AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118980 MtrunA17_Chr1g0176451 92.308 338 26 0 1 338 250 587 0.0 647
Msa0118980 MtrunA17_Chr1g0176441 85.591 347 40 2 1 338 397 742 0.0 600
Msa0118980 MtrunA17_Chr7g0267971 77.233 347 69 2 1 338 386 731 0.0 521
Msa0118980 MtrunA17_Chr1g0198931 43.662 355 175 5 1 338 335 681 6.22e-89 280
Msa0118980 MtrunA17_Chr5g0408061 40.503 358 182 6 1 336 290 638 4.68e-84 266
Msa0118980 MtrunA17_Chr8g0359931 39.205 352 182 4 1 335 291 627 1.08e-77 249
Msa0118980 MtrunA17_Chr1g0200651 37.808 365 186 6 1 336 316 668 1.74e-73 239
Msa0118980 MtrunA17_Chr2g0318071 46.696 227 105 3 125 335 7 233 4.48e-66 208
Msa0118980 MtrunA17_Chr5g0446901 42.279 272 146 5 1 268 338 602 8.35e-59 199
Msa0118980 MtrunA17_Chr3g0102731 41.636 269 152 2 1 268 323 587 2.45e-57 195
Msa0118980 MtrunA17_Chr1g0208391 25.728 206 145 5 82 282 391 593 5.47e-18 85.1
Msa0118980 MtrunA17_Chr2g0318061 33.577 137 75 3 1 137 256 376 2.30e-15 76.3
Msa0118980 MtrunA17_Chr4g0069221 25.500 200 145 2 100 295 116 315 2.40e-13 70.5
Msa0118980 MtrunA17_Chr0c20g0493841 25.500 200 145 2 100 295 1171 1370 6.82e-13 69.7
Msa0118980 MtrunA17_Chr4g0050261 25.681 257 169 10 69 312 403 650 3.15e-12 67.8
Msa0118980 MtrunA17_Chr2g0316301 23.387 248 166 4 108 332 381 627 8.52e-12 66.2
Msa0118980 MtrunA17_Chr1g0213091 25.234 214 155 4 97 307 460 671 1.28e-11 65.9
Msa0118980 MtrunA17_Chr7g0263351 24.537 216 157 4 96 307 454 667 2.90e-11 64.7
Msa0118980 MtrunA17_Chr1g0148811 23.377 231 167 4 100 326 1167 1391 4.02e-11 64.3
Msa0118980 MtrunA17_Chr3g0102741 37.209 86 38 1 265 334 2 87 4.78e-11 58.5
Msa0118980 MtrunA17_Chr8g0384391 23.984 246 165 6 108 333 391 634 4.82e-11 63.9
Msa0118980 MtrunA17_Chr3g0104621 22.271 229 171 3 100 324 1083 1308 8.60e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118980 AT5G06530.2 72.832 346 84 2 1 337 405 749 0.0 527
Msa0118980 AT5G06530.1 72.832 346 84 2 1 337 405 749 0.0 527
Msa0118980 AT5G06530.4 70.979 286 73 2 1 277 210 494 3.02e-145 419
Msa0118980 AT5G06530.3 70.979 286 73 2 1 277 405 689 1.52e-143 422
Msa0118980 AT1G31770.1 40.282 355 183 6 1 338 306 648 1.75e-82 263
Msa0118980 AT3G25620.2 41.525 354 182 6 1 335 325 672 2.48e-81 260
Msa0118980 AT4G27420.1 41.477 352 175 5 1 335 295 632 2.31e-78 252
Msa0118980 AT1G71960.1 40.548 365 175 6 1 336 310 661 3.19e-76 247
Msa0118980 AT3G13220.1 37.960 353 195 4 1 334 331 678 7.43e-74 241
Msa0118980 AT2G01320.8 26.117 291 187 8 1 282 319 590 1.36e-23 102
Msa0118980 AT2G01320.5 26.117 291 187 8 1 282 319 590 1.36e-23 102
Msa0118980 AT2G01320.3 26.117 291 187 8 1 282 319 590 2.16e-23 101
Msa0118980 AT2G01320.2 26.117 291 187 8 1 282 319 590 2.18e-23 101
Msa0118980 AT2G01320.1 26.117 291 187 8 1 282 319 590 2.21e-23 101
Msa0118980 AT2G01320.4 26.117 291 187 8 1 282 319 590 2.21e-23 101
Msa0118980 AT3G25620.1 36.170 141 80 4 1 137 325 459 5.94e-17 82.0
Msa0118980 AT4G15233.5 25.076 331 217 9 2 326 911 1216 1.00e-15 79.0
Msa0118980 AT4G15233.4 25.076 331 217 9 2 326 911 1216 1.00e-15 79.0
Msa0118980 AT4G15233.3 25.076 331 217 9 2 326 992 1297 1.38e-15 78.6
Msa0118980 AT4G15233.6 25.076 331 217 9 2 326 992 1297 1.38e-15 78.6
Msa0118980 AT4G15233.7 24.373 279 200 4 54 326 1068 1341 1.42e-15 78.6
Msa0118980 AT4G15233.1 24.373 279 200 4 54 326 1086 1359 1.64e-15 78.2
Msa0118980 AT2G01320.7 25.581 215 138 5 1 210 319 516 1.70e-15 77.8
Msa0118980 AT2G01320.6 25.581 215 138 5 1 210 319 516 1.70e-15 77.8
Msa0118980 AT4G15233.8 24.373 279 200 4 54 326 1077 1350 1.76e-15 78.2
Msa0118980 AT1G59870.1 30.220 182 125 1 100 279 1207 1388 2.52e-15 77.8
Msa0118980 AT4G15236.1 25.378 331 216 8 2 326 1052 1357 4.30e-15 77.0
Msa0118980 AT2G37280.4 24.706 255 182 5 77 325 971 1221 1.71e-14 75.1
Msa0118980 AT2G37280.3 24.706 255 182 5 77 325 1158 1408 2.00e-14 75.1
Msa0118980 AT4G15230.4 24.324 333 215 9 2 325 983 1287 2.21e-14 74.7
Msa0118980 AT2G37280.1 24.706 255 182 5 77 325 1129 1379 2.48e-14 74.7
Msa0118980 AT3G53480.1 21.581 329 229 6 2 325 1112 1416 2.73e-14 74.7
Msa0118980 AT4G15233.2 23.729 236 173 2 54 282 1086 1321 2.78e-14 74.7
Msa0118980 AT4G15230.3 24.324 333 215 9 2 325 1062 1366 2.86e-14 74.7
Msa0118980 AT4G15230.1 24.324 333 215 9 2 325 1062 1366 2.86e-14 74.7
Msa0118980 AT2G37360.1 25.243 206 150 3 96 299 460 663 2.60e-13 71.2
Msa0118980 AT1G15210.1 27.473 182 130 1 100 279 1180 1361 3.85e-13 71.2
Msa0118980 AT4G15215.8 25.197 254 183 3 76 325 1103 1353 5.16e-13 70.9
Msa0118980 AT4G15215.10 25.197 254 183 3 76 325 1103 1353 5.16e-13 70.9
Msa0118980 AT4G15215.6 25.197 254 183 3 76 325 1103 1353 5.16e-13 70.9
Msa0118980 AT4G15215.7 25.197 254 183 3 76 325 1103 1353 5.16e-13 70.9
Msa0118980 AT4G15215.1 25.197 254 183 3 76 325 1106 1356 5.55e-13 70.5
Msa0118980 AT4G15215.9 25.197 254 183 3 76 325 1110 1360 5.86e-13 70.5
Msa0118980 AT4G15215.4 25.197 254 183 3 76 325 1110 1360 5.86e-13 70.5
Msa0118980 AT4G15215.5 25.197 254 183 3 76 325 1110 1360 5.86e-13 70.5
Msa0118980 AT4G15215.3 25.197 254 183 3 76 325 1110 1360 5.86e-13 70.5
Msa0118980 AT4G15215.2 25.197 254 183 3 76 325 1110 1360 5.86e-13 70.5
Msa0118980 AT4G15215.11 25.197 254 183 3 76 325 1113 1363 5.91e-13 70.5
Msa0118980 AT5G13580.1 26.222 225 160 5 87 307 422 644 2.82e-12 68.2
Msa0118980 AT3G53510.1 25.991 227 163 4 84 307 432 656 4.03e-12 67.8
Msa0118980 AT3G16340.2 28.235 170 120 1 112 279 1161 1330 8.48e-12 67.0
Msa0118980 AT3G16340.1 28.235 170 120 1 112 279 1166 1335 8.79e-12 67.0
Msa0118980 AT2G37280.2 25.000 196 144 2 77 269 1129 1324 1.79e-11 65.9
Msa0118980 AT3G55110.1 24.034 233 160 7 107 331 424 647 6.19e-11 63.9
Msa0118980 AT3G55090.1 23.502 217 157 5 96 307 441 653 9.16e-11 63.5

Find 58 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGATCTTGCAGATCTTT+TGG 0.163290 1_3:+42267203 None:intergenic
TCTACTTATTGTTTACTTCA+TGG 0.221990 1_3:-42266719 Msa0118980:CDS
TGCTATCGGTGCTGTGCTTA+TGG 0.245133 1_3:-42266349 Msa0118980:CDS
AAGTCCCAATATTCATTTCT+TGG 0.258096 1_3:-42266163 Msa0118980:CDS
TTATCCACTGCAATCATCTT+AGG 0.258217 1_3:-42267257 Msa0118980:CDS
CATCTCACACCTATCGTAAA+TGG 0.266144 1_3:-42266080 Msa0118980:CDS
CGGATCCAAGAAATGAATAT+TGG 0.321371 1_3:+42266158 None:intergenic
TTTCATTATTACTGTGTTCT+GGG 0.327407 1_3:-42266896 Msa0118980:CDS
AGAGAGAGCCATGTTGAATA+AGG 0.365616 1_3:-42266833 Msa0118980:CDS
GATTCCTCTACACAAAAGTA+TGG 0.371703 1_3:+42267328 None:intergenic
GGAGAATGAAACTTCAATAA+AGG 0.373365 1_3:-42265971 None:intergenic
TTGAAGGATAAAGTGCATAT+TGG 0.393759 1_3:-42267661 Msa0118980:CDS
CTTATTGTTTACTTCATGGC+TGG 0.398020 1_3:-42266715 Msa0118980:CDS
CCTCTGCATCATTGCAGCTC+AGG 0.398239 1_3:-42266644 Msa0118980:intron
ACTGATAATATCAGGTCTAA+TGG 0.406037 1_3:+42266748 None:intergenic
TTGGTTGTGAAGCAGGGTCT+TGG 0.410473 1_3:-42266375 Msa0118980:intron
AAGACAATGGGGAGCAAGTT+GGG 0.422844 1_3:-42267363 Msa0118980:CDS
TTCCGTACCATCAGAGTTGA+AGG 0.443541 1_3:-42267677 Msa0118980:CDS
GGATCCAAGAAATGAATATT+GGG 0.448204 1_3:+42266159 None:intergenic
AACATCATTAATGTTTCCAT+TGG 0.449182 1_3:+42267699 None:intergenic
GTCTTTAAAGCTTCATCTTG+TGG 0.455011 1_3:+42267407 None:intergenic
CCCAAAAGATCTGCAAGATC+AGG 0.464297 1_3:-42267204 Msa0118980:intron
CGCACGTTCCTTATTCAACA+TGG 0.471518 1_3:+42266825 None:intergenic
ATCCTTCAACTCTGATGGTA+CGG 0.496329 1_3:+42267675 None:intergenic
AAAGACAATGGGGAGCAAGT+TGG 0.501252 1_3:-42267364 Msa0118980:CDS
TAAAGCTTCATCTTGTGGCA+TGG 0.508391 1_3:+42267412 None:intergenic
TTTGTCGCCTAAAAGACAAT+GGG 0.509401 1_3:-42267375 Msa0118980:CDS
AGTAGCTGCTCTAATTTCCA+TGG 0.518500 1_3:-42266030 Msa0118980:CDS
GTGATGATCTTCATGCTGGC+AGG 0.525792 1_3:-42266291 Msa0118980:CDS
CATTAATGTTTCCATTGGCA+AGG 0.526585 1_3:+42267704 None:intergenic
TTCAACATGGCTCTCTCTTG+AGG 0.528665 1_3:+42266838 None:intergenic
CAGGGTCTTGGACTTGCTAT+CGG 0.529758 1_3:-42266363 Msa0118980:CDS
CAATCATCTTAGGATCCCTC+TGG 0.538332 1_3:-42267247 Msa0118980:CDS
GTTACCTCATGGACTACTGC+TGG 0.555485 1_3:+42267628 None:intergenic
ACTTTATCCTTCAACTCTGA+TGG 0.556099 1_3:+42267670 None:intergenic
TGAGCAAAAGTTTGTAAGTG+TGG 0.556530 1_3:+42266117 None:intergenic
TTCATTATTACTGTGTTCTG+GGG 0.560260 1_3:-42266895 Msa0118980:CDS
AACTGTGATGATCTTCATGC+TGG 0.573848 1_3:-42266295 Msa0118980:CDS
AATATCTGATTGCCACCAGA+GGG 0.593549 1_3:+42267232 None:intergenic
ATAATATCAGGTCTAATGGA+AGG 0.595663 1_3:+42266752 None:intergenic
GTTTGTCGCCTAAAAGACAA+TGG 0.599091 1_3:-42267376 Msa0118980:CDS
TGTGTAGAGGAATCAAGGAA+AGG 0.599178 1_3:-42267319 Msa0118980:CDS
CAATATCTGATTGCCACCAG+AGG 0.600911 1_3:+42267231 None:intergenic
GGTCGCTCGTTGTTCTAGCA+AGG 0.614393 1_3:+42266773 None:intergenic
CCTGAGCTGCAATGATGCAG+AGG 0.626912 1_3:+42266644 None:intergenic
TCATCTTAGGATCCCTCTGG+TGG 0.635798 1_3:-42267244 Msa0118980:CDS
ACGAAAGATATGCCAAGAAG+CGG 0.637992 1_3:+42265997 None:intergenic
GGATCCTAAGATGATTGCAG+TGG 0.650772 1_3:+42267253 None:intergenic
GCTTATTTCTATGAATCCAG+CGG 0.651580 1_3:-42267740 None:intergenic
TCTTGGCATATCTTTCGTTG+CGG 0.651786 1_3:-42265992 Msa0118980:CDS
CATGTTGAATAAGGAACGTG+CGG 0.652340 1_3:-42266824 Msa0118980:CDS
GGTAGTTGAAAGACATGTAG+CGG 0.654216 1_3:+42266138 None:intergenic
ATGATCTTCATGCTGGCAGG+AGG 0.666647 1_3:-42266288 Msa0118980:CDS
GTAGAGGAATCAAGGAAAGG+AGG 0.673655 1_3:-42267316 Msa0118980:CDS
GCAGAGGAAAACAGTAACAA+CGG 0.689808 1_3:+42266660 None:intergenic
AATGGAGTCAAAATTGACAG+CGG 0.709996 1_3:-42266062 Msa0118980:CDS
AGAACCAGCAGTAGTCCATG+AGG 0.724772 1_3:-42267632 Msa0118980:intron
TTGTCGCCTAAAAGACAATG+GGG 0.747369 1_3:-42267374 Msa0118980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACAATAAAAACTAAAGT+TGG - chr1_3:42267106-42267125 Msa0118980:intron 15.0%
!! TTAGATTATAGATATAACAA+TGG - chr1_3:42267306-42267325 Msa0118980:CDS 15.0%
!! TTGATCATAAAATTTATACT+TGG + chr1_3:42267451-42267470 None:intergenic 15.0%
!! ACAGAGAAGAAAAAAATAAT+TGG - chr1_3:42266267-42266286 Msa0118980:intron 20.0%
!! GAATAAAAGTTTATCTTTGT+TGG - chr1_3:42266652-42266671 Msa0118980:CDS 20.0%
!! ATTATAGATATAACAATGGT+TGG - chr1_3:42267310-42267329 Msa0118980:CDS 20.0%
! AACATCATTAATGTTTCCAT+TGG + chr1_3:42266008-42266027 None:intergenic 25.0%
!! ATTCGAAATTTAGAATAGAG+AGG - chr1_3:42266161-42266180 Msa0118980:CDS 25.0%
! GTTATAGACTAAAAATTCAG+TGG - chr1_3:42266535-42266554 Msa0118980:intron 25.0%
! CACAAATGTTTAATATGTCA+AGG + chr1_3:42266769-42266788 None:intergenic 25.0%
! CTTGACATATTAAACATTTG+TGG - chr1_3:42266767-42266786 Msa0118980:CDS 25.0%
!! TTTTCATTATTACTGTGTTC+TGG - chr1_3:42266807-42266826 Msa0118980:CDS 25.0%
! TTTCATTATTACTGTGTTCT+GGG - chr1_3:42266808-42266827 Msa0118980:CDS 25.0%
! GTAAATATTGCTGTAAAAAC+TGG + chr1_3:42266842-42266861 None:intergenic 25.0%
! TCTACTTATTGTTTACTTCA+TGG - chr1_3:42266985-42267004 Msa0118980:intron 25.0%
! TTATGATCAAATAGTTGACA+TGG - chr1_3:42267461-42267480 Msa0118980:CDS 25.0%
! AAATTCTTCTGTTAATAGAC+TGG + chr1_3:42267496-42267515 None:intergenic 25.0%
! TAACAGAAGAATTTAACATG+TGG - chr1_3:42267502-42267521 Msa0118980:intron 25.0%
TTGAAGGATAAAGTGCATAT+TGG - chr1_3:42266043-42266062 Msa0118980:CDS 30.0%
AAAAAGGAAATGTTACCTCA+TGG + chr1_3:42266090-42266109 None:intergenic 30.0%
TAAAATTCAATCCGAAGTGT+TGG + chr1_3:42266136-42266155 None:intergenic 30.0%
AAATTCATCCTTTGTGAGAT+GGG + chr1_3:42266205-42266224 None:intergenic 30.0%
AAAATTCATCCTTTGTGAGA+TGG + chr1_3:42266206-42266225 None:intergenic 30.0%
!! GGATGAATTTTAACAGTATC+TGG - chr1_3:42266215-42266234 Msa0118980:intron 30.0%
!! TGAATTTTAACAGTATCTGG+TGG - chr1_3:42266218-42266237 Msa0118980:intron 30.0%
! TTTTCCATACTTTTGTGTAG+AGG - chr1_3:42266372-42266391 Msa0118980:intron 30.0%
! TGTGGCATTTTATACTTTGA+TGG + chr1_3:42266569-42266588 None:intergenic 30.0%
GAAAACGTTTAATTGACGAT+AGG + chr1_3:42266599-42266618 None:intergenic 30.0%
!! AAATGTTGGTCTTATTATGC+GGG + chr1_3:42266682-42266701 None:intergenic 30.0%
!! CAAATGTTGGTCTTATTATG+CGG + chr1_3:42266683-42266702 None:intergenic 30.0%
CATAATAAGACCAACATTTG+TGG - chr1_3:42266683-42266702 Msa0118980:CDS 30.0%
ATTATGCAAACCACAAATGT+TGG + chr1_3:42266696-42266715 None:intergenic 30.0%
GTTTAATATGTCAAGGTAAG+AGG + chr1_3:42266762-42266781 None:intergenic 30.0%
! ATTAAACATTTGTGGTTTGC+AGG - chr1_3:42266775-42266794 Msa0118980:CDS 30.0%
TTCATTATTACTGTGTTCTG+GGG - chr1_3:42266809-42266828 Msa0118980:CDS 30.0%
ATAATATCAGGTCTAATGGA+AGG + chr1_3:42266955-42266974 None:intergenic 30.0%
ACTGATAATATCAGGTCTAA+TGG + chr1_3:42266959-42266978 None:intergenic 30.0%
!! GAAAAAGCACTGATAATATC+AGG + chr1_3:42266967-42266986 None:intergenic 30.0%
! AACCAGCTTTTATTACAGTT+CGG - chr1_3:42267173-42267192 Msa0118980:intron 30.0%
TTACAGTTCGGTTATTATAG+AGG - chr1_3:42267185-42267204 Msa0118980:intron 30.0%
! GCTTGAACTAAGTTGAATTT+GGG + chr1_3:42267217-42267236 None:intergenic 30.0%
! TGCTTGAACTAAGTTGAATT+TGG + chr1_3:42267218-42267237 None:intergenic 30.0%
AAGTCCCAATATTCATTTCT+TGG - chr1_3:42267541-42267560 Msa0118980:intron 30.0%
GGATCCAAGAAATGAATATT+GGG + chr1_3:42267548-42267567 None:intergenic 30.0%
!!! ATTTTGACTCCATTTACGAT+AGG + chr1_3:42267636-42267655 None:intergenic 30.0%
CATTAATGTTTCCATTGGCA+AGG + chr1_3:42266003-42266022 None:intergenic 35.0%
ACTTTATCCTTCAACTCTGA+TGG + chr1_3:42266037-42266056 None:intergenic 35.0%
TAGCTGTAGTAAAGGCAAAA+AGG + chr1_3:42266106-42266125 None:intergenic 35.0%
TAGAATAGAGAGGAATTGAG+AGG - chr1_3:42266171-42266190 Msa0118980:intron 35.0%
! AGAATTTTCCCATCTCACAA+AGG - chr1_3:42266194-42266213 Msa0118980:intron 35.0%
!! ATTTTAACAGTATCTGGTGG+AGG - chr1_3:42266221-42266240 Msa0118980:intron 35.0%
!! GTCTTTAAAGCTTCATCTTG+TGG + chr1_3:42266300-42266319 None:intergenic 35.0%
TTTGTCGCCTAAAAGACAAT+GGG - chr1_3:42266329-42266348 Msa0118980:CDS 35.0%
GATTCCTCTACACAAAAGTA+TGG + chr1_3:42266379-42266398 None:intergenic 35.0%
! ACTTTTGTGTAGAGGAATCA+AGG - chr1_3:42266380-42266399 Msa0118980:intron 35.0%
TTATCCACTGCAATCATCTT+AGG - chr1_3:42266447-42266466 Msa0118980:intron 35.0%
GTTTAATTGACGATAGGATC+TGG + chr1_3:42266593-42266612 None:intergenic 35.0%
CTTATTGTTTACTTCATGGC+TGG - chr1_3:42266989-42267008 Msa0118980:intron 35.0%
AGTAACAACGGTGAGAAAAA+AGG + chr1_3:42267035-42267054 None:intergenic 35.0%
ACCAAACCAAACAGTTCAAT+CGG - chr1_3:42267140-42267159 Msa0118980:intron 35.0%
! CTGTAATAAAAGCTGGTTCA+AGG + chr1_3:42267171-42267190 None:intergenic 35.0%
AACCGAACTGTAATAAAAGC+TGG + chr1_3:42267178-42267197 None:intergenic 35.0%
AACTTAGTTCAAGCAGCTTA+AGG - chr1_3:42267223-42267242 Msa0118980:CDS 35.0%
TCAATGTTCAAACACTGAAC+CGG + chr1_3:42267276-42267295 None:intergenic 35.0%
CGGATCCAAGAAATGAATAT+TGG + chr1_3:42267549-42267568 None:intergenic 35.0%
TGAGCAAAAGTTTGTAAGTG+TGG + chr1_3:42267590-42267609 None:intergenic 35.0%
! CACTTACAAACTTTTGCTCA+AGG - chr1_3:42267590-42267609 Msa0118980:intron 35.0%
AATGGAGTCAAAATTGACAG+CGG - chr1_3:42267642-42267661 Msa0118980:CDS 35.0%
! GCTCTAATTTCCATGGTTTT+TGG - chr1_3:42267681-42267700 Msa0118980:CDS 35.0%
! TTTTTGCTTGACCTTGCCAA+TGG - chr1_3:42265989-42266008 Msa0118980:CDS 40.0%
ATCCTTCAACTCTGATGGTA+CGG + chr1_3:42266032-42266051 None:intergenic 40.0%
TAAAGCTTCATCTTGTGGCA+TGG + chr1_3:42266295-42266314 None:intergenic 40.0%
GTTTGTCGCCTAAAAGACAA+TGG - chr1_3:42266328-42266347 Msa0118980:CDS 40.0%
TTGTCGCCTAAAAGACAATG+GGG - chr1_3:42266330-42266349 Msa0118980:CDS 40.0%
TGTGTAGAGGAATCAAGGAA+AGG - chr1_3:42266385-42266404 Msa0118980:intron 40.0%
AATATCTGATTGCCACCAGA+GGG + chr1_3:42266475-42266494 None:intergenic 40.0%
! CCTGATCTTGCAGATCTTTT+GGG + chr1_3:42266503-42266522 None:intergenic 40.0%
! ACCTGATCTTGCAGATCTTT+TGG + chr1_3:42266504-42266523 None:intergenic 40.0%
AGAGAGAGCCATGTTGAATA+AGG - chr1_3:42266871-42266890 Msa0118980:CDS 40.0%
CATGTTGAATAAGGAACGTG+CGG - chr1_3:42266880-42266899 Msa0118980:CDS 40.0%
AACAACGGTGAGAAAAAAGG+AGG + chr1_3:42267032-42267051 None:intergenic 40.0%
GCAGAGGAAAACAGTAACAA+CGG + chr1_3:42267047-42267066 None:intergenic 40.0%
ACCGATTGAACTGTTTGGTT+TGG + chr1_3:42267144-42267163 None:intergenic 40.0%
AAACCAAACAGTTCAATCGG+TGG - chr1_3:42267143-42267162 Msa0118980:intron 40.0%
TTAGTTCAAGCAGCTTAAGG+TGG - chr1_3:42267226-42267245 Msa0118980:CDS 40.0%
AACTGTGATGATCTTCATGC+TGG - chr1_3:42267409-42267428 Msa0118980:CDS 40.0%
GGTAGTTGAAAGACATGTAG+CGG + chr1_3:42267569-42267588 None:intergenic 40.0%
CATCTCACACCTATCGTAAA+TGG - chr1_3:42267624-42267643 Msa0118980:intron 40.0%
AGTAGCTGCTCTAATTTCCA+TGG - chr1_3:42267674-42267693 Msa0118980:CDS 40.0%
ACGAAAGATATGCCAAGAAG+CGG + chr1_3:42267710-42267729 None:intergenic 40.0%
TCTTGGCATATCTTTCGTTG+CGG - chr1_3:42267712-42267731 Msa0118980:CDS 40.0%
TTCCGTACCATCAGAGTTGA+AGG - chr1_3:42266027-42266046 Msa0118980:CDS 45.0%
! CTTGCTCCCCATTGTCTTTT+AGG + chr1_3:42266339-42266358 None:intergenic 45.0%
AAAGACAATGGGGAGCAAGT+TGG - chr1_3:42266340-42266359 Msa0118980:CDS 45.0%
AAGACAATGGGGAGCAAGTT+GGG - chr1_3:42266341-42266360 Msa0118980:CDS 45.0%
GTAGAGGAATCAAGGAAAGG+AGG - chr1_3:42266388-42266407 Msa0118980:intron 45.0%
!!! GGAGGCACAACTATTTTAGC+TGG - chr1_3:42266406-42266425 Msa0118980:intron 45.0%
GGATCCTAAGATGATTGCAG+TGG + chr1_3:42266454-42266473 None:intergenic 45.0%
CAATCATCTTAGGATCCCTC+TGG - chr1_3:42266457-42266476 Msa0118980:intron 45.0%
CAATATCTGATTGCCACCAG+AGG + chr1_3:42266476-42266495 None:intergenic 45.0%
CCCAAAAGATCTGCAAGATC+AGG - chr1_3:42266500-42266519 Msa0118980:intron 45.0%
TTGACGATAGGATCTGGATG+TGG + chr1_3:42266587-42266606 None:intergenic 45.0%
! AACATTTGTGGTTTGCAGGC+AGG - chr1_3:42266779-42266798 Msa0118980:CDS 45.0%
TTCAACATGGCTCTCTCTTG+AGG + chr1_3:42266869-42266888 None:intergenic 45.0%
CGCACGTTCCTTATTCAACA+TGG + chr1_3:42266882-42266901 None:intergenic 45.0%
! GTTCCACCGATTGAACTGTT+TGG + chr1_3:42267149-42267168 None:intergenic 45.0%
GTGGTTGAATCATGACCTAG+AGG - chr1_3:42267245-42267264 Msa0118980:CDS 45.0%
! ACAATGGTTGGTTGTGAAGC+AGG - chr1_3:42267322-42267341 Msa0118980:CDS 45.0%
! CAATGGTTGGTTGTGAAGCA+GGG - chr1_3:42267323-42267342 Msa0118980:CDS 45.0%
GAAGCGGTAACCAAAAACCA+TGG + chr1_3:42267694-42267713 None:intergenic 45.0%
!!! GGTTTTTGGTTACCGCTTCT+TGG - chr1_3:42267695-42267714 Msa0118980:CDS 45.0%
AGGTCAAGCAAAAACTCCGC+TGG + chr1_3:42265983-42266002 None:intergenic 50.0%
AGAACCAGCAGTAGTCCATG+AGG - chr1_3:42266072-42266091 Msa0118980:CDS 50.0%
! GTTACCTCATGGACTACTGC+TGG + chr1_3:42266079-42266098 None:intergenic 50.0%
GTGCTGCGTAGCTGTAGTAA+AGG + chr1_3:42266114-42266133 None:intergenic 50.0%
TCATCTTAGGATCCCTCTGG+TGG - chr1_3:42266460-42266479 Msa0118980:intron 50.0%
TCATGACCTAGAGGTCTCAC+CGG - chr1_3:42267254-42267273 Msa0118980:CDS 50.0%
TTGGTTGTGAAGCAGGGTCT+TGG - chr1_3:42267329-42267348 Msa0118980:CDS 50.0%
!! CAGGGTCTTGGACTTGCTAT+CGG - chr1_3:42267341-42267360 Msa0118980:CDS 50.0%
!! TGCTATCGGTGCTGTGCTTA+TGG - chr1_3:42267355-42267374 Msa0118980:CDS 50.0%
GTGATGATCTTCATGCTGGC+AGG - chr1_3:42267413-42267432 Msa0118980:CDS 50.0%
ATGATCTTCATGCTGGCAGG+AGG - chr1_3:42267416-42267435 Msa0118980:CDS 50.0%
GCTACGCAGCACCAACACTT+CGG - chr1_3:42266122-42266141 Msa0118980:CDS 55.0%
GGTCGCTCGTTGTTCTAGCA+AGG + chr1_3:42266934-42266953 None:intergenic 55.0%
CCTGAGCTGCAATGATGCAG+AGG + chr1_3:42267063-42267082 None:intergenic 55.0%
CCTCTGCATCATTGCAGCTC+AGG - chr1_3:42267060-42267079 Msa0118980:intron 55.0%
ACTGAACCGGTGAGACCTCT+AGG + chr1_3:42267263-42267282 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 42265974 42267752 42265974 ID=Msa0118980;Name=Msa0118980
chr1_3 mRNA 42265974 42267752 42265974 ID=Msa0118980-mRNA-1;Parent=Msa0118980;Name=Msa0118980-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.25|0|1|1|1|5|0|338
chr1_3 exon 42267633 42267752 42267633 ID=Msa0118980-mRNA-1:exon:12786;Parent=Msa0118980-mRNA-1
chr1_3 exon 42267205 42267495 42267205 ID=Msa0118980-mRNA-1:exon:12785;Parent=Msa0118980-mRNA-1
chr1_3 exon 42266645 42266929 42266645 ID=Msa0118980-mRNA-1:exon:12784;Parent=Msa0118980-mRNA-1
chr1_3 exon 42266275 42266382 42266275 ID=Msa0118980-mRNA-1:exon:12783;Parent=Msa0118980-mRNA-1
chr1_3 exon 42265974 42266186 42265974 ID=Msa0118980-mRNA-1:exon:12782;Parent=Msa0118980-mRNA-1
chr1_3 CDS 42267633 42267752 42267633 ID=Msa0118980-mRNA-1:cds;Parent=Msa0118980-mRNA-1
chr1_3 CDS 42267205 42267495 42267205 ID=Msa0118980-mRNA-1:cds;Parent=Msa0118980-mRNA-1
chr1_3 CDS 42266645 42266929 42266645 ID=Msa0118980-mRNA-1:cds;Parent=Msa0118980-mRNA-1
chr1_3 CDS 42266275 42266382 42266275 ID=Msa0118980-mRNA-1:cds;Parent=Msa0118980-mRNA-1
chr1_3 CDS 42265974 42266186 42265974 ID=Msa0118980-mRNA-1:cds;Parent=Msa0118980-mRNA-1
Gene Sequence

>Msa0118980

ATGAATCCAGCGGAGTTTTTGCTTGACCTTGCCAATGGAAACATTAATGATGTTTCCGTACCATCAGAGTTGAAGGATAAAGTGCATATTGGAAATGCAGAACCAGCAGTAGTCCATGAGTATCTGGTGGAGGCATGTGAATCTCGACTTGCACAAACAGAGAAGAAAAAAATAATTGGTTCCATGCCACAAGATGAAGCTTTAAAGACTAAAGTATGTTTGTCGCCTAAAAGACAATGGGGAGCAAGTTGGGATGAACAATTTTCCATACTTTTGTGTAGAGGAATCAAGGAAAGGAGGCACAACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACTGCAATCATCTTAGGATCCCTCTGGTGGCAATCAGATATTGAAAACCCAAAAGATCTGCAAGATCAGGCAGGACTACTTTTCATTATTACTGTGTTCTGGGGACTCATTCCAGTTTTTACAGCAATATTTACATTTCCTCAAGAGAGAGCCATGTTGAATAAGGAACGTGCGGCAGATATGTACAGATTAAGCACATACTTCCTTGCTAGAACAACGAGCGACCTTCCATTAGACCTGATATTATCAGTGCTTTTTCTACTTATTGTTTACTTCATGGCTGGTCTGAGACTAAGTGCTGCCTCCTTTTTTCTCACCGTTGTTACTGTTTTCCTCTGCATCATTGCAGCTCAGGGTCTTGGACTTGCTATCGGTGCTGTGCTTATGGACTCGAATAGAGCAACAACTTTCGCTTCAGTAACTGTGATGATCTTCATGCTGGCAGGAGGATTTTTTGTCCAAAAAGTCCCAATATTCATTTCTTGGATCCGCTACATGTCTTTCAACTACCACACTTACAAACTTTTGCTCAAGGTGCAATATGAACATCTCACACCTATCGTAAATGGAGTCAAAATTGACAGCGGTTTAACAGAAGTAGCTGCTCTAATTTCCATGGTTTTTGGTTACCGCTTCTTGGCATATCTTTCGTTGCGGAGAATGAAACTTCAATAA
Protein sequence

>Msa0118980

MNPAEFLLDLANGNINDVSVPSELKDKVHIGNAEPAVVHEYLVEACESRLAQTEKKKIIGSMPQDEALKTKVCLSPKRQWGASWDEQFSILLCRGIKERRHNYFSWLRITQVLSTAIILGSLWWQSDIENPKDLQDQAGLLFIITVFWGLIPVFTAIFTFPQERAMLNKERAADMYRLSTYFLARTTSDLPLDLILSVLFLLIVYFMAGLRLSAASFFLTVVTVFLCIIAAQGLGLAIGAVLMDSNRATTFASVTVMIFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPIVNGVKIDSGLTEVAALISMVFGYRFLAYLSLRRMKLQ*