AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122100 MtrunA17_Chr1g0182651 98.805 502 6 0 26 527 1 502 0.0 1028
Msa0122100 MtrunA17_Chr1g0182671 77.907 516 82 8 37 527 1 509 0.0 788
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122100 AT2G37570.1 75.794 504 99 11 37 527 1 494 0.0 741
Msa0122100 AT5G02480.1 64.591 514 144 15 26 512 1 503 0.0 636
Msa0122100 AT3G12570.3 65.594 497 150 11 26 513 1 485 0.0 631
Msa0122100 AT3G12570.2 65.594 497 150 11 26 513 1 485 0.0 631
Msa0122100 AT3G12570.1 65.594 497 150 11 26 513 1 485 0.0 631
Msa0122100 AT3G12570.4 65.594 497 150 11 26 513 1 485 0.0 631
Msa0122100 AT2G37570.2 77.933 358 67 5 175 527 1 351 0.0 550

Find 138 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATCCTTGTGATATTT+TGG 0.133966 1_3:-48449671 Msa0122100:CDS
ATTCTTCATCATTCCCATTA+AGG 0.195571 1_3:+48448900 None:intergenic
ATCTGATCGGATTCCGGATT+TGG 0.201855 1_3:-48448855 Msa0122100:CDS
GATGACAGCAATGGTGTTTC+GGG 0.210690 1_3:-48449478 Msa0122100:CDS
TAAATAAATAATTTAATTGT+TGG 0.270398 1_3:+48450402 None:intergenic
GAGCATTTCTTCACCGCTTT+CGG 0.286327 1_3:+48449595 None:intergenic
AAGAAGCTCCTCAATGAATC+TGG 0.311143 1_3:-48449004 Msa0122100:CDS
CGAGGCGTGTTGATAGCATT+TGG 0.312491 1_3:-48449573 Msa0122100:CDS
CGATATCAATTTACCCCTTT+CGG 0.323332 1_3:-48449710 Msa0122100:CDS
AGCTTCTTTGAGTGAGGAAT+TGG 0.323904 1_3:+48449019 None:intergenic
GGATGACAGCAATGGTGTTT+CGG 0.325073 1_3:-48449479 Msa0122100:CDS
GAGGCGTGTTGATAGCATTT+GGG 0.329733 1_3:-48449572 Msa0122100:CDS
TCCTCCATCTGATCGGATTC+CGG 0.340719 1_3:-48448861 Msa0122100:CDS
GCTTCAATATTGGCATCTTC+AGG 0.342424 1_3:+48448506 None:intergenic
TCCTCAGAGCACTGCCCTCC+TGG 0.349557 1_3:-48448566 Msa0122100:CDS
GGAATTGGAGCACTCTTGAT+TGG 0.366866 1_3:+48449034 None:intergenic
GAGAGGCCGGAGAATGCTTT+GGG 0.374341 1_3:-48449376 Msa0122100:CDS
CGAAAGGGGTAAATTGATAT+CGG 0.383055 1_3:+48449711 None:intergenic
GTCTGCCTTCGTCCTAATCT+TGG 0.385991 1_3:-48448404 Msa0122100:CDS
CAAAATAATGAATAGTGAAA+TGG 0.386838 1_3:+48450431 None:intergenic
GGAGAGGCCGGAGAATGCTT+TGG 0.404473 1_3:-48449377 Msa0122100:CDS
CCGAAGTCGCTTGCTTCGGC+CGG 0.412685 1_3:+48449109 None:intergenic
TTCCTAGTGTCAAAGTTACT+TGG 0.423216 1_3:-48448691 Msa0122100:CDS
CTAATCTTTCAAGTCTTGAC+AGG 0.426639 1_3:-48449186 Msa0122100:CDS
AGTCGAAGGCTAAAGTTACT+AGG 0.430161 1_3:-48449501 Msa0122100:CDS
TCTCACTTGTTGTCTCTCAA+TGG 0.432740 1_3:-48449839 Msa0122100:CDS
AGGATCAGTGCTTGAGATCA+TGG 0.440557 1_3:-48448468 Msa0122100:CDS
ATCATAGTAAGCTTCAATAT+TGG 0.441176 1_3:+48448496 None:intergenic
CTAGGGTGCATTTCCAAATC+CGG 0.444005 1_3:+48448842 None:intergenic
CCCTTTCGGTGCCGCAGCCG+TGG 0.445719 1_3:-48449696 Msa0122100:CDS
TCAGATCCAGGACGAAGTTT+AGG 0.445753 1_3:+48448443 None:intergenic
GGATGCAAAGGAAGCAGTAC+AGG 0.445854 1_3:-48449258 Msa0122100:CDS
TCTCACTCATGGTATCATAA+AGG 0.449857 1_3:-48448660 Msa0122100:CDS
TTGATAGCATTTGGGGTGCT+TGG 0.452574 1_3:-48449564 Msa0122100:CDS
TGTTTCGGGGTTTGATAAAA+CGG 0.459919 1_3:-48449464 Msa0122100:CDS
CCACGGCTGCGGCACCGAAA+GGG 0.460746 1_3:+48449696 None:intergenic
CTGTCAAGACTTGAAAGATT+AGG 0.468404 1_3:+48449187 None:intergenic
TGAGCCGAAGTCGCTTGCTT+CGG 0.472282 1_3:+48449105 None:intergenic
TCAAGCTCAAAATCTGTGTT+CGG 0.478027 1_3:+48449070 None:intergenic
AATATTGAAGCTTACTATGA+TGG 0.483238 1_3:-48448494 Msa0122100:CDS
AGATTTGAATTTCATAATCC+CGG 0.485916 1_3:-48449128 Msa0122100:CDS
CCGGCCGAAGCAAGCGACTT+CGG 0.486024 1_3:-48449109 Msa0122100:CDS
TCCTAATCTTGGTGGCAACC+TGG 0.487040 1_3:-48448393 Msa0122100:CDS
TCCAGGTTGCCACCAAGATT+AGG 0.488112 1_3:+48448392 None:intergenic
AAGCAAGCGACTTCGGCTCA+TGG 0.488234 1_3:-48449102 Msa0122100:CDS
CATATGAAGAGGTAATTCAA+TGG 0.488793 1_3:-48449872 Msa0122100:intron
GCACTCTTGATTGGAGGAGG+TGG 0.489975 1_3:+48449043 None:intergenic
CCCCTATCAGTAGCAAGAAA+AGG 0.490878 1_3:-48448934 Msa0122100:CDS
CGAAGTCGCTTGCTTCGGCC+GGG 0.491525 1_3:+48449110 None:intergenic
TTCAACCAGTGTTGTTCACT+AGG 0.493147 1_3:+48448824 None:intergenic
ATGATCTCAAGCACTGATCC+TGG 0.497389 1_3:+48448470 None:intergenic
ATGATGATGAAGCGCATAAT+CGG 0.503124 1_3:-48450306 Msa0122100:CDS
GGATTATGAAATTCAAATCT+CGG 0.507468 1_3:+48449131 None:intergenic
TCCACGGCTGCGGCACCGAA+AGG 0.508880 1_3:+48449695 None:intergenic
AATTTATCAAGAGAAATGAT+AGG 0.515148 1_3:-48448610 Msa0122100:CDS
TGCCTTCGTCCTAATCTTGG+TGG 0.517512 1_3:-48448401 Msa0122100:CDS
CTGTTAATCCTCCATCTGAT+CGG 0.518035 1_3:-48448868 Msa0122100:CDS
CTAGTGTCAAAGTTACTTGG+AGG 0.520079 1_3:-48448688 Msa0122100:CDS
AGATTTAGAGATGAATAGAC+AGG 0.522611 1_3:-48449752 Msa0122100:CDS
GATGTTGGTCTTGGTACTCA+AGG 0.523677 1_3:-48449649 Msa0122100:CDS
TCCATTGACAAAAGTGTTGA+AGG 0.524772 1_3:+48449802 None:intergenic
ACTTCATGCTCTTCAGATCC+AGG 0.524848 1_3:+48448431 None:intergenic
ATATGAAGAGGTAATTCAAT+GGG 0.526066 1_3:-48449871 Msa0122100:intron
ATGGTGCCTAAACTTCGTCC+TGG 0.529802 1_3:-48448449 Msa0122100:CDS
GAAAGGGGTAAATTGATATC+GGG 0.534951 1_3:+48449712 None:intergenic
AGAAGCTCCTCAATGAATCT+GGG 0.536327 1_3:-48449003 Msa0122100:CDS
GTTTCCTTTCAGTGTTGACA+AGG 0.536419 1_3:-48449299 Msa0122100:CDS
ATTTCGCGAACAAATTCTCC+AGG 0.539440 1_3:+48448548 None:intergenic
CTCCAAGTAACTTTGACACT+AGG 0.539756 1_3:+48448689 None:intergenic
ATTGGAGCACTCTTGATTGG+AGG 0.540765 1_3:+48449037 None:intergenic
TTGTCAACACTGAAAGGAAA+CGG 0.540825 1_3:+48449301 None:intergenic
ACAGGGATGAGCAGAAGAAG+TGG 0.546941 1_3:-48449168 Msa0122100:CDS
GTCGAAGGCTAAAGTTACTA+GGG 0.549025 1_3:-48449500 Msa0122100:CDS
CACGGCTGCGGCACCGAAAG+GGG 0.553443 1_3:+48449697 None:intergenic
GGAGCACTCTTGATTGGAGG+AGG 0.554830 1_3:+48449040 None:intergenic
TTGAGGAGCTTCTTTGAGTG+AGG 0.556306 1_3:+48449013 None:intergenic
AATCTTGGTGGCAACCTGGA+TGG 0.556381 1_3:-48448389 Msa0122100:CDS
ATCTTCCCCAAAGCATTCTC+CGG 0.557166 1_3:+48449370 None:intergenic
TCAGGAATACGAGTTAAAAG+AGG 0.557588 1_3:+48448524 None:intergenic
ACATGAGATCATTACCATCC+AGG 0.560171 1_3:+48448375 None:intergenic
ACACTAGGAAGATCCACAAA+AGG 0.561453 1_3:+48448704 None:intergenic
GGAGGGCAGTGCTCTGAGGA+TGG 0.561491 1_3:+48448569 None:intergenic
TTCGATCTCATAGGATGCAA+AGG 0.561754 1_3:-48449270 Msa0122100:CDS
AAATCCGGAATCCGATCAGA+TGG 0.563017 1_3:+48448857 None:intergenic
GGATCAGAATTCCACGGCTG+CGG 0.563668 1_3:+48449685 None:intergenic
AAACCCTTGTCAACACTGAA+AGG 0.565278 1_3:+48449295 None:intergenic
CAGGAATACGAGTTAAAAGA+GGG 0.571303 1_3:+48448525 None:intergenic
TTTGCTTAACCTTCCGAAAG+CGG 0.572823 1_3:-48449608 Msa0122100:CDS
ATTTCTTCACCGCTTTCGGA+AGG 0.577148 1_3:+48449599 None:intergenic
CGCGAACAAATTCTCCAGGA+GGG 0.578586 1_3:+48448552 None:intergenic
TCAACCAGTGTTGTTCACTA+GGG 0.580882 1_3:+48448825 None:intergenic
AAGGAAACGGACGTTCCCCT+TGG 0.581022 1_3:+48449314 None:intergenic
AATTCAGCCCAGATTCATTG+AGG 0.581944 1_3:+48448996 None:intergenic
GAATGATGAAGAATGTTACT+TGG 0.584179 1_3:-48448891 Msa0122100:CDS
AGGCGTGTTGATAGCATTTG+GGG 0.585611 1_3:-48449571 Msa0122100:CDS
TCAAATCCTCAGTGTCTGCA+TGG 0.586490 1_3:-48449229 Msa0122100:CDS
ACAATTTATGAGGATGAGCA+AGG 0.589192 1_3:-48448749 Msa0122100:CDS
TGGAGGAATACTCTCACTCA+TGG 0.595793 1_3:-48448671 Msa0122100:CDS
TGAACGGACATTCTCGCCAA+GGG 0.598697 1_3:-48449330 Msa0122100:CDS
TCATATGCCTAACGGTGATG+CGG 0.608788 1_3:-48448966 Msa0122100:CDS
GATTAGGACGAAGGCAGACA+CGG 0.610183 1_3:+48448408 None:intergenic
TTGTCTACTCATATGCCTAA+CGG 0.610882 1_3:-48448974 Msa0122100:CDS
AAGTCAGCCGCATCACCGTT+AGG 0.613743 1_3:+48448959 None:intergenic
GATGCAAAGGAAGCAGTACA+GGG 0.614610 1_3:-48449257 Msa0122100:CDS
AAGAAGTGGATGGAACTCAC+TGG 0.615287 1_3:-48449154 Msa0122100:CDS
CTTTGGGGAAGATGCAGCTG+AGG 0.615425 1_3:-48449360 Msa0122100:CDS
GATGAAGAATGTCTGTGGAC+CGG 0.615475 1_3:-48448786 Msa0122100:CDS
GGATGAGCAGAAGAAGTGGA+TGG 0.618142 1_3:-48449164 Msa0122100:CDS
TTTCCTTTCAGTGTTGACAA+GGG 0.621299 1_3:-48449298 Msa0122100:CDS
CCATTGACAAAAGTGTTGAA+GGG 0.623640 1_3:+48449803 None:intergenic
TCCAGGAGGGCAGTGCTCTG+AGG 0.623691 1_3:+48448565 None:intergenic
ATTTGGAAAACATGTACATG+TGG 0.624344 1_3:-48449408 Msa0122100:CDS
ATGACAGCAATGGTGTTTCG+GGG 0.628591 1_3:-48449477 Msa0122100:CDS
GAAGCTTACTATGATGGACC+AGG 0.634791 1_3:-48448488 Msa0122100:CDS
ATGAACGGACATTCTCGCCA+AGG 0.639384 1_3:-48449331 Msa0122100:CDS
GTTGGTCTTGGTACTCAAGG+TGG 0.640587 1_3:-48449646 Msa0122100:CDS
TATCAGTAGCAAGAAAAGGA+AGG 0.643198 1_3:-48448930 Msa0122100:CDS
TGCCACCAAGATTAGGACGA+AGG 0.643544 1_3:+48448399 None:intergenic
TGAAGAGGTAATTCAATGGG+TGG 0.644069 1_3:-48449868 Msa0122100:intron
TAATCTTTCAAGTCTTGACA+GGG 0.648340 1_3:-48449185 Msa0122100:CDS
AGTGTTGCTTGAAAAGTCGA+AGG 0.649833 1_3:-48449515 Msa0122100:CDS
TCCGGAATCCGATCAGATGG+AGG 0.649849 1_3:+48448860 None:intergenic
GTTACTAGGGATGACAGCAA+TGG 0.662440 1_3:-48449487 Msa0122100:CDS
TCACAAGGATCAGAATTCCA+CGG 0.663000 1_3:+48449679 None:intergenic
CCAACATCCAAAATATCACA+AGG 0.665335 1_3:+48449664 None:intergenic
TGCACCCTAGTGAACAACAC+TGG 0.665394 1_3:-48448829 Msa0122100:CDS
AGGGGTAAATTGATATCGGG+CGG 0.670799 1_3:+48449715 None:intergenic
TCGCGAACAAATTCTCCAGG+AGG 0.671962 1_3:+48448551 None:intergenic
AGAGGCCGGAGAATGCTTTG+GGG 0.673562 1_3:-48449375 Msa0122100:CDS
GAACGGACATTCTCGCCAAG+GGG 0.681600 1_3:-48449329 Msa0122100:CDS
CAAGCGACTTCGGCTCATGG+AGG 0.693168 1_3:-48449099 Msa0122100:CDS
TTTGGAAAACATGTACATGT+GGG 0.696963 1_3:-48449407 Msa0122100:CDS
AAGCGGTGAAGAAATGCTCG+AGG 0.699893 1_3:-48449591 Msa0122100:CDS
CAGCTGAGGAGTTACATGAA+CGG 0.706577 1_3:-48449346 Msa0122100:CDS
ATGCAAAGGAAGCAGTACAG+GGG 0.725658 1_3:-48449256 Msa0122100:CDS
TCAATACCATGCAGACACTG+AGG 0.729936 1_3:+48449223 None:intergenic
TTGACAAAAGTGTTGAAGGG+TGG 0.732305 1_3:+48449806 None:intergenic
GGGGTGATGAAGAATGTCTG+TGG 0.757818 1_3:-48448791 Msa0122100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTATTTTAATTGA+TGG - chr1_3:48448820-48448839 Msa0122100:CDS 10.0%
!!! GTTTTTTTATTTTAATTGAT+GGG - chr1_3:48448821-48448840 Msa0122100:CDS 10.0%
!!! TTTTTTTATTTTAATTGATG+GGG - chr1_3:48448822-48448841 Msa0122100:CDS 10.0%
!!! TGTTTTTTTATTTTAATTGA+TGG - chr1_3:48448820-48448839 Msa0122100:CDS 10.0%
!!! GTTTTTTTATTTTAATTGAT+GGG - chr1_3:48448821-48448840 Msa0122100:CDS 10.0%
!!! TTTTTTTATTTTAATTGATG+GGG - chr1_3:48448822-48448841 Msa0122100:CDS 10.0%
!! TAAAAAAAAATGAAAAGTCT+AGG - chr1_3:48448492-48448511 Msa0122100:CDS 15.0%
!! AAAAAAAAATGAAAAGTCTA+GGG - chr1_3:48448493-48448512 Msa0122100:CDS 15.0%
!! TTATTGTTAATGTTAATGTT+TGG - chr1_3:48448848-48448867 Msa0122100:CDS 15.0%
!! TATTGTTAATGTTAATGTTT+GGG - chr1_3:48448849-48448868 Msa0122100:CDS 15.0%
!!! TTATTTTGTTGAATTGTTTT+TGG - chr1_3:48448904-48448923 Msa0122100:CDS 15.0%
!!! TATTTTGTTGAATTGTTTTT+GGG - chr1_3:48448905-48448924 Msa0122100:CDS 15.0%
!! TAAAAAAAAATGAAAAGTCT+AGG - chr1_3:48448492-48448511 Msa0122100:CDS 15.0%
!! AAAAAAAAATGAAAAGTCTA+GGG - chr1_3:48448493-48448512 Msa0122100:CDS 15.0%
!! TTATTGTTAATGTTAATGTT+TGG - chr1_3:48448848-48448867 Msa0122100:CDS 15.0%
!! TATTGTTAATGTTAATGTTT+GGG - chr1_3:48448849-48448868 Msa0122100:CDS 15.0%
!!! TTATTTTGTTGAATTGTTTT+TGG - chr1_3:48448904-48448923 Msa0122100:CDS 15.0%
!!! TATTTTGTTGAATTGTTTTT+GGG - chr1_3:48448905-48448924 Msa0122100:CDS 15.0%
!! AAAAAAAAGAGATAGAATAG+GGG + chr1_3:48448402-48448421 None:intergenic 20.0%
!! GAAAAAAAAGAGATAGAATA+GGG + chr1_3:48448403-48448422 None:intergenic 20.0%
!! CAAAATAATGAATAGTGAAA+TGG + chr1_3:48448425-48448444 None:intergenic 20.0%
!! CACTAATCTTAATTTATGAT+TGG + chr1_3:48448661-48448680 None:intergenic 20.0%
!!! TCTGAATAATGATGTTTTTA+TGG - chr1_3:48449413-48449432 Msa0122100:CDS 20.0%
!! AATTTATCAAGAGAAATGAT+AGG - chr1_3:48450243-48450262 Msa0122100:intron 20.0%
!! AAAAAAAAGAGATAGAATAG+GGG + chr1_3:48448402-48448421 None:intergenic 20.0%
!! GAAAAAAAAGAGATAGAATA+GGG + chr1_3:48448403-48448422 None:intergenic 20.0%
!! CAAAATAATGAATAGTGAAA+TGG + chr1_3:48448425-48448444 None:intergenic 20.0%
!! CACTAATCTTAATTTATGAT+TGG + chr1_3:48448661-48448680 None:intergenic 20.0%
!!! TCTGAATAATGATGTTTTTA+TGG - chr1_3:48449413-48449432 Msa0122100:CDS 20.0%
!! AATTTATCAAGAGAAATGAT+AGG - chr1_3:48450243-48450262 Msa0122100:intron 20.0%
! GGAAAAAAAAGAGATAGAAT+AGG + chr1_3:48448404-48448423 None:intergenic 25.0%
! TGAGAAAAAGAATCGAAAAA+TGG + chr1_3:48448589-48448608 None:intergenic 25.0%
!! TTTTCGATTCTTTTTCTCAA+AGG - chr1_3:48448590-48448609 Msa0122100:CDS 25.0%
! GAGATTCAGAGAAAAAAAAA+TGG + chr1_3:48448633-48448652 None:intergenic 25.0%
! TTGATTCAAATCAACAATTC+AGG - chr1_3:48448698-48448717 Msa0122100:CDS 25.0%
!! ATTAGTTGATTCACAAATCT+AGG - chr1_3:48448794-48448813 Msa0122100:CDS 25.0%
!! TTAGTTGATTCACAAATCTA+GGG - chr1_3:48448795-48448814 Msa0122100:CDS 25.0%
!!! GGTATTGATTTAAATGTTGA+CGG - chr1_3:48448870-48448889 Msa0122100:CDS 25.0%
! ATATAGAAAACCATATGAAG+AGG - chr1_3:48448970-48448989 Msa0122100:CDS 25.0%
! ATATGAAGAGGTAATTCAAT+GGG - chr1_3:48448982-48449001 Msa0122100:CDS 25.0%
! GGATTATGAAATTCAAATCT+CGG + chr1_3:48449725-48449744 None:intergenic 25.0%
! AGATTTGAATTTCATAATCC+CGG - chr1_3:48449725-48449744 Msa0122100:CDS 25.0%
! ATCATAGTAAGCTTCAATAT+TGG + chr1_3:48450360-48450379 None:intergenic 25.0%
! AATATTGAAGCTTACTATGA+TGG - chr1_3:48450359-48450378 Msa0122100:five_prime_UTR 25.0%
! GGAAAAAAAAGAGATAGAAT+AGG + chr1_3:48448404-48448423 None:intergenic 25.0%
! TGAGAAAAAGAATCGAAAAA+TGG + chr1_3:48448589-48448608 None:intergenic 25.0%
!! TTTTCGATTCTTTTTCTCAA+AGG - chr1_3:48448590-48448609 Msa0122100:CDS 25.0%
! GAGATTCAGAGAAAAAAAAA+TGG + chr1_3:48448633-48448652 None:intergenic 25.0%
! TTGATTCAAATCAACAATTC+AGG - chr1_3:48448698-48448717 Msa0122100:CDS 25.0%
!! ATTAGTTGATTCACAAATCT+AGG - chr1_3:48448794-48448813 Msa0122100:CDS 25.0%
!! TTAGTTGATTCACAAATCTA+GGG - chr1_3:48448795-48448814 Msa0122100:CDS 25.0%
!!! GGTATTGATTTAAATGTTGA+CGG - chr1_3:48448870-48448889 Msa0122100:CDS 25.0%
! ATATAGAAAACCATATGAAG+AGG - chr1_3:48448970-48448989 Msa0122100:CDS 25.0%
! ATATGAAGAGGTAATTCAAT+GGG - chr1_3:48448982-48449001 Msa0122100:CDS 25.0%
! GGATTATGAAATTCAAATCT+CGG + chr1_3:48449725-48449744 None:intergenic 25.0%
! AGATTTGAATTTCATAATCC+CGG - chr1_3:48449725-48449744 Msa0122100:CDS 25.0%
! ATCATAGTAAGCTTCAATAT+TGG + chr1_3:48450360-48450379 None:intergenic 25.0%
! AATATTGAAGCTTACTATGA+TGG - chr1_3:48450359-48450378 Msa0122100:five_prime_UTR 25.0%
TTTGTTTGATGTGTGAAGAA+TGG - chr1_3:48448760-48448779 Msa0122100:CDS 30.0%
AAATGTTGACGGTGTTTATA+AGG - chr1_3:48448881-48448900 Msa0122100:CDS 30.0%
!!! TTGTTGAATTGTTTTTGGGA+TGG - chr1_3:48448909-48448928 Msa0122100:CDS 30.0%
CATTGAATTACCTCTTCATA+TGG + chr1_3:48448983-48449002 None:intergenic 30.0%
CATATGAAGAGGTAATTCAA+TGG - chr1_3:48448981-48449000 Msa0122100:CDS 30.0%
AGATTTAGAGATGAATAGAC+AGG - chr1_3:48449101-48449120 Msa0122100:CDS 30.0%
! TTCTGATCCTTGTGATATTT+TGG - chr1_3:48449182-48449201 Msa0122100:CDS 30.0%
! TTTTATGGTTCAGCATGATT+TGG - chr1_3:48449428-48449447 Msa0122100:CDS 30.0%
ATTTGGAAAACATGTACATG+TGG - chr1_3:48449445-48449464 Msa0122100:CDS 30.0%
TTTGGAAAACATGTACATGT+GGG - chr1_3:48449446-48449465 Msa0122100:CDS 30.0%
! TAATCTTTCAAGTCTTGACA+GGG - chr1_3:48449668-48449687 Msa0122100:CDS 30.0%
ATTCTTCATCATTCCCATTA+AGG + chr1_3:48449956-48449975 None:intergenic 30.0%
GAATGATGAAGAATGTTACT+TGG - chr1_3:48449962-48449981 Msa0122100:intron 30.0%
AGCTGCAAAAACAATTTATG+AGG - chr1_3:48450094-48450113 Msa0122100:intron 30.0%
TTTGTTTGATGTGTGAAGAA+TGG - chr1_3:48448760-48448779 Msa0122100:CDS 30.0%
AAATGTTGACGGTGTTTATA+AGG - chr1_3:48448881-48448900 Msa0122100:CDS 30.0%
!!! TTGTTGAATTGTTTTTGGGA+TGG - chr1_3:48448909-48448928 Msa0122100:CDS 30.0%
CATTGAATTACCTCTTCATA+TGG + chr1_3:48448983-48449002 None:intergenic 30.0%
CATATGAAGAGGTAATTCAA+TGG - chr1_3:48448981-48449000 Msa0122100:CDS 30.0%
AGATTTAGAGATGAATAGAC+AGG - chr1_3:48449101-48449120 Msa0122100:CDS 30.0%
! TTCTGATCCTTGTGATATTT+TGG - chr1_3:48449182-48449201 Msa0122100:CDS 30.0%
! TTTTATGGTTCAGCATGATT+TGG - chr1_3:48449428-48449447 Msa0122100:CDS 30.0%
ATTTGGAAAACATGTACATG+TGG - chr1_3:48449445-48449464 Msa0122100:CDS 30.0%
TTTGGAAAACATGTACATGT+GGG - chr1_3:48449446-48449465 Msa0122100:CDS 30.0%
! TAATCTTTCAAGTCTTGACA+GGG - chr1_3:48449668-48449687 Msa0122100:CDS 30.0%
ATTCTTCATCATTCCCATTA+AGG + chr1_3:48449956-48449975 None:intergenic 30.0%
GAATGATGAAGAATGTTACT+TGG - chr1_3:48449962-48449981 Msa0122100:intron 30.0%
AGCTGCAAAAACAATTTATG+AGG - chr1_3:48450094-48450113 Msa0122100:intron 30.0%
! ATGATGATGAAGCGCATAAT+CGG - chr1_3:48448547-48448566 Msa0122100:CDS 35.0%
TCAAATCAACAATTCAGGCT+AGG - chr1_3:48448703-48448722 Msa0122100:CDS 35.0%
!! CCATTGACAAAAGTGTTGAA+GGG + chr1_3:48449053-48449072 None:intergenic 35.0%
!! TCCATTGACAAAAGTGTTGA+AGG + chr1_3:48449054-48449073 None:intergenic 35.0%
GAAAGGGGTAAATTGATATC+GGG + chr1_3:48449144-48449163 None:intergenic 35.0%
CGAAAGGGGTAAATTGATAT+CGG + chr1_3:48449145-48449164 None:intergenic 35.0%
CGATATCAATTTACCCCTTT+CGG - chr1_3:48449143-48449162 Msa0122100:CDS 35.0%
CCAACATCCAAAATATCACA+AGG + chr1_3:48449192-48449211 None:intergenic 35.0%
!! CCTTGTGATATTTTGGATGT+TGG - chr1_3:48449189-48449208 Msa0122100:CDS 35.0%
!! GATATTTTGGATGTTGGTCT+TGG - chr1_3:48449195-48449214 Msa0122100:CDS 35.0%
TGTTTCGGGGTTTGATAAAA+CGG - chr1_3:48449389-48449408 Msa0122100:CDS 35.0%
TTGTCAACACTGAAAGGAAA+CGG + chr1_3:48449555-48449574 None:intergenic 35.0%
!! TTTCCTTTCAGTGTTGACAA+GGG - chr1_3:48449555-48449574 Msa0122100:CDS 35.0%
CTGTCAAGACTTGAAAGATT+AGG + chr1_3:48449669-48449688 None:intergenic 35.0%
! CTAATCTTTCAAGTCTTGAC+AGG - chr1_3:48449667-48449686 Msa0122100:CDS 35.0%
TCAAGCTCAAAATCTGTGTT+CGG + chr1_3:48449786-48449805 None:intergenic 35.0%
TTGTCTACTCATATGCCTAA+CGG - chr1_3:48449879-48449898 Msa0122100:intron 35.0%
! TCCTTTTCTTGCTACTGATA+GGG + chr1_3:48449923-48449942 None:intergenic 35.0%
! TTCCTTTTCTTGCTACTGAT+AGG + chr1_3:48449924-48449943 None:intergenic 35.0%
TATCAGTAGCAAGAAAAGGA+AGG - chr1_3:48449923-48449942 Msa0122100:intron 35.0%
!! AGGAAGGACTTTTTCCTTAA+TGG - chr1_3:48449939-48449958 Msa0122100:intron 35.0%
!! GGAAGGACTTTTTCCTTAAT+GGG - chr1_3:48449940-48449959 Msa0122100:intron 35.0%
!! CACTGGTTGAATGATTTTAG+CGG - chr1_3:48450041-48450060 Msa0122100:intron 35.0%
!! ACTGGTTGAATGATTTTAGC+GGG - chr1_3:48450042-48450061 Msa0122100:intron 35.0%
ACAATTTATGAGGATGAGCA+AGG - chr1_3:48450104-48450123 Msa0122100:intron 35.0%
! CATTATCAGTTTGCCTTTTG+TGG - chr1_3:48450136-48450155 Msa0122100:intron 35.0%
TTCCTAGTGTCAAAGTTACT+TGG - chr1_3:48450162-48450181 Msa0122100:intron 35.0%
TCTCACTCATGGTATCATAA+AGG - chr1_3:48450193-48450212 Msa0122100:intron 35.0%
CAGGAATACGAGTTAAAAGA+GGG + chr1_3:48450331-48450350 None:intergenic 35.0%
TCAGGAATACGAGTTAAAAG+AGG + chr1_3:48450332-48450351 None:intergenic 35.0%
! ATGATGATGAAGCGCATAAT+CGG - chr1_3:48448547-48448566 Msa0122100:CDS 35.0%
TCAAATCAACAATTCAGGCT+AGG - chr1_3:48448703-48448722 Msa0122100:CDS 35.0%
!! CCATTGACAAAAGTGTTGAA+GGG + chr1_3:48449053-48449072 None:intergenic 35.0%
!! TCCATTGACAAAAGTGTTGA+AGG + chr1_3:48449054-48449073 None:intergenic 35.0%
GAAAGGGGTAAATTGATATC+GGG + chr1_3:48449144-48449163 None:intergenic 35.0%
CGAAAGGGGTAAATTGATAT+CGG + chr1_3:48449145-48449164 None:intergenic 35.0%
CGATATCAATTTACCCCTTT+CGG - chr1_3:48449143-48449162 Msa0122100:CDS 35.0%
CCAACATCCAAAATATCACA+AGG + chr1_3:48449192-48449211 None:intergenic 35.0%
!! CCTTGTGATATTTTGGATGT+TGG - chr1_3:48449189-48449208 Msa0122100:CDS 35.0%
!! GATATTTTGGATGTTGGTCT+TGG - chr1_3:48449195-48449214 Msa0122100:CDS 35.0%
TGTTTCGGGGTTTGATAAAA+CGG - chr1_3:48449389-48449408 Msa0122100:CDS 35.0%
TTGTCAACACTGAAAGGAAA+CGG + chr1_3:48449555-48449574 None:intergenic 35.0%
!! TTTCCTTTCAGTGTTGACAA+GGG - chr1_3:48449555-48449574 Msa0122100:CDS 35.0%
CTGTCAAGACTTGAAAGATT+AGG + chr1_3:48449669-48449688 None:intergenic 35.0%
! CTAATCTTTCAAGTCTTGAC+AGG - chr1_3:48449667-48449686 Msa0122100:CDS 35.0%
TCAAGCTCAAAATCTGTGTT+CGG + chr1_3:48449786-48449805 None:intergenic 35.0%
TTGTCTACTCATATGCCTAA+CGG - chr1_3:48449879-48449898 Msa0122100:intron 35.0%
! TCCTTTTCTTGCTACTGATA+GGG + chr1_3:48449923-48449942 None:intergenic 35.0%
! TTCCTTTTCTTGCTACTGAT+AGG + chr1_3:48449924-48449943 None:intergenic 35.0%
TATCAGTAGCAAGAAAAGGA+AGG - chr1_3:48449923-48449942 Msa0122100:intron 35.0%
!! AGGAAGGACTTTTTCCTTAA+TGG - chr1_3:48449939-48449958 Msa0122100:intron 35.0%
!! GGAAGGACTTTTTCCTTAAT+GGG - chr1_3:48449940-48449959 Msa0122100:intron 35.0%
!! CACTGGTTGAATGATTTTAG+CGG - chr1_3:48450041-48450060 Msa0122100:intron 35.0%
!! ACTGGTTGAATGATTTTAGC+GGG - chr1_3:48450042-48450061 Msa0122100:intron 35.0%
ACAATTTATGAGGATGAGCA+AGG - chr1_3:48450104-48450123 Msa0122100:intron 35.0%
! CATTATCAGTTTGCCTTTTG+TGG - chr1_3:48450136-48450155 Msa0122100:intron 35.0%
TTCCTAGTGTCAAAGTTACT+TGG - chr1_3:48450162-48450181 Msa0122100:intron 35.0%
TCTCACTCATGGTATCATAA+AGG - chr1_3:48450193-48450212 Msa0122100:intron 35.0%
CAGGAATACGAGTTAAAAGA+GGG + chr1_3:48450331-48450350 None:intergenic 35.0%
TCAGGAATACGAGTTAAAAG+AGG + chr1_3:48450332-48450351 None:intergenic 35.0%
TGAAGAGGTAATTCAATGGG+TGG - chr1_3:48448985-48449004 Msa0122100:CDS 40.0%
!! TCTCACTTGTTGTCTCTCAA+TGG - chr1_3:48449014-48449033 Msa0122100:CDS 40.0%
!! TTGACAAAAGTGTTGAAGGG+TGG + chr1_3:48449050-48449069 None:intergenic 40.0%
! CCCTTCAACACTTTTGTCAA+TGG - chr1_3:48449050-48449069 Msa0122100:CDS 40.0%
!! CTTTTGTCAATGGACTCAAG+TGG - chr1_3:48449060-48449079 Msa0122100:CDS 40.0%
TCACAAGGATCAGAATTCCA+CGG + chr1_3:48449177-48449196 None:intergenic 40.0%
TTTGCTTAACCTTCCGAAAG+CGG - chr1_3:48449245-48449264 Msa0122100:CDS 40.0%
!! TTCGACTTTTCAAGCAACAC+TGG + chr1_3:48449339-48449358 None:intergenic 40.0%
!! AGTGTTGCTTGAAAAGTCGA+AGG - chr1_3:48449338-48449357 Msa0122100:CDS 40.0%
AGTCGAAGGCTAAAGTTACT+AGG - chr1_3:48449352-48449371 Msa0122100:CDS 40.0%
GTCGAAGGCTAAAGTTACTA+GGG - chr1_3:48449353-48449372 Msa0122100:CDS 40.0%
! CATGTACATGTGGGTTTTCA+AGG - chr1_3:48449455-48449474 Msa0122100:CDS 40.0%
!! GTTTCCTTTCAGTGTTGACA+AGG - chr1_3:48449554-48449573 Msa0122100:CDS 40.0%
AAACCCTTGTCAACACTGAA+AGG + chr1_3:48449561-48449580 None:intergenic 40.0%
!!! AGGGTTTTGTTCGATCTCAT+AGG - chr1_3:48449574-48449593 Msa0122100:CDS 40.0%
TTCGATCTCATAGGATGCAA+AGG - chr1_3:48449583-48449602 Msa0122100:CDS 40.0%
AGCTTCTTTGAGTGAGGAAT+TGG + chr1_3:48449837-48449856 None:intergenic 40.0%
AAGAAGCTCCTCAATGAATC+TGG - chr1_3:48449849-48449868 Msa0122100:CDS 40.0%
AGAAGCTCCTCAATGAATCT+GGG - chr1_3:48449850-48449869 Msa0122100:CDS 40.0%
AATTCAGCCCAGATTCATTG+AGG + chr1_3:48449860-48449879 None:intergenic 40.0%
! CCTTTTCTTGCTACTGATAG+GGG + chr1_3:48449922-48449941 None:intergenic 40.0%
CTGTTAATCCTCCATCTGAT+CGG - chr1_3:48449985-48450004 Msa0122100:intron 40.0%
! TCAACCAGTGTTGTTCACTA+GGG + chr1_3:48450031-48450050 None:intergenic 40.0%
! TTCAACCAGTGTTGTTCACT+AGG + chr1_3:48450032-48450051 None:intergenic 40.0%
!! CTGGTTGAATGATTTTAGCG+GGG - chr1_3:48450043-48450062 Msa0122100:intron 40.0%
!!! ATTGTTTTTGCAGCTGTAGC+CGG + chr1_3:48450089-48450108 None:intergenic 40.0%
ACACTAGGAAGATCCACAAA+AGG + chr1_3:48450152-48450171 None:intergenic 40.0%
CTCCAAGTAACTTTGACACT+AGG + chr1_3:48450167-48450186 None:intergenic 40.0%
CTAGTGTCAAAGTTACTTGG+AGG - chr1_3:48450165-48450184 Msa0122100:intron 40.0%
ATTTCGCGAACAAATTCTCC+AGG + chr1_3:48450308-48450327 None:intergenic 40.0%
GCTTCAATATTGGCATCTTC+AGG + chr1_3:48450350-48450369 None:intergenic 40.0%
ACATGAGATCATTACCATCC+AGG + chr1_3:48450481-48450500 None:intergenic 40.0%
TGAAGAGGTAATTCAATGGG+TGG - chr1_3:48448985-48449004 Msa0122100:CDS 40.0%
!! TCTCACTTGTTGTCTCTCAA+TGG - chr1_3:48449014-48449033 Msa0122100:CDS 40.0%
!! TTGACAAAAGTGTTGAAGGG+TGG + chr1_3:48449050-48449069 None:intergenic 40.0%
! CCCTTCAACACTTTTGTCAA+TGG - chr1_3:48449050-48449069 Msa0122100:CDS 40.0%
!! CTTTTGTCAATGGACTCAAG+TGG - chr1_3:48449060-48449079 Msa0122100:CDS 40.0%
TCACAAGGATCAGAATTCCA+CGG + chr1_3:48449177-48449196 None:intergenic 40.0%
TTTGCTTAACCTTCCGAAAG+CGG - chr1_3:48449245-48449264 Msa0122100:CDS 40.0%
!! TTCGACTTTTCAAGCAACAC+TGG + chr1_3:48449339-48449358 None:intergenic 40.0%
!! AGTGTTGCTTGAAAAGTCGA+AGG - chr1_3:48449338-48449357 Msa0122100:CDS 40.0%
AGTCGAAGGCTAAAGTTACT+AGG - chr1_3:48449352-48449371 Msa0122100:CDS 40.0%
GTCGAAGGCTAAAGTTACTA+GGG - chr1_3:48449353-48449372 Msa0122100:CDS 40.0%
! CATGTACATGTGGGTTTTCA+AGG - chr1_3:48449455-48449474 Msa0122100:CDS 40.0%
!! GTTTCCTTTCAGTGTTGACA+AGG - chr1_3:48449554-48449573 Msa0122100:CDS 40.0%
AAACCCTTGTCAACACTGAA+AGG + chr1_3:48449561-48449580 None:intergenic 40.0%
!!! AGGGTTTTGTTCGATCTCAT+AGG - chr1_3:48449574-48449593 Msa0122100:CDS 40.0%
TTCGATCTCATAGGATGCAA+AGG - chr1_3:48449583-48449602 Msa0122100:CDS 40.0%
AGCTTCTTTGAGTGAGGAAT+TGG + chr1_3:48449837-48449856 None:intergenic 40.0%
AAGAAGCTCCTCAATGAATC+TGG - chr1_3:48449849-48449868 Msa0122100:CDS 40.0%
AGAAGCTCCTCAATGAATCT+GGG - chr1_3:48449850-48449869 Msa0122100:CDS 40.0%
AATTCAGCCCAGATTCATTG+AGG + chr1_3:48449860-48449879 None:intergenic 40.0%
! CCTTTTCTTGCTACTGATAG+GGG + chr1_3:48449922-48449941 None:intergenic 40.0%
CTGTTAATCCTCCATCTGAT+CGG - chr1_3:48449985-48450004 Msa0122100:intron 40.0%
! TCAACCAGTGTTGTTCACTA+GGG + chr1_3:48450031-48450050 None:intergenic 40.0%
! TTCAACCAGTGTTGTTCACT+AGG + chr1_3:48450032-48450051 None:intergenic 40.0%
!! CTGGTTGAATGATTTTAGCG+GGG - chr1_3:48450043-48450062 Msa0122100:intron 40.0%
!!! ATTGTTTTTGCAGCTGTAGC+CGG + chr1_3:48450089-48450108 None:intergenic 40.0%
ACACTAGGAAGATCCACAAA+AGG + chr1_3:48450152-48450171 None:intergenic 40.0%
CTCCAAGTAACTTTGACACT+AGG + chr1_3:48450167-48450186 None:intergenic 40.0%
CTAGTGTCAAAGTTACTTGG+AGG - chr1_3:48450165-48450184 Msa0122100:intron 40.0%
ATTTCGCGAACAAATTCTCC+AGG + chr1_3:48450308-48450327 None:intergenic 40.0%
GCTTCAATATTGGCATCTTC+AGG + chr1_3:48450350-48450369 None:intergenic 40.0%
ACATGAGATCATTACCATCC+AGG + chr1_3:48450481-48450500 None:intergenic 40.0%
AGGGGTAAATTGATATCGGG+CGG + chr1_3:48449141-48449160 None:intergenic 45.0%
!! GATGTTGGTCTTGGTACTCA+AGG - chr1_3:48449204-48449223 Msa0122100:CDS 45.0%
ATTTCTTCACCGCTTTCGGA+AGG + chr1_3:48449257-48449276 None:intergenic 45.0%
GAGCATTTCTTCACCGCTTT+CGG + chr1_3:48449261-48449280 None:intergenic 45.0%
!! GAGGCGTGTTGATAGCATTT+GGG - chr1_3:48449281-48449300 Msa0122100:CDS 45.0%
!! AGGCGTGTTGATAGCATTTG+GGG - chr1_3:48449282-48449301 Msa0122100:CDS 45.0%
! TTGATAGCATTTGGGGTGCT+TGG - chr1_3:48449289-48449308 Msa0122100:CDS 45.0%
!! GGGGTGCTTGGTTTTTCTTT+AGG - chr1_3:48449301-48449320 Msa0122100:CDS 45.0%
GTTACTAGGGATGACAGCAA+TGG - chr1_3:48449366-48449385 Msa0122100:CDS 45.0%
GGATGACAGCAATGGTGTTT+CGG - chr1_3:48449374-48449393 Msa0122100:CDS 45.0%
GATGACAGCAATGGTGTTTC+GGG - chr1_3:48449375-48449394 Msa0122100:CDS 45.0%
ATGACAGCAATGGTGTTTCG+GGG - chr1_3:48449376-48449395 Msa0122100:CDS 45.0%
!! ACATGTGGGTTTTCAAGGAG+AGG - chr1_3:48449460-48449479 Msa0122100:CDS 45.0%
! ATCTTCCCCAAAGCATTCTC+CGG + chr1_3:48449486-48449505 None:intergenic 45.0%
CAGCTGAGGAGTTACATGAA+CGG - chr1_3:48449507-48449526 Msa0122100:CDS 45.0%
GATGCAAAGGAAGCAGTACA+GGG - chr1_3:48449596-48449615 Msa0122100:CDS 45.0%
ATGCAAAGGAAGCAGTACAG+GGG - chr1_3:48449597-48449616 Msa0122100:CDS 45.0%
TCAAATCCTCAGTGTCTGCA+TGG - chr1_3:48449624-48449643 Msa0122100:CDS 45.0%
TCAATACCATGCAGACACTG+AGG + chr1_3:48449633-48449652 None:intergenic 45.0%
AAGAAGTGGATGGAACTCAC+TGG - chr1_3:48449699-48449718 Msa0122100:CDS 45.0%
! ATTGGAGCACTCTTGATTGG+AGG + chr1_3:48449819-48449838 None:intergenic 45.0%
! GGAATTGGAGCACTCTTGAT+TGG + chr1_3:48449822-48449841 None:intergenic 45.0%
TTGAGGAGCTTCTTTGAGTG+AGG + chr1_3:48449843-48449862 None:intergenic 45.0%
TCATATGCCTAACGGTGATG+CGG - chr1_3:48449887-48449906 Msa0122100:intron 45.0%
CCCCTATCAGTAGCAAGAAA+AGG - chr1_3:48449919-48449938 Msa0122100:intron 45.0%
AAATCCGGAATCCGATCAGA+TGG + chr1_3:48449999-48450018 None:intergenic 45.0%
ATCTGATCGGATTCCGGATT+TGG - chr1_3:48449998-48450017 Msa0122100:intron 45.0%
CTAGGGTGCATTTCCAAATC+CGG + chr1_3:48450014-48450033 None:intergenic 45.0%
GATGAAGAATGTCTGTGGAC+CGG - chr1_3:48450067-48450086 Msa0122100:intron 45.0%
TGGAGGAATACTCTCACTCA+TGG - chr1_3:48450182-48450201 Msa0122100:intron 45.0%
!! GAAGCTTACTATGATGGACC+AGG - chr1_3:48450365-48450384 Msa0122100:five_prime_UTR 45.0%
!! ATGATCTCAAGCACTGATCC+TGG + chr1_3:48450386-48450405 None:intergenic 45.0%
AGGATCAGTGCTTGAGATCA+TGG - chr1_3:48450385-48450404 Msa0122100:five_prime_UTR 45.0%
TCAGATCCAGGACGAAGTTT+AGG + chr1_3:48450413-48450432 None:intergenic 45.0%
ACTTCATGCTCTTCAGATCC+AGG + chr1_3:48450425-48450444 None:intergenic 45.0%
AGGGGTAAATTGATATCGGG+CGG + chr1_3:48449141-48449160 None:intergenic 45.0%
!! GATGTTGGTCTTGGTACTCA+AGG - chr1_3:48449204-48449223 Msa0122100:CDS 45.0%
ATTTCTTCACCGCTTTCGGA+AGG + chr1_3:48449257-48449276 None:intergenic 45.0%
GAGCATTTCTTCACCGCTTT+CGG + chr1_3:48449261-48449280 None:intergenic 45.0%
!! GAGGCGTGTTGATAGCATTT+GGG - chr1_3:48449281-48449300 Msa0122100:CDS 45.0%
!! AGGCGTGTTGATAGCATTTG+GGG - chr1_3:48449282-48449301 Msa0122100:CDS 45.0%
! TTGATAGCATTTGGGGTGCT+TGG - chr1_3:48449289-48449308 Msa0122100:CDS 45.0%
!! GGGGTGCTTGGTTTTTCTTT+AGG - chr1_3:48449301-48449320 Msa0122100:CDS 45.0%
GTTACTAGGGATGACAGCAA+TGG - chr1_3:48449366-48449385 Msa0122100:CDS 45.0%
GGATGACAGCAATGGTGTTT+CGG - chr1_3:48449374-48449393 Msa0122100:CDS 45.0%
GATGACAGCAATGGTGTTTC+GGG - chr1_3:48449375-48449394 Msa0122100:CDS 45.0%
ATGACAGCAATGGTGTTTCG+GGG - chr1_3:48449376-48449395 Msa0122100:CDS 45.0%
!! ACATGTGGGTTTTCAAGGAG+AGG - chr1_3:48449460-48449479 Msa0122100:CDS 45.0%
! ATCTTCCCCAAAGCATTCTC+CGG + chr1_3:48449486-48449505 None:intergenic 45.0%
CAGCTGAGGAGTTACATGAA+CGG - chr1_3:48449507-48449526 Msa0122100:CDS 45.0%
GATGCAAAGGAAGCAGTACA+GGG - chr1_3:48449596-48449615 Msa0122100:CDS 45.0%
ATGCAAAGGAAGCAGTACAG+GGG - chr1_3:48449597-48449616 Msa0122100:CDS 45.0%
TCAAATCCTCAGTGTCTGCA+TGG - chr1_3:48449624-48449643 Msa0122100:CDS 45.0%
TCAATACCATGCAGACACTG+AGG + chr1_3:48449633-48449652 None:intergenic 45.0%
AAGAAGTGGATGGAACTCAC+TGG - chr1_3:48449699-48449718 Msa0122100:CDS 45.0%
! ATTGGAGCACTCTTGATTGG+AGG + chr1_3:48449819-48449838 None:intergenic 45.0%
! GGAATTGGAGCACTCTTGAT+TGG + chr1_3:48449822-48449841 None:intergenic 45.0%
TTGAGGAGCTTCTTTGAGTG+AGG + chr1_3:48449843-48449862 None:intergenic 45.0%
TCATATGCCTAACGGTGATG+CGG - chr1_3:48449887-48449906 Msa0122100:intron 45.0%
CCCCTATCAGTAGCAAGAAA+AGG - chr1_3:48449919-48449938 Msa0122100:intron 45.0%
AAATCCGGAATCCGATCAGA+TGG + chr1_3:48449999-48450018 None:intergenic 45.0%
ATCTGATCGGATTCCGGATT+TGG - chr1_3:48449998-48450017 Msa0122100:intron 45.0%
CTAGGGTGCATTTCCAAATC+CGG + chr1_3:48450014-48450033 None:intergenic 45.0%
GATGAAGAATGTCTGTGGAC+CGG - chr1_3:48450067-48450086 Msa0122100:intron 45.0%
TGGAGGAATACTCTCACTCA+TGG - chr1_3:48450182-48450201 Msa0122100:intron 45.0%
!! GAAGCTTACTATGATGGACC+AGG - chr1_3:48450365-48450384 Msa0122100:five_prime_UTR 45.0%
!! ATGATCTCAAGCACTGATCC+TGG + chr1_3:48450386-48450405 None:intergenic 45.0%
AGGATCAGTGCTTGAGATCA+TGG - chr1_3:48450385-48450404 Msa0122100:five_prime_UTR 45.0%
TCAGATCCAGGACGAAGTTT+AGG + chr1_3:48450413-48450432 None:intergenic 45.0%
ACTTCATGCTCTTCAGATCC+AGG + chr1_3:48450425-48450444 None:intergenic 45.0%
!! TAAATAAATAATTTAATTGT+TGG + chr1_3:48448454-48448473 None:intergenic 5.0%
!! TAAATAAATAATTTAATTGT+TGG + chr1_3:48448454-48448473 None:intergenic 5.0%
!! GTTGGTCTTGGTACTCAAGG+TGG - chr1_3:48449207-48449226 Msa0122100:CDS 50.0%
AAGCGGTGAAGAAATGCTCG+AGG - chr1_3:48449262-48449281 Msa0122100:CDS 50.0%
!! CGAGGCGTGTTGATAGCATT+TGG - chr1_3:48449280-48449299 Msa0122100:CDS 50.0%
ATGAACGGACATTCTCGCCA+AGG - chr1_3:48449522-48449541 Msa0122100:CDS 50.0%
TGAACGGACATTCTCGCCAA+GGG - chr1_3:48449523-48449542 Msa0122100:CDS 50.0%
GGATGCAAAGGAAGCAGTAC+AGG - chr1_3:48449595-48449614 Msa0122100:CDS 50.0%
ACAGGGATGAGCAGAAGAAG+TGG - chr1_3:48449685-48449704 Msa0122100:CDS 50.0%
GGATGAGCAGAAGAAGTGGA+TGG - chr1_3:48449689-48449708 Msa0122100:CDS 50.0%
TCCTCCATCTGATCGGATTC+CGG - chr1_3:48449992-48450011 Msa0122100:intron 50.0%
TGCACCCTAGTGAACAACAC+TGG - chr1_3:48450024-48450043 Msa0122100:intron 50.0%
GGGGTGATGAAGAATGTCTG+TGG - chr1_3:48450062-48450081 Msa0122100:intron 50.0%
CGCGAACAAATTCTCCAGGA+GGG + chr1_3:48450304-48450323 None:intergenic 50.0%
TCGCGAACAAATTCTCCAGG+AGG + chr1_3:48450305-48450324 None:intergenic 50.0%
ATGGTGCCTAAACTTCGTCC+TGG - chr1_3:48450404-48450423 Msa0122100:five_prime_UTR 50.0%
GATTAGGACGAAGGCAGACA+CGG + chr1_3:48450448-48450467 None:intergenic 50.0%
GTCTGCCTTCGTCCTAATCT+TGG - chr1_3:48450449-48450468 Msa0122100:five_prime_UTR 50.0%
TGCCTTCGTCCTAATCTTGG+TGG - chr1_3:48450452-48450471 Msa0122100:five_prime_UTR 50.0%
TGCCACCAAGATTAGGACGA+AGG + chr1_3:48450457-48450476 None:intergenic 50.0%
! TCCTAATCTTGGTGGCAACC+TGG - chr1_3:48450460-48450479 Msa0122100:five_prime_UTR 50.0%
TCCAGGTTGCCACCAAGATT+AGG + chr1_3:48450464-48450483 None:intergenic 50.0%
! AATCTTGGTGGCAACCTGGA+TGG - chr1_3:48450464-48450483 Msa0122100:five_prime_UTR 50.0%
!! GTTGGTCTTGGTACTCAAGG+TGG - chr1_3:48449207-48449226 Msa0122100:CDS 50.0%
AAGCGGTGAAGAAATGCTCG+AGG - chr1_3:48449262-48449281 Msa0122100:CDS 50.0%
!! CGAGGCGTGTTGATAGCATT+TGG - chr1_3:48449280-48449299 Msa0122100:CDS 50.0%
ATGAACGGACATTCTCGCCA+AGG - chr1_3:48449522-48449541 Msa0122100:CDS 50.0%
TGAACGGACATTCTCGCCAA+GGG - chr1_3:48449523-48449542 Msa0122100:CDS 50.0%
GGATGCAAAGGAAGCAGTAC+AGG - chr1_3:48449595-48449614 Msa0122100:CDS 50.0%
ACAGGGATGAGCAGAAGAAG+TGG - chr1_3:48449685-48449704 Msa0122100:CDS 50.0%
GGATGAGCAGAAGAAGTGGA+TGG - chr1_3:48449689-48449708 Msa0122100:CDS 50.0%
TCCTCCATCTGATCGGATTC+CGG - chr1_3:48449992-48450011 Msa0122100:intron 50.0%
TGCACCCTAGTGAACAACAC+TGG - chr1_3:48450024-48450043 Msa0122100:intron 50.0%
GGGGTGATGAAGAATGTCTG+TGG - chr1_3:48450062-48450081 Msa0122100:intron 50.0%
CGCGAACAAATTCTCCAGGA+GGG + chr1_3:48450304-48450323 None:intergenic 50.0%
TCGCGAACAAATTCTCCAGG+AGG + chr1_3:48450305-48450324 None:intergenic 50.0%
ATGGTGCCTAAACTTCGTCC+TGG - chr1_3:48450404-48450423 Msa0122100:five_prime_UTR 50.0%
GATTAGGACGAAGGCAGACA+CGG + chr1_3:48450448-48450467 None:intergenic 50.0%
GTCTGCCTTCGTCCTAATCT+TGG - chr1_3:48450449-48450468 Msa0122100:five_prime_UTR 50.0%
TGCCTTCGTCCTAATCTTGG+TGG - chr1_3:48450452-48450471 Msa0122100:five_prime_UTR 50.0%
TGCCACCAAGATTAGGACGA+AGG + chr1_3:48450457-48450476 None:intergenic 50.0%
! TCCTAATCTTGGTGGCAACC+TGG - chr1_3:48450460-48450479 Msa0122100:five_prime_UTR 50.0%
TCCAGGTTGCCACCAAGATT+AGG + chr1_3:48450464-48450483 None:intergenic 50.0%
! AATCTTGGTGGCAACCTGGA+TGG - chr1_3:48450464-48450483 Msa0122100:five_prime_UTR 50.0%
GGATCAGAATTCCACGGCTG+CGG + chr1_3:48449171-48449190 None:intergenic 55.0%
!! GTGGGTTTTCAAGGAGAGGC+CGG - chr1_3:48449464-48449483 Msa0122100:CDS 55.0%
GAGAGGCCGGAGAATGCTTT+GGG - chr1_3:48449477-48449496 Msa0122100:CDS 55.0%
AGAGGCCGGAGAATGCTTTG+GGG - chr1_3:48449478-48449497 Msa0122100:CDS 55.0%
! CTTTGGGGAAGATGCAGCTG+AGG - chr1_3:48449493-48449512 Msa0122100:CDS 55.0%
GAACGGACATTCTCGCCAAG+GGG - chr1_3:48449524-48449543 Msa0122100:CDS 55.0%
AAGGAAACGGACGTTCCCCT+TGG + chr1_3:48449542-48449561 None:intergenic 55.0%
TGAGCCGAAGTCGCTTGCTT+CGG + chr1_3:48449751-48449770 None:intergenic 55.0%
AAGCAAGCGACTTCGGCTCA+TGG - chr1_3:48449751-48449770 Msa0122100:CDS 55.0%
GCACTCTTGATTGGAGGAGG+TGG + chr1_3:48449813-48449832 None:intergenic 55.0%
! GGAGCACTCTTGATTGGAGG+AGG + chr1_3:48449816-48449835 None:intergenic 55.0%
AAGTCAGCCGCATCACCGTT+AGG + chr1_3:48449897-48449916 None:intergenic 55.0%
TCCGGAATCCGATCAGATGG+AGG + chr1_3:48449996-48450015 None:intergenic 55.0%
GGATCAGAATTCCACGGCTG+CGG + chr1_3:48449171-48449190 None:intergenic 55.0%
!! GTGGGTTTTCAAGGAGAGGC+CGG - chr1_3:48449464-48449483 Msa0122100:CDS 55.0%
GAGAGGCCGGAGAATGCTTT+GGG - chr1_3:48449477-48449496 Msa0122100:CDS 55.0%
AGAGGCCGGAGAATGCTTTG+GGG - chr1_3:48449478-48449497 Msa0122100:CDS 55.0%
! CTTTGGGGAAGATGCAGCTG+AGG - chr1_3:48449493-48449512 Msa0122100:CDS 55.0%
GAACGGACATTCTCGCCAAG+GGG - chr1_3:48449524-48449543 Msa0122100:CDS 55.0%
AAGGAAACGGACGTTCCCCT+TGG + chr1_3:48449542-48449561 None:intergenic 55.0%
TGAGCCGAAGTCGCTTGCTT+CGG + chr1_3:48449751-48449770 None:intergenic 55.0%
AAGCAAGCGACTTCGGCTCA+TGG - chr1_3:48449751-48449770 Msa0122100:CDS 55.0%
GCACTCTTGATTGGAGGAGG+TGG + chr1_3:48449813-48449832 None:intergenic 55.0%
! GGAGCACTCTTGATTGGAGG+AGG + chr1_3:48449816-48449835 None:intergenic 55.0%
AAGTCAGCCGCATCACCGTT+AGG + chr1_3:48449897-48449916 None:intergenic 55.0%
TCCGGAATCCGATCAGATGG+AGG + chr1_3:48449996-48450015 None:intergenic 55.0%
GGAGAGGCCGGAGAATGCTT+TGG - chr1_3:48449476-48449495 Msa0122100:CDS 60.0%
CAAGCGACTTCGGCTCATGG+AGG - chr1_3:48449754-48449773 Msa0122100:CDS 60.0%
GGAGAGGCCGGAGAATGCTT+TGG - chr1_3:48449476-48449495 Msa0122100:CDS 60.0%
CAAGCGACTTCGGCTCATGG+AGG - chr1_3:48449754-48449773 Msa0122100:CDS 60.0%
CGAAGTCGCTTGCTTCGGCC+GGG + chr1_3:48449746-48449765 None:intergenic 65.0%
CCGAAGTCGCTTGCTTCGGC+CGG + chr1_3:48449747-48449766 None:intergenic 65.0%
CCGGCCGAAGCAAGCGACTT+CGG - chr1_3:48449744-48449763 Msa0122100:CDS 65.0%
!! GGAGGGCAGTGCTCTGAGGA+TGG + chr1_3:48450287-48450306 None:intergenic 65.0%
!! TCCTCAGAGCACTGCCCTCC+TGG - chr1_3:48450287-48450306 Msa0122100:CDS 65.0%
TCCAGGAGGGCAGTGCTCTG+AGG + chr1_3:48450291-48450310 None:intergenic 65.0%
CGAAGTCGCTTGCTTCGGCC+GGG + chr1_3:48449746-48449765 None:intergenic 65.0%
CCGAAGTCGCTTGCTTCGGC+CGG + chr1_3:48449747-48449766 None:intergenic 65.0%
CCGGCCGAAGCAAGCGACTT+CGG - chr1_3:48449744-48449763 Msa0122100:CDS 65.0%
!! GGAGGGCAGTGCTCTGAGGA+TGG + chr1_3:48450287-48450306 None:intergenic 65.0%
!! TCCTCAGAGCACTGCCCTCC+TGG - chr1_3:48450287-48450306 Msa0122100:CDS 65.0%
TCCAGGAGGGCAGTGCTCTG+AGG + chr1_3:48450291-48450310 None:intergenic 65.0%
! CACGGCTGCGGCACCGAAAG+GGG + chr1_3:48449159-48449178 None:intergenic 70.0%
! CCACGGCTGCGGCACCGAAA+GGG + chr1_3:48449160-48449179 None:intergenic 70.0%
! TCCACGGCTGCGGCACCGAA+AGG + chr1_3:48449161-48449180 None:intergenic 70.0%
! CACGGCTGCGGCACCGAAAG+GGG + chr1_3:48449159-48449178 None:intergenic 70.0%
! CCACGGCTGCGGCACCGAAA+GGG + chr1_3:48449160-48449179 None:intergenic 70.0%
! TCCACGGCTGCGGCACCGAA+AGG + chr1_3:48449161-48449180 None:intergenic 70.0%
!! CCCTTTCGGTGCCGCAGCCG+TGG - chr1_3:48449157-48449176 Msa0122100:CDS 75.0%
!! CCCTTTCGGTGCCGCAGCCG+TGG - chr1_3:48449157-48449176 Msa0122100:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48448367 48450508 48448367 ID=Msa0122100;Name=Msa0122100
chr1_3 mRNA 48448367 48450508 48448367 ID=Msa0122100-mRNA-1;Parent=Msa0122100;Name=Msa0122100-mRNA-1;_AED=0.30;_eAED=0.31;_QI=180|0|0.5|1|0|0|2|0|527
chr1_3 exon 48448367 48449885 48448367 ID=Msa0122100-mRNA-1:exon:14637;Parent=Msa0122100-mRNA-1
chr1_3 exon 48450264 48450508 48450264 ID=Msa0122100-mRNA-1:exon:14636;Parent=Msa0122100-mRNA-1
chr1_3 five_prime_UTR 48450329 48450508 48450329 ID=Msa0122100-mRNA-1:five_prime_utr;Parent=Msa0122100-mRNA-1
chr1_3 CDS 48450264 48450328 48450264 ID=Msa0122100-mRNA-1:cds;Parent=Msa0122100-mRNA-1
chr1_3 CDS 48448367 48449885 48448367 ID=Msa0122100-mRNA-1:cds;Parent=Msa0122100-mRNA-1
Gene Sequence

>Msa0122100

ATGATGATGAAGCGCATAATCGGTGATTCGTCTTCAATTCCATTTTTCGATTCTTTTTCTCAAAGAGGTAATTCAATGGGTGGTTCTCTTCTCACTTGTTGTCTCTCAATGGAGAATCATCACCACCCTTCAACACTTTTGTCAATGGACTCAAGTGGATGTTCTCATGATGAGCTAGATTTAGAGATGAATAGACAGGTTATACTTTCGCGTCCGCCCGATATCAATTTACCCCTTTCGGTGCCGCAGCCGTGGAATTCTGATCCTTGTGATATTTTGGATGTTGGTCTTGGTACTCAAGGTGGTTATGAGACTGAGAGTTTGCTTAACCTTCCGAAAGCGGTGAAGAAATGCTCGAGGCGTGTTGATAGCATTTGGGGTGCTTGGTTTTTCTTTAGGTTTTATTTTAAGCCAGTGTTGCTTGAAAAGTCGAAGGCTAAAGTTACTAGGGATGACAGCAATGGTGTTTCGGGGTTTGATAAAACGGATCTGAATAATGATGTTTTTATGGTTCAGCATGATTTGGAAAACATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAATGCTTTGGGGAAGATGCAGCTGAGGAGTTACATGAACGGACATTCTCGCCAAGGGGAACGTCCGTTTCCTTTCAGTGTTGACAAGGGTTTTGTTCGATCTCATAGGATGCAAAGGAAGCAGTACAGGGGACTTTCAAATCCTCAGTGTCTGCATGGTATTGAACTTGTTTCGTCGCCTAATCTTTCAAGTCTTGACAGGGATGAGCAGAAGAAGTGGATGGAACTCACTGGCCGAGATTTGAATTTCATAATCCCGGCCGAAGCAAGCGACTTCGGCTCATGGAGGAATCTTCCGAACACAGATTTTGAGCTTGAGAGACCACCTCCTCCAATCAAGAGTGCTCCAATTCCTCACTCAAAGAAGCTCCTCAATGAATCTGGGCTGAATTTGTCTACTCATATGCCTAACGGTGATGCGGCTGACTTGTCCCCTATCAGTAGCAAGAAAAGGAAGGACTTTTTCCTTAATGGGAATGATGAAGAATGTTACTTGGCTGTTAATCCTCCATCTGATCGGATTCCGGATTTGGAAATGCACCCTAGTGAACAACACTGGTTGAATGATTTTAGCGGGGTGATGAAGAATGTCTGTGGACCGGCTACAGCTGCAAAAACAATTTATGAGGATGAGCAAGGTTACTTGATCATTATCAGTTTGCCTTTTGTGGATCTTCCTAGTGTCAAAGTTACTTGGAGGAATACTCTCACTCATGGTATCATAAAGGTTTCTTGTGTCAGCACATCACGAAAGCAATTTATCAAGAGAAATGATAGGACATTCAAGCTCACAGATCCATCCTCAGAGCACTGCCCTCCTGGAGAATTTGTTCGCGAAATCCCTCTTTTAACTCGTATTCCTGAAGATGCCAATATTGAAGCTTACTATGATGGACCAGGATCAGTGCTTGAGATCATGGTGCCTAAACTTCGTCCTGGATCTGAAGAGCATGAAGTCCGTGTCTGCCTTCGTCCTAATCTTGGTGGCAACCTGGATGGTAATGATCTCATGTTGACTTGA
Protein sequence

>Msa0122100

MMMKRIIGDSSSIPFFDSFSQRGNSMGGSLLTCCLSMENHHHPSTLLSMDSSGCSHDELDLEMNRQVILSRPPDINLPLSVPQPWNSDPCDILDVGLGTQGGYETESLLNLPKAVKKCSRRVDSIWGAWFFFRFYFKPVLLEKSKAKVTRDDSNGVSGFDKTDLNNDVFMVQHDLENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKQYRGLSNPQCLHGIELVSSPNLSSLDRDEQKKWMELTGRDLNFIIPAEASDFGSWRNLPNTDFELERPPPPIKSAPIPHSKKLLNESGLNLSTHMPNGDAADLSPISSKKRKDFFLNGNDEECYLAVNPPSDRIPDLEMHPSEQHWLNDFSGVMKNVCGPATAAKTIYEDEQGYLIIISLPFVDLPSVKVTWRNTLTHGIIKVSCVSTSRKQFIKRNDRTFKLTDPSSEHCPPGEFVREIPLLTRIPEDANIEAYYDGPGSVLEIMVPKLRPGSEEHEVRVCLRPNLGGNLDGNDLMLT*