30.0%
CGAATGCATATTCTACAAAT+TGG + chr1_3:24102924-24102943 None:intergenic 30.0%
GGGAAATCAAATAATGATAC+TGG - chr1_3:24103021-24103040 Msa0110950:intron 30.0%
TTCTAGTGAACAAAGAAACA+TGG - chr1_3:24103068-24103087 Msa0110950:CDS 30.0%
! AGTTGTCAAATCAACGTTTT+TGG - chr1_3:24103166-24103185 Msa0110950:intron 30.0%
TGTTCCTGAGAAATTAAAGT+GGG - chr1_3:24103242-24103261 Msa0110950:intron 30.0%
!! ATTGCGAACCAATTTTGTTT+AGG + chr1_3:24103281-24103300 None:intergenic 30.0%
! CAAACTGAATCAATTTTAGG+AGG - chr1_3:24103456-24103475 Msa0110950:intron 30.0%
!! TTTCATTTTGGAAACTGTTG+CGG + chr1_3:24103496-24103515 None:intergenic 30.0%
TCTTAACCATTAGAACTTTC+AGG - chr1_3:24103918-24103937 Msa0110950:intron 30.0%
GAAGATTAGTGATTGCATTT+CGG - chr1_3:24103968-24103987 Msa0110950:intron 30.0%
AAGATTAGTGATTGCATTTC+GGG - chr1_3:24103969-24103988 Msa0110950:intron 30.0%
!! TATCTTTAAGACAAACCAGA+TGG + chr1_3:24104047-24104066 None:intergenic 30.0%
!!! CTTTTATTTTTCAGACGCAA+TGG - chr1_3:24104073-24104092 Msa0110950:intron 30.0%
CTACTAAACAAGTCATAACT+AGG + chr1_3:24104154-24104173 None:intergenic 30.0%
AGTCAAATATCATACAAGTC+CGG + chr1_3:24104243-24104262 None:intergenic 30.0%
TAAGTAGTTGCTAATGAGAT+TGG - chr1_3:24104413-24104432 Msa0110950:CDS 30.0%
ATGAGGAAAAACGTAAAATG+CGG - chr1_3:24104550-24104569 Msa0110950:CDS 30.0%
GATAGAGATTCTTGTAACAA+GGG + chr1_3:24104669-24104688 None:intergenic 30.0%
TGATAGAGATTCTTGTAACA+AGG + chr1_3:24104670-24104689 None:intergenic 30.0%
TCATTAATTGTAGGGGAATA+TGG + chr1_3:24104754-24104773 None:intergenic 30.0%
ATGATACGATAAGAGAGAAA+AGG - chr1_3:24104770-24104789 Msa0110950:CDS 30.0%
AAAGAAATTATTACTCCCTC+CGG - chr1_3:24104838-24104857 Msa0110950:CDS 30.0%
CTTATGCTTATAATAGTGAC+CGG + chr1_3:24104860-24104879 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+TGG - chr1_3:24104968-24104987 Msa0110950:CDS 30.0%
GGGACAAAGAAATATGAAAA+AGG - chr1_3:24105193-24105212 Msa0110950:CDS 30.0%
! TGTGGTGATATTTCTTTTCT+TGG + chr1_3:24105309-24105328 None:intergenic 30.0%
GAAATATCACCACATAAGAA+AGG - chr1_3:24105315-24105334 Msa0110950:CDS 30.0%
TATAGCTAGAATTCTCTATG+GGG + chr1_3:24105349-24105368 None:intergenic 30.0%
CTATAGCTAGAATTCTCTAT+GGG + chr1_3:24105350-24105369 None:intergenic 30.0%
CTTTCTTCCAACTTAGTATA+TGG - chr1_3:24105413-24105432 Msa0110950:CDS 30.0%
!! CACAAGAGGATCATTTTTAA+GGG + chr1_3:24105464-24105483 None:intergenic 30.0%
! AACTTTGCTATGATTTCCAT+AGG - chr1_3:24105560-24105579 Msa0110950:CDS 30.0%
ATTCTCGACGGAAATACAAA+CGG - chr1_3:24097488-24097507 Msa0110950:intron 35.0%
CTCAAAGTTTGTGATTGATC+TGG + chr1_3:24097700-24097719 None:intergenic 35.0%
CAGATCAATCACAAACTTTG+AGG - chr1_3:24097698-24097717 Msa0110950:intron 35.0%
! AATCACAAACTTTGAGGACT+TGG - chr1_3:24097704-24097723 Msa0110950:intron 35.0%
CACATTCCATGAATGAGATT+CGG - chr1_3:24097952-24097971 Msa0110950:intron 35.0%
AAATTTCACTCCTCTCAACA+AGG - chr1_3:24098181-24098200 Msa0110950:intron 35.0%
AATTTCACTCCTCTCAACAA+GGG - chr1_3:24098182-24098201 Msa0110950:intron 35.0%
AAGAGCTCAAATACTCAAAG+AGG - chr1_3:24098205-24098224 Msa0110950:intron 35.0%
! CTTTTCAATGTGCATTCGAA+GGG + chr1_3:24098348-24098367 None:intergenic 35.0%
! ACTTTTCAATGTGCATTCGA+AGG + chr1_3:24098349-24098368 None:intergenic 35.0%
AACCAATCTTGCAATATGGT+GGG - chr1_3:24098614-24098633 Msa0110950:intron 35.0%
CAGTCCTTCAAAATCTTTGA+AGG + chr1_3:24098678-24098697 None:intergenic 35.0%
ATGAGAAAATCAATGAGGCA+TGG + chr1_3:24098947-24098966 None:intergenic 35.0%
!! GGTTTTGACACATTGTATTG+TGG - chr1_3:24098991-24099010 Msa0110950:intron 35.0%
AGATCAAACTCGATTACCAA+TGG - chr1_3:24099086-24099105 Msa0110950:CDS 35.0%
!!! AGCAAGCAACATACTGATTT+TGG + chr1_3:24099432-24099451 None:intergenic 35.0%
!!! GTAATGTGATGTGTTTTTGG+AGG - chr1_3:24099499-24099518 Msa0110950:CDS 35.0%
TTCCCATTATAACGTGTTTC+AGG - chr1_3:24099755-24099774 Msa0110950:CDS 35.0%
TAACGTGTTTCAGGAAAACT+TGG - chr1_3:24099764-24099783 Msa0110950:CDS 35.0%
AACGTGTTTCAGGAAAACTT+GGG - chr1_3:24099765-24099784 Msa0110950:CDS 35.0%
CTCAGAAAGATAGATTGTCT+TGG + chr1_3:24099817-24099836 None:intergenic 35.0%
TGACAAAGATAACAGCTCTA+AGG + chr1_3:24099866-24099885 None:intergenic 35.0%
ATAGATCAATTGCCGTCATT+GGG + chr1_3:24099931-24099950 None:intergenic 35.0%
GGGAAAATAACTCAGTTGTA+TGG + chr1_3:24100347-24100366 None:intergenic 35.0%
AGCTAATCAACACAACTACT+TGG - chr1_3:24100378-24100397 Msa0110950:intron 35.0%
!! CATTTTAACCATTACCTGGT+AGG + chr1_3:24100560-24100579 None:intergenic 35.0%
!!! CTTTTAATTTTAAGCGGTCG+GGG - chr1_3:24100959-24100978 Msa0110950:intron 35.0%
CGAAATGATTCTCATAAGTG+TGG + chr1_3:24101102-24101121 None:intergenic 35.0%
CACTTCCATGCGTATTTAAA+AGG + chr1_3:24101161-24101180 None:intergenic 35.0%
AATACGCATGGAAGTGATAT+TGG - chr1_3:24101165-24101184 Msa0110950:intron 35.0%
AATTTGCATGCTGTGATACA+TGG - chr1_3:24101188-24101207 Msa0110950:intron 35.0%
TTGGTTATTAAGACGCTGAT+TGG - chr1_3:24101269-24101288 Msa0110950:intron 35.0%
CTTATAGACAATCTACCTCA+AGG - chr1_3:24101304-24101323 Msa0110950:intron 35.0%
TACAAGTAAACAGTACCTTG+AGG + chr1_3:24101322-24101341 None:intergenic 35.0%
!! TCAAGGTACTGTTTACTTGT+AGG - chr1_3:24101321-24101340 Msa0110950:intron 35.0%
!! CAAGGTACTGTTTACTTGTA+GGG - chr1_3:24101322-24101341 Msa0110950:intron 35.0%
TTGATATTTACTGAGGACTG+AGG - chr1_3:24101446-24101465 Msa0110950:intron 35.0%
TCTTCATATTGCCTCTAAAC+CGG - chr1_3:24101506-24101525 Msa0110950:intron 35.0%
! TCTCAAAAAAACCGGTTTAG+AGG + chr1_3:24101520-24101539 None:intergenic 35.0%
TCAGGTTCTCTCAAAAAAAC+CGG + chr1_3:24101528-24101547 None:intergenic 35.0%
ACAATCCACTTCAATATGTC+AGG + chr1_3:24101546-24101565 None:intergenic 35.0%
GAGAGATGTATTGGGAATAT+CGG + chr1_3:24101639-24101658 None:intergenic 35.0%
ATATTCCCAATACATCTCTC+AGG - chr1_3:24101639-24101658 Msa0110950:intron 35.0%
TATTCCCAATACATCTCTCA+GGG - chr1_3:24101640-24101659 Msa0110950:intron 35.0%
TACAAATGAACTCAGTCTGA+GGG + chr1_3:24101666-24101685 None:intergenic 35.0%
TTACAAATGAACTCAGTCTG+AGG + chr1_3:24101667-24101686 None:intergenic 35.0%
GAGTTCATTTGTAACAAGCT+TGG - chr1_3:24101673-24101692 Msa0110950:intron 35.0%
TGAATCCAGATGATATACCT+CGG + chr1_3:24101882-24101901 None:intergenic 35.0%
! GTATATATTAGGTTGCAGCT+TGG - chr1_3:24101987-24102006 Msa0110950:intron 35.0%
! TGGAGGTATGTTTCTTTCAA+TGG - chr1_3:24102351-24102370 Msa0110950:intron 35.0%
AACAGTGCAAGCTCTTAATA+TGG - chr1_3:24102393-24102412 Msa0110950:CDS 35.0%
ACAGTGCAAGCTCTTAATAT+GGG - chr1_3:24102394-24102413 Msa0110950:CDS 35.0%
! AATCATTTTACAGTAGCCCT+TGG + chr1_3:24102598-24102617 None:intergenic 35.0%
TTGCTTATGTGAGTAATACG+AGG - chr1_3:24102705-24102724 Msa0110950:intron 35.0%
ATGATGAAAAAAAGTGGTGG+AGG - chr1_3:24102812-24102831 Msa0110950:intron 35.0%
!! TTTTGATTCTGCACTCAGAA+AGG - chr1_3:24102870-24102889 Msa0110950:intron 35.0%
ATTCTACAAATTGGCTGACT+TGG + chr1_3:24102915-24102934 None:intergenic 35.0%
! CTTTTAACAATGAGAAGGTC+CGG - chr1_3:24102956-24102975 Msa0110950:intron 35.0%
CATTATCAGTATCAGACATC+CGG + chr1_3:24102978-24102997 None:intergenic 35.0%
TTCACTAGAAGCTTCATTAG+AGG + chr1_3:24103058-24103077 None:intergenic 35.0%
TGTGACAGTGAAACTGAAAA+TGG - chr1_3:24103105-24103124 Msa0110950:intron 35.0%
TGCTAACGTTGTTCAAAAGT+TGG - chr1_3:24103212-24103231 Msa0110950:intron 35.0%
GCTAACGTTGTTCAAAAGTT+GGG - chr1_3:24103213-24103232 Msa0110950:intron 35.0%
CTGTTCCTGAGAAATTAAAG+TGG - chr1_3:24103241-24103260 Msa0110950:intron 35.0%
CTGGAGTTCCTAAACAAAAT+TGG - chr1_3:24103270-24103289 Msa0110950:intron 35.0%
TTCACTTCCAGAGGTAAAAA+AGG - chr1_3:24103413-24103432 Msa0110950:intron 35.0%
! ACGCCTTTCATCTTTCATTT+TGG + chr1_3:24103508-24103527 None:intergenic 35.0%
! CAACAATGATCCATTTTCTG+GGG + chr1_3:24103616-24103635 None:intergenic 35.0%
! CCAACAATGATCCATTTTCT+GGG + chr1_3:24103617-24103636 None:intergenic 35.0%
! TCCAACAATGATCCATTTTC+TGG + chr1_3:24103618-24103637 None:intergenic 35.0%
AACTCAGACTTGATGAAACT+TGG + chr1_3:24103732-24103751 None:intergenic 35.0%
GGTAAGTGAACTCATTGATA+GGG + chr1_3:24103812-24103831 None:intergenic 35.0%
AGGTAAGTGAACTCATTGAT+AGG + chr1_3:24103813-24103832 None:intergenic 35.0%
TGGCAGTAAAACACAGAATT+TGG + chr1_3:24103868-24103887 None:intergenic 35.0%
CAGTGCATGGAAAAATATGT+TGG + chr1_3:24103888-24103907 None:intergenic 35.0%
AGAAAATAGAAAGCAGTGCA+TGG + chr1_3:24103901-24103920 None:intergenic 35.0%
! TTGCAACCTGAAAGTTCTAA+TGG + chr1_3:24103927-24103946 None:intergenic 35.0%
!! AGAACTTTCAGGTTGCAATT+TGG - chr1_3:24103929-24103948 Msa0110950:intron 35.0%
AGATTAGTGATTGCATTTCG+GGG - chr1_3:24103970-24103989 Msa0110950:intron 35.0%
!! TATTTTTCAGACGCAATGGA+AGG - chr1_3:24104077-24104096 Msa0110950:intron 35.0%
GGTTAGAAATGAATGTTACC+CGG + chr1_3:24104133-24104152 None:intergenic 35.0%
GGACTTGTATGATATTTGAC+TGG - chr1_3:24104242-24104261 Msa0110950:CDS 35.0%
TGTCATGCTACTCAACAAAA+TGG - chr1_3:24104299-24104318 Msa0110950:CDS 35.0%
CATTAGCAACTACTTACACA+AGG + chr1_3:24104409-24104428 None:intergenic 35.0%
GAATAGCAACTACTTACACA+AGG - chr1_3:24104435-24104454 Msa0110950:CDS 35.0%
TAACCGGTAAAAAAGTCAGA+AGG - chr1_3:24104508-24104527 Msa0110950:CDS 35.0%
AACCGGTAAAAAAGTCAGAA+GGG - chr1_3:24104509-24104528 Msa0110950:CDS 35.0%
!!! TTCCCTTCTGACTTTTTTAC+CGG + chr1_3:24104514-24104533 None:intergenic 35.0%
TTGCTTATAATAGTGACTGG+AGG - chr1_3:24104971-24104990 Msa0110950:CDS 35.0%
TGCTTATAATAGTGACTGGA+GGG - chr1_3:24104972-24104991 Msa0110950:CDS 35.0%
AATGCATGTGGAAGTTTGTA+AGG - chr1_3:24105156-24105175 Msa0110950:CDS 35.0%
ATGCATGTGGAAGTTTGTAA+GGG - chr1_3:24105157-24105176 Msa0110950:CDS 35.0%
TGTAAGGGGTCTTAGATTAA+AGG - chr1_3:24105172-24105191 Msa0110950:CDS 35.0%
GTAAGGGGTCTTAGATTAAA+GGG - chr1_3:24105173-24105192 Msa0110950:CDS 35.0%
! GAGTCTTTTCCTTTCTTATG+TGG + chr1_3:24105327-24105346 None:intergenic 35.0%
CCTATAGCTAGAATTCTCTA+TGG + chr1_3:24105351-24105370 None:intergenic 35.0%
! CCATAGAGAATTCTAGCTAT+AGG - chr1_3:24105348-24105367 Msa0110950:CDS 35.0%
CTTCCAACTTAGTATATGGT+TGG - chr1_3:24105417-24105436 Msa0110950:CDS 35.0%
CTACCAACCATATACTAAGT+TGG + chr1_3:24105423-24105442 None:intergenic 35.0%
CAACTTAGTATATGGTTGGT+AGG - chr1_3:24105421-24105440 Msa0110950:CDS 35.0%
!! GCACAAGAGGATCATTTTTA+AGG + chr1_3:24105465-24105484 None:intergenic 35.0%
GAACACTTTAGGCATCAATC+TGG + chr1_3:24097463-24097482 None:intergenic 40.0%
GAGAATGGTTGGAACACTTT+AGG + chr1_3:24097474-24097493 None:intergenic 40.0%
GTTTGTATTTCCGTCGAGAA+TGG + chr1_3:24097489-24097508 None:intergenic 40.0%
AAGTTGAGACGTGACTATGT+GGG + chr1_3:24097572-24097591 None:intergenic 40.0%
AAAGTTGAGACGTGACTATG+TGG + chr1_3:24097573-24097592 None:intergenic 40.0%
CAAACGCAGATGTTCATAAG+CGG - chr1_3:24097594-24097613 Msa0110950:intron 40.0%
! AATTTTTGCTGGGACCTTGA+AGG - chr1_3:24097641-24097660 Msa0110950:intron 40.0%
! ATTTTTGCTGGGACCTTGAA+GGG - chr1_3:24097642-24097661 Msa0110950:intron 40.0%
TAGCACATAAGTGGATAGCA+GGG - chr1_3:24097667-24097686 Msa0110950:intron 40.0%
AAGTTTGTGATTGATCTGGC+AGG + chr1_3:24097696-24097715 None:intergenic 40.0%
AACAAATCTGCCAGTAGGAA+AGG + chr1_3:24097771-24097790 None:intergenic 40.0%
TGTCAAACAAATCTGCCAGT+AGG + chr1_3:24097776-24097795 None:intergenic 40.0%
TAGCTCTTCAAGGATTCAGT+GGG + chr1_3:24097810-24097829 None:intergenic 40.0%
ATAGCTCTTCAAGGATTCAG+TGG + chr1_3:24097811-24097830 None:intergenic 40.0%
TGAATCCTTGAAGAGCTATC+TGG - chr1_3:24097812-24097831 Msa0110950:intron 40.0%
CATGAATGAGATTCGGATGA+GGG - chr1_3:24097959-24097978 Msa0110950:intron 40.0%
! TTTCTCCCTTGTTATCTCCT+CGG + chr1_3:24098003-24098022 None:intergenic 40.0%
AAGGAGTGATGAAAAGGCTA+GGG - chr1_3:24098072-24098091 Msa0110950:intron 40.0%
! GAGTGAAATTTTCCTCCCAT+GGG + chr1_3:24098172-24098191 None:intergenic 40.0%
!! GATCGACTTGAATCTCTACT+AGG + chr1_3:24098443-24098462 None:intergenic 40.0%
CTTCATGACAAAGAAGCTGA+AGG - chr1_3:24098491-24098510 Msa0110950:intron 40.0%
ATGACAAAGAAGCTGAAGGA+GGG - chr1_3:24098495-24098514 Msa0110950:intron 40.0%
GTCCAACCAATCTTGCAATA+TGG - chr1_3:24098610-24098629 Msa0110950:intron 40.0%
CACCATATTGCAAGATTGGT+TGG + chr1_3:24098615-24098634 None:intergenic 40.0%
CAACCAATCTTGCAATATGG+TGG - chr1_3:24098613-24098632 Msa0110950:intron 40.0%
TTACCAATGGAGTTCGTAAG+AGG - chr1_3:24099099-24099118 Msa0110950:CDS 40.0%
TACCAATGGAGTTCGTAAGA+GGG - chr1_3:24099100-24099119 Msa0110950:CDS 40.0%
TGTTTGCAGTTCAAGTGCTT+AGG - chr1_3:24099152-24099171 Msa0110950:CDS 40.0%
AATACAAAACCCACTTGGGT+TGG + chr1_3:24099360-24099379 None:intergenic 40.0%
TGTTTCAGGAAAACTTGGGT+AGG - chr1_3:24099769-24099788 Msa0110950:CDS 40.0%
!! AGCTCTAAGGCAACAATGAA+GGG + chr1_3:24099853-24099872 None:intergenic 40.0%
CATAGATCAATTGCCGTCAT+TGG + chr1_3:24099932-24099951 None:intergenic 40.0%
GTGTAGCTTCTTCCAAATCA+CGG - chr1_3:24100065-24100084 Msa0110950:CDS 40.0%
TGTGTGTGTGGTTAGATTTG+CGG + chr1_3:24100118-24100137 None:intergenic 40.0%
ATGCAAAGACAATCAACCCA+TGG + chr1_3:24100257-24100276 None:intergenic 40.0%
TTACTTATTCCAAGCCTACC+AGG - chr1_3:24100543-24100562 Msa0110950:CDS 40.0%
GCAAATGCAAGGATAGTTTG+AGG + chr1_3:24100665-24100684 None:intergenic 40.0%
!! AGAAAGTGCTTGCAAATGCA+AGG + chr1_3:24100676-24100695 None:intergenic 40.0%
AAAAGAGCCAACATGGAATG+AGG - chr1_3:24100930-24100949 Msa0110950:intron 40.0%
TCATGCTTCTTAACCTGTAG+AGG + chr1_3:24100991-24101010 None:intergenic 40.0%
ATGTGCACCCATACAAACAT+TGG - chr1_3:24101071-24101090 Msa0110950:intron 40.0%
GGACATGCCAATGTTTGTAT+GGG + chr1_3:24101081-24101100 None:intergenic 40.0%
TGGACATGCCAATGTTTGTA+TGG + chr1_3:24101082-24101101 None:intergenic 40.0%
! GGGAACCTTTTAAATACGCA+TGG - chr1_3:24101153-24101172 Msa0110950:intron 40.0%
! TATTAAGACGCTGATTGGAC+TGG - chr1_3:24101274-24101293 Msa0110950:intron 40.0%
! TCTGGATGAGTATTGTGCTA+CGG - chr1_3:24101376-24101395 Msa0110950:intron 40.0%
GAGAACCTGACATATTGAAG+TGG - chr1_3:24101538-24101557 Msa0110950:intron 40.0%
! TATTGGGAATATCGGCTAGA+TGG + chr1_3:24101631-24101650 None:intergenic 40.0%
! GAAGTGAGCGTTTTTCCTTA+TGG - chr1_3:24101846-24101865 Msa0110950:intron 40.0%
!! GATTTGGAATGGCTTTGTGA+TGG - chr1_3:24102058-24102077 Msa0110950:intron 40.0%
AGGAGATACGCATGAAATAC+TGG - chr1_3:24102289-24102308 Msa0110950:intron 40.0%
AGATACGCATGAAATACTGG+TGG - chr1_3:24102292-24102311 Msa0110950:intron 40.0%
CAGTGCAAGCTCTTAATATG+GGG - chr1_3:24102395-24102414 Msa0110950:CDS 40.0%
AACTGAAAATGGACACGCTT+TGG - chr1_3:24103116-24103135 Msa0110950:intron 40.0%
! CCATCCCACTTTAATTTCTC+AGG + chr1_3:24103249-24103268 None:intergenic 40.0%
CCTGAGAAATTAAAGTGGGA+TGG - chr1_3:24103246-24103265 Msa0110950:intron 40.0%
GAAATTAAAGTGGGATGGAC+TGG - chr1_3:24103251-24103270 Msa0110950:intron 40.0%
! GCCTGAAAGCACAGAAATAT+CGG - chr1_3:24103347-24103366 Msa0110950:intron 40.0%
! TCCGATATTTCTGTGCTTTC+AGG + chr1_3:24103351-24103370 None:intergenic 40.0%
TGAAGACTGAATTGCAGCAA+TGG + chr1_3:24103397-24103416 None:intergenic 40.0%
AATTCAGTCTTCACTTCCAG+AGG - chr1_3:24103404-24103423 Msa0110950:intron 40.0%
!!! TCTGTTGCCTTTTTTACCTC+TGG + chr1_3:24103423-24103442 None:intergenic 40.0%
ACCAAAGAAGATTCTACCGA+AGG - chr1_3:24103546-24103565 Msa0110950:intron 40.0%
TCCTTCGGTAGAATCTTCTT+TGG + chr1_3:24103550-24103569 None:intergenic 40.0%
!!! AATGATCCATTTTCTGGGGT+AGG + chr1_3:24103612-24103631 None:intergenic 40.0%
CCCAGAAAATGGATCATTGT+TGG - chr1_3:24103614-24103633 Msa0110950:intron 40.0%
AAGTGAACTCATTGATAGGG+AGG + chr1_3:24103809-24103828 None:intergenic 40.0%
GCAATGGAAGGACTTAGTAA+CGG - chr1_3:24104089-24104108 Msa0110950:intron 40.0%
GTAAAATGCGGACAACAACA+AGG - chr1_3:24104562-24104581 Msa0110950:CDS 40.0%
GAGATTCTTGTAACAAGGGA+CGG + chr1_3:24104665-24104684 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_3:24104856-24104875 None:intergenic 40.0%
ATGCTTATAATAGTGACCGG+AGG + chr1_3:24104857-24104876 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG - chr1_3:24105013-24105032 Msa0110950:CDS 40.0%
TGCATGTGGAAGTTTGTAAG+GGG - chr1_3:24105158-24105177 Msa0110950:CDS 40.0%
! ATGATTTTGAGCAGCACAAG+AGG + chr1_3:24105478-24105497 None:intergenic 40.0%
AAATCTCCACCTATCCTTTC+AGG + chr1_3:24105592-24105611 None:intergenic 40.0%
! TTCCAGTTGTTGCTTCAGCT+CGG + chr1_3:24097340-24097359 None:intergenic 45.0%
CTCTTGAGAAACAACGTGAC+TGG - chr1_3:24097426-24097445 Msa0110950:intron 45.0%
CACTTTAGGCATCAATCTGG+TGG + chr1_3:24097460-24097479 None:intergenic 45.0%
AGTGTTCCAACCATTCTCGA+CGG - chr1_3:24097476-24097495 Msa0110950:intron 45.0%
GTATTTCCGTCGAGAATGGT+TGG + chr1_3:24097485-24097504 None:intergenic 45.0%
! TGGAAATCCCTCGTCACTTT+CGG - chr1_3:24097511-24097530 Msa0110950:intron 45.0%
CGCTTATGAACATCTGCGTT+TGG + chr1_3:24097596-24097615 None:intergenic 45.0%
CTTATGTGCTACACCCTTCA+AGG + chr1_3:24097658-24097677 None:intergenic 45.0%
! TGAAGGGTGTAGCACATAAG+TGG - chr1_3:24097658-24097677 Msa0110950:intron 45.0%
GTAGCACATAAGTGGATAGC+AGG - chr1_3:24097666-24097685 Msa0110950:intron 45.0%
! CACGGTATTTGCTGCGAATT+GGG + chr1_3:24097745-24097764 None:intergenic 45.0%
! TCACGGTATTTGCTGCGAAT+TGG + chr1_3:24097746-24097765 None:intergenic 45.0%
AGCTCTTCAAGGATTCAGTG+GGG + chr1_3:24097809-24097828 None:intergenic 45.0%
TTTGAGAAGGGTCTGAACTC+TGG - chr1_3:24097897-24097916 Msa0110950:intron 45.0%
CCTCATCCGAATCTCATTCA+TGG + chr1_3:24097961-24097980 None:intergenic 45.0%
CCATGAATGAGATTCGGATG+AGG - chr1_3:24097958-24097977 Msa0110950:intron 45.0%
TTGAAGCCGAGGAGATAACA+AGG - chr1_3:24097994-24098013 Msa0110950:intron 45.0%
TGAAGCCGAGGAGATAACAA+GGG - chr1_3:24097995-24098014 Msa0110950:intron 45.0%
GAGGAGATAACAAGGGAGAA+AGG - chr1_3:24098002-24098021 Msa0110950:intron 45.0%
AAAGGATCTAGAGAGACACG+AGG - chr1_3:24098020-24098039 Msa0110950:intron 45.0%
GAAGGAGTGATGAAAAGGCT+AGG - chr1_3:24098071-24098090 Msa0110950:intron 45.0%
AGGAGTGATGAAAAGGCTAG+GGG - chr1_3:24098073-24098092 Msa0110950:intron 45.0%
! GGAGTGAAATTTTCCTCCCA+TGG + chr1_3:24098173-24098192 None:intergenic 45.0%
TTGATACAAGAGGGTCACCT+TGG - chr1_3:24098368-24098387 Msa0110950:intron 45.0%
TGATACAAGAGGGTCACCTT+GGG - chr1_3:24098369-24098388 Msa0110950:intron 45.0%
CATGACAAAGAAGCTGAAGG+AGG - chr1_3:24098494-24098513 Msa0110950:intron 45.0%
CGGCCAGAAGAAGATATTCA+CGG - chr1_3:24098588-24098607 Msa0110950:intron 45.0%
GGACCGTGAATATCTTCTTC+TGG + chr1_3:24098594-24098613 None:intergenic 45.0%
CTCCCACCATATTGCAAGAT+TGG + chr1_3:24098619-24098638 None:intergenic 45.0%
TACCCTCTTACGAACTCCAT+TGG + chr1_3:24099105-24099124 None:intergenic 45.0%
CTAAACTAGCCCACCCAAAT+CGG - chr1_3:24099265-24099284 Msa0110950:CDS 45.0%
!! ATTCTTCCCGATGCCGATTT+GGG + chr1_3:24099281-24099300 None:intergenic 45.0%
!! CAGCTCTAAGGCAACAATGA+AGG + chr1_3:24099854-24099873 None:intergenic 45.0%
TAGCTTCTTCCAAATCACGG+TGG - chr1_3:24100068-24100087 Msa0110950:CDS 45.0%
CGGTGAGAATGGCAAAATCA+CGG + chr1_3:24100098-24100117 None:intergenic 45.0%
GGTTAGATTTGCGGTGAGAA+TGG + chr1_3:24100109-24100128 None:intergenic 45.0%
GCATGCACATTATGTGTGTG+TGG + chr1_3:24100130-24100149 None:intergenic 45.0%
ACAATCAACCCATGGATCCA+TGG + chr1_3:24100249-24100268 None:intergenic 45.0%
ATTCCAAGCCTACCAGGTAA+TGG - chr1_3:24100549-24100568 Msa0110950:CDS 45.0%
TAACCATTACCTGGTAGGCT+TGG + chr1_3:24100555-24100574 None:intergenic 45.0%
GTGAACTCCTCATTCCATGT+TGG + chr1_3:24100940-24100959 None:intergenic 45.0%
TGTCGCTAGATTTAGTGCTC+TGG - chr1_3:24101358-24101377 Msa0110950:intron 45.0%
AATCTATGTTCTCCACCCTG+AGG - chr1_3:24101699-24101718 Msa0110950:intron 45.0%
ATCTATGTTCTCCACCCTGA+GGG - chr1_3:24101700-24101719 Msa0110950:intron 45.0%
CAGATGATATACCTCGGTAC+AGG + chr1_3:24101876-24101895 None:intergenic 45.0%
CTGTACCGAGGTATATCATC+TGG - chr1_3:24101874-24101893 Msa0110950:intron 45.0%
ATGCAGTCGTGGATTTGGAA+TGG - chr1_3:24102047-24102066 Msa0110950:intron 45.0%
GCATGAAATACTGGTGGAGT+TGG - chr1_3:24102298-24102317 Msa0110950:intron 45.0%
GAAATACTGGTGGAGTTGGA+AGG - chr1_3:24102302-24102321 Msa0110950:intron 45.0%
TCTGCACTCAGAAAGGTTAC+TGG - chr1_3:24102877-24102896 Msa0110950:intron 45.0%
! AACTCTTCCTCACTAGCTTG+TGG + chr1_3:24103150-24103169 None:intergenic 45.0%
GACTGAATTGCAGCAATGGA+AGG + chr1_3:24103393-24103412 None:intergenic 45.0%
!! AAAGGCGTTCTTCTGAAGAG+AGG - chr1_3:24103520-24103539 Msa0110950:intron 45.0%
GAAGATTCTACCGAAGGAGT+AGG - chr1_3:24103552-24103571 Msa0110950:intron 45.0%
AATGTCACTGCCTACTCCTT+CGG + chr1_3:24103565-24103584 None:intergenic 45.0%
AAGTCTCCTACCCCAGAAAA+TGG - chr1_3:24103603-24103622 Msa0110950:intron 45.0%
!! TTCAACTGCTGAAAGTGCCA+TGG - chr1_3:24103671-24103690 Msa0110950:intron 45.0%
ACTTGGATGACCTAGTGAAG+TGG + chr1_3:24103715-24103734 None:intergenic 45.0%
TAATGCATCCACTGACACAC+AGG - chr1_3:24103773-24103792 Msa0110950:intron 45.0%
ACAAAACACCTGTGTGTCAG+TGG + chr1_3:24103784-24103803 None:intergenic 45.0%
CATAGTACTGTTCTGCCATC+TGG - chr1_3:24104029-24104048 Msa0110950:intron 45.0%
GATCTAATGCTTGTTCCAGC+CGG - chr1_3:24104111-24104130 Msa0110950:intron 45.0%
ATCTAATGCTTGTTCCAGCC+GGG - chr1_3:24104112-24104131 Msa0110950:intron 45.0%
AGAAATGAATGTTACCCGGC+TGG + chr1_3:24104129-24104148 None:intergenic 45.0%
TTCTTGTAACAAGGGACGGA+TGG + chr1_3:24104661-24104680 None:intergenic 45.0%
!! TTCTCCCTTGGTGCCAATTT+GGG + chr1_3:24105029-24105048 None:intergenic 45.0%
!! ATTCTCCCTTGGTGCCAATT+TGG + chr1_3:24105030-24105049 None:intergenic 45.0%
TCTCATGTTCGATTCTCCCT+TGG + chr1_3:24105041-24105060 None:intergenic 45.0%
GAATCGAACATGAGACCTTG+AGG - chr1_3:24105046-24105065 Msa0110950:CDS 45.0%
!! ATTTTTAAGGGCCCCTTAGC+TGG + chr1_3:24105452-24105471 None:intergenic 45.0%
TCCATAGGCTGAATCCTGAA+AGG - chr1_3:24105575-24105594 Msa0110950:CDS 45.0%
TCCTTTCAGGATTCAGCCTA+TGG + chr1_3:24105579-24105598 None:intergenic 45.0%
AGGCTGAATCCTGAAAGGAT+AGG - chr1_3:24105580-24105599 Msa0110950:CDS 45.0%
CTGAATCCTGAAAGGATAGG+TGG - chr1_3:24105583-24105602 Msa0110950:CDS 45.0%
AGGTGGAGATTTCAAGCAAG+AGG - chr1_3:24105600-24105619 Msa0110950:CDS 45.0%
!!! ATTAAAATAATTTCATTTTT+TGG + chr1_3:24099667-24099686 None:intergenic 5.0%
GTTGCTCGACATTTCGCTCT+TGG + chr1_3:24097263-24097282 None:intergenic 50.0%
TGACGAACATCAACGTCTGC+AGG - chr1_3:24097293-24097312 Msa0110950:intron 50.0%
CTCGACGGAAATACAAACGG+TGG - chr1_3:24097491-24097510 Msa0110950:intron 50.0%
! GGAAATCCCTCGTCACTTTC+GGG - chr1_3:24097512-24097531 Msa0110950:intron 50.0%
CCATCGTACGAGTCAATGGT+GGG + chr1_3:24097540-24097559 None:intergenic 50.0%
!! CCACCATTGACTCGTACGAT+GGG - chr1_3:24097538-24097557 Msa0110950:intron 50.0%
GAATTGGGCAACGAAACGAG+TGG + chr1_3:24097730-24097749 None:intergenic 50.0%
TACCGTGAAGCCTTTCCTAC+TGG - chr1_3:24097758-24097777 Msa0110950:intron 50.0%
TGCCAGTAGGAAAGGCTTCA+CGG + chr1_3:24097763-24097782 None:intergenic 50.0%
CCTTGAAGAGCTATCTGGCT+CGG - chr1_3:24097817-24097836 Msa0110950:intron 50.0%
GTTCAACAACGCCACTCTCA+TGG - chr1_3:24097839-24097858 Msa0110950:intron 50.0%
CATGGTGACAGAGCCAAATG+AGG - chr1_3:24097857-24097876 Msa0110950:intron 50.0%
! TGAAGCTTTGACGTTGCGCA+AGG - chr1_3:24097929-24097948 Msa0110950:intron 50.0%
GAATGAGATTCGGATGAGGG+CGG - chr1_3:24097962-24097981 Msa0110950:intron 50.0%
GTCGGGAAGGAGTGATGAAA+AGG - chr1_3:24098066-24098085 Msa0110950:intron 50.0%
GGAGTGATGAAAAGGCTAGG+GGG - chr1_3:24098074-24098093 Msa0110950:intron 50.0%
TGAAAAGGCTAGGGGGAGAA+AGG - chr1_3:24098081-24098100 Msa0110950:intron 50.0%
TGATAGGGACTTCACGCTCT+GGG + chr1_3:24098142-24098161 None:intergenic 50.0%
AGCGTGAAGTCCCTATCAGA+AGG - chr1_3:24098144-24098163 Msa0110950:intron 50.0%
TCCCTATCAGAAGGAACCCA+TGG - chr1_3:24098153-24098172 Msa0110950:intron 50.0%
CCCATGGGTTCCTTCTGATA+GGG + chr1_3:24098157-24098176 None:intergenic 50.0%
CCCTATCAGAAGGAACCCAT+GGG - chr1_3:24098154-24098173 Msa0110950:intron 50.0%
TCCCATGGGTTCCTTCTGAT+AGG + chr1_3:24098158-24098177 None:intergenic 50.0%
TATCAGAAGGAACCCATGGG+AGG - chr1_3:24098157-24098176 Msa0110950:intron 50.0%
TGAGCTCTTCCCTTGTTGAG+AGG + chr1_3:24098194-24098213 None:intergenic 50.0%
TGTGAATACCATCGCACCCA+AGG - chr1_3:24098299-24098318 Msa0110950:intron 50.0%
GTTGTCGGTATCGTGTCCTT+GGG + chr1_3:24098318-24098337 None:intergenic 50.0%
AGTTGTCGGTATCGTGTCCT+TGG + chr1_3:24098319-24098338 None:intergenic 50.0%
! TCGAAGGGTACGACAGTTGT+CGG + chr1_3:24098333-24098352 None:intergenic 50.0%
AGGAGGCTACCAGGACAAAA+GGG - chr1_3:24098412-24098431 Msa0110950:intron 50.0%
CGAAAGGAACAACAGAGGCA+CGG - chr1_3:24098520-24098539 Msa0110950:intron 50.0%
!! ACCATAGCGGGAGGATTTTC+TGG - chr1_3:24098548-24098567 Msa0110950:intron 50.0%
TCCAGAAAATCCTCCCGCTA+TGG + chr1_3:24098552-24098571 None:intergenic 50.0%
!! ATAGCGGGAGGATTTTCTGG+AGG - chr1_3:24098551-24098570 Msa0110950:intron 50.0%
! TAGCGGGAGGATTTTCTGGA+GGG - chr1_3:24098552-24098571 Msa0110950:intron 50.0%
! GATTCTTCCCGATGCCGATT+TGG + chr1_3:24099282-24099301 None:intergenic 50.0%
CTTGGAGTGTGCTTCTCTCA+AGG + chr1_3:24099315-24099334 None:intergenic 50.0%
! CTTGAGAGAAGCACACTCCA+AGG - chr1_3:24099313-24099332 Msa0110950:CDS 50.0%
ATCAACCCATGGATCCATGG+CGG + chr1_3:24100246-24100265 None:intergenic 50.0%
GGGAACAAGTGATCCGTATG+TGG - chr1_3:24100439-24100458 Msa0110950:intron 50.0%
TCCGTATGTGGTCCTACAGA+TGG - chr1_3:24100451-24100470 Msa0110950:intron 50.0%
CCCATCTGTAGGACCACATA+CGG + chr1_3:24100455-24100474 None:intergenic 50.0%
CCGTATGTGGTCCTACAGAT+GGG - chr1_3:24100452-24100471 Msa0110950:intron 50.0%
CAGTCTGAGAACCCATCTGT+AGG + chr1_3:24100466-24100485 None:intergenic 50.0%
GCAGGACAAAAGAGCCAACA+TGG - chr1_3:24100923-24100942 Msa0110950:intron 50.0%
AGGGCCCTGAGAGATGTATT+GGG + chr1_3:24101647-24101666 None:intergenic 50.0%
TCTATGTTCTCCACCCTGAG+GGG - chr1_3:24101701-24101720 Msa0110950:intron 50.0%
GAACTCTAACACTCCCCTCA+GGG + chr1_3:24101717-24101736 None:intergenic 50.0%
AGAACTCTAACACTCCCCTC+AGG + chr1_3:24101718-24101737 None:intergenic 50.0%
CTCGGTACAGGTGTTCCATA+AGG + chr1_3:24101864-24101883 None:intergenic 50.0%
CTTATGGAACACCTGTACCG+AGG - chr1_3:24101862-24101881 Msa0110950:intron 50.0%
TGCGTTTGTGTGGGGTTACA+AGG + chr1_3:24102021-24102040 None:intergenic 50.0%
TGTAACCCCACACAAACGCA+TGG - chr1_3:24102021-24102040 Msa0110950:intron 50.0%
GTAACCCCACACAAACGCAT+GGG - chr1_3:24102022-24102041 Msa0110950:intron 50.0%
TAACCCCACACAAACGCATG+GGG - chr1_3:24102023-24102042 Msa0110950:intron 50.0%
ATTCCCCATGCGTTTGTGTG+GGG + chr1_3:24102029-24102048 None:intergenic 50.0%
CATTCCCCATGCGTTTGTGT+GGG + chr1_3:24102030-24102049 None:intergenic 50.0%
!! GGAATGGCTTTGTGATGGTG+AGG - chr1_3:24102063-24102082 Msa0110950:intron 50.0%
ACTGGTGGAGTTGGAAGGAA+TGG - chr1_3:24102307-24102326 Msa0110950:intron 50.0%
CTGGTGGAGTTGGAAGGAAT+GGG - chr1_3:24102308-24102327 Msa0110950:intron 50.0%
GAGTTGGAAGGAATGGGTAG+TGG - chr1_3:24102314-24102333 Msa0110950:intron 50.0%
! TTGGAAGGAATGGGTAGTGG+TGG - chr1_3:24102317-24102336 Msa0110950:intron 50.0%
AGCATCACCACAAGCTAGTG+AGG - chr1_3:24103140-24103159 Msa0110950:intron 50.0%
!! AACTGCTGAAAGTGCCATGG+AGG - chr1_3:24103674-24103693 Msa0110950:intron 50.0%
ACAATGCTGGCCACTTCACT+AGG - chr1_3:24103702-24103721 Msa0110950:intron 50.0%
TGCATTTCGGGGAACAGAAC+AGG - chr1_3:24103981-24104000 Msa0110950:intron 50.0%
TCGAACATGAGACCTTGAGG+AGG - chr1_3:24105049-24105068 Msa0110950:CDS 50.0%
!! TGGCCTTGTGGTGTTTGCTT+GGG + chr1_3:24105090-24105109 None:intergenic 50.0%
!! TTGGCCTTGTGGTGTTTGCT+TGG + chr1_3:24105091-24105110 None:intergenic 50.0%
ACCACAAGGCCAAACCAAGT+GGG - chr1_3:24105098-24105117 Msa0110950:CDS 50.0%
GTTCCTACTCCCACTTGGTT+TGG + chr1_3:24105110-24105129 None:intergenic 50.0%
ACCAAGTGGGAGTAGGAACA+CGG - chr1_3:24105111-24105130 Msa0110950:CDS 50.0%
TTGGTAGGCTATGCCAGCTA+AGG - chr1_3:24105436-24105455 Msa0110950:CDS 50.0%
TGGTAGGCTATGCCAGCTAA+GGG - chr1_3:24105437-24105456 Msa0110950:CDS 50.0%
CGAGCTCAGACATCAGATGG+AGG - chr1_3:24097371-24097390 Msa0110950:intron 55.0%
ATCAGATGGAGGCCAGAGAG+AGG - chr1_3:24097382-24097401 Msa0110950:intron 55.0%
TCAGATGGAGGCCAGAGAGA+GGG - chr1_3:24097383-24097402 Msa0110950:intron 55.0%
TGGGTTCCCGAAAGTGACGA+GGG + chr1_3:24097521-24097540 None:intergenic 55.0%
!! CCCACCATTGACTCGTACGA+TGG - chr1_3:24097537-24097556 Msa0110950:intron 55.0%
CCCATCGTACGAGTCAATGG+TGG + chr1_3:24097541-24097560 None:intergenic 55.0%
CGTCCCATCGTACGAGTCAA+TGG + chr1_3:24097544-24097563 None:intergenic 55.0%
CCGAGCCAGATAGCTCTTCA+AGG + chr1_3:24097820-24097839 None:intergenic 55.0%
! TGGCTCTGTCACCATGAGAG+TGG + chr1_3:24097853-24097872 None:intergenic 55.0%
! GGAGAAGCACATTGAAGCCG+AGG - chr1_3:24097983-24098002 Msa0110950:intron 55.0%
GATCCAGTGGGACACCTCTT+GGG + chr1_3:24098109-24098128 None:intergenic 55.0%
CTGATAGGGACTTCACGCTC+TGG + chr1_3:24098143-24098162 None:intergenic 55.0%
ATAGGACGAGGGTTTGGAGG+CGG + chr1_3:24098257-24098276 None:intergenic 55.0%
CCTCCAAACCCTCGTCCTAT+GGG - chr1_3:24098257-24098276 Msa0110950:intron 55.0%
CTCCAAACCCTCGTCCTATG+GGG - chr1_3:24098258-24098277 Msa0110950:intron 55.0%
CTTCACTCCCCATAGGACGA+GGG + chr1_3:24098268-24098287 None:intergenic 55.0%
GTCCTATGGGGAGTGAAGCA+GGG - chr1_3:24098270-24098289 Msa0110950:intron 55.0%
AACCCTGCTTCACTCCCCAT+AGG + chr1_3:24098275-24098294 None:intergenic 55.0%
TATCGTGTCCTTGGGTGCGA+TGG + chr1_3:24098310-24098329 None:intergenic 55.0%
TTCCTTGAACGTAGCGCCCA+AGG + chr1_3:24098388-24098407 None:intergenic 55.0%
TTGGGCGCTACGTTCAAGGA+AGG - chr1_3:24098387-24098406 Msa0110950:intron 55.0%
TGGGCGCTACGTTCAAGGAA+GGG - chr1_3:24098388-24098407 Msa0110950:intron 55.0%
TACGTTCAAGGAAGGGGAGG+AGG - chr1_3:24098395-24098414 Msa0110950:intron 55.0%
GAGGAGGCTACCAGGACAAA+AGG - chr1_3:24098411-24098430 Msa0110950:intron 55.0%
! TAGGAGCAGCCCTTTTGTCC+TGG + chr1_3:24098424-24098443 None:intergenic 55.0%
TCCTTTCCACGACCTCGCTT+CGG + chr1_3:24098467-24098486 None:intergenic 55.0%
! AAGCTGAAGGAGGGCACGAA+AGG - chr1_3:24098504-24098523 Msa0110950:intron 55.0%
GGGCACGAAAGGAACAACAG+AGG - chr1_3:24098515-24098534 Msa0110950:intron 55.0%
AGGCACGGTCAACACCATAG+CGG - chr1_3:24098535-24098554 Msa0110950:intron 55.0%
!! AGCGGGAGGATTTTCTGGAG+GGG - chr1_3:24098553-24098572 Msa0110950:intron 55.0%
TGGAGGGGGATCAACTAGCT+CGG - chr1_3:24098568-24098587 Msa0110950:intron 55.0%
TAGCCCACCCAAATCGGCAT+CGG - chr1_3:24099271-24099290 Msa0110950:CDS 55.0%
!! TTCCCGATGCCGATTTGGGT+GGG + chr1_3:24099277-24099296 None:intergenic 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG + chr1_3:24099333-24099352 None:intergenic 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + chr1_3:24099340-24099359 None:intergenic 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + chr1_3:24099341-24099360 None:intergenic 55.0%
!! TTGGGTTGGCCTGATGGTGT+TGG + chr1_3:24099346-24099365 None:intergenic 55.0%
ACCATCAGGCCAACCCAAGT+GGG - chr1_3:24099348-24099367 Msa0110950:CDS 55.0%
GGAAAACTTGGGTAGGCGTG+AGG - chr1_3:24099776-24099795 Msa0110950:CDS 55.0%
TCAACCCATGGATCCATGGC+GGG + chr1_3:24100245-24100264 None:intergenic 55.0%
GTCGGGGATGAAACCTCTAC+AGG - chr1_3:24100975-24100994 Msa0110950:intron 55.0%
GAGGGCCCTGAGAGATGTAT+TGG + chr1_3:24101648-24101667 None:intergenic 55.0%
GCATTCCCCATGCGTTTGTG+TGG + chr1_3:24102031-24102050 None:intergenic 55.0%
GGGGAATGCAGTCGTGGATT+TGG - chr1_3:24102042-24102061 Msa0110950:intron 55.0%
! GGCTTTGTGATGGTGAGGAC+TGG - chr1_3:24102068-24102087 Msa0110950:intron 55.0%
! AGGAATGGGTAGTGGTGGAG+AGG - chr1_3:24102322-24102341 Msa0110950:intron 55.0%
! TGGGTAGTGGTGGAGAGGTT+TGG - chr1_3:24102327-24102346 Msa0110950:intron 55.0%
! TAGTGGTGGAGAGGTTTGGC+TGG - chr1_3:24102331-24102350 Msa0110950:intron 55.0%
!! CTGAAAGTGCCATGGAGGCT+TGG - chr1_3:24103679-24103698 Msa0110950:intron 55.0%
CAGCATTGTCCAAGCCTCCA+TGG + chr1_3:24103691-24103710 None:intergenic 55.0%
CATGGAGGCTTGGACAATGC+TGG - chr1_3:24103689-24103708 Msa0110950:intron 55.0%
!! CCCTTGGTGCCAATTTGGGT+GGG + chr1_3:24105025-24105044 None:intergenic 55.0%
CCCACCCAAATTGGCACCAA+GGG - chr1_3:24105022-24105041 Msa0110950:CDS 55.0%
!! TCCCTTGGTGCCAATTTGGG+TGG + chr1_3:24105026-24105045 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr1_3:24105064-24105083 None:intergenic 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr1_3:24105063-24105082 Msa0110950:CDS 55.0%
GTGGTGTTTGCTTGGGACCT+TGG + chr1_3:24105083-24105102 None:intergenic 55.0%
GGTCCCAAGCAAACACCACA+AGG - chr1_3:24105084-24105103 Msa0110950:CDS 55.0%
CACCACAAGGCCAAACCAAG+TGG - chr1_3:24105097-24105116 Msa0110950:CDS 55.0%
!! TCCCACTTGGTTTGGCCTTG+TGG + chr1_3:24105102-24105121 None:intergenic 55.0%
AGGCCAAACCAAGTGGGAGT+AGG - chr1_3:24105104-24105123 Msa0110950:CDS 55.0%
CCAAGTGGGAGTAGGAACAC+GGG - chr1_3:24105112-24105131 Msa0110950:CDS 55.0%
GGTAGGCTATGCCAGCTAAG+GGG - chr1_3:24105438-24105457 Msa0110950:CDS 55.0%
TGCAGGCAGAAGCCCTTGCT+CGG - chr1_3:24097310-24097329 Msa0110950:intron 60.0%
GGCCGAGCTGAAGCAACAAC+TGG - chr1_3:24097335-24097354 Msa0110950:intron 60.0%
GCGCGAGCTCAGACATCAGA+TGG - chr1_3:24097368-24097387 Msa0110950:intron 60.0%
GTGGGTTCCCGAAAGTGACG+AGG + chr1_3:24097522-24097541 None:intergenic 60.0%
TCAAGGATTCAGTGGGGCGC+TGG + chr1_3:24097803-24097822 None:intergenic 60.0%
GAGAGACACGAGGCAGAGAC+CGG - chr1_3:24098030-24098049 Msa0110950:intron 60.0%
AGAGACACGAGGCAGAGACC+GGG - chr1_3:24098031-24098050 Msa0110950:intron 60.0%
ACCGGGCTAACGAGGATCGT+CGG - chr1_3:24098048-24098067 Msa0110950:intron 60.0%
GCTAACGAGGATCGTCGGGA+AGG - chr1_3:24098053-24098072 Msa0110950:intron 60.0%
CGATCCAGTGGGACACCTCT+TGG + chr1_3:24098110-24098129 None:intergenic 60.0%
!! AGAGGTGTCCCACTGGATCG+AGG - chr1_3:24098110-24098129 Msa0110950:intron 60.0%
! TAGGGACTTCACGCTCTGGG+CGG + chr1_3:24098139-24098158 None:intergenic 60.0%
GCCTCCAAACCCTCGTCCTA+TGG - chr1_3:24098256-24098275 Msa0110950:intron 60.0%
CCCATAGGACGAGGGTTTGG+AGG + chr1_3:24098260-24098279 None:intergenic 60.0%
CTCCCCATAGGACGAGGGTT+TGG + chr1_3:24098263-24098282 None:intergenic 60.0%
GCTTCACTCCCCATAGGACG+AGG + chr1_3:24098269-24098288 None:intergenic 60.0%
CGTCCTATGGGGAGTGAAGC+AGG - chr1_3:24098269-24098288 Msa0110950:intron 60.0%
TGGGGAGTGAAGCAGGGTTG+TGG - chr1_3:24098276-24098295 Msa0110950:intron 60.0%
CACCTTGGGCGCTACGTTCA+AGG - chr1_3:24098383-24098402 Msa0110950:intron 60.0%
GGGCGCTACGTTCAAGGAAG+GGG - chr1_3:24098389-24098408 Msa0110950:intron 60.0%
CGCTACGTTCAAGGAAGGGG+AGG - chr1_3:24098392-24098411 Msa0110950:intron 60.0%
TCAAGTCGATCCCCGAAGCG+AGG - chr1_3:24098452-24098471 Msa0110950:intron 60.0%
CTTTCCACGACCTCGCTTCG+GGG + chr1_3:24098465-24098484 None:intergenic 60.0%
CCTTTCCACGACCTCGCTTC+GGG + chr1_3:24098466-24098485 None:intergenic 60.0%
GGCACGGTCAACACCATAGC+GGG - chr1_3:24098536-24098555 Msa0110950:intron 60.0%
! ACGGTCAACACCATAGCGGG+AGG - chr1_3:24098539-24098558 Msa0110950:intron 60.0%
!! GCGGGAGGATTTTCTGGAGG+GGG - chr1_3:24098554-24098573 Msa0110950:intron 60.0%
AGCCCACCCAAATCGGCATC+GGG - chr1_3:24099272-24099291 Msa0110950:CDS 60.0%
!! CTTCCCGATGCCGATTTGGG+TGG + chr1_3:24099278-24099297 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG - chr1_3:24099334-24099353 Msa0110950:CDS 60.0%
CACCATCAGGCCAACCCAAG+TGG - chr1_3:24099347-24099366 Msa0110950:CDS 60.0%
!! ACCCACTTGGGTTGGCCTGA+TGG + chr1_3:24099352-24099371 None:intergenic 60.0%
AGGCGTGAGGTCGATACTGC+TGG - chr1_3:24099789-24099808 Msa0110950:CDS 60.0%
CACGGTGAGCCACCGTGATT+TGG + chr1_3:24100080-24100099 None:intergenic 60.0%
CTTCCCCGCCATGGATCCAT+GGG - chr1_3:24100238-24100257 Msa0110950:intron 60.0%
CAACCCATGGATCCATGGCG+GGG + chr1_3:24100244-24100263 None:intergenic 60.0%
CTCTAACACTCCCCTCAGGG+TGG + chr1_3:24101714-24101733 None:intergenic 60.0%
ACGCATGGGGAATGCAGTCG+TGG - chr1_3:24102036-24102055 Msa0110950:intron 60.0%
TGGTGGAGAGGTTTGGCTGG+AGG - chr1_3:24102334-24102353 Msa0110950:intron 60.0%
GCCCACCCAAATTGGCACCA+AGG - chr1_3:24105021-24105040 Msa0110950:CDS 60.0%
CCCGTGTTCCTACTCCCACT+TGG + chr1_3:24105115-24105134 None:intergenic 60.0%
GCAGGCAGAAGCCCTTGCTC+GGG - chr1_3:24097311-24097330 Msa0110950:intron 65.0%
AGGCCAGAGAGAGGGAGCTG+AGG - chr1_3:24097391-24097410 Msa0110950:intron 65.0%
GGCCAGAGAGAGGGAGCTGA+GGG - chr1_3:24097392-24097411 Msa0110950:intron 65.0%
CTCCCTCAGCTCCCTCTCTC+TGG + chr1_3:24097397-24097416 None:intergenic 65.0%
!! AGGATTCAGTGGGGCGCTGG+CGG + chr1_3:24097800-24097819 None:intergenic 65.0%
AGGCAGAGACCGGGCTAACG+AGG - chr1_3:24098040-24098059 Msa0110950:intron 65.0%
CCCGACGATCCTCGTTAGCC+CGG + chr1_3:24098052-24098071 None:intergenic 65.0%
CCGGGCTAACGAGGATCGTC+GGG - chr1_3:24098049-24098068 Msa0110950:intron 65.0%
GGGGGAGAAAGGCTCCCAAG+AGG - chr1_3:24098092-24098111 Msa0110950:intron 65.0%
!! GCTCCCAAGAGGTGTCCCAC+TGG - chr1_3:24098103-24098122 Msa0110950:intron 65.0%
GGTGTCCCACTGGATCGAGG+AGG - chr1_3:24098113-24098132 Msa0110950:intron 65.0%
AGGAAGGGGAGGAGGCTACC+AGG - chr1_3:24098403-24098422 Msa0110950:intron 65.0%
CCCGAAGCGAGGTCGTGGAA+AGG - chr1_3:24098463-24098482 Msa0110950:intron 65.0%
AGGATCCAGCTTCCCCGCCA+TGG - chr1_3:24100229-24100248 Msa0110950:intron 65.0%
! TGGATCCATGGCGGGGAAGC+TGG + chr1_3:24100237-24100256 None:intergenic 65.0%
GCTTCCCCGCCATGGATCCA+TGG - chr1_3:24100237-24100256 Msa0110950:intron 65.0%
GGCAGAAGCCCTTGCTCGGG+AGG - chr1_3:24097314-24097333 Msa0110950:intron 70.0%
CAGCTCGGCCTCCCGAGCAA+GGG + chr1_3:24097325-24097344 None:intergenic 70.0%
TCAGCTCGGCCTCCCGAGCA+AGG + chr1_3:24097326-24097345 None:intergenic 70.0%
GGCGGCCTCCTCGATCCAGT+GGG + chr1_3:24098121-24098140 None:intergenic 70.0%
CGATCCCCGAAGCGAGGTCG+TGG - chr1_3:24098458-24098477 Msa0110950:intron 70.0%
GGGCGGCCTCCTCGATCCAG+TGG + chr1_3:24098122-24098141 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 24097237 24105636 24097237 ID=Msa0110950;Name=Msa0110950
chr1_3 mRNA 24097237 24105636 24097237 ID=Msa0110950-mRNA-1;Parent=Msa0110950;Name=Msa0110950-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0.22|0.2|1|1|1|10|0|984
chr1_3 exon 24104177 24105636 24104177 ID=Msa0110950-mRNA-1:exon:8398;Parent=Msa0110950-mRNA-1
chr1_3 exon 24103063 24103096 24103063 ID=Msa0110950-mRNA-1:exon:8397;Parent=Msa0110950-mRNA-1
chr1_3 exon 24102366 24102433 24102366 ID=Msa0110950-mRNA-1:exon:8396;Parent=Msa0110950-mRNA-1
chr1_3 exon 24101877 24101946 24101877 ID=Msa0110950-mRNA-1:exon:8395;Parent=Msa0110950-mRNA-1
chr1_3 exon 24100794 24100875 24100794 ID=Msa0110950-mRNA-1:exon:8394;Parent=Msa0110950-mRNA-1
chr1_3 exon 24100518 24100582 24100518 ID=Msa0110950-mRNA-1:exon:8393;Parent=Msa0110950-mRNA-1
chr1_3 exon 24099079 24100089 24099079 ID=Msa0110950-mRNA-1:exon:8392;Parent=Msa0110950-mRNA-1
chr1_3 exon 24098871 24098933 24098871 ID=Msa0110950-mRNA-1:exon:8391;Parent=Msa0110950-mRNA-1
chr1_3 exon 24098740 24098786 24098740 ID=Msa0110950-mRNA-1:exon:8390;Parent=Msa0110950-mRNA-1
chr1_3 exon 24097237 24097291 24097237 ID=Msa0110950-mRNA-1:exon:8389;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24104177 24105636 24104177 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24103063 24103096 24103063 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24102366 24102433 24102366 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24101877 24101946 24101877 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24100794 24100875 24100794 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24100518 24100582 24100518 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24099079 24100089 24099079 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24098871 24098933 24098871 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24098740 24098786 24098740 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
chr1_3 CDS 24097237 24097291 24097237 ID=Msa0110950-mRNA-1:cds;Parent=Msa0110950-mRNA-1
Gene Sequence

>Msa0110950

CTGCTCGAGGCAGTGCGTGAGCTCCAAGAGCGAAATGTCGAGCAACAGAGACAAAATGACGAACATCAACGTCTGCAGGCAGAAGCCCTTGCTCGGGAGGCCGAGCTGAAGCAACAACTGGAAGATCGAGAGCGCGAGCTCAGACATCAGATGGAGGCCAGAGAGAGGGAGCTGAGGGAGCAGCTTGAGCTCTTGAGAAACAACGTGACTGGAGCTGAAACCACCAGATTGATGCCTAAAGTGTTCCAACCATTCTCGACGGAAATACAAACGGTGGAAATCCCTCGTCACTTTCGGGAACCCACCATTGACTCGTACGATGGGACGAGTGACCCACATAGTCACGTCTCAACTTTCCAAACGCAGATGTTCATAAGCGGAGCTGATGATGCATTAAGCTGCAAAATTTTTGCTGGGACCTTGAAGGGTGTAGCACATAAGTGGATAGCAGGGCTGCCTGCCAGATCAATCACAAACTTTGAGGACTTGGCCACTCGTTTCGTTGCCCAATTCGCAGCAAATACCGTGAAGCCTTTCCTACTGGCAGATTTGTTTGACATCCGCCAGCGCCCCACTGAATCCTTGAAGAGCTATCTGGCTCGGTTCAACAACGCCACTCTCATGGTGACAGAGCCAAATGAGGATATTTTTGTTATGGCATTTGAGAAGGGTCTGAACTCTGGAGCTTTTAGTGAAGCTTTGACGTTGCGCAAGGCACATTCCATGAATGAGATTCGGATGAGGGCGGAGAAGCACATTGAAGCCGAGGAGATAACAAGGGAGAAAGGATCTAGAGAGACACGAGGCAGAGACCGGGCTAACGAGGATCGTCGGGAAGGAGTGATGAAAAGGCTAGGGGGAGAAAGGCTCCCAAGAGGTGTCCCACTGGATCGAGGAGGCCGCCCAGAGCGTGAAGTCCCTATCAGAAGGAACCCATGGGAGGAAAATTTCACTCCTCTCAACAAGGGAAGAGCTCAAATACTCAAAGAGGTTATGAACACTCAGATTATCAAGCGACCGCCTCCAAACCCTCGTCCTATGGGGAGTGAAGCAGGGTTGTGGTGTGAATACCATCGCACCCAAGGACACGATACCGACAACTGTCGTACCCTTCGAATGCACATTGAAAAGTTGATACAAGAGGGTCACCTTGGGCGCTACGTTCAAGGAAGGGGAGGAGGCTACCAGGACAAAAGGGCTGCTCCTAGTAGAGATTCAAGTCGATCCCCGAAGCGAGGTCGTGGAAAGGAGAAGCTTCATGACAAAGAAGCTGAAGGAGGGCACGAAAGGAACAACAGAGGCACGGTCAACACCATAGCGGGAGGATTTTCTGGAGGGGGATCAACTAGCTCGGCCAGAAGAAGATATTCACGGTCCAACCAATCTTGCAATATGGTGGGAGTGTATGCTTTTAAAGAGCACCCTCAATTAGCTTTTACCTTCAAAGATTTTGAAGGACTGAAAACTTGGGTAGGCGTGAGGTCGATACTGCTGGGAACAAGTGATCCGTATGTGGTCCTACAGATGGGTTCTCAGACTGCTAAAAGCAATATCAAATGGGGGACAAAAGAGCCAACATGGAATGAGGAGTTCACTTTTAATTTTAAGCGGTCGGGGATGAAACCTCTACAGGTTGCAGCTTGGGATGCAAACCTTGTAACCCCACACAAACGCATGGGGAATGCAGTCGTGGATTTGGAATGGCTTTGTGATGGAGATACGCATGAAATACTGGTGGAGTTGGAAGGAATGGGTAGTGGTGGAGAGGTTTGGCTGGAGGTCAAATATAAGACCTTTGAAGAAATTGATGATGAAAAAAAGTGGTGGAGGATACCTTTTGTTTCAGACTTTTTAAAGAATACTGGTTTTGATTCTGCACTCAGAAAGGTTACTGGTTCTGATACAGTCCAAGTCAGCCAATTTGTAGAATATGCATTCGGGCAGTTAAAGTCTTTTAACAATGAGAAGGTCCGGATGTCTGATACTGATAATGATAAATATGATATTGAAAGCTCTGGGAAATCAAATAATGATACTGGTAGTTCAGAAGCCTCTAATGAAGCTTCTAGTGAACAAAGAAACATGGAAGAGTTTCGTTCATGTGACAGTGAAACTGAAAATGGACACGCTTTGGAAGCATCACCACAAGCTAGTGAGGAAGAGTTGTCAAATCAACGTTTTTGGAAGAATTTTTCTAAAGTTATCAATGCTAACGTTGTTCAAAAGTTGGGTCTCTCTGTTCCTGAGAAATTAAAGTGGGATGGACTGGAGTTCCTAAACAAAATTGGTTCGCAATCACAAAATGTTGCAGAAGATATTTATATTGAATCTGGTCTTGCAATGCCTGAAAGCACAGAAATATCGGATAATAAAACAAGTGGTCAACCTTCCATTGCTGCAATTCAGTCTTCACTTCCAGAGGTAAAAAAGGCAACAGAGACTTTGATGAAGCAAACTGAATCAATTTTAGGAGGTTTAATGCTTTTGACCGCAACAGTTTCCAAAATGAAAGATGAAAGGCGTTCTTCTGAAGAGAGGAAAACCAAAGAAGATTCTACCGAAGGAGTAGGCAGTGACATTCAATATTCTGCTAGTGAAAAGTCTCCTACCCCAGAAAATGGATCATTGTTGGACGATAAAAAAACTGAAGAGATGAAAGCACTTTTTTCAACTGCTGAAAGTGCCATGGAGGCTTGGACAATGCTGGCCACTTCACTAGGTCATCCAAGTTTCATCAAGTCTGAGTTCGAAAAGATATGTTTCGTAGATAATGCATCCACTGACACACAGGTTGCAATTTGGCGTGATTCTGCACGAAGAAGATTAGTGATTGCATTTCGGGGAACAGAACAGACGCAATGGAAGGACTTAGTAACGGATCTAATGCTTGTTCCAGCCGGGCTGAATCCTGAAAGGATAGGTGGAGATTTCAAGCAAGAGGTTCAAGTATGTTAG
Protein sequence

>Msa0110950

LLEAVRELQERNVEQQRQNDEHQRLQAEALAREAELKQQLEDRERELRHQMEARERELREQLELLRNNVTGAETTRLMPKVFQPFSTEIQTVEIPRHFREPTIDSYDGTSDPHSHVSTFQTQMFISGADDALSCKIFAGTLKGVAHKWIAGLPARSITNFEDLATRFVAQFAANTVKPFLLADLFDIRQRPTESLKSYLARFNNATLMVTEPNEDIFVMAFEKGLNSGAFSEALTLRKAHSMNEIRMRAEKHIEAEEITREKGSRETRGRDRANEDRREGVMKRLGGERLPRGVPLDRGGRPEREVPIRRNPWEENFTPLNKGRAQILKEVMNTQIIKRPPPNPRPMGSEAGLWCEYHRTQGHDTDNCRTLRMHIEKLIQEGHLGRYVQGRGGGYQDKRAAPSRDSSRSPKRGRGKEKLHDKEAEGGHERNNRGTVNTIAGGFSGGGSTSSARRRYSRSNQSCNMVGVYAFKEHPQLAFTFKDFEGLKTWVGVRSILLGTSDPYVVLQMGSQTAKSNIKWGTKEPTWNEEFTFNFKRSGMKPLQVAAWDANLVTPHKRMGNAVVDLEWLCDGDTHEILVELEGMGSGGEVWLEVKYKTFEEIDDEKKWWRIPFVSDFLKNTGFDSALRKVTGSDTVQVSQFVEYAFGQLKSFNNEKVRMSDTDNDKYDIESSGKSNNDTGSSEASNEASSEQRNMEEFRSCDSETENGHALEASPQASEEELSNQRFWKNFSKVINANVVQKLGLSVPEKLKWDGLEFLNKIGSQSQNVAEDIYIESGLAMPESTEISDNKTSGQPSIAAIQSSLPEVKKATETLMKQTESILGGLMLLTATVSKMKDERRSSEERKTKEDSTEGVGSDIQYSASEKSPTPENGSLLDDKKTEEMKALFSTAESAMEAWTMLATSLGHPSFIKSEFEKICFVDNASTDTQVAIWRDSARRRLVIAFRGTEQTQWKDLVTDLMLVPAGLNPERIGGDFKQEVQVC*