Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129470 | 4G78_A | 98.649 | 148 | 2 | 0 | 1 | 148 | 4 | 151 | 1.32e-103 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129470 | sp|Q9ZNV8|AHP2_ARATH | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.88e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129470 | G7I2T8 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 8.53e-104 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129470 | Msa1277670 | 0.800538 | 1.375413e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129470 | MtrunA17_Chr1g0196361 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 1.64e-107 | 302 |
| Msa0129470 | MtrunA17_Chr1g0191351 | 49.645 | 141 | 71 | 0 | 1 | 141 | 4 | 144 | 3.38e-52 | 162 |
| Msa0129470 | MtrunA17_Chr7g0273321 | 51.471 | 136 | 65 | 1 | 7 | 141 | 6 | 141 | 4.51e-50 | 157 |
| Msa0129470 | MtrunA17_Chr2g0286781 | 55.245 | 143 | 64 | 0 | 3 | 145 | 5 | 147 | 7.71e-50 | 156 |
| Msa0129470 | MtrunA17_Chr2g0331021 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 8.63e-36 | 120 |
| Msa0129470 | MtrunA17_Chr2g0331011 | 40.769 | 130 | 77 | 0 | 5 | 134 | 7 | 136 | 2.15e-35 | 120 |
| Msa0129470 | MtrunA17_Chr2g0333131 | 47.761 | 134 | 67 | 2 | 13 | 143 | 18 | 151 | 6.35e-30 | 106 |
| Msa0129470 | MtrunA17_Chr4g0003251 | 48.872 | 133 | 63 | 3 | 15 | 143 | 8 | 139 | 5.97e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129470 | AT3G29350.1 | 54.286 | 140 | 63 | 1 | 3 | 141 | 7 | 146 | 2.93e-52 | 163 |
| Msa0129470 | AT1G03430.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 8 | 155 | 9.21e-52 | 162 |
| Msa0129470 | AT5G39340.1 | 52.703 | 148 | 69 | 1 | 3 | 149 | 7 | 154 | 1.69e-50 | 159 |
| Msa0129470 | AT5G39340.4 | 52.703 | 148 | 69 | 1 | 3 | 149 | 40 | 187 | 5.42e-50 | 158 |
| Msa0129470 | AT5G39340.2 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0129470 | AT5G39340.3 | 52.703 | 148 | 69 | 1 | 3 | 149 | 56 | 203 | 1.20e-49 | 158 |
| Msa0129470 | AT1G03430.2 | 54.887 | 133 | 59 | 1 | 3 | 134 | 8 | 140 | 1.75e-49 | 156 |
| Msa0129470 | AT3G21510.1 | 55.474 | 137 | 61 | 0 | 5 | 141 | 7 | 143 | 9.06e-48 | 152 |
| Msa0129470 | AT3G16360.2 | 49.587 | 121 | 61 | 0 | 14 | 134 | 11 | 131 | 4.19e-42 | 137 |
| Msa0129470 | AT3G29350.2 | 55.556 | 108 | 47 | 1 | 3 | 109 | 7 | 114 | 9.64e-41 | 132 |
| Msa0129470 | AT3G16360.1 | 49.580 | 119 | 60 | 0 | 18 | 136 | 9 | 127 | 1.51e-40 | 132 |
| Msa0129470 | AT1G80100.1 | 47.015 | 134 | 68 | 2 | 13 | 143 | 18 | 151 | 5.73e-24 | 91.3 |
| Msa0129470 | AT1G80100.3 | 43.704 | 135 | 75 | 1 | 1 | 134 | 6 | 140 | 1.31e-21 | 85.5 |
| Msa0129470 | AT4G04402.1 | 38.060 | 134 | 72 | 3 | 19 | 141 | 24 | 157 | 5.57e-20 | 81.3 |
| Msa0129470 | AT1G80100.2 | 42.857 | 133 | 53 | 3 | 13 | 143 | 18 | 129 | 1.96e-17 | 73.9 |
Find 34 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTCTGGTGTCTGTTTC+TGG | 0.121383 | 1_3:+59443761 | None:intergenic |
| GAAATAAGTCTCAAGTTTAT+TGG | 0.165458 | 1_3:+59440327 | None:intergenic |
| CAATCTTAAATACCTATTTA+AGG | 0.205789 | 1_3:-59440715 | Msa0129470:intron |
| TTAAGAAAACTCACCCTTCC+AGG | 0.303814 | 1_3:+59442627 | None:intergenic |
| TCTCAATTCAACAGAGAAAC+AGG | 0.320515 | 1_3:+59443689 | None:intergenic |
| GATTATTCCTTCAGAATTAG+AGG | 0.326468 | 1_3:-59440428 | Msa0129470:three_prime_UTR |
| TAACAGTACATACCTTAAAT+AGG | 0.333879 | 1_3:+59440703 | None:intergenic |
| AGACATATATGTGCAAATTA+AGG | 0.357159 | 1_3:-59443853 | Msa0129470:five_prime_UTR |
| TTAGAGGATGTTTGAATGTT+GGG | 0.357279 | 1_3:-59440412 | Msa0129470:three_prime_UTR |
| TTCAGAATGACATGATATAA+TGG | 0.366356 | 1_3:-59440230 | None:intergenic |
| TCTGGTGTCTGTTTCTGGTC+TGG | 0.376073 | 1_3:+59443766 | None:intergenic |
| ATTAGAGGATGTTTGAATGT+TGG | 0.391133 | 1_3:-59440413 | Msa0129470:three_prime_UTR |
| TTTCTGGTCTGGTCTGAATT+CGG | 0.403513 | 1_3:+59443777 | None:intergenic |
| CAACAGAGAAACAGGGTTGA+AGG | 0.415507 | 1_3:+59443697 | None:intergenic |
| ATAACCTCAATCACAAAATC+AGG | 0.417121 | 1_3:+59443364 | None:intergenic |
| CGAAGCTGCTATGTTTCAAC+AGG | 0.430572 | 1_3:-59443608 | Msa0129470:intron |
| TGCTCATGCCCATCAACAAA+AGG | 0.448350 | 1_3:-59442824 | Msa0129470:CDS |
| ATGTCTGCAACAATTGCAAC+AGG | 0.460807 | 1_3:-59440757 | Msa0129470:CDS |
| GGATAGAACAGATGTGGATA+AGG | 0.474274 | 1_3:-59440391 | Msa0129470:three_prime_UTR |
| GCAGCTGCAACAAGAAATCA+AGG | 0.482473 | 1_3:-59440575 | Msa0129470:intron |
| TCTATTTGTTTAAAATTCAC+AGG | 0.488923 | 1_3:+59442847 | None:intergenic |
| GTTGAAACATAGCAGCTTCG+TGG | 0.501753 | 1_3:+59443611 | None:intergenic |
| TGCGAGGCTCAGAACCTGGA+AGG | 0.534171 | 1_3:-59442641 | Msa0129470:CDS |
| ACTAAAGGGGAAAGAAAGTA+CGG | 0.554447 | 1_3:-59443878 | Msa0129470:five_prime_UTR |
| GCTCATGCCCATCAACAAAA+GGG | 0.561552 | 1_3:-59442823 | Msa0129470:CDS |
| CAAACATCCTCTAATTCTGA+AGG | 0.563687 | 1_3:+59440421 | None:intergenic |
| GCGAGGCTCAGAACCTGGAA+GGG | 0.598860 | 1_3:-59442640 | Msa0129470:intron |
| CATATATGTGCAAATTAAGG+AGG | 0.604606 | 1_3:-59443850 | Msa0129470:five_prime_UTR |
| AACACATGGATCACTTACAT+AGG | 0.611392 | 1_3:-59443645 | Msa0129470:exon |
| AACAAAAGGGAAGCAGTGCT+AGG | 0.617678 | 1_3:-59442810 | Msa0129470:intron |
| TTTGTTTGTTTCCGAAAACG+AGG | 0.622533 | 1_3:+59443823 | None:intergenic |
| CTCAATTCAACAGAGAAACA+GGG | 0.638338 | 1_3:+59443690 | None:intergenic |
| ATGTTGGGATAGAACAGATG+TGG | 0.668847 | 1_3:-59440397 | Msa0129470:three_prime_UTR |
| TCGAATCAGAAAATAACACA+TGG | 0.680378 | 1_3:-59443659 | Msa0129470:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGAATACAAAAAAAAAA+GGG | + | chr1_3:59440614-59440633 | None:intergenic | 10.0% |
| !! | AATAAGAATACAAAAAAAAA+AGG | + | chr1_3:59440615-59440634 | None:intergenic | 10.0% |
| !!! | ATTTATATTACATACAATTT+TGG | + | chr1_3:59442489-59442508 | None:intergenic | 10.0% |
| !! | ATAAATAGTACTAAAAATTC+TGG | + | chr1_3:59440393-59440412 | None:intergenic | 15.0% |
| !!! | AATTTGATATTATTGGTTAT+TGG | - | chr1_3:59440689-59440708 | Msa0129470:intron | 15.0% |
| !!! | ATTTGATATTATTGGTTATT+GGG | - | chr1_3:59440690-59440709 | Msa0129470:intron | 15.0% |
| !! | AACATCTTAATCAATTAAAA+AGG | - | chr1_3:59441012-59441031 | Msa0129470:intron | 15.0% |
| !! | ATTTGAAAAAGAAAAATAAC+AGG | + | chr1_3:59442174-59442193 | None:intergenic | 15.0% |
| !! | ATTGCTATATATATGATATT+AGG | + | chr1_3:59442816-59442835 | None:intergenic | 15.0% |
| !!! | TCTATTTTATATCAGTTATT+CGG | - | chr1_3:59443186-59443205 | Msa0129470:intron | 15.0% |
| !! | AATACAAGCAATATAATATA+CGG | + | chr1_3:59443535-59443554 | None:intergenic | 15.0% |
| !!! | TTTTTGACTTGAAATTGAAA+AGG | + | chr1_3:59440419-59440438 | None:intergenic | 20.0% |
| !!! | TTTGATATTATTGGTTATTG+GGG | - | chr1_3:59440691-59440710 | Msa0129470:intron | 20.0% |
| !! | TAATAGTAATAGTACTTACA+GGG | + | chr1_3:59440850-59440869 | None:intergenic | 20.0% |
| !! | ATAATAGTAATAGTACTTAC+AGG | + | chr1_3:59440851-59440870 | None:intergenic | 20.0% |
| !! | AATTATTGAATAATATGTGC+CGG | - | chr1_3:59441083-59441102 | Msa0129470:intron | 20.0% |
| !!! | TCTATTTGTTTAAAATTCAC+AGG | + | chr1_3:59441294-59441313 | None:intergenic | 20.0% |
| !! | TAAATAAAATCTACTTCCAT+AGG | + | chr1_3:59441404-59441423 | None:intergenic | 20.0% |
| !!! | ATTTATTTGTTAAACAGTGT+TGG | - | chr1_3:59441431-59441450 | Msa0129470:intron | 20.0% |
| !! | ATACAAACAAAAACAATTTG+GGG | + | chr1_3:59442029-59442048 | None:intergenic | 20.0% |
| !! | CATACAAACAAAAACAATTT+GGG | + | chr1_3:59442030-59442049 | None:intergenic | 20.0% |
| !! | TCATACAAACAAAAACAATT+TGG | + | chr1_3:59442031-59442050 | None:intergenic | 20.0% |
| !! | CACATCAATTTATATGTATT+AGG | + | chr1_3:59442090-59442109 | None:intergenic | 20.0% |
| !! | AAAGAAAAATAACAGGAATT+AGG | + | chr1_3:59442167-59442186 | None:intergenic | 20.0% |
| !!! | ATAAATTACTGAAGTGTTAT+TGG | - | chr1_3:59442192-59442211 | Msa0129470:intron | 20.0% |
| !! | TAAATATTAAAAAACGACAG+AGG | - | chr1_3:59442652-59442671 | Msa0129470:CDS | 20.0% |
| !! | GAAATATTAAAAAATGACAG+AGG | - | chr1_3:59442709-59442728 | Msa0129470:intron | 20.0% |
| !! | TATCATATATATAGCAATCT+TGG | - | chr1_3:59442818-59442837 | Msa0129470:CDS | 20.0% |
| !! | ATCATATATATAGCAATCTT+GGG | - | chr1_3:59442819-59442838 | Msa0129470:CDS | 20.0% |
| !!! | TCTGATTTGTATTATATGAA+AGG | - | chr1_3:59442925-59442944 | Msa0129470:intron | 20.0% |
| !!! | TGAAAGTCTAAAATTTAAGA+TGG | - | chr1_3:59443155-59443174 | Msa0129470:intron | 20.0% |
| !!! | ACAAAAAAAATGTTATTTGC+AGG | - | chr1_3:59443350-59443369 | Msa0129470:CDS | 20.0% |
| !! | CAATCTTAAATACCTATTTA+AGG | - | chr1_3:59443423-59443442 | Msa0129470:intron | 20.0% |
| !! | AATATAATATACGGAATAGA+TGG | + | chr1_3:59443526-59443545 | None:intergenic | 20.0% |
| ! | AGACATATATGTGCAAATTA+AGG | - | chr1_3:59440285-59440304 | Msa0129470:three_prime_UTR | 25.0% |
| ! | ACATGTAACGAAAAGATTAT+AGG | + | chr1_3:59440558-59440577 | None:intergenic | 25.0% |
| !! | TTGATATTATTGGTTATTGG+GGG | - | chr1_3:59440692-59440711 | Msa0129470:intron | 25.0% |
| ! | ATTATTGAATAATATGTGCC+GGG | - | chr1_3:59441084-59441103 | Msa0129470:intron | 25.0% |
| !! | TTTTCTTTGAATTAGATCCT+CGG | + | chr1_3:59441757-59441776 | None:intergenic | 25.0% |
| ! | GTAAGGGTTAAATACTAAAT+AGG | + | chr1_3:59441900-59441919 | None:intergenic | 25.0% |
| ! | AATGTTTGTGCAAAACTTTA+CGG | - | chr1_3:59442258-59442277 | Msa0129470:intron | 25.0% |
| !! | TTTCATTTGGTTTATAGGTA+GGG | + | chr1_3:59442359-59442378 | None:intergenic | 25.0% |
| !! | ATTTCATTTGGTTTATAGGT+AGG | + | chr1_3:59442360-59442379 | None:intergenic | 25.0% |
| !! | TGACATTTCATTTGGTTTAT+AGG | + | chr1_3:59442364-59442383 | None:intergenic | 25.0% |
| ! | GTTTATTGAGAAAGTAGTAT+TGG | - | chr1_3:59442398-59442417 | Msa0129470:intron | 25.0% |
| !! | TGGTTGTTCAATTTTGAATA+TGG | - | chr1_3:59442551-59442570 | Msa0129470:intron | 25.0% |
| !! | TTCAATTTTGAATATGGTCT+GGG | - | chr1_3:59442557-59442576 | Msa0129470:intron | 25.0% |
| !!! | TTCAAAAAAAGTATTCCCAT+GGG | + | chr1_3:59442598-59442617 | None:intergenic | 25.0% |
| !!! | ATTCAAAAAAAGTATTCCCA+TGG | + | chr1_3:59442599-59442618 | None:intergenic | 25.0% |
| !! | TACTGTAATTTTTATTGCAC+TGG | + | chr1_3:59442689-59442708 | None:intergenic | 25.0% |
| ! | TCATATATATAGCAATCTTG+GGG | - | chr1_3:59442820-59442839 | Msa0129470:CDS | 25.0% |
| ! | ACTAAACAAATAGAATCTAC+AGG | - | chr1_3:59442980-59442999 | Msa0129470:intron | 25.0% |
| ! | TAACAGTACATACCTTAAAT+AGG | + | chr1_3:59443438-59443457 | None:intergenic | 25.0% |
| !! | TTTTCTTGATTTCTAACTGT+TGG | + | chr1_3:59443636-59443655 | None:intergenic | 25.0% |
| ! | GAAATAAGTCTCAAGTTTAT+TGG | + | chr1_3:59443814-59443833 | None:intergenic | 25.0% |
| !!! | AGAGAGATTGTTTTGACTAA+AGG | - | chr1_3:59440245-59440264 | Msa0129470:three_prime_UTR | 30.0% |
| !!! | GAGAGATTGTTTTGACTAAA+GGG | - | chr1_3:59440246-59440265 | Msa0129470:three_prime_UTR | 30.0% |
| !!! | AGAGATTGTTTTGACTAAAG+GGG | - | chr1_3:59440247-59440266 | Msa0129470:three_prime_UTR | 30.0% |
| CATATATGTGCAAATTAAGG+AGG | - | chr1_3:59440288-59440307 | Msa0129470:three_prime_UTR | 30.0% | |
| TCGAATCAGAAAATAACACA+TGG | - | chr1_3:59440479-59440498 | Msa0129470:three_prime_UTR | 30.0% | |
| ATAACCTCAATCACAAAATC+AGG | + | chr1_3:59440777-59440796 | None:intergenic | 30.0% | |
| GTTATACCAAAAACTTTCGT+AGG | - | chr1_3:59441196-59441215 | Msa0129470:intron | 30.0% | |
| !!! | CTTTTAGTTTGTTTGATGCA+TGG | - | chr1_3:59441222-59441241 | Msa0129470:intron | 30.0% |
| GATGCATGGAAATATTAAAC+TGG | - | chr1_3:59441236-59441255 | Msa0129470:intron | 30.0% | |
| GCTAGAGTTAAAAATGTTTG+TGG | - | chr1_3:59441458-59441477 | Msa0129470:intron | 30.0% | |
| CTTAAATTCTTTCATGTTCC+CGG | - | chr1_3:59441529-59441548 | Msa0129470:intron | 30.0% | |
| TTTAAGCAGCTAAATGTTTC+CGG | + | chr1_3:59441551-59441570 | None:intergenic | 30.0% | |
| CAAGTCAGAATTATAGGTAA+GGG | + | chr1_3:59441916-59441935 | None:intergenic | 30.0% | |
| ACGAATTAAGCTAAAATCAG+TGG | + | chr1_3:59441964-59441983 | None:intergenic | 30.0% | |
| !!! | ACTGATTTTAGCTTAATTCG+TGG | - | chr1_3:59441963-59441982 | Msa0129470:intron | 30.0% |
| !!! | CCTTTTTTTACTCTCAAAAG+GGG | + | chr1_3:59442129-59442148 | None:intergenic | 30.0% |
| !!! | CCCTTTTTTTACTCTCAAAA+GGG | + | chr1_3:59442130-59442149 | None:intergenic | 30.0% |
| !! | CCCTTTTGAGAGTAAAAAAA+GGG | - | chr1_3:59442127-59442146 | Msa0129470:intron | 30.0% |
| GAGTAAAAAAAGGGCAAAAA+AGG | - | chr1_3:59442136-59442155 | Msa0129470:intron | 30.0% | |
| GAAAAATAACAGGAATTAGG+AGG | + | chr1_3:59442164-59442183 | None:intergenic | 30.0% | |
| TCAAAAGTAGAGAATTGTGT+AGG | + | chr1_3:59442229-59442248 | None:intergenic | 30.0% | |
| ATGTTTGTGCAAAACTTTAC+GGG | - | chr1_3:59442259-59442278 | Msa0129470:intron | 30.0% | |
| GACTTAGATGACATTTCATT+TGG | + | chr1_3:59442372-59442391 | None:intergenic | 30.0% | |
| TACTACTTTCTCAATAAACG+TGG | + | chr1_3:59442397-59442416 | None:intergenic | 30.0% | |
| GGATCTTGAGTAAATTTGTA+GGG | - | chr1_3:59442459-59442478 | Msa0129470:intron | 30.0% | |
| GATCTTGAGTAAATTTGTAG+GGG | - | chr1_3:59442460-59442479 | Msa0129470:intron | 30.0% | |
| ATCTTGAGTAAATTTGTAGG+GGG | - | chr1_3:59442461-59442480 | Msa0129470:intron | 30.0% | |
| ATTCAAAATTGAACAACCAC+TGG | + | chr1_3:59442550-59442569 | None:intergenic | 30.0% | |
| ! | GTTCAATTTTGAATATGGTC+TGG | - | chr1_3:59442556-59442575 | Msa0129470:intron | 30.0% |
| ! | TCAATTTTGAATATGGTCTG+GGG | - | chr1_3:59442558-59442577 | Msa0129470:intron | 30.0% |
| TATTAAAAAATGACAGAGGC+AGG | - | chr1_3:59442713-59442732 | Msa0129470:intron | 30.0% | |
| GTTATAACACAAATTTCCCT+TGG | + | chr1_3:59442789-59442808 | None:intergenic | 30.0% | |
| CATATATATAGCAATCTTGG+GGG | - | chr1_3:59442821-59442840 | Msa0129470:CDS | 30.0% | |
| ATATATATAGCAATCTTGGG+GGG | - | chr1_3:59442822-59442841 | Msa0129470:CDS | 30.0% | |
| AGATAGCAACAAAATTACTG+TGG | - | chr1_3:59443069-59443088 | Msa0129470:intron | 30.0% | |
| GATTATTGTGGACATTTCAT+TGG | + | chr1_3:59443220-59443239 | None:intergenic | 30.0% | |
| TGTCCACAATAATCCTTAAA+AGG | - | chr1_3:59443226-59443245 | Msa0129470:intron | 30.0% | |
| !! | ACACCTTTTAAGGATTATTG+TGG | + | chr1_3:59443232-59443251 | None:intergenic | 30.0% |
| ! | TCCTTAAAAGGTGTATTCAA+TGG | - | chr1_3:59443238-59443257 | Msa0129470:intron | 30.0% |
| ! | ACCATTGAATACACCTTTTA+AGG | + | chr1_3:59443242-59443261 | None:intergenic | 30.0% |
| GTGAATACTCCAACATTTAT+AGG | + | chr1_3:59443328-59443347 | None:intergenic | 30.0% | |
| ! | GTACTGTTACGTTTCATTTT+CGG | - | chr1_3:59443449-59443468 | Msa0129470:intron | 30.0% |
| ! | TCAAGCTATTTCGTTAAAGA+CGG | - | chr1_3:59443474-59443493 | Msa0129470:intron | 30.0% |
| GATTATTCCTTCAGAATTAG+AGG | - | chr1_3:59443710-59443729 | Msa0129470:five_prime_UTR | 30.0% | |
| ATTAGAGGATGTTTGAATGT+TGG | - | chr1_3:59443725-59443744 | Msa0129470:five_prime_UTR | 30.0% | |
| TTAGAGGATGTTTGAATGTT+GGG | - | chr1_3:59443726-59443745 | Msa0129470:five_prime_UTR | 30.0% | |
| ACTAAAGGGGAAAGAAAGTA+CGG | - | chr1_3:59440260-59440279 | Msa0129470:three_prime_UTR | 35.0% | |
| TTTGTTTGTTTCCGAAAACG+AGG | + | chr1_3:59440318-59440337 | None:intergenic | 35.0% | |
| AAAATTCTGGTGTCTGTTTC+TGG | + | chr1_3:59440380-59440399 | None:intergenic | 35.0% | |
| CTCAATTCAACAGAGAAACA+GGG | + | chr1_3:59440451-59440470 | None:intergenic | 35.0% | |
| TCTCAATTCAACAGAGAAAC+AGG | + | chr1_3:59440452-59440471 | None:intergenic | 35.0% | |
| AACACATGGATCACTTACAT+AGG | - | chr1_3:59440493-59440512 | Msa0129470:three_prime_UTR | 35.0% | |
| ! | TAGTCCTGATTTTGTGATTG+AGG | - | chr1_3:59440770-59440789 | Msa0129470:intron | 35.0% |
| GTTAGTGTCAATATCGTATC+TGG | + | chr1_3:59440951-59440970 | None:intergenic | 35.0% | |
| TACATAGCACAAAAGTTGGA+GGG | - | chr1_3:59441121-59441140 | Msa0129470:intron | 35.0% | |
| !!! | GAAAGTTTTTGGTATAACCC+AGG | + | chr1_3:59441194-59441213 | None:intergenic | 35.0% |
| ! | AAGTCACCTACGAAAGTTTT+TGG | + | chr1_3:59441205-59441224 | None:intergenic | 35.0% |
| TGTATTAGTGCACTAACCTA+TGG | - | chr1_3:59441385-59441404 | Msa0129470:intron | 35.0% | |
| TTAAGCAGCTAAATGTTTCC+GGG | + | chr1_3:59441550-59441569 | None:intergenic | 35.0% | |
| GGATTACAAAAGATACTACC+GGG | + | chr1_3:59441825-59441844 | None:intergenic | 35.0% | |
| GGGATTACAAAAGATACTAC+CGG | + | chr1_3:59441826-59441845 | None:intergenic | 35.0% | |
| !!! | GCTGAGAATAAGTTTTAGAG+GGG | + | chr1_3:59441846-59441865 | None:intergenic | 35.0% |
| !!! | CGCTGAGAATAAGTTTTAGA+GGG | + | chr1_3:59441847-59441866 | None:intergenic | 35.0% |
| !! | ACGCTGAGAATAAGTTTTAG+AGG | + | chr1_3:59441848-59441867 | None:intergenic | 35.0% |
| AACTTATTCTCAGCGTTCTT+TGG | - | chr1_3:59441852-59441871 | Msa0129470:intron | 35.0% | |
| CCAAGTCAGAATTATAGGTA+AGG | + | chr1_3:59441917-59441936 | None:intergenic | 35.0% | |
| CCTTACCTATAATTCTGACT+TGG | - | chr1_3:59441914-59441933 | Msa0129470:intron | 35.0% | |
| !! | CCCCTTTTGAGAGTAAAAAA+AGG | - | chr1_3:59442126-59442145 | Msa0129470:intron | 35.0% |
| !!! | GCCCTTTTTTTACTCTCAAA+AGG | + | chr1_3:59442131-59442150 | None:intergenic | 35.0% |
| CGGATCTTGAGTAAATTTGT+AGG | - | chr1_3:59442458-59442477 | Msa0129470:intron | 35.0% | |
| ! | CAATTTTGAATATGGTCTGG+GGG | - | chr1_3:59442559-59442578 | Msa0129470:intron | 35.0% |
| TATTAAAAAACGACAGAGGC+AGG | - | chr1_3:59442656-59442675 | Msa0129470:CDS | 35.0% | |
| ! | CAATAAGTTGAGAGACACAT+CGG | - | chr1_3:59443045-59443064 | Msa0129470:intron | 35.0% |
| CTCAACACTCATCAAAACAA+TGG | - | chr1_3:59443288-59443307 | Msa0129470:intron | 35.0% | |
| ACATCACTGCCTATAAATGT+TGG | - | chr1_3:59443316-59443335 | Msa0129470:CDS | 35.0% | |
| AATAGATGGTGTGTATTAGG+AGG | + | chr1_3:59443512-59443531 | None:intergenic | 35.0% | |
| !!! | TTGCTTGTTTTGGTTTTTGC+TGG | - | chr1_3:59443688-59443707 | Msa0129470:five_prime_UTR | 35.0% |
| CAAACATCCTCTAATTCTGA+AGG | + | chr1_3:59443720-59443739 | None:intergenic | 35.0% | |
| ! | AAGGAGGAAATCCTCGTTTT+CGG | - | chr1_3:59440304-59440323 | Msa0129470:three_prime_UTR | 40.0% |
| ! | TTTCTGGTCTGGTCTGAATT+CGG | + | chr1_3:59440364-59440383 | None:intergenic | 40.0% |
| GTGCTACATAGCACAAAAGT+TGG | - | chr1_3:59441117-59441136 | Msa0129470:intron | 40.0% | |
| CTACATAGCACAAAAGTTGG+AGG | - | chr1_3:59441120-59441139 | Msa0129470:intron | 40.0% | |
| ACCCTAGGATACGACAATTT+GGG | + | chr1_3:59441165-59441184 | None:intergenic | 40.0% | |
| TACCCTAGGATACGACAATT+TGG | + | chr1_3:59441166-59441185 | None:intergenic | 40.0% | |
| ! | ACTGCTTCCCTTTTGTTGAT+GGG | + | chr1_3:59441325-59441344 | None:intergenic | 40.0% |
| ! | CACGTTCAGAAATTTTTGCG+AGG | - | chr1_3:59441481-59441500 | Msa0129470:intron | 40.0% |
| TTAAGAAAACTCACCCTTCC+AGG | + | chr1_3:59441514-59441533 | None:intergenic | 40.0% | |
| CATATGTCCCCATGTATGTT+TGG | - | chr1_3:59441677-59441696 | Msa0129470:intron | 40.0% | |
| TTCGACACCAAACATACATG+GGG | + | chr1_3:59441687-59441706 | None:intergenic | 40.0% | |
| CTTCGACACCAAACATACAT+GGG | + | chr1_3:59441688-59441707 | None:intergenic | 40.0% | |
| ACTTCGACACCAAACATACA+TGG | + | chr1_3:59441689-59441708 | None:intergenic | 40.0% | |
| ! | AAAGCTTTATCACTCTTCCG+AGG | - | chr1_3:59441737-59441756 | Msa0129470:intron | 40.0% |
| AACTACATCTTGAATCTGCC+CGG | - | chr1_3:59441804-59441823 | Msa0129470:intron | 40.0% | |
| GGAGTCCAAGTCAGAATTAT+AGG | + | chr1_3:59441922-59441941 | None:intergenic | 40.0% | |
| CTCCTTCACAACTTATCTTG+AGG | - | chr1_3:59441938-59441957 | Msa0129470:intron | 40.0% | |
| ! | AGATGATCTGAAGTAGTCAG+TGG | - | chr1_3:59442435-59442454 | Msa0129470:intron | 40.0% |
| TACTTTCAGCGAAATTGCAC+TGG | + | chr1_3:59442746-59442765 | None:intergenic | 40.0% | |
| ACTCTTGTCAACTACTTCCA+GGG | + | chr1_3:59442883-59442902 | None:intergenic | 40.0% | |
| AACTCTTGTCAACTACTTCC+AGG | + | chr1_3:59442884-59442903 | None:intergenic | 40.0% | |
| GATGAGCAAACAGAAAACGT+AGG | - | chr1_3:59443022-59443041 | Msa0129470:intron | 40.0% | |
| AGACTTTAATCCTCACCTCT+TGG | - | chr1_3:59443107-59443126 | Msa0129470:intron | 40.0% | |
| AAAAGTTAGTCCAAGAGGTG+AGG | + | chr1_3:59443120-59443139 | None:intergenic | 40.0% | |
| ! | ACCTCTTGGACTAACTTTTG+AGG | - | chr1_3:59443121-59443140 | Msa0129470:intron | 40.0% |
| ACCTCAAAAGTTAGTCCAAG+AGG | + | chr1_3:59443125-59443144 | None:intergenic | 40.0% | |
| ATGTCTGCAACAATTGCAAC+AGG | - | chr1_3:59443381-59443400 | Msa0129470:CDS | 40.0% | |
| CGGAATAGATGGTGTGTATT+AGG | + | chr1_3:59443515-59443534 | None:intergenic | 40.0% | |
| !! | GCAGCTGATTTTGCTTGTTT+TGG | - | chr1_3:59443678-59443697 | Msa0129470:five_prime_UTR | 40.0% |
| ATGTTGGGATAGAACAGATG+TGG | - | chr1_3:59443741-59443760 | Msa0129470:five_prime_UTR | 40.0% | |
| GGATAGAACAGATGTGGATA+AGG | - | chr1_3:59443747-59443766 | Msa0129470:five_prime_UTR | 40.0% | |
| CAACAGAGAAACAGGGTTGA+AGG | + | chr1_3:59440444-59440463 | None:intergenic | 45.0% | |
| GTTGAAACATAGCAGCTTCG+TGG | + | chr1_3:59440530-59440549 | None:intergenic | 45.0% | |
| CGAAGCTGCTATGTTTCAAC+AGG | - | chr1_3:59440530-59440549 | Msa0129470:exon | 45.0% | |
| ! | TTATTGGTTATTGGGGGAGC+AGG | - | chr1_3:59440698-59440717 | Msa0129470:intron | 45.0% |
| ! | TATTGGTTATTGGGGGAGCA+GGG | - | chr1_3:59440699-59440718 | Msa0129470:intron | 45.0% |
| TGCCCAAATTGTCGTATCCT+AGG | - | chr1_3:59441160-59441179 | Msa0129470:intron | 45.0% | |
| GCCCAAATTGTCGTATCCTA+GGG | - | chr1_3:59441161-59441180 | Msa0129470:intron | 45.0% | |
| TATCCTAGGGTACGATACCT+GGG | - | chr1_3:59441174-59441193 | Msa0129470:intron | 45.0% | |
| TGCTCATGCCCATCAACAAA+AGG | - | chr1_3:59441314-59441333 | Msa0129470:intron | 45.0% | |
| GCTCATGCCCATCAACAAAA+GGG | - | chr1_3:59441315-59441334 | Msa0129470:intron | 45.0% | |
| ! | CACTGCTTCCCTTTTGTTGA+TGG | + | chr1_3:59441326-59441345 | None:intergenic | 45.0% |
| AACAAAAGGGAAGCAGTGCT+AGG | - | chr1_3:59441328-59441347 | Msa0129470:intron | 45.0% | |
| GGCCTCAAGATAAGTTGTGA+AGG | + | chr1_3:59441943-59441962 | None:intergenic | 45.0% | |
| ! | TGATCTGAAGTAGTCAGTGG+CGG | - | chr1_3:59442438-59442457 | Msa0129470:intron | 45.0% |
| TTGAACAACCACTGGACTGT+TGG | + | chr1_3:59442542-59442561 | None:intergenic | 45.0% | |
| CAAATTTCCCTTGGTTGCAG+TGG | + | chr1_3:59442780-59442799 | None:intergenic | 45.0% | |
| CTCTTGTCAACTACTTCCAG+GGG | + | chr1_3:59442882-59442901 | None:intergenic | 45.0% | |
| GCTCATCTATCACTGTGTTG+TGG | + | chr1_3:59443009-59443028 | None:intergenic | 45.0% | |
| GCAGCTGCAACAAGAAATCA+AGG | - | chr1_3:59443563-59443582 | Msa0129470:intron | 45.0% | |
| !! | TTTAATAAATTTGATATTAT+TGG | - | chr1_3:59440682-59440701 | Msa0129470:intron | 5.0% |
| !! | TCTGGTGTCTGTTTCTGGTC+TGG | + | chr1_3:59440375-59440394 | None:intergenic | 50.0% |
| GTATCCTAGGGTACGATACC+TGG | - | chr1_3:59441173-59441192 | Msa0129470:intron | 50.0% | |
| ! | TAACCCAGGTATCGTACCCT+AGG | + | chr1_3:59441180-59441199 | None:intergenic | 50.0% |
| ! | TTTTTGCGAGGCTCAGAACC+TGG | - | chr1_3:59441493-59441512 | Msa0129470:intron | 50.0% |
| GTGAGTAACCAACAGTCCAG+TGG | - | chr1_3:59442531-59442550 | Msa0129470:intron | 50.0% | |
| TTTCCCTTGGTTGCAGTGGT+GGG | + | chr1_3:59442776-59442795 | None:intergenic | 50.0% | |
| ATTTCCCTTGGTTGCAGTGG+TGG | + | chr1_3:59442777-59442796 | None:intergenic | 50.0% | |
| TTGTCAACTACTTCCAGGGG+CGG | + | chr1_3:59442879-59442898 | None:intergenic | 50.0% | |
| ATTGGGGGAGCAGGGTTATC+TGG | - | chr1_3:59440707-59440726 | Msa0129470:intron | 55.0% | |
| TGAATATGGTCTGGGGGAGC+TGG | - | chr1_3:59442565-59442584 | Msa0129470:intron | 55.0% | |
| !! | GGAGCTGGTTCGATTCCCAT+GGG | - | chr1_3:59442580-59442599 | Msa0129470:intron | 55.0% |
| TTCCCTTGGTTGCAGTGGTG+GGG | + | chr1_3:59442775-59442794 | None:intergenic | 55.0% | |
| TGTAGCACGTGTGCGACACC+CGG | + | chr1_3:59441105-59441124 | None:intergenic | 60.0% | |
| TGCGAGGCTCAGAACCTGGA+AGG | - | chr1_3:59441497-59441516 | Msa0129470:intron | 60.0% | |
| GCGAGGCTCAGAACCTGGAA+GGG | - | chr1_3:59441498-59441517 | Msa0129470:intron | 60.0% | |
| !! | GGGAGCTGGTTCGATTCCCA+TGG | - | chr1_3:59442579-59442598 | Msa0129470:intron | 60.0% |
| ACCCCCACCACTGCAACCAA+GGG | - | chr1_3:59442770-59442789 | Msa0129470:intron | 60.0% | |
| TCCCTTGGTTGCAGTGGTGG+GGG | + | chr1_3:59442774-59442793 | None:intergenic | 60.0% | |
| !! | AGCAATCTTGGGGGGTGCCA+TGG | - | chr1_3:59442830-59442849 | Msa0129470:CDS | 60.0% |
| ! | GGATCTCTTTGGAGACCCCC+AGG | + | chr1_3:59442858-59442877 | None:intergenic | 60.0% |
| TCTCCAAAGAGATCCGCCCC+TGG | - | chr1_3:59442863-59442882 | Msa0129470:intron | 60.0% | |
| CTTCCAGGGGCGGATCTCTT+TGG | + | chr1_3:59442869-59442888 | None:intergenic | 60.0% | |
| CACCCCCACCACTGCAACCA+AGG | - | chr1_3:59442769-59442788 | Msa0129470:intron | 65.0% | |
| TTGGAGACCCCCAGGTGCCA+TGG | + | chr1_3:59442850-59442869 | None:intergenic | 65.0% | |
| !! | TTGGGGGGTGCCATGGCACC+TGG | - | chr1_3:59442837-59442856 | Msa0129470:CDS | 70.0% |
| !! | TGGGGGGTGCCATGGCACCT+GGG | - | chr1_3:59442838-59442857 | Msa0129470:CDS | 70.0% |
| !! | GGGGGGTGCCATGGCACCTG+GGG | - | chr1_3:59442839-59442858 | Msa0129470:CDS | 75.0% |
| !! | GGGGGTGCCATGGCACCTGG+GGG | - | chr1_3:59442840-59442859 | Msa0129470:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59440232 | 59443928 | 59440232 | ID=Msa0129470;Name=Msa0129470 |
| chr1_3 | mRNA | 59440232 | 59443928 | 59440232 | ID=Msa0129470-mRNA-1;Parent=Msa0129470;Name=Msa0129470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=266|1|1|1|1|1|6|311|149 |
| chr1_3 | exon | 59440232 | 59440593 | 59440232 | ID=Msa0129470-mRNA-1:exon:19372;Parent=Msa0129470-mRNA-1 |
| chr1_3 | exon | 59440716 | 59440788 | 59440716 | ID=Msa0129470-mRNA-1:exon:19371;Parent=Msa0129470-mRNA-1 |
| chr1_3 | exon | 59442641 | 59442712 | 59442641 | ID=Msa0129470-mRNA-1:exon:19370;Parent=Msa0129470-mRNA-1 |
| chr1_3 | exon | 59442811 | 59442879 | 59442811 | ID=Msa0129470-mRNA-1:exon:19369;Parent=Msa0129470-mRNA-1 |
| chr1_3 | exon | 59443310 | 59443440 | 59443310 | ID=Msa0129470-mRNA-1:exon:19368;Parent=Msa0129470-mRNA-1 |
| chr1_3 | exon | 59443609 | 59443928 | 59443609 | ID=Msa0129470-mRNA-1:exon:19367;Parent=Msa0129470-mRNA-1 |
| chr1_3 | five_prime_UTR | 59443663 | 59443928 | 59443663 | ID=Msa0129470-mRNA-1:five_prime_utr;Parent=Msa0129470-mRNA-1 |
| chr1_3 | CDS | 59443609 | 59443662 | 59443609 | ID=Msa0129470-mRNA-1:cds;Parent=Msa0129470-mRNA-1 |
| chr1_3 | CDS | 59443310 | 59443440 | 59443310 | ID=Msa0129470-mRNA-1:cds;Parent=Msa0129470-mRNA-1 |
| chr1_3 | CDS | 59442811 | 59442879 | 59442811 | ID=Msa0129470-mRNA-1:cds;Parent=Msa0129470-mRNA-1 |
| chr1_3 | CDS | 59442641 | 59442712 | 59442641 | ID=Msa0129470-mRNA-1:cds;Parent=Msa0129470-mRNA-1 |
| chr1_3 | CDS | 59440716 | 59440788 | 59440716 | ID=Msa0129470-mRNA-1:cds;Parent=Msa0129470-mRNA-1 |
| chr1_3 | CDS | 59440543 | 59440593 | 59440543 | ID=Msa0129470-mRNA-1:cds;Parent=Msa0129470-mRNA-1 |
| chr1_3 | three_prime_UTR | 59440232 | 59440542 | 59440232 | ID=Msa0129470-mRNA-1:three_prime_utr;Parent=Msa0129470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
