Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142160 | XP_003618443.1 | 77.750 | 400 | 84 | 2 | 1 | 399 | 1 | 396 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142160 | sp|Q9SD53|Y3720_ARATH | 27.896 | 423 | 268 | 9 | 18 | 411 | 39 | 453 | 6.69e-42 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142160 | G7KKD2 | 77.750 | 400 | 84 | 2 | 1 | 399 | 1 | 396 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142160 | Msa0904370 | 0.982980 | 1.650254e-156 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142160 | MtrunA17_Chr6g0452531 | 77.750 | 400 | 84 | 2 | 1 | 399 | 1 | 396 | 0.0 | 613 |
| Msa0142160 | MtrunA17_Chr6g0452501 | 77.250 | 400 | 86 | 2 | 1 | 399 | 1 | 396 | 0.0 | 612 |
| Msa0142160 | MtrunA17_Chr6g0452551 | 75.854 | 410 | 90 | 5 | 1 | 408 | 1 | 403 | 0.0 | 605 |
| Msa0142160 | MtrunA17_Chr6g0452601 | 74.334 | 413 | 101 | 1 | 1 | 408 | 1 | 413 | 0.0 | 605 |
| Msa0142160 | MtrunA17_Chr6g0452561 | 73.571 | 420 | 99 | 3 | 1 | 408 | 1 | 420 | 0.0 | 601 |
| Msa0142160 | MtrunA17_Chr6g0452611 | 75.561 | 401 | 89 | 4 | 1 | 399 | 1 | 394 | 0.0 | 584 |
| Msa0142160 | MtrunA17_Chr6g0452161 | 72.796 | 397 | 101 | 3 | 9 | 398 | 9 | 405 | 0.0 | 545 |
| Msa0142160 | MtrunA17_Chr6g0452591 | 67.990 | 403 | 120 | 3 | 9 | 408 | 39 | 435 | 0.0 | 542 |
| Msa0142160 | MtrunA17_Chr6g0457371 | 70.750 | 400 | 107 | 3 | 1 | 399 | 1 | 391 | 0.0 | 538 |
| Msa0142160 | MtrunA17_Chr3g0138001 | 67.581 | 401 | 120 | 3 | 6 | 398 | 7 | 405 | 0.0 | 523 |
| Msa0142160 | MtrunA17_Chr6g0452571 | 70.938 | 320 | 86 | 3 | 90 | 408 | 30 | 343 | 7.92e-155 | 441 |
| Msa0142160 | MtrunA17_Chr7g0218171 | 61.891 | 349 | 74 | 4 | 62 | 408 | 1 | 292 | 1.00e-136 | 394 |
| Msa0142160 | MtrunA17_Chr6g0452541 | 78.571 | 196 | 42 | 0 | 203 | 398 | 24 | 219 | 4.72e-108 | 318 |
| Msa0142160 | MtrunA17_Chr3g0118601 | 39.492 | 433 | 225 | 7 | 5 | 408 | 20 | 444 | 2.63e-97 | 298 |
| Msa0142160 | MtrunA17_Chr2g0296801 | 38.873 | 355 | 197 | 6 | 62 | 408 | 1 | 343 | 6.65e-71 | 227 |
| Msa0142160 | MtrunA17_Chr8g0335061 | 33.933 | 445 | 219 | 14 | 15 | 409 | 17 | 436 | 1.42e-68 | 224 |
| Msa0142160 | MtrunA17_Chr8g0335071 | 35.499 | 431 | 217 | 14 | 25 | 409 | 37 | 452 | 2.00e-67 | 221 |
| Msa0142160 | MtrunA17_Chr8g0334971 | 33.716 | 436 | 227 | 13 | 18 | 409 | 20 | 437 | 1.16e-66 | 219 |
| Msa0142160 | MtrunA17_Chr8g0335021 | 34.579 | 428 | 233 | 14 | 24 | 409 | 26 | 448 | 6.78e-66 | 217 |
| Msa0142160 | MtrunA17_Chr8g0334951 | 35.211 | 426 | 218 | 17 | 18 | 407 | 22 | 425 | 7.79e-62 | 206 |
| Msa0142160 | MtrunA17_Chr8g0335011 | 30.380 | 474 | 236 | 14 | 18 | 409 | 29 | 490 | 4.33e-58 | 197 |
| Msa0142160 | MtrunA17_Chr3g0138021 | 59.172 | 169 | 36 | 2 | 231 | 399 | 2 | 137 | 2.47e-56 | 183 |
| Msa0142160 | MtrunA17_Chr8g0334911 | 31.925 | 426 | 241 | 13 | 15 | 409 | 18 | 425 | 1.04e-54 | 187 |
| Msa0142160 | MtrunA17_Chr7g0265891 | 28.788 | 396 | 249 | 9 | 17 | 390 | 43 | 427 | 1.40e-48 | 171 |
| Msa0142160 | MtrunA17_Chr5g0439721 | 27.563 | 439 | 262 | 12 | 7 | 408 | 8 | 427 | 2.05e-47 | 168 |
| Msa0142160 | MtrunA17_Chr5g0439641 | 26.457 | 446 | 261 | 11 | 15 | 416 | 27 | 449 | 2.12e-46 | 166 |
| Msa0142160 | MtrunA17_Chr2g0300311 | 30.424 | 401 | 240 | 12 | 25 | 401 | 50 | 435 | 9.41e-46 | 164 |
| Msa0142160 | MtrunA17_Chr5g0401791 | 30.969 | 423 | 249 | 12 | 10 | 390 | 82 | 503 | 1.58e-45 | 165 |
| Msa0142160 | MtrunA17_Chr2g0297831 | 28.224 | 411 | 266 | 12 | 10 | 401 | 51 | 451 | 8.56e-41 | 151 |
| Msa0142160 | MtrunA17_Chr6g0452581 | 69.608 | 102 | 25 | 3 | 289 | 388 | 1 | 98 | 1.10e-36 | 130 |
| Msa0142160 | MtrunA17_Chr6g0452511 | 68.293 | 82 | 26 | 0 | 289 | 370 | 1 | 82 | 1.07e-35 | 126 |
| Msa0142160 | MtrunA17_Chr5g0440401 | 30.952 | 168 | 114 | 2 | 241 | 408 | 44 | 209 | 3.75e-25 | 102 |
| Msa0142160 | MtrunA17_Chr5g0439681 | 32.386 | 176 | 115 | 4 | 241 | 415 | 137 | 309 | 2.44e-24 | 102 |
| Msa0142160 | MtrunA17_Chr7g0218161 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 4.98e-23 | 91.7 |
| Msa0142160 | MtrunA17_Chr8g0354871 | 27.962 | 211 | 137 | 3 | 209 | 405 | 164 | 373 | 6.09e-22 | 96.7 |
| Msa0142160 | MtrunA17_Chr5g0439661 | 31.073 | 177 | 96 | 4 | 26 | 181 | 29 | 200 | 1.62e-20 | 89.0 |
| Msa0142160 | MtrunA17_Chr1g0170351 | 25.523 | 478 | 262 | 17 | 12 | 415 | 17 | 474 | 4.63e-20 | 92.0 |
| Msa0142160 | MtrunA17_Chr3g0091831 | 25.187 | 401 | 249 | 13 | 11 | 369 | 29 | 420 | 8.98e-20 | 91.3 |
| Msa0142160 | MtrunA17_Chr7g0238111 | 24.368 | 435 | 269 | 15 | 9 | 406 | 14 | 425 | 1.79e-19 | 90.1 |
| Msa0142160 | MtrunA17_Chr7g0238131 | 25.182 | 413 | 252 | 14 | 47 | 406 | 1 | 409 | 4.61e-19 | 88.6 |
| Msa0142160 | MtrunA17_Chr7g0238231 | 24.070 | 457 | 270 | 14 | 35 | 417 | 39 | 492 | 2.07e-18 | 87.0 |
| Msa0142160 | MtrunA17_Chr7g0238511 | 25.060 | 419 | 263 | 15 | 33 | 417 | 37 | 438 | 9.54e-17 | 82.0 |
| Msa0142160 | MtrunA17_Chr7g0238101 | 22.388 | 469 | 269 | 14 | 20 | 410 | 22 | 473 | 7.27e-16 | 79.3 |
| Msa0142160 | MtrunA17_Chr7g0242071 | 33.333 | 144 | 85 | 3 | 30 | 162 | 34 | 177 | 1.76e-15 | 78.2 |
| Msa0142160 | MtrunA17_Chr2g0297821 | 30.178 | 169 | 110 | 4 | 239 | 401 | 2 | 168 | 3.23e-15 | 73.6 |
| Msa0142160 | MtrunA17_Chr4g0002861 | 26.667 | 165 | 104 | 3 | 25 | 172 | 42 | 206 | 4.50e-15 | 77.0 |
| Msa0142160 | MtrunA17_Chr4g0002861 | 28.205 | 156 | 109 | 3 | 237 | 391 | 375 | 528 | 9.27e-11 | 63.5 |
| Msa0142160 | MtrunA17_Chr7g0238171 | 24.314 | 510 | 262 | 21 | 19 | 417 | 25 | 521 | 5.65e-15 | 76.6 |
| Msa0142160 | MtrunA17_Chr4g0002901 | 26.946 | 167 | 105 | 3 | 23 | 172 | 40 | 206 | 7.98e-15 | 76.3 |
| Msa0142160 | MtrunA17_Chr4g0002901 | 27.586 | 174 | 125 | 1 | 237 | 410 | 375 | 547 | 1.72e-13 | 72.4 |
| Msa0142160 | MtrunA17_Chr3g0107251 | 25.084 | 299 | 193 | 8 | 30 | 300 | 35 | 330 | 1.22e-14 | 75.5 |
| Msa0142160 | MtrunA17_Chr7g0242151 | 30.000 | 180 | 92 | 5 | 17 | 162 | 2 | 181 | 1.80e-14 | 75.1 |
| Msa0142160 | MtrunA17_Chr7g0238141 | 24.495 | 396 | 247 | 13 | 35 | 390 | 38 | 421 | 7.36e-14 | 73.2 |
| Msa0142160 | MtrunA17_Chr4g0002911 | 28.161 | 174 | 124 | 1 | 237 | 410 | 373 | 545 | 1.44e-13 | 72.4 |
| Msa0142160 | MtrunA17_Chr4g0002911 | 21.965 | 173 | 119 | 2 | 23 | 179 | 40 | 212 | 4.51e-11 | 64.7 |
| Msa0142160 | MtrunA17_Chr7g0238191 | 23.333 | 420 | 263 | 16 | 12 | 390 | 12 | 413 | 1.51e-13 | 72.0 |
| Msa0142160 | MtrunA17_Chr7g0238091 | 29.444 | 180 | 118 | 6 | 244 | 417 | 45 | 221 | 2.00e-12 | 66.2 |
| Msa0142160 | MtrunA17_Chr7g0232531 | 26.471 | 170 | 109 | 5 | 9 | 163 | 14 | 182 | 7.32e-12 | 65.5 |
| Msa0142160 | MtrunA17_Chr7g0220521 | 23.762 | 202 | 121 | 4 | 1 | 169 | 1 | 202 | 2.43e-11 | 65.5 |
| Msa0142160 | MtrunA17_Chr5g0440391 | 37.805 | 82 | 46 | 1 | 18 | 99 | 29 | 105 | 8.64e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142160 | AT4G31980.1 | 39.320 | 412 | 227 | 9 | 6 | 408 | 275 | 672 | 1.72e-80 | 261 |
| Msa0142160 | AT5G11290.2 | 34.466 | 412 | 249 | 8 | 6 | 408 | 15 | 414 | 6.35e-74 | 237 |
| Msa0142160 | AT2G28580.5 | 33.729 | 421 | 206 | 12 | 25 | 408 | 109 | 493 | 7.51e-60 | 203 |
| Msa0142160 | AT2G28580.4 | 33.492 | 421 | 207 | 12 | 25 | 408 | 123 | 507 | 1.00e-59 | 203 |
| Msa0142160 | AT2G28580.6 | 32.947 | 431 | 213 | 13 | 25 | 408 | 41 | 442 | 4.51e-59 | 200 |
| Msa0142160 | AT2G28580.2 | 32.947 | 431 | 213 | 13 | 25 | 408 | 123 | 524 | 1.35e-58 | 201 |
| Msa0142160 | AT2G28580.1 | 32.947 | 431 | 213 | 13 | 25 | 408 | 109 | 510 | 1.37e-58 | 200 |
| Msa0142160 | AT3G50170.1 | 30.317 | 442 | 260 | 10 | 10 | 410 | 94 | 528 | 1.36e-56 | 195 |
| Msa0142160 | AT3G50140.1 | 30.365 | 438 | 265 | 10 | 8 | 410 | 96 | 528 | 5.66e-56 | 193 |
| Msa0142160 | AT3G50150.1 | 29.817 | 436 | 269 | 9 | 7 | 410 | 68 | 498 | 5.66e-55 | 190 |
| Msa0142160 | AT3G50120.1 | 30.861 | 418 | 255 | 9 | 26 | 410 | 104 | 520 | 3.65e-54 | 188 |
| Msa0142160 | AT2G44930.1 | 31.429 | 420 | 237 | 12 | 25 | 407 | 84 | 489 | 1.90e-53 | 186 |
| Msa0142160 | AT3G50160.1 | 30.332 | 422 | 260 | 10 | 6 | 410 | 86 | 490 | 2.60e-52 | 182 |
| Msa0142160 | AT5G11290.1 | 31.461 | 356 | 224 | 7 | 62 | 408 | 1 | 345 | 9.19e-52 | 177 |
| Msa0142160 | AT3G50180.1 | 30.000 | 440 | 263 | 13 | 7 | 414 | 156 | 582 | 2.37e-50 | 179 |
| Msa0142160 | AT2G36430.1 | 28.272 | 382 | 251 | 8 | 25 | 390 | 45 | 419 | 6.34e-47 | 167 |
| Msa0142160 | AT3G47250.3 | 27.603 | 413 | 274 | 8 | 18 | 406 | 54 | 465 | 2.24e-46 | 166 |
| Msa0142160 | AT3G47250.2 | 27.603 | 413 | 274 | 8 | 18 | 406 | 54 | 465 | 2.24e-46 | 166 |
| Msa0142160 | AT3G47250.1 | 27.603 | 413 | 274 | 8 | 18 | 406 | 54 | 465 | 2.24e-46 | 166 |
| Msa0142160 | AT5G22540.1 | 28.889 | 405 | 254 | 8 | 8 | 390 | 15 | 407 | 1.01e-45 | 164 |
| Msa0142160 | AT3G50130.1 | 28.401 | 419 | 257 | 9 | 8 | 390 | 122 | 533 | 1.18e-45 | 166 |
| Msa0142160 | AT3G50190.1 | 28.103 | 427 | 260 | 9 | 8 | 410 | 79 | 482 | 3.34e-45 | 163 |
| Msa0142160 | AT5G22550.2 | 27.253 | 466 | 258 | 10 | 14 | 410 | 26 | 479 | 1.57e-44 | 162 |
| Msa0142160 | AT3G44710.1 | 26.882 | 465 | 267 | 11 | 18 | 415 | 40 | 498 | 1.50e-43 | 159 |
| Msa0142160 | AT1G67150.4 | 29.177 | 401 | 252 | 11 | 26 | 406 | 7 | 395 | 2.98e-43 | 156 |
| Msa0142160 | AT1G67150.1 | 29.177 | 401 | 252 | 11 | 26 | 406 | 7 | 395 | 2.98e-43 | 156 |
| Msa0142160 | AT3G47200.1 | 27.896 | 423 | 268 | 9 | 18 | 411 | 39 | 453 | 6.80e-43 | 157 |
| Msa0142160 | AT3G47200.2 | 27.896 | 423 | 268 | 9 | 18 | 411 | 39 | 453 | 6.80e-43 | 157 |
| Msa0142160 | AT1G67150.2 | 28.642 | 405 | 253 | 10 | 26 | 406 | 7 | 399 | 1.50e-42 | 154 |
| Msa0142160 | AT3G47210.1 | 29.670 | 364 | 236 | 5 | 18 | 367 | 86 | 443 | 1.68e-41 | 153 |
| Msa0142160 | AT2G28580.3 | 31.818 | 352 | 166 | 12 | 25 | 329 | 123 | 447 | 4.31e-41 | 152 |
| Msa0142160 | AT5G22560.1 | 25.105 | 474 | 253 | 10 | 25 | 410 | 47 | 506 | 5.27e-39 | 147 |
| Msa0142160 | AT5G22550.1 | 25.275 | 455 | 232 | 10 | 14 | 410 | 26 | 430 | 4.60e-33 | 129 |
| Msa0142160 | AT3G60470.1 | 37.912 | 182 | 101 | 4 | 228 | 408 | 359 | 529 | 1.73e-29 | 120 |
| Msa0142160 | AT3G60470.1 | 29.237 | 236 | 122 | 10 | 19 | 220 | 26 | 250 | 1.81e-15 | 78.6 |
| Msa0142160 | AT1G67150.3 | 25.693 | 397 | 228 | 14 | 26 | 406 | 7 | 352 | 4.47e-29 | 117 |
| Msa0142160 | AT3G50140.2 | 28.981 | 314 | 183 | 10 | 8 | 286 | 96 | 404 | 1.27e-28 | 116 |
| Msa0142160 | AT1G65985.1 | 24.178 | 426 | 251 | 11 | 24 | 390 | 13 | 425 | 1.19e-26 | 111 |
| Msa0142160 | AT1G65985.2 | 24.178 | 426 | 251 | 11 | 24 | 390 | 13 | 425 | 1.19e-26 | 111 |
| Msa0142160 | AT3G50170.2 | 27.244 | 312 | 179 | 11 | 10 | 280 | 94 | 398 | 1.99e-25 | 107 |
| Msa0142160 | AT3G50190.2 | 27.986 | 293 | 171 | 9 | 8 | 281 | 79 | 350 | 2.73e-24 | 103 |
| Msa0142160 | AT3G50150.2 | 26.603 | 312 | 192 | 9 | 7 | 286 | 68 | 374 | 7.17e-24 | 103 |
| Msa0142160 | AT3G50190.4 | 27.740 | 292 | 171 | 9 | 8 | 280 | 79 | 349 | 2.61e-23 | 100 |
| Msa0142160 | AT3G50190.3 | 27.740 | 292 | 171 | 9 | 8 | 280 | 79 | 349 | 2.61e-23 | 100 |
| Msa0142160 | AT3G02645.1 | 29.114 | 158 | 99 | 3 | 23 | 172 | 41 | 193 | 8.33e-16 | 79.7 |
| Msa0142160 | AT3G44700.1 | 30.909 | 110 | 68 | 3 | 24 | 125 | 47 | 156 | 7.28e-13 | 67.8 |
Find 73 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGACTTTCCATATTT+TGG | 0.129859 | 1_4:+959109 | Msa0142170:CDS |
| TACTGATTATGTTTCTGTTT+TGG | 0.238712 | 1_4:-958377 | Msa0142160:CDS |
| TTATTACAATAAATCAAAAT+TGG | 0.240088 | 1_4:-958713 | Msa0142160:CDS |
| ATTGGCTAACCAAGGTTTAA+AGG | 0.247641 | 1_4:+958885 | Msa0142170:intron |
| TCTGTAGCTAACTTGTTTAA+TGG | 0.252482 | 1_4:-958274 | Msa0142160:CDS |
| CAAACTGCTGCTTCCATTGC+TGG | 0.253565 | 1_4:-958115 | Msa0142160:CDS |
| TCAGTAATATATGACTTATC+AGG | 0.258209 | 1_4:+958394 | Msa0142170:intron |
| CGAAACTTTATTTCGGAATC+TGG | 0.258359 | 1_4:-958440 | Msa0142160:CDS |
| ACAAGTTCATCATGAGAAAA+TGG | 0.310104 | 1_4:+958976 | Msa0142170:intron |
| CTATTGAAAGTCGGGCTATT+AGG | 0.310270 | 1_4:-958621 | Msa0142160:CDS |
| TTGGATTACCTTATAAATAC+TGG | 0.312190 | 1_4:-958358 | Msa0142160:CDS |
| CATCCGTACCAGTATTTATA+AGG | 0.321897 | 1_4:+958350 | Msa0142170:CDS |
| AAATAACAGCGTTTGAAATC+AGG | 0.329629 | 1_4:+959009 | Msa0142170:intron |
| AATAAATCAAAATTGGATTT+CGG | 0.330499 | 1_4:-958706 | Msa0142160:CDS |
| ATTTCGGAATCTGGTTGCTT+TGG | 0.363887 | 1_4:-958431 | Msa0142160:CDS |
| ACTTGTTCAGAGGGAAATAC+TGG | 0.364801 | 1_4:-958320 | Msa0142160:CDS |
| ATGATACCGAAACTTTATTT+CGG | 0.365141 | 1_4:-958447 | Msa0142160:CDS |
| TTGGCTAACCAAGGTTTAAA+GGG | 0.399160 | 1_4:+958886 | Msa0142170:intron |
| AATTGTTAGAAGCTGGAGTT+AGG | 0.400251 | 1_4:-958555 | Msa0142160:CDS |
| AATTCCTCGATTAAGAGTTC+AGG | 0.402982 | 1_4:-958470 | Msa0142160:CDS |
| GGGCCAATGGAAACGACATT+GGG | 0.405405 | 1_4:+959156 | Msa0142170:CDS |
| GTAAGGGTGATATTAGTATA+AGG | 0.405612 | 1_4:-958684 | Msa0142160:CDS |
| GTAGTGAGTTTAAGAAAAGA+AGG | 0.409038 | 1_4:+958748 | Msa0142170:intron |
| ATCAAAATTGGATTTCGGTA+AGG | 0.419170 | 1_4:-958701 | Msa0142160:CDS |
| CGTTGAGTGTTGCATTTACA+AGG | 0.422302 | 1_4:-959220 | Msa0142160:CDS |
| TCAAAATTGGATTTCGGTAA+GGG | 0.439675 | 1_4:-958700 | Msa0142160:CDS |
| CAGATTCCGAAATAAAGTTT+CGG | 0.441185 | 1_4:+958441 | Msa0142170:CDS |
| CTAATAGCCCGACTTTCAAT+AGG | 0.441802 | 1_4:+958622 | Msa0142170:intron |
| GCAGCCTTCAACTTATGCTT+AGG | 0.442229 | 1_4:+958169 | None:intergenic |
| GTGGGTTTCCCTTTAAACCT+TGG | 0.444521 | 1_4:-958894 | Msa0142160:CDS |
| GGCACTTCACTGATCTGATT+AGG | 0.448554 | 1_4:-958663 | Msa0142160:CDS |
| TTCGGACATGTTATCATGGT+GGG | 0.449289 | 1_4:-958912 | Msa0142160:CDS |
| GCAACATCCTATTGAAAGTC+GGG | 0.449516 | 1_4:-958629 | Msa0142160:CDS |
| AAAGAAGGGATGGTAGTGTT+AGG | 0.452412 | 1_4:+958763 | Msa0142170:intron |
| GAAATACTGGAAAATTTGCT+TGG | 0.452996 | 1_4:-958307 | Msa0142160:CDS |
| TATGTCATCCTTCCGCTTGG+TGG | 0.456120 | 1_4:-959286 | Msa0142160:CDS |
| GTGATTATTGCAAAACTCCT+TGG | 0.460004 | 1_4:-958138 | Msa0142160:CDS |
| ATAAGTTGAAGGCTGCTCTC+AGG | 0.488978 | 1_4:-958162 | Msa0142160:CDS |
| TTAAACTTGCGTTGGTTCGT+TGG | 0.493243 | 1_4:+959064 | Msa0142170:intron |
| GCAACTGAATTGTTAGAAGC+TGG | 0.497793 | 1_4:-958562 | Msa0142160:CDS |
| TAAGTCTTCTATTATACCAT+TGG | 0.502124 | 1_4:+958867 | Msa0142170:intron |
| TAGTGAGTTTAAGAAAAGAA+GGG | 0.505002 | 1_4:+958749 | Msa0142170:intron |
| TAGGCACGAGTTCAACGAAC+TGG | 0.510230 | 1_4:-958602 | Msa0142160:CDS |
| GAATCCTAAGCATAAGTTGA+AGG | 0.511966 | 1_4:-958173 | Msa0142160:CDS |
| GGGGCCAATGGAAACGACAT+TGG | 0.525891 | 1_4:+959155 | Msa0142170:CDS |
| TGCAACATCCTATTGAAAGT+CGG | 0.529988 | 1_4:-958630 | Msa0142160:CDS |
| GTAAATGTTTACTTGACTTG+AGG | 0.531509 | 1_4:-958513 | Msa0142160:CDS |
| TATAAATACTGGTACGGATG+CGG | 0.536970 | 1_4:-958347 | Msa0142160:CDS |
| CAACGCAAGTTTAAACACCT+TGG | 0.541573 | 1_4:-959055 | Msa0142160:CDS |
| CAGTAATATATGACTTATCA+GGG | 0.541796 | 1_4:+958395 | Msa0142170:intron |
| CAATATGTCATCCTTCCGCT+TGG | 0.542036 | 1_4:-959289 | None:intergenic |
| TTTAAACCTTGGTTAGCCAA+TGG | 0.545466 | 1_4:-958883 | Msa0142160:CDS |
| TTACCTTATAAATACTGGTA+CGG | 0.550507 | 1_4:-958353 | Msa0142160:CDS |
| AAGTAGTAAGATTCCAGCAA+TGG | 0.553678 | 1_4:+958102 | None:intergenic |
| ATGCAACACTCAACGGTTGA+AGG | 0.559756 | 1_4:+959228 | Msa0142170:CDS |
| ATTGTGGTGAAAGGGGCCAA+TGG | 0.566621 | 1_4:+959143 | Msa0142170:CDS |
| CTTGTAAATGCAACACTCAA+CGG | 0.569371 | 1_4:+959221 | Msa0142170:CDS |
| TTCATCATGAGAAAATGGTA+AGG | 0.575285 | 1_4:+958981 | Msa0142170:intron |
| TGCGGATATACTTGTTCAGA+GGG | 0.575503 | 1_4:-958329 | Msa0142160:CDS |
| GAGTTTAAGAAAAGAAGGGA+TGG | 0.578086 | 1_4:+958753 | Msa0142170:intron |
| CAAGGTGTTTAAACTTGCGT+TGG | 0.589011 | 1_4:+959056 | Msa0142170:intron |
| ATTATACCATTGGCTAACCA+AGG | 0.597237 | 1_4:+958877 | Msa0142170:intron |
| TTTCGGACATGTTATCATGG+TGG | 0.599185 | 1_4:-958913 | Msa0142160:CDS |
| GGCCAATGGAAACGACATTG+GGG | 0.603653 | 1_4:+959157 | Msa0142170:CDS |
| ATGGAAGCAGCAGTTTGCCA+AGG | 0.604322 | 1_4:+958121 | None:intergenic |
| ATGCGGATATACTTGTTCAG+AGG | 0.606196 | 1_4:-958330 | Msa0142160:CDS |
| GATATCATCCACCAAGCGGA+AGG | 0.606930 | 1_4:+959278 | None:intergenic |
| TCTAACAATTCAGTTGCACT+CGG | 0.634838 | 1_4:+958568 | Msa0142170:intron |
| CTTTGATATCATCCACCAAG+CGG | 0.652123 | 1_4:+959274 | None:intergenic |
| TCATCCTGAACTCTTAATCG+AGG | 0.654081 | 1_4:+958466 | Msa0142170:CDS |
| CAACACTCAACGGTTGAAGG+TGG | 0.657082 | 1_4:+959231 | None:intergenic |
| AGAATCTATGTAGCTAACCA+AGG | 0.676168 | 1_4:+959038 | Msa0142170:intron |
| GCCAATGGAAACGACATTGG+GGG | 0.693624 | 1_4:+959158 | Msa0142170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTACAATAAATCAAAAT+TGG | - | chr1_4:958623-958642 | Msa0142160:CDS | 10.0% |
| !! | TTATTACAATAAATCAAAAT+TGG | - | chr1_4:958623-958642 | Msa0142160:CDS | 10.0% |
| !! | AAAAAGTTGAATTATAAAAC+AGG | + | chr1_4:958406-958425 | Msa0142170:intron | 15.0% |
| !!! | GTTTTATAATTCAACTTTTT+CGG | - | chr1_4:958406-958425 | Msa0142160:CDS | 15.0% |
| !!! | ATTTTTTCAATAACGAAAAA+GGG | + | chr1_4:958516-958535 | Msa0142170:intron | 15.0% |
| !!! | AATTTTTTCAATAACGAAAA+AGG | + | chr1_4:958517-958536 | Msa0142170:intron | 15.0% |
| !! | AATAAATCAAAATTGGATTT+CGG | - | chr1_4:958630-958649 | Msa0142160:CDS | 15.0% |
| !! | AAAAAGTTGAATTATAAAAC+AGG | + | chr1_4:958406-958425 | Msa0142170:intron | 15.0% |
| !!! | GTTTTATAATTCAACTTTTT+CGG | - | chr1_4:958406-958425 | Msa0142160:CDS | 15.0% |
| !!! | ATTTTTTCAATAACGAAAAA+GGG | + | chr1_4:958516-958535 | Msa0142170:intron | 15.0% |
| !!! | AATTTTTTCAATAACGAAAA+AGG | + | chr1_4:958517-958536 | Msa0142170:intron | 15.0% |
| !! | AATAAATCAAAATTGGATTT+CGG | - | chr1_4:958630-958649 | Msa0142160:CDS | 15.0% |
| !!! | CATTATTTTGTCTATTATGT+TGG | - | chr1_4:959272-959291 | Msa0142160:CDS | 20.0% |
| !!! | CATTATTTTGTCTATTATGT+TGG | - | chr1_4:959272-959291 | Msa0142160:CDS | 20.0% |
| ! | TAAGTCTTCTATTATACCAT+TGG | + | chr1_4:958472-958491 | Msa0142170:CDS | 25.0% |
| ! | TAGTGAGTTTAAGAAAAGAA+GGG | + | chr1_4:958590-958609 | Msa0142170:intron | 25.0% |
| !! | ATGATACCGAAACTTTATTT+CGG | - | chr1_4:958889-958908 | Msa0142160:CDS | 25.0% |
| ! | CAGTAATATATGACTTATCA+GGG | + | chr1_4:958944-958963 | Msa0142170:intron | 25.0% |
| ! | TCAGTAATATATGACTTATC+AGG | + | chr1_4:958945-958964 | Msa0142170:intron | 25.0% |
| !!! | TACTGATTATGTTTCTGTTT+TGG | - | chr1_4:958959-958978 | Msa0142160:CDS | 25.0% |
| ! | TTGGATTACCTTATAAATAC+TGG | - | chr1_4:958978-958997 | Msa0142160:CDS | 25.0% |
| ! | TTACCTTATAAATACTGGTA+CGG | - | chr1_4:958983-959002 | Msa0142160:CDS | 25.0% |
| ! | TAAGTCTTCTATTATACCAT+TGG | + | chr1_4:958472-958491 | Msa0142170:CDS | 25.0% |
| ! | TAGTGAGTTTAAGAAAAGAA+GGG | + | chr1_4:958590-958609 | Msa0142170:intron | 25.0% |
| !! | ATGATACCGAAACTTTATTT+CGG | - | chr1_4:958889-958908 | Msa0142160:CDS | 25.0% |
| ! | CAGTAATATATGACTTATCA+GGG | + | chr1_4:958944-958963 | Msa0142170:intron | 25.0% |
| ! | TCAGTAATATATGACTTATC+AGG | + | chr1_4:958945-958964 | Msa0142170:intron | 25.0% |
| !!! | TACTGATTATGTTTCTGTTT+TGG | - | chr1_4:958959-958978 | Msa0142160:CDS | 25.0% |
| ! | TTGGATTACCTTATAAATAC+TGG | - | chr1_4:958978-958997 | Msa0142160:CDS | 25.0% |
| ! | TTACCTTATAAATACTGGTA+CGG | - | chr1_4:958983-959002 | Msa0142160:CDS | 25.0% |
| ! | TTGAGTTTGCGAATTTTAGA+GGG | + | chr1_4:958144-958163 | None:intergenic | 30.0% |
| ! | GTTTCTGACTTTCCATATTT+TGG | + | chr1_4:958230-958249 | None:intergenic | 30.0% |
| ! | AAATAACAGCGTTTGAAATC+AGG | + | chr1_4:958330-958349 | Msa0142170:CDS | 30.0% |
| TTCATCATGAGAAAATGGTA+AGG | + | chr1_4:958358-958377 | Msa0142170:intron | 30.0% | |
| ACAAGTTCATCATGAGAAAA+TGG | + | chr1_4:958363-958382 | Msa0142170:intron | 30.0% | |
| GTAGTGAGTTTAAGAAAAGA+AGG | + | chr1_4:958591-958610 | Msa0142170:intron | 30.0% | |
| ATCAAAATTGGATTTCGGTA+AGG | - | chr1_4:958635-958654 | Msa0142160:CDS | 30.0% | |
| TCAAAATTGGATTTCGGTAA+GGG | - | chr1_4:958636-958655 | Msa0142160:CDS | 30.0% | |
| GTAAGGGTGATATTAGTATA+AGG | - | chr1_4:958652-958671 | Msa0142160:CDS | 30.0% | |
| ! | GTAAATGTTTACTTGACTTG+AGG | - | chr1_4:958823-958842 | Msa0142160:CDS | 30.0% |
| !! | TTTACTTGACTTGAGGTTTT+CGG | - | chr1_4:958830-958849 | Msa0142160:CDS | 30.0% |
| CAGATTCCGAAATAAAGTTT+CGG | + | chr1_4:958898-958917 | Msa0142170:intron | 30.0% | |
| ! | GAAATACTGGAAAATTTGCT+TGG | - | chr1_4:959029-959048 | Msa0142160:CDS | 30.0% |
| !! | TCTGTAGCTAACTTGTTTAA+TGG | - | chr1_4:959062-959081 | Msa0142160:CDS | 30.0% |
| !! | AAGACTTGAATGCTTTTTGT+AGG | - | chr1_4:959141-959160 | Msa0142160:CDS | 30.0% |
| ! | TTGAGTTTGCGAATTTTAGA+GGG | + | chr1_4:958144-958163 | None:intergenic | 30.0% |
| ! | GTTTCTGACTTTCCATATTT+TGG | + | chr1_4:958230-958249 | None:intergenic | 30.0% |
| ! | AAATAACAGCGTTTGAAATC+AGG | + | chr1_4:958330-958349 | Msa0142170:CDS | 30.0% |
| TTCATCATGAGAAAATGGTA+AGG | + | chr1_4:958358-958377 | Msa0142170:intron | 30.0% | |
| ACAAGTTCATCATGAGAAAA+TGG | + | chr1_4:958363-958382 | Msa0142170:intron | 30.0% | |
| GTAGTGAGTTTAAGAAAAGA+AGG | + | chr1_4:958591-958610 | Msa0142170:intron | 30.0% | |
| ATCAAAATTGGATTTCGGTA+AGG | - | chr1_4:958635-958654 | Msa0142160:CDS | 30.0% | |
| TCAAAATTGGATTTCGGTAA+GGG | - | chr1_4:958636-958655 | Msa0142160:CDS | 30.0% | |
| GTAAGGGTGATATTAGTATA+AGG | - | chr1_4:958652-958671 | Msa0142160:CDS | 30.0% | |
| ! | GTAAATGTTTACTTGACTTG+AGG | - | chr1_4:958823-958842 | Msa0142160:CDS | 30.0% |
| !! | TTTACTTGACTTGAGGTTTT+CGG | - | chr1_4:958830-958849 | Msa0142160:CDS | 30.0% |
| CAGATTCCGAAATAAAGTTT+CGG | + | chr1_4:958898-958917 | Msa0142170:intron | 30.0% | |
| ! | GAAATACTGGAAAATTTGCT+TGG | - | chr1_4:959029-959048 | Msa0142160:CDS | 30.0% |
| !! | TCTGTAGCTAACTTGTTTAA+TGG | - | chr1_4:959062-959081 | Msa0142160:CDS | 30.0% |
| !! | AAGACTTGAATGCTTTTTGT+AGG | - | chr1_4:959141-959160 | Msa0142160:CDS | 30.0% |
| CTTGTAAATGCAACACTCAA+CGG | + | chr1_4:958118-958137 | None:intergenic | 35.0% | |
| !! | TGAGTTTGCGAATTTTAGAG+GGG | + | chr1_4:958143-958162 | None:intergenic | 35.0% |
| ! | GTTGAGTTTGCGAATTTTAG+AGG | + | chr1_4:958145-958164 | None:intergenic | 35.0% |
| !!! | ACTTTCCATATTTTGGAGCT+GGG | + | chr1_4:958223-958242 | None:intergenic | 35.0% |
| AGAATCTATGTAGCTAACCA+AGG | + | chr1_4:958301-958320 | Msa0142170:CDS | 35.0% | |
| !!! | CTTTTTCGGACATGTTATCA+TGG | - | chr1_4:958420-958439 | Msa0142160:CDS | 35.0% |
| TTGGCTAACCAAGGTTTAAA+GGG | + | chr1_4:958453-958472 | Msa0142170:CDS | 35.0% | |
| ATTGGCTAACCAAGGTTTAA+AGG | + | chr1_4:958454-958473 | Msa0142170:CDS | 35.0% | |
| ! | TTTAAACCTTGGTTAGCCAA+TGG | - | chr1_4:958453-958472 | Msa0142160:CDS | 35.0% |
| ! | ATTATACCATTGGCTAACCA+AGG | + | chr1_4:958462-958481 | Msa0142170:CDS | 35.0% |
| GAGTTTAAGAAAAGAAGGGA+TGG | + | chr1_4:958586-958605 | Msa0142170:intron | 35.0% | |
| TGCAACATCCTATTGAAAGT+CGG | - | chr1_4:958706-958725 | Msa0142160:CDS | 35.0% | |
| TCTAACAATTCAGTTGCACT+CGG | + | chr1_4:958771-958790 | Msa0142170:intron | 35.0% | |
| AATTGTTAGAAGCTGGAGTT+AGG | - | chr1_4:958781-958800 | Msa0142160:CDS | 35.0% | |
| !! | TTACTTGACTTGAGGTTTTC+GGG | - | chr1_4:958831-958850 | Msa0142160:CDS | 35.0% |
| AATTCCTCGATTAAGAGTTC+AGG | - | chr1_4:958866-958885 | Msa0142160:CDS | 35.0% | |
| ! | CGAAACTTTATTTCGGAATC+TGG | - | chr1_4:958896-958915 | Msa0142160:CDS | 35.0% |
| CATCCGTACCAGTATTTATA+AGG | + | chr1_4:958989-959008 | Msa0142170:intron | 35.0% | |
| TATAAATACTGGTACGGATG+CGG | - | chr1_4:958989-959008 | Msa0142160:CDS | 35.0% | |
| ! | GAATCCTAAGCATAAGTTGA+AGG | - | chr1_4:959163-959182 | Msa0142160:CDS | 35.0% |
| GTGATTATTGCAAAACTCCT+TGG | - | chr1_4:959198-959217 | Msa0142160:CDS | 35.0% | |
| AAGTAGTAAGATTCCAGCAA+TGG | + | chr1_4:959237-959256 | None:intergenic | 35.0% | |
| CTTGTAAATGCAACACTCAA+CGG | + | chr1_4:958118-958137 | None:intergenic | 35.0% | |
| !! | TGAGTTTGCGAATTTTAGAG+GGG | + | chr1_4:958143-958162 | None:intergenic | 35.0% |
| ! | GTTGAGTTTGCGAATTTTAG+AGG | + | chr1_4:958145-958164 | None:intergenic | 35.0% |
| !!! | ACTTTCCATATTTTGGAGCT+GGG | + | chr1_4:958223-958242 | None:intergenic | 35.0% |
| AGAATCTATGTAGCTAACCA+AGG | + | chr1_4:958301-958320 | Msa0142170:CDS | 35.0% | |
| !!! | CTTTTTCGGACATGTTATCA+TGG | - | chr1_4:958420-958439 | Msa0142160:CDS | 35.0% |
| TTGGCTAACCAAGGTTTAAA+GGG | + | chr1_4:958453-958472 | Msa0142170:CDS | 35.0% | |
| ATTGGCTAACCAAGGTTTAA+AGG | + | chr1_4:958454-958473 | Msa0142170:CDS | 35.0% | |
| ! | TTTAAACCTTGGTTAGCCAA+TGG | - | chr1_4:958453-958472 | Msa0142160:CDS | 35.0% |
| ! | ATTATACCATTGGCTAACCA+AGG | + | chr1_4:958462-958481 | Msa0142170:CDS | 35.0% |
| GAGTTTAAGAAAAGAAGGGA+TGG | + | chr1_4:958586-958605 | Msa0142170:intron | 35.0% | |
| TGCAACATCCTATTGAAAGT+CGG | - | chr1_4:958706-958725 | Msa0142160:CDS | 35.0% | |
| TCTAACAATTCAGTTGCACT+CGG | + | chr1_4:958771-958790 | Msa0142170:intron | 35.0% | |
| AATTGTTAGAAGCTGGAGTT+AGG | - | chr1_4:958781-958800 | Msa0142160:CDS | 35.0% | |
| !! | TTACTTGACTTGAGGTTTTC+GGG | - | chr1_4:958831-958850 | Msa0142160:CDS | 35.0% |
| AATTCCTCGATTAAGAGTTC+AGG | - | chr1_4:958866-958885 | Msa0142160:CDS | 35.0% | |
| ! | CGAAACTTTATTTCGGAATC+TGG | - | chr1_4:958896-958915 | Msa0142160:CDS | 35.0% |
| CATCCGTACCAGTATTTATA+AGG | + | chr1_4:958989-959008 | Msa0142170:intron | 35.0% | |
| TATAAATACTGGTACGGATG+CGG | - | chr1_4:958989-959008 | Msa0142160:CDS | 35.0% | |
| ! | GAATCCTAAGCATAAGTTGA+AGG | - | chr1_4:959163-959182 | Msa0142160:CDS | 35.0% |
| GTGATTATTGCAAAACTCCT+TGG | - | chr1_4:959198-959217 | Msa0142160:CDS | 35.0% | |
| AAGTAGTAAGATTCCAGCAA+TGG | + | chr1_4:959237-959256 | None:intergenic | 35.0% | |
| CTTTGATATCATCCACCAAG+CGG | + | chr1_4:958065-958084 | None:intergenic | 40.0% | |
| ! | CGTTGAGTGTTGCATTTACA+AGG | - | chr1_4:958116-958135 | Msa0142160:CDS | 40.0% |
| !!! | TTTCCATATTTTGGAGCTGG+GGG | + | chr1_4:958221-958240 | None:intergenic | 40.0% |
| !!! | CTTTCCATATTTTGGAGCTG+GGG | + | chr1_4:958222-958241 | None:intergenic | 40.0% |
| !!! | GACTTTCCATATTTTGGAGC+TGG | + | chr1_4:958224-958243 | None:intergenic | 40.0% |
| !! | TTAAACTTGCGTTGGTTCGT+TGG | + | chr1_4:958275-958294 | Msa0142170:CDS | 40.0% |
| ! | CAAGGTGTTTAAACTTGCGT+TGG | + | chr1_4:958283-958302 | Msa0142170:CDS | 40.0% |
| CAACGCAAGTTTAAACACCT+TGG | - | chr1_4:958281-958300 | Msa0142160:CDS | 40.0% | |
| TTTCGGACATGTTATCATGG+TGG | - | chr1_4:958423-958442 | Msa0142160:CDS | 40.0% | |
| TTCGGACATGTTATCATGGT+GGG | - | chr1_4:958424-958443 | Msa0142160:CDS | 40.0% | |
| ! | AAAGAAGGGATGGTAGTGTT+AGG | + | chr1_4:958576-958595 | Msa0142170:intron | 40.0% |
| GCAACATCCTATTGAAAGTC+GGG | - | chr1_4:958707-958726 | Msa0142160:CDS | 40.0% | |
| CTAATAGCCCGACTTTCAAT+AGG | + | chr1_4:958717-958736 | Msa0142170:intron | 40.0% | |
| CTATTGAAAGTCGGGCTATT+AGG | - | chr1_4:958715-958734 | Msa0142160:CDS | 40.0% | |
| GCAACTGAATTGTTAGAAGC+TGG | - | chr1_4:958774-958793 | Msa0142160:CDS | 40.0% | |
| TCATCCTGAACTCTTAATCG+AGG | + | chr1_4:958873-958892 | Msa0142170:intron | 40.0% | |
| ATTTCGGAATCTGGTTGCTT+TGG | - | chr1_4:958905-958924 | Msa0142160:CDS | 40.0% | |
| ATGCGGATATACTTGTTCAG+AGG | - | chr1_4:959006-959025 | Msa0142160:CDS | 40.0% | |
| TGCGGATATACTTGTTCAGA+GGG | - | chr1_4:959007-959026 | Msa0142160:CDS | 40.0% | |
| ACTTGTTCAGAGGGAAATAC+TGG | - | chr1_4:959016-959035 | Msa0142160:CDS | 40.0% | |
| CTTTGATATCATCCACCAAG+CGG | + | chr1_4:958065-958084 | None:intergenic | 40.0% | |
| ! | CGTTGAGTGTTGCATTTACA+AGG | - | chr1_4:958116-958135 | Msa0142160:CDS | 40.0% |
| !!! | TTTCCATATTTTGGAGCTGG+GGG | + | chr1_4:958221-958240 | None:intergenic | 40.0% |
| !!! | CTTTCCATATTTTGGAGCTG+GGG | + | chr1_4:958222-958241 | None:intergenic | 40.0% |
| !!! | GACTTTCCATATTTTGGAGC+TGG | + | chr1_4:958224-958243 | None:intergenic | 40.0% |
| !! | TTAAACTTGCGTTGGTTCGT+TGG | + | chr1_4:958275-958294 | Msa0142170:CDS | 40.0% |
| ! | CAAGGTGTTTAAACTTGCGT+TGG | + | chr1_4:958283-958302 | Msa0142170:CDS | 40.0% |
| CAACGCAAGTTTAAACACCT+TGG | - | chr1_4:958281-958300 | Msa0142160:CDS | 40.0% | |
| TTTCGGACATGTTATCATGG+TGG | - | chr1_4:958423-958442 | Msa0142160:CDS | 40.0% | |
| TTCGGACATGTTATCATGGT+GGG | - | chr1_4:958424-958443 | Msa0142160:CDS | 40.0% | |
| ! | AAAGAAGGGATGGTAGTGTT+AGG | + | chr1_4:958576-958595 | Msa0142170:intron | 40.0% |
| GCAACATCCTATTGAAAGTC+GGG | - | chr1_4:958707-958726 | Msa0142160:CDS | 40.0% | |
| CTAATAGCCCGACTTTCAAT+AGG | + | chr1_4:958717-958736 | Msa0142170:intron | 40.0% | |
| CTATTGAAAGTCGGGCTATT+AGG | - | chr1_4:958715-958734 | Msa0142160:CDS | 40.0% | |
| GCAACTGAATTGTTAGAAGC+TGG | - | chr1_4:958774-958793 | Msa0142160:CDS | 40.0% | |
| TCATCCTGAACTCTTAATCG+AGG | + | chr1_4:958873-958892 | Msa0142170:intron | 40.0% | |
| ATTTCGGAATCTGGTTGCTT+TGG | - | chr1_4:958905-958924 | Msa0142160:CDS | 40.0% | |
| ATGCGGATATACTTGTTCAG+AGG | - | chr1_4:959006-959025 | Msa0142160:CDS | 40.0% | |
| TGCGGATATACTTGTTCAGA+GGG | - | chr1_4:959007-959026 | Msa0142160:CDS | 40.0% | |
| ACTTGTTCAGAGGGAAATAC+TGG | - | chr1_4:959016-959035 | Msa0142160:CDS | 40.0% | |
| ATGCAACACTCAACGGTTGA+AGG | + | chr1_4:958111-958130 | None:intergenic | 45.0% | |
| GTGGGTTTCCCTTTAAACCT+TGG | - | chr1_4:958442-958461 | Msa0142160:CDS | 45.0% | |
| GGCACTTCACTGATCTGATT+AGG | - | chr1_4:958673-958692 | Msa0142160:CDS | 45.0% | |
| GCAGCCTTCAACTTATGCTT+AGG | + | chr1_4:959170-959189 | Msa0142170:CDS | 45.0% | |
| ! | ATAAGTTGAAGGCTGCTCTC+AGG | - | chr1_4:959174-959193 | Msa0142160:CDS | 45.0% |
| ATGCAACACTCAACGGTTGA+AGG | + | chr1_4:958111-958130 | None:intergenic | 45.0% | |
| GTGGGTTTCCCTTTAAACCT+TGG | - | chr1_4:958442-958461 | Msa0142160:CDS | 45.0% | |
| GGCACTTCACTGATCTGATT+AGG | - | chr1_4:958673-958692 | Msa0142160:CDS | 45.0% | |
| GCAGCCTTCAACTTATGCTT+AGG | + | chr1_4:959170-959189 | Msa0142170:CDS | 45.0% | |
| ! | ATAAGTTGAAGGCTGCTCTC+AGG | - | chr1_4:959174-959193 | Msa0142160:CDS | 45.0% |
| GATATCATCCACCAAGCGGA+AGG | + | chr1_4:958061-958080 | None:intergenic | 50.0% | |
| CAACACTCAACGGTTGAAGG+TGG | + | chr1_4:958108-958127 | None:intergenic | 50.0% | |
| ! | ACCCCCAATGTCGTTTCCAT+TGG | - | chr1_4:958177-958196 | Msa0142160:CDS | 50.0% |
| GCCAATGGAAACGACATTGG+GGG | + | chr1_4:958181-958200 | None:intergenic | 50.0% | |
| GGCCAATGGAAACGACATTG+GGG | + | chr1_4:958182-958201 | None:intergenic | 50.0% | |
| GGGCCAATGGAAACGACATT+GGG | + | chr1_4:958183-958202 | None:intergenic | 50.0% | |
| ATTGTGGTGAAAGGGGCCAA+TGG | + | chr1_4:958196-958215 | None:intergenic | 50.0% | |
| TGGGGGTGATTGTGGTGAAA+GGG | + | chr1_4:958204-958223 | None:intergenic | 50.0% | |
| TCACCCCCAGCTCCAAAATA+TGG | - | chr1_4:958215-958234 | Msa0142160:CDS | 50.0% | |
| TAGGCACGAGTTCAACGAAC+TGG | - | chr1_4:958734-958753 | Msa0142160:CDS | 50.0% | |
| !! | CTTGACTTGAGGTTTTCGGG+AGG | - | chr1_4:958834-958853 | Msa0142160:CDS | 50.0% |
| ATGGAAGCAGCAGTTTGCCA+AGG | + | chr1_4:959218-959237 | Msa0142170:CDS | 50.0% | |
| ! | CAAACTGCTGCTTCCATTGC+TGG | - | chr1_4:959221-959240 | Msa0142160:CDS | 50.0% |
| GATATCATCCACCAAGCGGA+AGG | + | chr1_4:958061-958080 | None:intergenic | 50.0% | |
| CAACACTCAACGGTTGAAGG+TGG | + | chr1_4:958108-958127 | None:intergenic | 50.0% | |
| ! | ACCCCCAATGTCGTTTCCAT+TGG | - | chr1_4:958177-958196 | Msa0142160:CDS | 50.0% |
| GCCAATGGAAACGACATTGG+GGG | + | chr1_4:958181-958200 | None:intergenic | 50.0% | |
| GGCCAATGGAAACGACATTG+GGG | + | chr1_4:958182-958201 | None:intergenic | 50.0% | |
| GGGCCAATGGAAACGACATT+GGG | + | chr1_4:958183-958202 | None:intergenic | 50.0% | |
| ATTGTGGTGAAAGGGGCCAA+TGG | + | chr1_4:958196-958215 | None:intergenic | 50.0% | |
| TGGGGGTGATTGTGGTGAAA+GGG | + | chr1_4:958204-958223 | None:intergenic | 50.0% | |
| TCACCCCCAGCTCCAAAATA+TGG | - | chr1_4:958215-958234 | Msa0142160:CDS | 50.0% | |
| TAGGCACGAGTTCAACGAAC+TGG | - | chr1_4:958734-958753 | Msa0142160:CDS | 50.0% | |
| !! | CTTGACTTGAGGTTTTCGGG+AGG | - | chr1_4:958834-958853 | Msa0142160:CDS | 50.0% |
| ATGGAAGCAGCAGTTTGCCA+AGG | + | chr1_4:959218-959237 | Msa0142170:CDS | 50.0% | |
| ! | CAAACTGCTGCTTCCATTGC+TGG | - | chr1_4:959221-959240 | Msa0142160:CDS | 50.0% |
| GGGGCCAATGGAAACGACAT+TGG | + | chr1_4:958184-958203 | None:intergenic | 55.0% | |
| GGGGGTGATTGTGGTGAAAG+GGG | + | chr1_4:958203-958222 | None:intergenic | 55.0% | |
| CTGGGGGTGATTGTGGTGAA+AGG | + | chr1_4:958205-958224 | None:intergenic | 55.0% | |
| ! | TTTGGAGCTGGGGGTGATTG+TGG | + | chr1_4:958212-958231 | None:intergenic | 55.0% |
| GGGGCCAATGGAAACGACAT+TGG | + | chr1_4:958184-958203 | None:intergenic | 55.0% | |
| GGGGGTGATTGTGGTGAAAG+GGG | + | chr1_4:958203-958222 | None:intergenic | 55.0% | |
| CTGGGGGTGATTGTGGTGAA+AGG | + | chr1_4:958205-958224 | None:intergenic | 55.0% | |
| ! | TTTGGAGCTGGGGGTGATTG+TGG | + | chr1_4:958212-958231 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 958051 | 959307 | 958051 | ID=Msa0142160;Name=Msa0142160 |
| chr1_4 | mRNA | 958051 | 959307 | 958051 | ID=Msa0142160-mRNA-1;Parent=Msa0142160;Name=Msa0142160-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|418 |
| chr1_4 | exon | 958051 | 959307 | 958051 | ID=Msa0142160-mRNA-1:exon:289;Parent=Msa0142160-mRNA-1 |
| chr1_4 | CDS | 958051 | 959307 | 958051 | ID=Msa0142160-mRNA-1:cds;Parent=Msa0142160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
