AlfalfaGEDB | Msa0135680

M. sativa cultivar zhongmu-4 / Msa0135680

KEGG: K04733
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135680	XP_024626475.2	91.629	657	54	1	1	657	1	656	0.0	1160

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135680	sp\|Q8S9L6\|CRK29_ARATH	51.061	660	269	16	7	628	5	648	0.0	600

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135680	A0A396JZN3	91.629	657	54	1	1	657	35	690	0.0	1158

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0041410	Msa0135680	0.842164	3.056454e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0135680	MtrunA17_Chr1g0206451	91.629	657	54	1	1	657	35	690	1158
Msa0135680	MtrunA17_Chr1g0206461	84.475	657	96	4	1	657	1	651	1112
Msa0135680	MtrunA17_Chr1g0206521	84.475	657	98	2	1	657	643	1295	1089
Msa0135680	MtrunA17_Chr1g0206521	83.881	639	99	2	1	639	1	635	1016
Msa0135680	MtrunA17_Chr1g0206531	83.952	673	90	3	1	657	1	671	1078
Msa0135680	MtrunA17_Chr5g0426941	58.631	672	247	8	10	657	1	665	752
Msa0135680	MtrunA17_Chr1g0154371	59.911	676	247	9	1	657	8	678	747
Msa0135680	MtrunA17_Chr1g0206561	60.303	660	244	6	9	657	3	655	724
Msa0135680	MtrunA17_Chr1g0154311	57.375	678	235	12	17	657	10	670	719
Msa0135680	MtrunA17_Chr1g0154351	56.140	684	251	11	11	657	3	674	709

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0135680	AT4G21410.3	51.061	660	269	16	7	628	5	648	600
Msa0135680	AT4G23180.1	47.840	648	303	12	30	657	37	669	585
Msa0135680	AT4G38830.1	48.694	651	308	9	27	657	21	665	584
Msa0135680	AT4G05200.1	46.596	661	323	13	15	656	12	661	575
Msa0135680	AT4G05200.2	46.596	661	323	13	15	656	30	679	575
Msa0135680	AT4G21400.2	49.216	638	299	10	7	624	5	637	573
Msa0135680	AT4G23230.1	49.919	615	268	14	32	624	26	622	571
Msa0135680	AT4G21400.1	48.228	649	301	10	7	624	5	649	566
Msa0135680	AT4G23160.1	46.697	651	313	12	30	657	43	682	562
Msa0135680	AT4G23280.1	47.256	656	312	12	26	657	21	666	550

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Find 121 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCCCATCAGAAGA+AGG	0.543138	1_3:-67346464	Msa0135680:intron
AAAAGGTTGTCAACAAATTC+AGG	0.393857	1_3:-67345648	Msa0135680:CDS
AAACTTGGACATGGCGGATT+TGG	0.256425	1_3:-67345802	Msa0135680:CDS
AAAGCTTGTCCCGTTCTTCA+TGG	0.390723	1_3:-67344775	Msa0135680:CDS
AACGCCATTGGCCTCTGCAG+AGG	0.610743	1_3:-67346995	Msa0135680:CDS
AAGCATGTTTGGATTGGGAA+AGG	0.551701	1_3:-67345379	Msa0135680:CDS
AAGCTTGTCCCGTTCTTCAT+GGG	0.504451	1_3:-67344774	Msa0135680:CDS
AATCCTAAAATATCAGACTT+TGG	0.454959	1_3:-67345239	Msa0135680:CDS
AATCCTCGTGAAGGTAAAGA+AGG	0.566848	1_3:+67345324	None:intergenic
AATGAAATCTATCGAGGGTA+TGG	0.454048	1_3:+67344300	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTCAAACCGATCAATATT+TGG	-	chr1_3:67344467-67344486	Msa0135680:CDS	30.0%
CAAGAATGCCAAATATTGAT+CGG	+	chr1_3:67344478-67344497	None:intergenic	30.0%
CAATATTTGGCATTCTTGAA+TGG	-	chr1_3:67344480-67344499	Msa0135680:CDS	30.0%
TCGATTAAATATATCCACCT+CGG	+	chr1_3:67344543-67344562	None:intergenic	30.0%
AGTAATTACCTTCTTCTGAT+GGG	+	chr1_3:67344871-67344890	None:intergenic	30.0%
AATCATACTTGATTGCTACA+AGG	-	chr1_3:67344906-67344925	Msa0135680:intron	30.0%
GTCGTTATATACATGTTTGT+TGG	-	chr1_3:67344994-67345013	Msa0135680:intron	30.0%
TATATGCTTAAGGAAAAGGA+AGG	-	chr1_3:67345146-67345165	Msa0135680:intron	30.0%
TTTACTTTACTAACATGCCT+TGG	-	chr1_3:67345385-67345404	Msa0135680:CDS	30.0%
ATTTCTTCAAACATGATCCA+AGG	+	chr1_3:67345405-67345424	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	67343976	67347370	67343976	ID=Msa0135680;Name=Msa0135680
chr1_3	mRNA	67343976	67347370	67343976	ID=Msa0135680-mRNA-1;Parent=Msa0135680;Name=Msa0135680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=104\|1\|1\|1\|0.71\|0.5\|8\|228\|657
chr1_3	exon	67343976	67344096	67343976	ID=Msa0135680-mRNA-1:exon:23113;Parent=Msa0135680-mRNA-1
chr1_3	exon	67344201	67344613	67344201	ID=Msa0135680-mRNA-1:exon:23112;Parent=Msa0135680-mRNA-1
chr1_3	exon	67344747	67344897	67344747	ID=Msa0135680-mRNA-1:exon:23111;Parent=Msa0135680-mRNA-1
chr1_3	exon	67345176	67345413	67345176	ID=Msa0135680-mRNA-1:exon:23110;Parent=Msa0135680-mRNA-1
chr1_3	exon	67345493	67345703	67345493	ID=Msa0135680-mRNA-1:exon:23109;Parent=Msa0135680-mRNA-1
chr1_3	exon	67345789	67345925	67345789	ID=Msa0135680-mRNA-1:exon:23108;Parent=Msa0135680-mRNA-1
chr1_3	exon	67346157	67346285	67346157	ID=Msa0135680-mRNA-1:exon:23107;Parent=Msa0135680-mRNA-1
chr1_3	exon	67346465	67347370	67346465	ID=Msa0135680-mRNA-1:exon:23106;Parent=Msa0135680-mRNA-1
chr1_3	five_prime_UTR	67347267	67347370	67347267	ID=Msa0135680-mRNA-1:five_prime_utr;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67346465	67347266	67346465	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67346157	67346285	67346157	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67345789	67345925	67345789	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67345493	67345703	67345493	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67345176	67345413	67345176	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67344747	67344897	67344747	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	CDS	67344308	67344613	67344308	ID=Msa0135680-mRNA-1:cds;Parent=Msa0135680-mRNA-1
chr1_3	three_prime_UTR	67344201	67344307	67344201	ID=Msa0135680-mRNA-1:three_prime_utr;Parent=Msa0135680-mRNA-1
chr1_3	three_prime_UTR	67343976	67344096	67343976	ID=Msa0135680-mRNA-1:three_prime_utr;Parent=Msa0135680-mRNA-1

Gene Sequence

>Msa0135680

ATGGCAATTGTTTCTAGCAAGCTATTATTTTCCTTTTATTCTTTTCTCCTTTTTATTGTCATTATCGTATCTCAAGCCCAAGGCCAACCAGATTTTTTAAGCTACGCTTGTTTAAACAATAATGGCAACTACACAGCCAATAGCACCTATCAAAACAACCTCAACACCCTTTTATCCAATCTCACTTCCAACGAACAAATCAACTACGGTTTCTACAATTTTTCTTATGGCCAAAACACTGACAAAGTAAACGCCATTGGCCTCTGCAGAGGAGATGTTAACCCTGACGTTTGCCGCAGTTGTCTCAATGATTCAAGAGTTCTTCTCACAAAACTTTGTCCAAACCAAAAAGAAGCAATTGGTTGGTATGATGACTGCATGTTGCGTTACTCAAACCGATCAATATTTGGCATTCTTGAATGGACACCAAAGTTTTATTTGGCGAACTCGAACAATGTAACCGAGGTGGATATATTTAATCGAGTTCTTGGAAACTTGATGAGGAAATTGAAAGATAAAGCTGCATCAAGTGATTCTCGTCTTAAGTTTGCTGCGGATGATGCAACAGATGTGAATTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTGTCAGAGCAAGATTGCAATGATTGTTTAGAGTTTGCCATATCAGAAATACCAGTTTATTGTAATAACAAGATTGGTGGTAGAGCTGTCAAACCAAGTTGTAATATTAGATATGAAGTCTATCGCTTCTCTAATTCTACGACAGTAATAGACCAAGATAAAACCTTCCCATCAGAAGAAGAAAAAAGCAAATCATCACATACTATTATCGTCATAGTTGTGCCTACTGTTGTGGTTGTTGTTGCTGCCCAGCTAATTTTCATTTGTATATGCTTAAGGAAAAGGAAGGCGGCTACGATAAATCTTGAAGAAATAGAAGAAGATGATAACGATGATATTGAAATCGCTGAGTCATTGCAATTCAACTTCGAGACATTACGGGTTTCTACAAGTAACTTTTCTGAAGCTAATAAACTTGGACATGGCGGATTTGGAGTTGTTTATCAGGGTATACTCGCCGGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAACAAATTCAGGACAAGGGGATATTGAATTTAAGAATGAAGTGCTTTTAGTCGCTAAGCTTCAACATCGAAATTTAGTTAGACTACTTGGTTTTTGTCTAGAGGGAAGAGAAAGATTGCTCGTCTATGAATTTGTTCCGAATAAAAGTCTTGATTATTTTATATTTGATCCAATAAAAAAAGCATGTTTGGATTGGGAAAGGCGCTATAAAATCATTGGAGGTATTGCTAGAGGCCTTCTTTACCTTCACGAGGATTCTCAACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTATTAGACGAAAAGTTGAATCCTAAAATATCAGACTTTGGCATAGCCAGACTACTTCTTATCGATCAAACTCAAGTAAATACAAATAAAATCGTTGGAACATATGGATATATGGCTCCCGAGTATGTAAGATTTGGAGAATTTTCGGTAAAATCGGATGTTTTTAGTTTTGGAGTACTAGTTTTGGAGATTATAAGTGGCCAGAAAGCTTGTCCCGTTCTTCATGGGCGGAGTTCGGAGGATTTACTTAGCATTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAATTTAATAGATCCATCATTAAGCAACGGTTCACAAAATGAAATTATGAGATGCATTCACATTGGTTTGCTCTGTGTTCAAGAAAATTTGGTTGAAAGACCAACTATGGCAACCGTTGCACTCATGCTTAGTAGTTATTCTATCTCTCTCTCTGTACCTTTGGAGCCTGCATCTTTTGTGCTTGGCAGAACTAGAAGCCTTCCAGTTCGACACATGCAAGTTAAGGGAGAATCAAGAAACCATGCTTCAATTACTGACCCATACCCTCGATAG

Protein sequence

>Msa0135680

MAIVSSKLLFSFYSFLLFIVIIVSQAQGQPDFLSYACLNNNGNYTANSTYQNNLNTLLSNLTSNEQINYGFYNFSYGQNTDKVNAIGLCRGDVNPDVCRSCLNDSRVLLTKLCPNQKEAIGWYDDCMLRYSNRSIFGILEWTPKFYLANSNNVTEVDIFNRVLGNLMRKLKDKAASSDSRLKFAADDATDVNLNFQTIYGLVQCTPDLSEQDCNDCLEFAISEIPVYCNNKIGGRAVKPSCNIRYEVYRFSNSTTVIDQDKTFPSEEEKSKSSHTIIVIVVPTVVVVVAAQLIFICICLRKRKAATINLEEIEEDDNDDIEIAESLQFNFETLRVSTSNFSEANKLGHGGFGVVYQGILAGGQVIAVKRLSTNSGQGDIEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPIKKACLDWERRYKIIGGIARGLLYLHEDSQLRIIHRDLKASNILLDEKLNPKISDFGIARLLLIDQTQVNTNKIVGTYGYMAPEYVRFGEFSVKSDVFSFGVLVLEIISGQKACPVLHGRSSEDLLSIAWRNWREGTITNLIDPSLSNGSQNEIMRCIHIGLLCVQENLVERPTMATVALMLSSYSISLSVPLEPASFVLGRTRSLPVRHMQVKGESRNHASITDPYPR*