Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135440 | KEH35080.1 | 98.731 | 394 | 5 | 0 | 1 | 394 | 141 | 534 | 0.0 | 799 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135440 | sp|Q8VWZ1|AADH1_PEA | 89.313 | 393 | 42 | 0 | 1 | 393 | 111 | 503 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135440 | A0A072VA63 | 98.731 | 394 | 5 | 0 | 1 | 394 | 141 | 534 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135440 | Msa0195580 | 0.810532 | 1.099958e-50 | -8.615850e-47 |
| Msa0135440 | Msa0419570 | 0.843415 | 1.421471e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135440 | MtrunA17_Chr3g0118081 | 98.731 | 394 | 5 | 0 | 1 | 394 | 141 | 534 | 0.0 | 799 |
| Msa0135440 | MtrunA17_Chr3g0118121 | 91.349 | 393 | 34 | 0 | 1 | 393 | 111 | 503 | 0.0 | 724 |
| Msa0135440 | MtrunA17_Chr4g0059521 | 82.952 | 393 | 67 | 0 | 1 | 393 | 111 | 503 | 0.0 | 668 |
| Msa0135440 | MtrunA17_Chr8g0390631 | 42.744 | 379 | 210 | 3 | 7 | 384 | 121 | 493 | 9.16e-106 | 320 |
| Msa0135440 | MtrunA17_Chr6g0485301 | 44.125 | 383 | 207 | 3 | 3 | 384 | 125 | 501 | 2.96e-105 | 319 |
| Msa0135440 | MtrunA17_Chr6g0485311 | 43.536 | 379 | 205 | 4 | 8 | 384 | 128 | 499 | 1.51e-102 | 312 |
| Msa0135440 | MtrunA17_Chr8g0365221 | 41.514 | 383 | 215 | 4 | 4 | 384 | 165 | 540 | 3.48e-101 | 310 |
| Msa0135440 | MtrunA17_Chr2g0310091 | 43.714 | 350 | 195 | 1 | 26 | 375 | 182 | 529 | 8.30e-100 | 306 |
| Msa0135440 | MtrunA17_Chr4g0059221 | 42.670 | 382 | 210 | 4 | 5 | 384 | 169 | 543 | 1.22e-99 | 306 |
| Msa0135440 | MtrunA17_Chr8g0390651 | 41.161 | 379 | 216 | 3 | 7 | 384 | 130 | 502 | 2.46e-98 | 301 |
| Msa0135440 | MtrunA17_Chr3g0117861 | 41.885 | 382 | 213 | 4 | 5 | 384 | 167 | 541 | 5.86e-98 | 302 |
| Msa0135440 | MtrunA17_Chr4g0074171 | 38.166 | 338 | 195 | 8 | 27 | 360 | 142 | 469 | 4.34e-57 | 194 |
| Msa0135440 | MtrunA17_Chr2g0294411 | 32.877 | 365 | 229 | 7 | 34 | 389 | 181 | 538 | 5.91e-55 | 191 |
| Msa0135440 | MtrunA17_Chr1g0149961 | 35.312 | 337 | 206 | 7 | 27 | 360 | 142 | 469 | 8.19e-55 | 188 |
| Msa0135440 | MtrunA17_Chr4g0049641 | 28.205 | 390 | 254 | 7 | 3 | 385 | 154 | 524 | 4.44e-42 | 155 |
| Msa0135440 | MtrunA17_Chr2g0279751 | 30.311 | 386 | 243 | 8 | 9 | 381 | 121 | 493 | 4.60e-42 | 154 |
| Msa0135440 | MtrunA17_Chr2g0300801 | 29.912 | 341 | 222 | 7 | 40 | 370 | 154 | 487 | 1.84e-41 | 152 |
| Msa0135440 | MtrunA17_Chr3g0124811 | 30.919 | 359 | 237 | 7 | 20 | 375 | 97 | 447 | 2.90e-40 | 149 |
| Msa0135440 | MtrunA17_Chr8g0372381 | 30.871 | 379 | 249 | 8 | 1 | 375 | 69 | 438 | 8.42e-40 | 147 |
| Msa0135440 | MtrunA17_Chr8g0384741 | 30.409 | 342 | 227 | 7 | 37 | 375 | 165 | 498 | 3.76e-36 | 138 |
| Msa0135440 | MtrunA17_Chr1g0159811 | 29.882 | 338 | 222 | 8 | 20 | 352 | 95 | 422 | 1.55e-35 | 136 |
| Msa0135440 | MtrunA17_Chr2g0328781 | 27.945 | 365 | 238 | 10 | 37 | 390 | 116 | 466 | 9.44e-35 | 134 |
| Msa0135440 | MtrunA17_Chr4g0032441 | 29.551 | 379 | 248 | 9 | 20 | 390 | 84 | 451 | 2.62e-27 | 113 |
| Msa0135440 | MtrunA17_Chr4g0060261 | 25.658 | 304 | 194 | 10 | 34 | 319 | 187 | 476 | 2.08e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135440 | AT1G74920.2 | 77.238 | 391 | 89 | 0 | 1 | 391 | 106 | 496 | 0.0 | 656 |
| Msa0135440 | AT1G74920.1 | 77.238 | 391 | 89 | 0 | 1 | 391 | 111 | 501 | 0.0 | 656 |
| Msa0135440 | AT3G48170.1 | 76.081 | 393 | 94 | 0 | 1 | 393 | 111 | 503 | 0.0 | 646 |
| Msa0135440 | AT3G24503.1 | 46.053 | 380 | 199 | 3 | 6 | 384 | 126 | 500 | 1.11e-117 | 352 |
| Msa0135440 | AT3G48000.1 | 43.008 | 379 | 207 | 4 | 8 | 384 | 166 | 537 | 5.39e-103 | 315 |
| Msa0135440 | AT1G23800.1 | 41.053 | 380 | 215 | 4 | 7 | 384 | 161 | 533 | 3.95e-96 | 297 |
| Msa0135440 | AT1G79440.1 | 42.183 | 339 | 194 | 2 | 37 | 375 | 184 | 520 | 1.38e-88 | 278 |
| Msa0135440 | AT3G66658.1 | 34.540 | 359 | 219 | 8 | 35 | 384 | 182 | 533 | 1.19e-57 | 197 |
| Msa0135440 | AT3G66658.2 | 34.540 | 359 | 219 | 8 | 35 | 384 | 182 | 533 | 2.39e-57 | 197 |
| Msa0135440 | AT2G24270.3 | 36.202 | 337 | 203 | 7 | 27 | 360 | 142 | 469 | 8.29e-56 | 191 |
| Msa0135440 | AT2G24270.1 | 36.202 | 337 | 203 | 7 | 27 | 360 | 142 | 469 | 8.29e-56 | 191 |
| Msa0135440 | AT2G24270.4 | 36.202 | 337 | 203 | 7 | 27 | 360 | 142 | 469 | 1.21e-55 | 191 |
| Msa0135440 | AT2G24270.2 | 36.202 | 337 | 203 | 7 | 27 | 360 | 182 | 509 | 1.65e-55 | 191 |
| Msa0135440 | AT1G23800.2 | 42.793 | 222 | 120 | 3 | 8 | 227 | 162 | 378 | 3.44e-51 | 177 |
| Msa0135440 | AT1G54100.2 | 30.155 | 388 | 253 | 8 | 4 | 382 | 120 | 498 | 5.23e-44 | 160 |
| Msa0135440 | AT1G54100.1 | 30.155 | 388 | 253 | 8 | 4 | 382 | 120 | 498 | 5.23e-44 | 160 |
| Msa0135440 | AT1G44170.3 | 29.640 | 361 | 239 | 7 | 20 | 375 | 28 | 378 | 4.58e-42 | 153 |
| Msa0135440 | AT1G44170.1 | 29.640 | 361 | 239 | 7 | 20 | 375 | 91 | 441 | 1.41e-41 | 153 |
| Msa0135440 | AT1G44170.2 | 29.640 | 361 | 239 | 7 | 20 | 375 | 91 | 441 | 1.41e-41 | 153 |
| Msa0135440 | AT2G14170.2 | 29.765 | 383 | 238 | 8 | 9 | 384 | 123 | 481 | 2.45e-40 | 150 |
| Msa0135440 | AT2G14170.1 | 29.765 | 383 | 238 | 8 | 9 | 384 | 232 | 590 | 2.37e-39 | 148 |
| Msa0135440 | AT2G14170.3 | 30.723 | 332 | 211 | 4 | 9 | 338 | 232 | 546 | 4.04e-38 | 145 |
| Msa0135440 | AT4G36250.1 | 29.885 | 348 | 230 | 9 | 34 | 375 | 101 | 440 | 7.99e-35 | 134 |
| Msa0135440 | AT4G34240.3 | 28.363 | 342 | 234 | 6 | 37 | 375 | 29 | 362 | 7.65e-29 | 116 |
| Msa0135440 | AT4G34240.4 | 28.363 | 342 | 234 | 6 | 37 | 375 | 156 | 489 | 2.29e-28 | 117 |
| Msa0135440 | AT4G34240.1 | 28.363 | 342 | 234 | 6 | 37 | 375 | 171 | 504 | 2.68e-28 | 116 |
| Msa0135440 | AT4G34240.2 | 33.000 | 200 | 129 | 4 | 37 | 235 | 171 | 366 | 1.85e-16 | 80.9 |
Find 112 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATATTGTCACTGGATT+AGG | 0.235962 | 1_3:+67105368 | Msa0135440:CDS |
| CTAAACTCTGGCATGGAATA+AGG | 0.259507 | 1_3:+67107982 | Msa0135440:three_prime_UTR |
| ATTATCTAGGGCGGTGTTAT+TGG | 0.270755 | 1_3:+67104911 | Msa0135440:intron |
| GGCATTAAACGTAGTGGTTT+TGG | 0.273926 | 1_3:+67107723 | Msa0135440:CDS |
| TTTCTGCAGGTTCTTCAATC+TGG | 0.307088 | 1_3:+67107648 | Msa0135440:intron |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 1_3:+67107303 | Msa0135440:CDS |
| ATATTTCACAGCTATGGCTT+GGG | 0.322049 | 1_3:+67107491 | Msa0135440:intron |
| CCATGAAGCTGGCGCTTCTT+TGG | 0.329631 | 1_3:+67105391 | Msa0135440:CDS |
| ATTTGATAGATTTCCTTTAC+TGG | 0.341689 | 1_3:+67105562 | Msa0135440:intron |
| TGTGAGAAAGGAAAAGAAAA+AGG | 0.342969 | 1_3:-67104725 | None:intergenic |
| CCAAAGAAGCGCCAGCTTCA+TGG | 0.354485 | 1_3:-67105391 | None:intergenic |
| GCACAACCAGCAGCCAGAGC+TGG | 0.367552 | 1_3:-67105178 | None:intergenic |
| ACCTGTGCTTCACTGACTAT+AGG | 0.370997 | 1_3:-67106460 | None:intergenic |
| TTACCAATTTAGGACTTGTT+TGG | 0.373089 | 1_3:+67105301 | Msa0135440:intron |
| ACCCCTTGGAAGAAGGTTGC+AGG | 0.381818 | 1_3:+67106431 | Msa0135440:CDS |
| ATCTCATCCTGATGTAGATA+TGG | 0.386512 | 1_3:+67105415 | Msa0135440:CDS |
| AGTTATTATAATCTTATGTT+GGG | 0.394667 | 1_3:+67108024 | Msa0135440:three_prime_UTR |
| TTGTGAATAGACTTGTGAAA+TGG | 0.395872 | 1_3:+67106386 | Msa0135440:CDS |
| AAGATGCGAGCGCCTATCTA+AGG | 0.397430 | 1_3:+67107541 | Msa0135440:CDS |
| TTCTTCAATCTGGAATTGTA+TGG | 0.398500 | 1_3:+67107658 | Msa0135440:CDS |
| TTAAACTTACATGCACAATA+AGG | 0.400421 | 1_3:-67106138 | None:intergenic |
| AATATTGAAGCCATCTGAAT+TGG | 0.406214 | 1_3:+67105204 | Msa0135440:CDS |
| GTTGCTGAATGGACCATCTA+TGG | 0.408946 | 1_3:+67106073 | Msa0135440:intron |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 1_3:+67105821 | Msa0135440:CDS |
| TTTACTGGTAGCTCTGCAAC+AGG | 0.422883 | 1_3:+67105577 | Msa0135440:CDS |
| ATTCTGTTATAACAGAGATA+TGG | 0.423370 | 1_3:-67108061 | None:intergenic |
| GAGGATGTTGACCTTGATAA+GGG | 0.426343 | 1_3:+67105822 | Msa0135440:CDS |
| TTCTCAGTTATCTGTGAGAA+AGG | 0.426630 | 1_3:-67104737 | None:intergenic |
| GTCACATCTGTTATGATGGT+TGG | 0.427065 | 1_3:-67107284 | None:intergenic |
| TTTAGGACTTGTTTGGAGTT+AGG | 0.428596 | 1_3:+67105308 | Msa0135440:intron |
| ATCAACTCACTGGGTGTCAT+TGG | 0.429178 | 1_3:-67107396 | None:intergenic |
| CTCTGGCATGGAATAAGGTT+TGG | 0.435891 | 1_3:+67107987 | Msa0135440:three_prime_UTR |
| AGCTCCTATATCTCTTCCTA+TGG | 0.435980 | 1_3:+67104985 | Msa0135440:CDS |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.437190 | 1_3:+67106436 | Msa0135440:CDS |
| ATCATTAAACAGTTGCTGAA+TGG | 0.437264 | 1_3:+67106062 | Msa0135440:intron |
| GTTAACTATGACATCTTTGA+AGG | 0.439189 | 1_3:-67107932 | None:intergenic |
| GATATTTCACAGCTATGGCT+TGG | 0.445240 | 1_3:+67107490 | Msa0135440:intron |
| TGGATCAATTGTGCTCAAAC+AGG | 0.445550 | 1_3:+67107678 | Msa0135440:CDS |
| ATTAACGCAACAACACCAAT+AGG | 0.448807 | 1_3:-67105037 | None:intergenic |
| AAGTTATTATAATCTTATGT+TGG | 0.449400 | 1_3:+67108023 | Msa0135440:three_prime_UTR |
| AAGGAAAATTGCTCCAGCTC+TGG | 0.456691 | 1_3:+67105165 | Msa0135440:CDS |
| CCTGTGCTTCACTGACTATA+GGG | 0.460263 | 1_3:-67106459 | None:intergenic |
| GTATCCATAGGAAGAGATAT+AGG | 0.466773 | 1_3:-67104989 | None:intergenic |
| ATTTCAGACCCCTTGGAAGA+AGG | 0.469929 | 1_3:+67106424 | Msa0135440:CDS |
| ATTGCTCCAGCTCTGGCTGC+TGG | 0.470070 | 1_3:+67105172 | Msa0135440:CDS |
| TGTATAGAAGCAGCCATAGA+TGG | 0.473389 | 1_3:-67106086 | None:intergenic |
| AGGCTTCGTTCGAGCTCCAT+GGG | 0.473533 | 1_3:+67107698 | Msa0135440:CDS |
| TATGGCTGCTTCTATACAAA+TGG | 0.474831 | 1_3:+67106091 | Msa0135440:CDS |
| TAGCCTGCAACCTTCTTCCA+AGG | 0.480512 | 1_3:-67106434 | None:intergenic |
| GGATTAGTCTCACCTTAGAT+AGG | 0.481249 | 1_3:-67107553 | None:intergenic |
| CCCTATAGTCAGTGAAGCAC+AGG | 0.481337 | 1_3:+67106459 | Msa0135440:CDS |
| GGTGTCTTAAATATTGTCAC+TGG | 0.482343 | 1_3:+67105362 | Msa0135440:CDS |
| TGTGAATAGACTTGTGAAAT+GGG | 0.492497 | 1_3:+67106387 | Msa0135440:CDS |
| TGCTGGACTTGCTGAAGGGT+TGG | 0.492687 | 1_3:+67104949 | Msa0135440:CDS |
| TGTTGCAGAGCTACCAGTAA+AGG | 0.493965 | 1_3:-67105575 | None:intergenic |
| TCGATGGCAGAATTTAAAGA+AGG | 0.503397 | 1_3:+67107247 | Msa0135440:intron |
| AAAACCACTGGATGAAGCAC+TGG | 0.505361 | 1_3:+67104799 | Msa0135440:five_prime_UTR |
| CATCAAAATTTCAGACCCCT+TGG | 0.510382 | 1_3:+67106417 | Msa0135440:CDS |
| CAGGCTTCGTTCGAGCTCCA+TGG | 0.512023 | 1_3:+67107697 | Msa0135440:CDS |
| TTTCGAACCATATCTACATC+AGG | 0.514618 | 1_3:-67105422 | None:intergenic |
| TATGTTCTCAAGGAGCCTAT+TGG | 0.514657 | 1_3:+67105022 | Msa0135440:CDS |
| TAGGAACTATCCTCTCTCAA+TGG | 0.514791 | 1_3:+67105138 | Msa0135440:intron |
| GCATGGAATAAGGTTTGGTG+TGG | 0.517574 | 1_3:+67107992 | Msa0135440:three_prime_UTR |
| AACATAAGATTATAATAACT+TGG | 0.519839 | 1_3:-67108021 | None:intergenic |
| GTACATATCTGATGAGCAGT+GGG | 0.523721 | 1_3:+67107895 | Msa0135440:CDS |
| TGAGTGTGAAGCAAGTTACT+AGG | 0.525857 | 1_3:+67107873 | Msa0135440:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 1_3:+67107742 | Msa0135440:CDS |
| AGCCTGCAACCTTCTTCCAA+GGG | 0.527999 | 1_3:-67106433 | None:intergenic |
| GGCGAAATATGCAGAGAAGT+TGG | 0.528758 | 1_3:+67105329 | Msa0135440:CDS |
| CTTCAAAAGCTATGTTCTCA+AGG | 0.533468 | 1_3:+67105012 | Msa0135440:CDS |
| GGTAGTCACATCTGTTATGA+TGG | 0.533599 | 1_3:-67107288 | None:intergenic |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 1_3:+67107492 | Msa0135440:intron |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 1_3:+67107900 | Msa0135440:CDS |
| CGATGGCAGAATTTAAAGAA+GGG | 0.538375 | 1_3:+67107248 | Msa0135440:intron |
| TTGACATCTAAACTCTGGCA+TGG | 0.540317 | 1_3:+67107975 | Msa0135440:three_prime_UTR |
| TACTATGCTGGACTTGCTGA+AGG | 0.544071 | 1_3:+67104944 | Msa0135440:CDS |
| TTGTTGCGTTAATTACTCCA+TGG | 0.544771 | 1_3:+67105047 | Msa0135440:CDS |
| AAACTTGAATCAATTGATTG+TGG | 0.547623 | 1_3:+67104776 | Msa0135440:five_prime_UTR |
| AATTGATTGTGGAAAACCAC+TGG | 0.554464 | 1_3:+67104787 | Msa0135440:five_prime_UTR |
| AGAGAAGTTGGCCTTCCTCC+CGG | 0.556168 | 1_3:+67105341 | Msa0135440:CDS |
| ACTGGATTAGGCCATGAAGC+TGG | 0.561019 | 1_3:+67105380 | Msa0135440:CDS |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 1_3:+67107117 | Msa0135440:CDS |
| AGTTGCAGCACAACTAATCA+AGG | 0.562112 | 1_3:+67105615 | Msa0135440:CDS |
| TTAACTATGACATCTTTGAA+GGG | 0.562539 | 1_3:-67107931 | None:intergenic |
| TTCGTTCGAGCTCCATGGGG+AGG | 0.569240 | 1_3:+67107702 | Msa0135440:CDS |
| AGGCACACCGACCCTTATCA+AGG | 0.570107 | 1_3:-67105833 | None:intergenic |
| TATTTAAGACACCGGGAGGA+AGG | 0.570198 | 1_3:-67105352 | None:intergenic |
| ATCCTCTCTCAATGGCGGCA+AGG | 0.570320 | 1_3:+67105146 | Msa0135440:CDS |
| TTCCTTGCCGCCATTGAGAG+AGG | 0.573066 | 1_3:-67105148 | None:intergenic |
| TAAATTTGACATCTAAACTC+TGG | 0.574840 | 1_3:+67107970 | Msa0135440:three_prime_UTR |
| AAACCACTGGATGAAGCACT+GGG | 0.579432 | 1_3:+67104800 | Msa0135440:five_prime_UTR |
| GATGCAAATTTGGAGAGAAG+AGG | 0.583417 | 1_3:+67107313 | Msa0135440:CDS |
| TAACTATGACATCTTTGAAG+GGG | 0.596331 | 1_3:-67107930 | None:intergenic |
| TACACAGATGCCAATTCAGA+TGG | 0.601708 | 1_3:-67105214 | None:intergenic |
| GCCTGCAACCTTCTTCCAAG+GGG | 0.615474 | 1_3:-67106432 | None:intergenic |
| AGTGACAATATTTAAGACAC+CGG | 0.617571 | 1_3:-67105360 | None:intergenic |
| CTACGTTTAATGCCTCCCCA+TGG | 0.624319 | 1_3:-67107714 | None:intergenic |
| GGTACATATCTGATGAGCAG+TGG | 0.625206 | 1_3:+67107894 | Msa0135440:CDS |
| AACTGGTGGATGTCGACCAG+AGG | 0.630389 | 1_3:+67107152 | Msa0135440:CDS |
| ACCACTGGATGAAGCACTGG+GGG | 0.636518 | 1_3:+67104802 | Msa0135440:five_prime_UTR |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 1_3:+67107717 | Msa0135440:CDS |
| CATGGAATAAGGTTTGGTGT+GGG | 0.651345 | 1_3:+67107993 | Msa0135440:three_prime_UTR |
| TTCTCTCCAAATTTGCATCG+AGG | 0.657536 | 1_3:-67107309 | None:intergenic |
| GTGACAATATTTAAGACACC+GGG | 0.665124 | 1_3:-67105359 | None:intergenic |
| ACTATGCTGGACTTGCTGAA+GGG | 0.667267 | 1_3:+67104945 | Msa0135440:CDS |
| GAACTATCCTCTCTCAATGG+CGG | 0.667430 | 1_3:+67105141 | Msa0135440:CDS |
| TTACTGGTAGCTCTGCAACA+GGG | 0.699994 | 1_3:+67105578 | Msa0135440:CDS |
| ACAATATTTAAGACACCGGG+AGG | 0.702063 | 1_3:-67105356 | None:intergenic |
| GGCTTCGTTCGAGCTCCATG+GGG | 0.728743 | 1_3:+67107699 | Msa0135440:CDS |
| TGTGAAAACATTTAGCACTG+AGG | 0.731236 | 1_3:+67107355 | Msa0135440:CDS |
| AACCACTGGATGAAGCACTG+GGG | 0.731676 | 1_3:+67104801 | Msa0135440:five_prime_UTR |
| TACATATCTGATGAGCAGTG+GGG | 0.756462 | 1_3:+67107896 | Msa0135440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAATTGTTTTTTTATTTT+AGG | + | chr1_3:67105119-67105138 | Msa0135440:intron | 10.0% |
| !!! | GTTTTTATATGAAAATATAT+CGG | - | chr1_3:67107577-67107596 | None:intergenic | 10.0% |
| !!! | ATTTAATATTGTTTTGCATT+CGG | - | chr1_3:67105737-67105756 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTCAGCATAAA+TGG | + | chr1_3:67106241-67106260 | Msa0135440:intron | 15.0% |
| !!! | TTTTTTTTTTCAGCATAAAT+GGG | + | chr1_3:67106242-67106261 | Msa0135440:intron | 15.0% |
| !! | AACATAAGATTATAATAACT+TGG | - | chr1_3:67108024-67108043 | None:intergenic | 15.0% |
| !! | AAGTTATTATAATCTTATGT+TGG | + | chr1_3:67108023-67108042 | Msa0135440:three_prime_UTR | 15.0% |
| !! | AGTTATTATAATCTTATGTT+GGG | + | chr1_3:67108024-67108043 | Msa0135440:three_prime_UTR | 15.0% |
| !! | ATTACTGAAAAAGAATTCAT+AGG | - | chr1_3:67105105-67105124 | None:intergenic | 20.0% |
| !!! | TTCTTTTTGTTTACCAATTT+AGG | + | chr1_3:67105291-67105310 | Msa0135440:intron | 20.0% |
| !! | TTAGTGAAATCAAAACTATA+AGG | + | chr1_3:67105464-67105483 | Msa0135440:intron | 20.0% |
| !! | CAATGCATGAAATTAAAATA+TGG | - | chr1_3:67105926-67105945 | None:intergenic | 20.0% |
| !!! | TATTTTAATTTCATGCATTG+TGG | + | chr1_3:67105926-67105945 | Msa0135440:intron | 20.0% |
| !!! | ATTATAGTCGAGTAAATTTT+CGG | + | chr1_3:67105969-67105988 | Msa0135440:intron | 20.0% |
| !!! | AAAATTGATCAACACTTTTA+TGG | + | chr1_3:67106338-67106357 | Msa0135440:intron | 20.0% |
| !!! | AGTATTGAATTTTATCTCAA+CGG | + | chr1_3:67107104-67107123 | Msa0135440:CDS | 20.0% |
| !!! | TTGTAGATTTTAGAAAACAA+GGG | - | chr1_3:67107773-67107792 | None:intergenic | 20.0% |
| !!! | TTTGTAGATTTTAGAAAACA+AGG | - | chr1_3:67107774-67107793 | None:intergenic | 20.0% |
| ! | AAACTTGAATCAATTGATTG+TGG | + | chr1_3:67104776-67104795 | Msa0135440:five_prime_UTR | 25.0% |
| ! | AAAAAACAGATATCATACCA+TGG | - | chr1_3:67105067-67105086 | None:intergenic | 25.0% |
| ! | TTAAATATTGTCACTGGATT+AGG | + | chr1_3:67105368-67105387 | Msa0135440:CDS | 25.0% |
| ! | AAAGGAAATCTATCAAATAG+CGG | - | chr1_3:67105560-67105579 | None:intergenic | 25.0% |
| ! | ATTTGATAGATTTCCTTTAC+TGG | + | chr1_3:67105562-67105581 | Msa0135440:intron | 25.0% |
| ! | CAAACTAGACATATTTGAAA+AGG | - | chr1_3:67105856-67105875 | None:intergenic | 25.0% |
| !! | TTTCAAATATGTCTAGTTTG+TGG | + | chr1_3:67105856-67105875 | Msa0135440:intron | 25.0% |
| !!! | AATGTTTTGGTTAATGCAAT+AGG | - | chr1_3:67106004-67106023 | None:intergenic | 25.0% |
| ! | ATAAATCATCAACCGTATAT+GGG | - | chr1_3:67106029-67106048 | None:intergenic | 25.0% |
| ! | AATAAATCATCAACCGTATA+TGG | - | chr1_3:67106030-67106049 | None:intergenic | 25.0% |
| ! | TTAAACTTACATGCACAATA+AGG | - | chr1_3:67106141-67106160 | None:intergenic | 25.0% |
| !!! | AATTTTTTATCCAAAGCCAA+CGG | - | chr1_3:67106324-67106343 | None:intergenic | 25.0% |
| !!! | GTCTGAAATTTTGATGTTTT+TGG | - | chr1_3:67106413-67106432 | None:intergenic | 25.0% |
| !! | TATGTTTACATTTTGGACAA+TGG | - | chr1_3:67106750-67106769 | None:intergenic | 25.0% |
| ! | TTGTCCAAAATGTAAACATA+CGG | + | chr1_3:67106750-67106769 | Msa0135440:intron | 25.0% |
| ! | TAATATGTCTTCAAATTCGA+TGG | + | chr1_3:67107231-67107250 | Msa0135440:intron | 25.0% |
| ! | TTCGATTATTACTAACTGAA+TGG | + | chr1_3:67107607-67107626 | Msa0135440:intron | 25.0% |
| !!! | ACTTTATATTTGTTTTCTGC+AGG | + | chr1_3:67107635-67107654 | Msa0135440:intron | 25.0% |
| !!! | TTATTGTTGTTTTTCCATTC+AGG | + | chr1_3:67107834-67107853 | Msa0135440:intron | 25.0% |
| !!! | TATTGTTGTTTTTCCATTCA+GGG | + | chr1_3:67107835-67107854 | Msa0135440:intron | 25.0% |
| ! | TTAACTATGACATCTTTGAA+GGG | - | chr1_3:67107934-67107953 | None:intergenic | 25.0% |
| ! | TAAATTTGACATCTAAACTC+TGG | + | chr1_3:67107970-67107989 | Msa0135440:three_prime_UTR | 25.0% |
| ! | ATTCTGTTATAACAGAGATA+TGG | - | chr1_3:67108064-67108083 | None:intergenic | 25.0% |
| AGGAAAAGAAAAAGGATAAC+TGG | - | chr1_3:67104720-67104739 | None:intergenic | 30.0% | |
| TGTGAGAAAGGAAAAGAAAA+AGG | - | chr1_3:67104728-67104747 | None:intergenic | 30.0% | |
| ACTGAGAAAAAGAATGAACT+AGG | + | chr1_3:67104752-67104771 | Msa0135440:five_prime_UTR | 30.0% | |
| !!! | TGTTGCATTTTTTGCTTACT+TGG | + | chr1_3:67104869-67104888 | Msa0135440:intron | 30.0% |
| !!! | GTTGCATTTTTTGCTTACTT+GGG | + | chr1_3:67104870-67104889 | Msa0135440:intron | 30.0% |
| ! | TTGTGGTTTGATGATTATCT+AGG | + | chr1_3:67104898-67104917 | Msa0135440:intron | 30.0% |
| ! | TGTGGTTTGATGATTATCTA+GGG | + | chr1_3:67104899-67104918 | Msa0135440:intron | 30.0% |
| AATATTGAAGCCATCTGAAT+TGG | + | chr1_3:67105204-67105223 | Msa0135440:CDS | 30.0% | |
| ! | TTACCAATTTAGGACTTGTT+TGG | + | chr1_3:67105301-67105320 | Msa0135440:intron | 30.0% |
| ! | AGTGACAATATTTAAGACAC+CGG | - | chr1_3:67105363-67105382 | None:intergenic | 30.0% |
| AAGGAAATCTATCAAATAGC+GGG | - | chr1_3:67105559-67105578 | None:intergenic | 30.0% | |
| CCATGCGAAACAAATAAAAA+TGG | - | chr1_3:67105689-67105708 | None:intergenic | 30.0% | |
| !! | CCATTTTTATTTGTTTCGCA+TGG | + | chr1_3:67105686-67105705 | Msa0135440:intron | 30.0% |
| CATCCTCAAAAACAAGTATT+GGG | - | chr1_3:67105809-67105828 | None:intergenic | 30.0% | |
| ACATCCTCAAAAACAAGTAT+TGG | - | chr1_3:67105810-67105829 | None:intergenic | 30.0% | |
| ! | ATCACTTATCGTTTGCATTT+TGG | + | chr1_3:67105880-67105899 | Msa0135440:intron | 30.0% |
| ACTCGACTATAATGTATGAT+GGG | - | chr1_3:67105962-67105981 | None:intergenic | 30.0% | |
| TACTCGACTATAATGTATGA+TGG | - | chr1_3:67105963-67105982 | None:intergenic | 30.0% | |
| ! | TTGGTTAATGCAATAGGTTT+TGG | - | chr1_3:67105998-67106017 | None:intergenic | 30.0% |
| ! | CCAAAACATTTTCCCATATA+CGG | + | chr1_3:67106014-67106033 | Msa0135440:intron | 30.0% |
| ATCATTAAACAGTTGCTGAA+TGG | + | chr1_3:67106062-67106081 | Msa0135440:intron | 30.0% | |
| GCATGAACATGTATTATTGA+TGG | - | chr1_3:67106187-67106206 | None:intergenic | 30.0% | |
| TGTTAGATTTCCTTACATTG+TGG | + | chr1_3:67106267-67106286 | Msa0135440:intron | 30.0% | |
| ! | ATCAACACTTTTATGGTTTC+AGG | + | chr1_3:67106345-67106364 | Msa0135440:intron | 30.0% |
| TTGTGAATAGACTTGTGAAA+TGG | + | chr1_3:67106386-67106405 | Msa0135440:CDS | 30.0% | |
| TGTGAATAGACTTGTGAAAT+GGG | + | chr1_3:67106387-67106406 | Msa0135440:CDS | 30.0% | |
| !!! | GTGGCTTTAGACATAATTTT+AGG | + | chr1_3:67106512-67106531 | Msa0135440:intron | 30.0% |
| ! | TAGGTTGAAGACATTATTTG+CGG | + | chr1_3:67106531-67106550 | Msa0135440:intron | 30.0% |
| ACATTTCTACTTGCAAAATG+AGG | + | chr1_3:67106612-67106631 | Msa0135440:intron | 30.0% | |
| CATTTCTACTTGCAAAATGA+GGG | + | chr1_3:67106613-67106632 | Msa0135440:intron | 30.0% | |
| AACAAACACAAGACAAATAC+AGG | - | chr1_3:67106717-67106736 | None:intergenic | 30.0% | |
| ! | ACTACCGTATGTTTACATTT+TGG | - | chr1_3:67106757-67106776 | None:intergenic | 30.0% |
| !! | ATTTAGCTTTCAACCCATTT+GGG | + | chr1_3:67106847-67106866 | Msa0135440:intron | 30.0% |
| TCTCTCATGTCAATTTAAGT+GGG | + | chr1_3:67106935-67106954 | Msa0135440:intron | 30.0% | |
| !! | ACATGATTTAGCTTTCTATC+TGG | + | chr1_3:67106981-67107000 | Msa0135440:intron | 30.0% |
| !! | CATGATTTAGCTTTCTATCT+GGG | + | chr1_3:67106982-67107001 | Msa0135440:intron | 30.0% |
| AACTTGATATTTCACAGCTA+TGG | + | chr1_3:67107485-67107504 | Msa0135440:intron | 30.0% | |
| ! | TTCTTCAATCTGGAATTGTA+TGG | + | chr1_3:67107658-67107677 | Msa0135440:CDS | 30.0% |
| AAATTCAGACTCTAATTCTC+AGG | - | chr1_3:67107814-67107833 | None:intergenic | 30.0% | |
| !!! | ATTGTTGTTTTTCCATTCAG+GGG | + | chr1_3:67107836-67107855 | Msa0135440:intron | 30.0% |
| ! | TAACTATGACATCTTTGAAG+GGG | - | chr1_3:67107933-67107952 | None:intergenic | 30.0% |
| GTTAACTATGACATCTTTGA+AGG | - | chr1_3:67107935-67107954 | None:intergenic | 30.0% | |
| AAGAAAAAGGATAACTGGTC+AGG | - | chr1_3:67104715-67104734 | None:intergenic | 35.0% | |
| TTCTCAGTTATCTGTGAGAA+AGG | - | chr1_3:67104740-67104759 | None:intergenic | 35.0% | |
| AATTGATTGTGGAAAACCAC+TGG | + | chr1_3:67104787-67104806 | Msa0135440:five_prime_UTR | 35.0% | |
| GATAATCATCAAACCACAAC+AGG | - | chr1_3:67104897-67104916 | None:intergenic | 35.0% | |
| GTATCCATAGGAAGAGATAT+AGG | - | chr1_3:67104992-67105011 | None:intergenic | 35.0% | |
| !!! | TAGCTTTTGAAGGTATCCAT+AGG | - | chr1_3:67105004-67105023 | None:intergenic | 35.0% |
| ! | CTTGAGAACATAGCTTTTGA+AGG | - | chr1_3:67105014-67105033 | None:intergenic | 35.0% |
| CTTCAAAAGCTATGTTCTCA+AGG | + | chr1_3:67105012-67105031 | Msa0135440:CDS | 35.0% | |
| ATTAACGCAACAACACCAAT+AGG | - | chr1_3:67105040-67105059 | None:intergenic | 35.0% | |
| TTGTTGCGTTAATTACTCCA+TGG | + | chr1_3:67105047-67105066 | Msa0135440:CDS | 35.0% | |
| ACTCCAAACAAGTCCTAAAT+TGG | - | chr1_3:67105307-67105326 | None:intergenic | 35.0% | |
| ! | TTTAGGACTTGTTTGGAGTT+AGG | + | chr1_3:67105308-67105327 | Msa0135440:intron | 35.0% |
| ! | GTGACAATATTTAAGACACC+GGG | - | chr1_3:67105362-67105381 | None:intergenic | 35.0% |
| GGTGTCTTAAATATTGTCAC+TGG | + | chr1_3:67105362-67105381 | Msa0135440:CDS | 35.0% | |
| ATCTCATCCTGATGTAGATA+TGG | + | chr1_3:67105415-67105434 | Msa0135440:CDS | 35.0% | |
| TTTCGAACCATATCTACATC+AGG | - | chr1_3:67105425-67105444 | None:intergenic | 35.0% | |
| ! | CCGTATATGGGAAAATGTTT+TGG | - | chr1_3:67106017-67106036 | None:intergenic | 35.0% |
| TATGGCTGCTTCTATACAAA+TGG | + | chr1_3:67106091-67106110 | Msa0135440:CDS | 35.0% | |
| CAAAACTCTACCACAATGTA+AGG | - | chr1_3:67106280-67106299 | None:intergenic | 35.0% | |
| !! | TTTGCTGCTTATCACTTTTG+TGG | + | chr1_3:67106493-67106512 | Msa0135440:intron | 35.0% |
| ! | AACTAAAGCAGTTGATTTCC+TGG | - | chr1_3:67106569-67106588 | None:intergenic | 35.0% |
| !! | CATGTTAGCAGTTGATTTTC+CGG | - | chr1_3:67106689-67106708 | None:intergenic | 35.0% |
| !! | GATTTAGCTTTCAACCCATT+TGG | + | chr1_3:67106846-67106865 | Msa0135440:intron | 35.0% |
| CTCTCTCATGTCAATTTAAG+TGG | + | chr1_3:67106934-67106953 | Msa0135440:intron | 35.0% | |
| !! | GAAGGTGCAACAATTTTAAC+TGG | + | chr1_3:67107135-67107154 | Msa0135440:CDS | 35.0% |
| AAACAGATACACATGCTCAA+GGG | - | chr1_3:67107190-67107209 | None:intergenic | 35.0% | |
| AAAACAGATACACATGCTCA+AGG | - | chr1_3:67107191-67107210 | None:intergenic | 35.0% | |
| TCGATGGCAGAATTTAAAGA+AGG | + | chr1_3:67107247-67107266 | Msa0135440:intron | 35.0% | |
| CGATGGCAGAATTTAAAGAA+GGG | + | chr1_3:67107248-67107267 | Msa0135440:intron | 35.0% | |
| ! | ATTTGGAGAGAAGAGGTTTT+TGG | + | chr1_3:67107320-67107339 | Msa0135440:CDS | 35.0% |
| !! | AATGTTTTCACAGAGAGTAC+AGG | - | chr1_3:67107347-67107366 | None:intergenic | 35.0% |
| TGTGAAAACATTTAGCACTG+AGG | + | chr1_3:67107355-67107374 | Msa0135440:CDS | 35.0% | |
| !!! | ACCAGTTTTTTCTTGACTTG+TGG | + | chr1_3:67107444-67107463 | Msa0135440:intron | 35.0% |
| TCCACAAGTCAAGAAAAAAC+TGG | - | chr1_3:67107448-67107467 | None:intergenic | 35.0% | |
| ATATTTCACAGCTATGGCTT+GGG | + | chr1_3:67107491-67107510 | Msa0135440:intron | 35.0% | |
| TAATTATCAAGTCCCCTGAA+TGG | - | chr1_3:67107851-67107870 | None:intergenic | 35.0% | |
| ! | GGTTTGATGATTATCTAGGG+CGG | + | chr1_3:67104902-67104921 | Msa0135440:intron | 40.0% |
| !! | ATTATCTAGGGCGGTGTTAT+TGG | + | chr1_3:67104911-67104930 | Msa0135440:intron | 40.0% |
| !!! | GGTTGTTTTGAGTACTATGC+TGG | + | chr1_3:67104932-67104951 | Msa0135440:CDS | 40.0% |
| AGCTCCTATATCTCTTCCTA+TGG | + | chr1_3:67104985-67105004 | Msa0135440:CDS | 40.0% | |
| TATGTTCTCAAGGAGCCTAT+TGG | + | chr1_3:67105022-67105041 | Msa0135440:CDS | 40.0% | |
| TAGGAACTATCCTCTCTCAA+TGG | + | chr1_3:67105138-67105157 | Msa0135440:intron | 40.0% | |
| TACACAGATGCCAATTCAGA+TGG | - | chr1_3:67105217-67105236 | None:intergenic | 40.0% | |
| ! | ACAATATTTAAGACACCGGG+AGG | - | chr1_3:67105359-67105378 | None:intergenic | 40.0% |
| AGTTGCAGCACAACTAATCA+AGG | + | chr1_3:67105615-67105634 | Msa0135440:CDS | 40.0% | |
| !!! | GAGCCCAATACTTGTTTTTG+AGG | + | chr1_3:67105803-67105822 | Msa0135440:CDS | 40.0% |
| TGAGGATGTTGACCTTGATA+AGG | + | chr1_3:67105821-67105840 | Msa0135440:CDS | 40.0% | |
| GAGGATGTTGACCTTGATAA+GGG | + | chr1_3:67105822-67105841 | Msa0135440:CDS | 40.0% | |
| ATGTTGACCTTGATAAGGGT+CGG | + | chr1_3:67105826-67105845 | Msa0135440:intron | 40.0% | |
| TGTATAGAAGCAGCCATAGA+TGG | - | chr1_3:67106089-67106108 | None:intergenic | 40.0% | |
| AAACCTCATAGAGATTCCGT+TGG | + | chr1_3:67106305-67106324 | Msa0135440:intron | 40.0% | |
| CATCAAAATTTCAGACCCCT+TGG | + | chr1_3:67106417-67106436 | Msa0135440:CDS | 40.0% | |
| CGGAAAATCAACTGCTAACA+TGG | + | chr1_3:67106687-67106706 | Msa0135440:intron | 40.0% | |
| TCAAAGTCGAATGCATTCTG+CGG | + | chr1_3:67106796-67106815 | Msa0135440:intron | 40.0% | |
| !!! | GGTGCAACAATTTTAACTGG+TGG | + | chr1_3:67107138-67107157 | Msa0135440:CDS | 40.0% |
| AGGGTATATACTCATACCTC+TGG | - | chr1_3:67107171-67107190 | None:intergenic | 40.0% | |
| GTCACATCTGTTATGATGGT+TGG | - | chr1_3:67107287-67107306 | None:intergenic | 40.0% | |
| GGTAGTCACATCTGTTATGA+TGG | - | chr1_3:67107291-67107310 | None:intergenic | 40.0% | |
| TGACTACCTCGATGCAAATT+TGG | + | chr1_3:67107303-67107322 | Msa0135440:CDS | 40.0% | |
| TTCTCTCCAAATTTGCATCG+AGG | - | chr1_3:67107312-67107331 | None:intergenic | 40.0% | |
| GATGCAAATTTGGAGAGAAG+AGG | + | chr1_3:67107313-67107332 | Msa0135440:CDS | 40.0% | |
| GATCAGTTCATCAACTCACT+GGG | - | chr1_3:67107408-67107427 | None:intergenic | 40.0% | |
| TGATCAGTTCATCAACTCAC+TGG | - | chr1_3:67107409-67107428 | None:intergenic | 40.0% | |
| GATATTTCACAGCTATGGCT+TGG | + | chr1_3:67107490-67107509 | Msa0135440:intron | 40.0% | |
| TATTTCACAGCTATGGCTTG+GGG | + | chr1_3:67107492-67107511 | Msa0135440:intron | 40.0% | |
| !! | GGATTAGTCTCACCTTAGAT+AGG | - | chr1_3:67107556-67107575 | None:intergenic | 40.0% |
| TTTCTGCAGGTTCTTCAATC+TGG | + | chr1_3:67107648-67107667 | Msa0135440:intron | 40.0% | |
| TGGATCAATTGTGCTCAAAC+AGG | + | chr1_3:67107678-67107697 | Msa0135440:CDS | 40.0% | |
| ! | GGCATTAAACGTAGTGGTTT+TGG | + | chr1_3:67107723-67107742 | Msa0135440:CDS | 40.0% |
| TGAGTGTGAAGCAAGTTACT+AGG | + | chr1_3:67107873-67107892 | Msa0135440:CDS | 40.0% | |
| GTACATATCTGATGAGCAGT+GGG | + | chr1_3:67107895-67107914 | Msa0135440:CDS | 40.0% | |
| TACATATCTGATGAGCAGTG+GGG | + | chr1_3:67107896-67107915 | Msa0135440:CDS | 40.0% | |
| TTGACATCTAAACTCTGGCA+TGG | + | chr1_3:67107975-67107994 | Msa0135440:three_prime_UTR | 40.0% | |
| CTAAACTCTGGCATGGAATA+AGG | + | chr1_3:67107982-67108001 | Msa0135440:three_prime_UTR | 40.0% | |
| !! | CATGGAATAAGGTTTGGTGT+GGG | + | chr1_3:67107993-67108012 | Msa0135440:three_prime_UTR | 40.0% |
| AAAACCACTGGATGAAGCAC+TGG | + | chr1_3:67104799-67104818 | Msa0135440:five_prime_UTR | 45.0% | |
| ! | AAACCACTGGATGAAGCACT+GGG | + | chr1_3:67104800-67104819 | Msa0135440:five_prime_UTR | 45.0% |
| !! | TACTATGCTGGACTTGCTGA+AGG | + | chr1_3:67104944-67104963 | Msa0135440:CDS | 45.0% |
| !! | ACTATGCTGGACTTGCTGAA+GGG | + | chr1_3:67104945-67104964 | Msa0135440:CDS | 45.0% |
| GAACTATCCTCTCTCAATGG+CGG | + | chr1_3:67105141-67105160 | Msa0135440:CDS | 45.0% | |
| AAGGAAAATTGCTCCAGCTC+TGG | + | chr1_3:67105165-67105184 | Msa0135440:CDS | 45.0% | |
| GGCGAAATATGCAGAGAAGT+TGG | + | chr1_3:67105329-67105348 | Msa0135440:CDS | 45.0% | |
| ! | TATTTAAGACACCGGGAGGA+AGG | - | chr1_3:67105355-67105374 | None:intergenic | 45.0% |
| !! | CTATCAAATAGCGGGCACAA+TGG | - | chr1_3:67105551-67105570 | None:intergenic | 45.0% |
| TGTTGCAGAGCTACCAGTAA+AGG | - | chr1_3:67105578-67105597 | None:intergenic | 45.0% | |
| ! | TTTACTGGTAGCTCTGCAAC+AGG | + | chr1_3:67105577-67105596 | Msa0135440:CDS | 45.0% |
| ! | TTACTGGTAGCTCTGCAACA+GGG | + | chr1_3:67105578-67105597 | Msa0135440:CDS | 45.0% |
| !!! | CAGCCTGTTTTTCTAGAGCT+CGG | + | chr1_3:67105774-67105793 | Msa0135440:intron | 45.0% |
| GTTGCTGAATGGACCATCTA+TGG | + | chr1_3:67106073-67106092 | Msa0135440:intron | 45.0% | |
| AAGCCAACGGAATCTCTATG+AGG | - | chr1_3:67106311-67106330 | None:intergenic | 45.0% | |
| !! | CATAGAGATTCCGTTGGCTT+TGG | + | chr1_3:67106311-67106330 | Msa0135440:intron | 45.0% |
| ATTTCAGACCCCTTGGAAGA+AGG | + | chr1_3:67106424-67106443 | Msa0135440:CDS | 45.0% | |
| ! | CCTGTGCTTCACTGACTATA+GGG | - | chr1_3:67106462-67106481 | None:intergenic | 45.0% |
| ! | ACCTGTGCTTCACTGACTAT+AGG | - | chr1_3:67106463-67106482 | None:intergenic | 45.0% |
| ! | TTGCGGTTGATACGTAATCC+AGG | + | chr1_3:67106548-67106567 | Msa0135440:intron | 45.0% |
| CATGCAGTTGTTACGTAGTC+CGG | + | chr1_3:67106667-67106686 | Msa0135440:intron | 45.0% | |
| AGCTTTCAACCCATTTGGGT+TGG | + | chr1_3:67106851-67106870 | Msa0135440:intron | 45.0% | |
| ATCTCAACGGCTAAGAGTGA+AGG | + | chr1_3:67107117-67107136 | Msa0135440:CDS | 45.0% | |
| ! | ATCAACTCACTGGGTGTCAT+TGG | - | chr1_3:67107399-67107418 | None:intergenic | 45.0% |
| !!! | AGTGGTTTTGGTCGCGAATT+AGG | + | chr1_3:67107735-67107754 | Msa0135440:CDS | 45.0% |
| TTGGTCGCGAATTAGGAGAA+TGG | + | chr1_3:67107742-67107761 | Msa0135440:CDS | 45.0% | |
| GGTACATATCTGATGAGCAG+TGG | + | chr1_3:67107894-67107913 | Msa0135440:CDS | 45.0% | |
| CTCTGGCATGGAATAAGGTT+TGG | + | chr1_3:67107987-67108006 | Msa0135440:three_prime_UTR | 45.0% | |
| !! | GCATGGAATAAGGTTTGGTG+TGG | + | chr1_3:67107992-67108011 | Msa0135440:three_prime_UTR | 45.0% |
| !! | AACCACTGGATGAAGCACTG+GGG | + | chr1_3:67104801-67104820 | Msa0135440:five_prime_UTR | 50.0% |
| TGCTTACTTGGGACCTGTTG+TGG | + | chr1_3:67104881-67104900 | Msa0135440:intron | 50.0% | |
| ! | ACTGGATTAGGCCATGAAGC+TGG | + | chr1_3:67105380-67105399 | Msa0135440:CDS | 50.0% |
| !! | CCACCGAGCTCTAGAAAAAC+AGG | - | chr1_3:67105780-67105799 | None:intergenic | 50.0% |
| !!! | CCTGTTTTTCTAGAGCTCGG+TGG | + | chr1_3:67105777-67105796 | Msa0135440:CDS | 50.0% |
| AGCCTGCAACCTTCTTCCAA+GGG | - | chr1_3:67106436-67106455 | None:intergenic | 50.0% | |
| TAGCCTGCAACCTTCTTCCA+AGG | - | chr1_3:67106437-67106456 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr1_3:67106436-67106455 | Msa0135440:CDS | 50.0% | |
| CCCTATAGTCAGTGAAGCAC+AGG | + | chr1_3:67106459-67106478 | Msa0135440:CDS | 50.0% | |
| ACCACTAGGCCAACCCAAAT+GGG | - | chr1_3:67106863-67106882 | None:intergenic | 50.0% | |
| TACCACTAGGCCAACCCAAA+TGG | - | chr1_3:67106864-67106883 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr1_3:67106865-67106884 | Msa0135440:intron | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | + | chr1_3:67106870-67106889 | Msa0135440:intron | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | + | chr1_3:67106871-67106890 | Msa0135440:intron | 50.0% |
| GAATCGAACCTGAGACCTCA+AGG | - | chr1_3:67106915-67106934 | None:intergenic | 50.0% | |
| AAGATGCGAGCGCCTATCTA+AGG | + | chr1_3:67107541-67107560 | Msa0135440:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | - | chr1_3:67107717-67107736 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+TGG | + | chr1_3:67107717-67107736 | Msa0135440:CDS | 50.0% |
| !! | ACCACTGGATGAAGCACTGG+GGG | + | chr1_3:67104802-67104821 | Msa0135440:five_prime_UTR | 55.0% |
| !! | TGCTGGACTTGCTGAAGGGT+TGG | + | chr1_3:67104949-67104968 | Msa0135440:CDS | 55.0% |
| ATCCTCTCTCAATGGCGGCA+AGG | + | chr1_3:67105146-67105165 | Msa0135440:CDS | 55.0% | |
| TTCCTTGCCGCCATTGAGAG+AGG | - | chr1_3:67105151-67105170 | None:intergenic | 55.0% | |
| !! | AGAGAAGTTGGCCTTCCTCC+CGG | + | chr1_3:67105341-67105360 | Msa0135440:CDS | 55.0% |
| !! | CCAAAGAAGCGCCAGCTTCA+TGG | - | chr1_3:67105394-67105413 | None:intergenic | 55.0% |
| CCATGAAGCTGGCGCTTCTT+TGG | + | chr1_3:67105391-67105410 | Msa0135440:CDS | 55.0% | |
| AGGCACACCGACCCTTATCA+AGG | - | chr1_3:67105836-67105855 | None:intergenic | 55.0% | |
| ACCCCTTGGAAGAAGGTTGC+AGG | + | chr1_3:67106431-67106450 | Msa0135440:CDS | 55.0% | |
| GCCTGCAACCTTCTTCCAAG+GGG | - | chr1_3:67106435-67106454 | None:intergenic | 55.0% | |
| !! | ACCCATTTGGGTTGGCCTAG+TGG | + | chr1_3:67106859-67106878 | Msa0135440:intron | 55.0% |
| GGTCCCAAGCCAATACCACT+AGG | - | chr1_3:67106877-67106896 | None:intergenic | 55.0% | |
| !! | AGTGGTATTGGCTTGGGACC+TGG | + | chr1_3:67106877-67106896 | Msa0135440:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+GGG | + | chr1_3:67106878-67106897 | Msa0135440:intron | 55.0% |
| TCGAACCTGAGACCTCAAGG+AGG | - | chr1_3:67106912-67106931 | None:intergenic | 55.0% | |
| ! | AACTGGTGGATGTCGACCAG+AGG | + | chr1_3:67107152-67107171 | Msa0135440:CDS | 55.0% |
| AGGCTTCGTTCGAGCTCCAT+GGG | + | chr1_3:67107698-67107717 | Msa0135440:CDS | 55.0% | |
| TATCTGATGAGCAGTGGGGC+TGG | + | chr1_3:67107900-67107919 | Msa0135440:CDS | 55.0% | |
| TCCCCCAGTGCTTCATCCAG+TGG | - | chr1_3:67104806-67104825 | None:intergenic | 60.0% | |
| !! | GGATGAAGCACTGGGGGACA+TGG | + | chr1_3:67104808-67104827 | Msa0135440:exon | 60.0% |
| ! | ATTGCTCCAGCTCTGGCTGC+TGG | + | chr1_3:67105172-67105191 | Msa0135440:CDS | 60.0% |
| ! | TCAAGGAGGAGCACACTCCC+AGG | - | chr1_3:67106898-67106917 | None:intergenic | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | + | chr1_3:67106897-67106916 | Msa0135440:intron | 60.0% |
| GTGCTCCTCCTTGAGGTCTC+AGG | + | chr1_3:67106904-67106923 | Msa0135440:intron | 60.0% | |
| CAGGCTTCGTTCGAGCTCCA+TGG | + | chr1_3:67107697-67107716 | Msa0135440:CDS | 60.0% | |
| GGCTTCGTTCGAGCTCCATG+GGG | + | chr1_3:67107699-67107718 | Msa0135440:CDS | 60.0% | |
| TTCGTTCGAGCTCCATGGGG+AGG | + | chr1_3:67107702-67107721 | Msa0135440:CDS | 60.0% | |
| GCACAACCAGCAGCCAGAGC+TGG | - | chr1_3:67105181-67105200 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67104684 | 67108131 | 67104684 | ID=Msa0135440;Name=Msa0135440 |
| chr1_3 | mRNA | 67104684 | 67108131 | 67104684 | ID=Msa0135440-mRNA-1;Parent=Msa0135440;Name=Msa0135440-mRNA-1;_AED=0.17;_eAED=0.17;_QI=143|1|1|1|1|1|13|182|394 |
| chr1_3 | exon | 67104684 | 67104829 | 67104684 | ID=Msa0135440-mRNA-1:exon:22983;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67104920 | 67105068 | 67104920 | ID=Msa0135440-mRNA-1:exon:22984;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67105141 | 67105233 | 67105141 | ID=Msa0135440-mRNA-1:exon:22985;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67105313 | 67105436 | 67105313 | ID=Msa0135440-mRNA-1:exon:22986;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67105571 | 67105636 | 67105571 | ID=Msa0135440-mRNA-1:exon:22987;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67105777 | 67105843 | 67105777 | ID=Msa0135440-mRNA-1:exon:22988;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67106074 | 67106150 | 67106074 | ID=Msa0135440-mRNA-1:exon:22989;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67106367 | 67106480 | 67106367 | ID=Msa0135440-mRNA-1:exon:22990;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67107096 | 67107173 | 67107096 | ID=Msa0135440-mRNA-1:exon:22991;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67107257 | 67107408 | 67107257 | ID=Msa0135440-mRNA-1:exon:22992;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67107502 | 67107562 | 67107502 | ID=Msa0135440-mRNA-1:exon:22993;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67107657 | 67107763 | 67107657 | ID=Msa0135440-mRNA-1:exon:22994;Parent=Msa0135440-mRNA-1 |
| chr1_3 | exon | 67107856 | 67108131 | 67107856 | ID=Msa0135440-mRNA-1:exon:22995;Parent=Msa0135440-mRNA-1 |
| chr1_3 | five_prime_UTR | 67104684 | 67104826 | 67104684 | ID=Msa0135440-mRNA-1:five_prime_utr;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67104827 | 67104829 | 67104827 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67104920 | 67105068 | 67104920 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67105141 | 67105233 | 67105141 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67105313 | 67105436 | 67105313 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67105571 | 67105636 | 67105571 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67105777 | 67105843 | 67105777 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67106074 | 67106150 | 67106074 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67106367 | 67106480 | 67106367 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67107096 | 67107173 | 67107096 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67107257 | 67107408 | 67107257 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67107502 | 67107562 | 67107502 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67107657 | 67107763 | 67107657 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | CDS | 67107856 | 67107949 | 67107856 | ID=Msa0135440-mRNA-1:cds;Parent=Msa0135440-mRNA-1 |
| chr1_3 | three_prime_UTR | 67107950 | 67108131 | 67107950 | ID=Msa0135440-mRNA-1:three_prime_utr;Parent=Msa0135440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
