AlfalfaGEDB | Msa0121680

M. sativa cultivar zhongmu-4 / Msa0121680

KEGG: -
GO: GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0121680	KEH42211.1	98.829	427	5	0	1	427	10	436	0.0	877

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0121680	sp\|Q9SF86\|PCRK1_ARATH	67.130	432	123	6	1	427	1	418	0.0	580

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0121680	A0A072VKQ3	98.829	427	5	0	1	427	10	436	0.0	877

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026000	Msa0121680	0.956118	6.254063e-114	-8.615850e-47
Msa0121680	Msa0166440	0.967024	1.037593e-126	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0121680	MtrunA17_Chr1g0180951	98.829	427	5	0	1	427	1	427	0.0	876
Msa0121680	MtrunA17_Chr7g0264461	79.767	430	79	6	1	426	9	434	0.0	696
Msa0121680	MtrunA17_Chr4g0031601	58.245	376	146	5	38	411	46	412	7.24e-154	443
Msa0121680	MtrunA17_Chr8g0336581	55.056	356	155	2	69	423	56	407	1.74e-138	403
Msa0121680	MtrunA17_Chr4g0055301	55.591	313	139	0	69	381	49	361	4.13e-128	375
Msa0121680	MtrunA17_Chr5g0399981	55.340	309	137	1	69	377	44	351	9.36e-124	362
Msa0121680	MtrunA17_Chr8g0362661	57.426	303	120	3	72	370	117	414	4.34e-117	350
Msa0121680	MtrunA17_Chr7g0216551	50.000	364	166	4	14	370	50	404	8.50e-117	349
Msa0121680	MtrunA17_Chr5g0416011	53.333	345	151	4	30	370	78	416	1.29e-116	349
Msa0121680	MtrunA17_Chr4g0064201	50.409	367	160	6	18	370	32	390	7.25e-113	338

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0121680	AT3G09830.2	67.130	432	123	6	1	427	1	418	0.0	580
Msa0121680	AT3G09830.3	67.130	432	123	6	1	427	1	418	0.0	580
Msa0121680	AT3G09830.1	67.130	432	123	6	1	427	1	418	0.0	580
Msa0121680	AT5G03320.2	65.197	431	135	7	1	427	1	420	0.0	554
Msa0121680	AT5G03320.1	65.197	431	135	7	1	427	1	420	0.0	554
Msa0121680	AT2G39110.1	74.593	307	77	1	72	377	73	379	3.63e-163	466
Msa0121680	AT2G39110.2	74.593	307	77	1	72	377	58	364	8.83e-163	465
Msa0121680	AT2G28940.2	52.110	474	166	14	1	426	1	461	1.42e-155	448
Msa0121680	AT2G28940.1	59.434	318	107	6	130	426	26	342	1.86e-131	382
Msa0121680	AT5G47070.1	53.030	330	149	3	68	396	65	389	1.78e-121	359

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Find 162 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGCAGCTATGTATGC+TGG	0.548655	1_3:-47741819	Msa0121680:three_prime_UTR
AAACTCCTCTCCCATGGAGT+AGG	0.574924	1_3:-47744018	Msa0121680:CDS
AAAGGGTGAGCAGCAGCTGT+TGG	0.530444	1_3:-47743080	Msa0121680:CDS
AAATAGCTTCACAAGCTGGA+AGG	0.609123	1_3:+47742347	None:intergenic
AAATGGATCAAAGCTATGAA+TGG	0.510830	1_3:-47742697	Msa0121680:three_prime_UTR
AACAGCTGCTGCTCACCCTT+TGG	0.268372	1_3:+47743082	None:intergenic
AACATACCTCCACGAGGAAA+TGG	0.425390	1_3:-47743960	Msa0121680:CDS
AACCAATTACAATCTGGTTT+TGG	0.277102	1_3:+47742770	None:intergenic
AACCAGATTGTAATTGGTTT+AGG	0.318885	1_3:-47742766	Msa0121680:CDS
AACCTAAACCAATTACAATC+TGG	0.412422	1_3:+47742764	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAGCTACTTATCCAAACA+TGG	+	chr1_3:47742600-47742619	None:intergenic	30.0%
TATTAGCATAATCACTTGTG+AGG	+	chr1_3:47742754-47742773	None:intergenic	30.0%
TCTTGTCTTAGTCAAGTATT+TGG	-	chr1_3:47742804-47742823	Msa0121680:CDS	30.0%
AAAGTCATCGAAAATCAACA+TGG	+	chr1_3:47742873-47742892	None:intergenic	30.0%
TTTCCATTCAACATCTACTA+CGG	-	chr1_3:47742960-47742979	Msa0121680:CDS	30.0%
CTATCAAACAACTCTACTTA+TGG	-	chr1_3:47743032-47743051	Msa0121680:CDS	30.0%
GAAATTGCAGTTAAACAACT+TGG	-	chr1_3:47743305-47743324	Msa0121680:intron	30.0%
GTTAAACAACTTGGTAAAAG+AGG	-	chr1_3:47743314-47743333	Msa0121680:intron	30.0%
GTCTAGTTATATGACTCTAT+TGG	-	chr1_3:47743459-47743478	Msa0121680:intron	30.0%
TTTGTGAATTCTCGATTAGA+GGG	-	chr1_3:47743594-47743613	Msa0121680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	47741712	47747065	47741712	ID=Msa0121680;Name=Msa0121680
chr1_3	mRNA	47741712	47747065	47741712	ID=Msa0121680-mRNA-1;Parent=Msa0121680;Name=Msa0121680-mRNA-1;_AED=0.13;_eAED=0.13;_QI=266\|1\|1\|1\|0.33\|0.28\|7\|945\|427
chr1_3	exon	47741712	47742489	47741712	ID=Msa0121680-mRNA-1:exon:14419;Parent=Msa0121680-mRNA-1
chr1_3	exon	47742566	47743239	47742566	ID=Msa0121680-mRNA-1:exon:14418;Parent=Msa0121680-mRNA-1
chr1_3	exon	47743663	47743785	47743663	ID=Msa0121680-mRNA-1:exon:14417;Parent=Msa0121680-mRNA-1
chr1_3	exon	47743952	47744212	47743952	ID=Msa0121680-mRNA-1:exon:14416;Parent=Msa0121680-mRNA-1
chr1_3	exon	47745434	47745847	47745434	ID=Msa0121680-mRNA-1:exon:14415;Parent=Msa0121680-mRNA-1
chr1_3	exon	47746654	47746784	47746654	ID=Msa0121680-mRNA-1:exon:14414;Parent=Msa0121680-mRNA-1
chr1_3	exon	47746952	47747065	47746952	ID=Msa0121680-mRNA-1:exon:14413;Parent=Msa0121680-mRNA-1
chr1_3	five_prime_UTR	47746952	47747065	47746952	ID=Msa0121680-mRNA-1:five_prime_utr;Parent=Msa0121680-mRNA-1
chr1_3	five_prime_UTR	47746654	47746784	47746654	ID=Msa0121680-mRNA-1:five_prime_utr;Parent=Msa0121680-mRNA-1
chr1_3	five_prime_UTR	47745827	47745847	47745827	ID=Msa0121680-mRNA-1:five_prime_utr;Parent=Msa0121680-mRNA-1
chr1_3	CDS	47745434	47745826	47745434	ID=Msa0121680-mRNA-1:cds;Parent=Msa0121680-mRNA-1
chr1_3	CDS	47743952	47744212	47743952	ID=Msa0121680-mRNA-1:cds;Parent=Msa0121680-mRNA-1
chr1_3	CDS	47743663	47743785	47743663	ID=Msa0121680-mRNA-1:cds;Parent=Msa0121680-mRNA-1
chr1_3	CDS	47742733	47743239	47742733	ID=Msa0121680-mRNA-1:cds;Parent=Msa0121680-mRNA-1
chr1_3	three_prime_UTR	47742566	47742732	47742566	ID=Msa0121680-mRNA-1:three_prime_utr;Parent=Msa0121680-mRNA-1
chr1_3	three_prime_UTR	47741712	47742489	47741712	ID=Msa0121680-mRNA-1:three_prime_utr;Parent=Msa0121680-mRNA-1

Gene Sequence

>Msa0121680

ATGAATTGTTTTCCATTCAACATCTACTACGGAGACAAGAAGGCTGATGCTAAAGGACTGCAAATGCAATCACTCTCGGGTCTATCAAACAACTCTACTTATGGCGGGAGTGATGTGAGAAGAACTGGTTCTGAATTGAATTCTCTGGATGCTTCCGACAACAGCTCCGACTCCCTTAGGAGGAATGCATTTCCCAATTTATCCCAAAGACCTAGCAACCTGAGAGTATTTACTGTATCTGAACTGAAATCAGCCACCAAAAATTTTGGTCGCTCTGTTATGCTTGGTGAGGGTGGATTCGGGTGTGTCTACAAGGGTTTGATCAAGAGTGTAGATGATCCTGCTAGGAAAATTGAAATTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGGGCATAAGGAATGGGTGACTGAAGTGAATGTTCTTGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTTGGCTATTGTGCCGATGATGATGAAAGAGGAATCCAACGGCTTTTAGTATATGAATATATGCCCAACAGAAGCTTGGAACACCATTTATCCCCGCGATCAGAAACTCCTCTCCCATGGAGTAGGAGACTGAAAATAGCCCAAGATGCTGCTCGCGGCTTAACATACCTCCACGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTTGGACTAGCAAGATTGGGACCATCTGATGGGTTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGGTATGCAGCTCCTGAATATATTCAAACAGGACGTCTCACTTCAAAGATTGATGTATGGAGCTACGGTGTCTTCCTCTATGAACTCATTACCGGCAGGCGTCCTTTAGATCGAAATCGCCCAAAGGGTGAGCAGCAGCTGTTGGAATGGATAAGACCATACCTTTCAGATGTGAAAAAGTTTCAAATAATTTTGGATCCTAGACTTGAGAGGAAACACCTCTTAAAGTCGGCCCAAAAACTTGCTATAGTAGCTAACAGATGCTTGGTTAGAAACCCAAAGAATCGCCCTAAGATGAGTGAAGTATTAGAAATGGTGGATCGGATTGTGGAGTCTTCGGTGAGTACTAATCAACAACCACCCTTGAATAGTGTAGCCTCAGCCGATGATTCTCAGGACACTGAAATAACTAACAAGAAGAGAATCATGGAGCCAAAACCAGATTGTAATTGGTTTAGGTTGTGGAGACCAAAGCTTTTAAGAACATGCTGA

Protein sequence

>Msa0121680

MNCFPFNIYYGDKKADAKGLQMQSLSGLSNNSTYGGSDVRRTGSELNSLDASDNSSDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSVDDPARKIEIAVKQLGKRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLVYEYMPNRSLEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKIDVWSYGVFLYELITGRRPLDRNRPKGEQQLLEWIRPYLSDVKKFQIILDPRLERKHLLKSAQKLAIVANRCLVRNPKNRPKMSEVLEMVDRIVESSVSTNQQPPLNSVASADDSQDTEITNKKRIMEPKPDCNWFRLWRPKLLRTC*