Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142400 | XP_003630217.1 | 95.858 | 507 | 21 | 0 | 1 | 507 | 1 | 507 | 0.0 | 1005 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142400 | sp|Q5NE24|NSP2_MEDTR | 38.095 | 399 | 194 | 12 | 136 | 496 | 117 | 500 | 8.37e-65 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142400 | G7LD66 | 95.858 | 507 | 21 | 0 | 1 | 507 | 1 | 507 | 0.0 | 1005 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0142400 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142400 | Msa1391470 | 0.971669 | 1.578440e-133 | -8.615850e-47 |
| Msa0142400 | Msa1398780 | 0.967587 | 1.747529e-127 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142400 | MtrunA17_Chr8g0383981 | 95.858 | 507 | 21 | 0 | 1 | 507 | 1 | 507 | 0.0 | 1005 |
| Msa0142400 | MtrunA17_Chr8g0383561 | 86.364 | 154 | 19 | 1 | 1 | 154 | 1 | 152 | 3.73e-87 | 265 |
| Msa0142400 | MtrunA17_Chr3g0114841 | 38.095 | 399 | 194 | 12 | 136 | 496 | 117 | 500 | 6.17e-66 | 221 |
| Msa0142400 | MtrunA17_Chr5g0424131 | 38.060 | 402 | 210 | 14 | 125 | 496 | 107 | 499 | 7.77e-65 | 218 |
| Msa0142400 | MtrunA17_Chr4g0038761 | 32.796 | 372 | 219 | 12 | 144 | 499 | 89 | 445 | 8.21e-42 | 155 |
| Msa0142400 | MtrunA17_Chr2g0306641 | 30.952 | 378 | 230 | 13 | 136 | 495 | 122 | 486 | 6.29e-41 | 154 |
| Msa0142400 | MtrunA17_Chr3g0110971 | 32.905 | 389 | 214 | 15 | 136 | 495 | 216 | 586 | 8.38e-40 | 152 |
| Msa0142400 | MtrunA17_Chr7g0224271 | 30.958 | 407 | 223 | 15 | 126 | 495 | 287 | 672 | 5.74e-39 | 150 |
| Msa0142400 | MtrunA17_Chr4g0057291 | 29.177 | 401 | 233 | 16 | 136 | 504 | 289 | 670 | 2.02e-36 | 143 |
| Msa0142400 | MtrunA17_Chr8g0376381 | 29.708 | 377 | 227 | 12 | 136 | 495 | 166 | 521 | 1.24e-35 | 139 |
| Msa0142400 | MtrunA17_Chr7g0245601 | 27.614 | 373 | 229 | 14 | 144 | 497 | 443 | 793 | 3.51e-33 | 134 |
| Msa0142400 | MtrunA17_Chr4g0039661 | 31.818 | 374 | 216 | 17 | 144 | 495 | 198 | 554 | 3.91e-31 | 126 |
| Msa0142400 | MtrunA17_Chr1g0200401 | 30.633 | 395 | 226 | 18 | 136 | 495 | 77 | 458 | 3.00e-27 | 114 |
| Msa0142400 | MtrunA17_Chr7g0230731 | 27.078 | 373 | 251 | 9 | 133 | 495 | 366 | 727 | 7.06e-27 | 114 |
| Msa0142400 | MtrunA17_Chr1g0183641 | 26.042 | 384 | 237 | 13 | 135 | 496 | 119 | 477 | 4.82e-26 | 110 |
| Msa0142400 | MtrunA17_Chr2g0319091 | 27.604 | 384 | 240 | 16 | 136 | 495 | 209 | 578 | 7.88e-26 | 111 |
| Msa0142400 | MtrunA17_Chr4g0076091 | 25.189 | 397 | 261 | 14 | 123 | 496 | 160 | 543 | 1.74e-25 | 109 |
| Msa0142400 | MtrunA17_Chr7g0230771 | 26.542 | 373 | 253 | 9 | 133 | 495 | 369 | 730 | 2.92e-25 | 110 |
| Msa0142400 | MtrunA17_Chr8g0357601 | 26.823 | 384 | 246 | 13 | 136 | 495 | 179 | 551 | 4.42e-25 | 108 |
| Msa0142400 | MtrunA17_Chr5g0445331 | 25.542 | 415 | 268 | 15 | 111 | 495 | 128 | 531 | 5.74e-25 | 108 |
| Msa0142400 | MtrunA17_Chr4g0031711 | 25.862 | 406 | 248 | 17 | 127 | 498 | 349 | 735 | 1.76e-24 | 107 |
| Msa0142400 | MtrunA17_Chr2g0294461 | 27.160 | 405 | 243 | 16 | 126 | 495 | 197 | 584 | 1.96e-24 | 107 |
| Msa0142400 | MtrunA17_Chr5g0447691 | 27.518 | 407 | 253 | 18 | 114 | 495 | 154 | 543 | 3.54e-24 | 105 |
| Msa0142400 | MtrunA17_Chr3g0101141 | 27.157 | 394 | 254 | 16 | 123 | 495 | 160 | 541 | 3.67e-24 | 105 |
| Msa0142400 | MtrunA17_Chr5g0401131 | 26.684 | 386 | 250 | 16 | 138 | 497 | 113 | 491 | 4.87e-24 | 105 |
| Msa0142400 | MtrunA17_Chr3g0125811 | 26.649 | 379 | 244 | 12 | 139 | 495 | 203 | 569 | 1.17e-23 | 104 |
| Msa0142400 | MtrunA17_Chr1g0159461 | 27.368 | 380 | 240 | 14 | 139 | 495 | 225 | 591 | 2.30e-23 | 103 |
| Msa0142400 | MtrunA17_Chr7g0238891 | 25.485 | 412 | 259 | 17 | 115 | 498 | 351 | 742 | 2.56e-23 | 103 |
| Msa0142400 | MtrunA17_Chr2g0328391 | 24.623 | 398 | 261 | 16 | 127 | 498 | 287 | 671 | 3.29e-23 | 103 |
| Msa0142400 | MtrunA17_Chr2g0328431 | 24.474 | 380 | 245 | 16 | 144 | 498 | 294 | 656 | 6.74e-23 | 102 |
| Msa0142400 | MtrunA17_Chr4g0031741 | 25.648 | 386 | 244 | 15 | 139 | 498 | 284 | 652 | 8.68e-23 | 102 |
| Msa0142400 | MtrunA17_Chr2g0290241 | 26.257 | 358 | 220 | 15 | 168 | 495 | 81 | 424 | 1.01e-22 | 100 |
| Msa0142400 | MtrunA17_Chr2g0294471 | 26.980 | 404 | 242 | 17 | 126 | 495 | 191 | 575 | 1.13e-22 | 101 |
| Msa0142400 | MtrunA17_Chr4g0057891 | 27.692 | 390 | 236 | 16 | 136 | 495 | 146 | 519 | 1.48e-21 | 97.8 |
| Msa0142400 | MtrunA17_Chr2g0328411 | 24.000 | 375 | 249 | 16 | 144 | 496 | 294 | 654 | 2.92e-21 | 97.4 |
| Msa0142400 | MtrunA17_Chr4g0031701 | 24.495 | 396 | 248 | 16 | 136 | 498 | 251 | 628 | 4.54e-20 | 93.6 |
| Msa0142400 | MtrunA17_Chr4g0012071 | 26.702 | 382 | 240 | 16 | 133 | 495 | 190 | 550 | 1.56e-18 | 88.6 |
| Msa0142400 | MtrunA17_Chr4g0031731 | 25.231 | 325 | 200 | 13 | 136 | 434 | 251 | 558 | 4.15e-18 | 87.4 |
| Msa0142400 | MtrunA17_Chr2g0328381 | 22.727 | 396 | 277 | 14 | 122 | 498 | 258 | 643 | 5.46e-18 | 87.0 |
| Msa0142400 | MtrunA17_Chr8g0373561 | 27.005 | 374 | 247 | 13 | 136 | 495 | 179 | 540 | 7.22e-18 | 86.7 |
| Msa0142400 | MtrunA17_Chr4g0031721 | 25.570 | 395 | 241 | 18 | 136 | 498 | 313 | 686 | 1.10e-17 | 86.3 |
| Msa0142400 | MtrunA17_Chr2g0328341 | 23.969 | 388 | 262 | 15 | 132 | 498 | 265 | 640 | 2.08e-17 | 85.5 |
| Msa0142400 | MtrunA17_Chr7g0270031 | 28.523 | 298 | 174 | 14 | 219 | 495 | 274 | 553 | 1.39e-15 | 79.3 |
| Msa0142400 | MtrunA17_Chr5g0401421 | 22.248 | 427 | 252 | 12 | 139 | 498 | 35 | 448 | 3.17e-15 | 77.8 |
| Msa0142400 | MtrunA17_Chr2g0329591 | 24.444 | 360 | 216 | 14 | 177 | 497 | 110 | 452 | 1.66e-14 | 75.9 |
| Msa0142400 | MtrunA17_Chr1g0194621 | 25.062 | 403 | 251 | 17 | 126 | 495 | 133 | 517 | 2.29e-14 | 75.5 |
| Msa0142400 | MtrunA17_Chr2g0328361 | 22.670 | 397 | 251 | 14 | 122 | 498 | 257 | 617 | 1.21e-13 | 73.6 |
| Msa0142400 | MtrunA17_Chr5g0396491 | 29.834 | 181 | 116 | 7 | 136 | 310 | 53 | 228 | 1.37e-13 | 72.8 |
| Msa0142400 | MtrunA17_Chr4g0053901 | 22.565 | 421 | 254 | 14 | 139 | 497 | 59 | 469 | 3.34e-13 | 71.6 |
| Msa0142400 | MtrunA17_Chr4g0038851 | 28.155 | 206 | 134 | 7 | 136 | 332 | 45 | 245 | 2.04e-12 | 69.3 |
| Msa0142400 | MtrunA17_Chr2g0328371 | 24.473 | 237 | 154 | 7 | 211 | 433 | 5 | 230 | 2.81e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142400 | AT4G08250.1 | 32.905 | 389 | 228 | 14 | 136 | 501 | 104 | 482 | 1.09e-47 | 172 |
| Msa0142400 | AT1G55580.1 | 35.238 | 315 | 162 | 12 | 209 | 495 | 144 | 444 | 4.10e-42 | 156 |
| Msa0142400 | AT5G41920.1 | 32.275 | 378 | 220 | 14 | 136 | 495 | 40 | 399 | 1.47e-40 | 151 |
| Msa0142400 | AT3G03450.1 | 29.973 | 377 | 235 | 13 | 136 | 495 | 180 | 544 | 5.19e-37 | 144 |
| Msa0142400 | AT1G66350.1 | 29.178 | 377 | 227 | 14 | 136 | 495 | 152 | 505 | 2.05e-35 | 139 |
| Msa0142400 | AT5G17490.1 | 30.311 | 386 | 230 | 14 | 130 | 495 | 149 | 515 | 8.51e-35 | 137 |
| Msa0142400 | AT2G01570.1 | 29.351 | 385 | 222 | 16 | 136 | 495 | 221 | 580 | 1.07e-32 | 132 |
| Msa0142400 | AT1G14920.1 | 28.424 | 387 | 223 | 16 | 136 | 495 | 169 | 528 | 1.16e-31 | 128 |
| Msa0142400 | AT3G54220.1 | 27.394 | 376 | 229 | 14 | 144 | 497 | 298 | 651 | 5.90e-31 | 127 |
| Msa0142400 | AT1G63100.1 | 25.000 | 404 | 251 | 14 | 129 | 496 | 242 | 629 | 4.30e-30 | 124 |
| Msa0142400 | AT5G66770.1 | 29.738 | 343 | 203 | 12 | 177 | 495 | 255 | 583 | 4.51e-30 | 124 |
| Msa0142400 | AT1G63100.2 | 25.000 | 404 | 251 | 14 | 129 | 496 | 267 | 654 | 7.31e-30 | 124 |
| Msa0142400 | AT5G59450.1 | 27.475 | 404 | 241 | 18 | 136 | 506 | 224 | 608 | 8.52e-30 | 123 |
| Msa0142400 | AT3G50650.1 | 29.661 | 354 | 211 | 14 | 167 | 495 | 201 | 541 | 8.62e-29 | 120 |
| Msa0142400 | AT4G17230.1 | 29.073 | 399 | 238 | 16 | 128 | 497 | 144 | 526 | 1.22e-28 | 119 |
| Msa0142400 | AT4G17230.2 | 29.073 | 399 | 238 | 16 | 128 | 497 | 144 | 526 | 1.22e-28 | 119 |
| Msa0142400 | AT2G04890.1 | 28.465 | 404 | 244 | 18 | 119 | 495 | 27 | 412 | 9.98e-28 | 115 |
| Msa0142400 | AT3G46600.2 | 28.278 | 389 | 233 | 15 | 138 | 498 | 3 | 373 | 7.99e-27 | 112 |
| Msa0142400 | AT1G50600.3 | 26.166 | 386 | 257 | 13 | 129 | 495 | 149 | 525 | 8.30e-27 | 114 |
| Msa0142400 | AT3G46600.1 | 27.423 | 423 | 256 | 16 | 103 | 497 | 181 | 580 | 8.55e-27 | 114 |
| Msa0142400 | AT3G46600.3 | 27.423 | 423 | 256 | 16 | 103 | 497 | 149 | 548 | 8.74e-27 | 114 |
| Msa0142400 | AT1G50600.2 | 26.166 | 386 | 257 | 13 | 129 | 495 | 224 | 600 | 1.74e-26 | 113 |
| Msa0142400 | AT1G50600.1 | 26.166 | 386 | 257 | 13 | 129 | 495 | 220 | 596 | 1.91e-26 | 113 |
| Msa0142400 | AT5G48150.1 | 27.833 | 406 | 247 | 16 | 118 | 495 | 102 | 489 | 2.10e-26 | 112 |
| Msa0142400 | AT5G48150.4 | 27.833 | 406 | 247 | 16 | 118 | 495 | 102 | 489 | 2.10e-26 | 112 |
| Msa0142400 | AT5G48150.2 | 27.833 | 406 | 247 | 16 | 118 | 495 | 102 | 489 | 2.10e-26 | 112 |
| Msa0142400 | AT5G48150.3 | 27.833 | 406 | 247 | 16 | 118 | 495 | 102 | 489 | 2.10e-26 | 112 |
| Msa0142400 | AT1G07530.1 | 26.698 | 427 | 253 | 18 | 104 | 498 | 369 | 767 | 3.06e-25 | 110 |
| Msa0142400 | AT1G21450.1 | 27.356 | 435 | 270 | 18 | 87 | 495 | 178 | 592 | 1.49e-24 | 107 |
| Msa0142400 | AT4G37650.1 | 26.531 | 392 | 250 | 14 | 139 | 498 | 146 | 531 | 3.75e-24 | 106 |
| Msa0142400 | AT2G29060.2 | 26.617 | 402 | 237 | 20 | 132 | 497 | 277 | 656 | 8.99e-23 | 102 |
| Msa0142400 | AT2G29060.1 | 26.617 | 402 | 237 | 20 | 132 | 497 | 314 | 693 | 9.00e-23 | 102 |
| Msa0142400 | AT2G37650.2 | 24.490 | 392 | 263 | 12 | 127 | 497 | 323 | 702 | 2.20e-21 | 98.2 |
| Msa0142400 | AT2G37650.1 | 24.490 | 392 | 263 | 12 | 127 | 497 | 335 | 714 | 2.55e-21 | 98.2 |
| Msa0142400 | AT4G00150.1 | 27.851 | 377 | 229 | 17 | 135 | 495 | 204 | 553 | 2.41e-20 | 94.7 |
| Msa0142400 | AT1G07520.1 | 23.907 | 389 | 256 | 14 | 139 | 498 | 318 | 695 | 4.32e-18 | 88.2 |
| Msa0142400 | AT1G07520.3 | 23.907 | 389 | 256 | 14 | 139 | 498 | 319 | 696 | 4.44e-18 | 88.2 |
| Msa0142400 | AT1G07520.2 | 23.907 | 389 | 256 | 14 | 139 | 498 | 154 | 531 | 7.46e-18 | 87.0 |
| Msa0142400 | AT1G07520.4 | 23.907 | 389 | 256 | 14 | 139 | 498 | 154 | 531 | 7.46e-18 | 87.0 |
| Msa0142400 | AT4G36710.1 | 27.100 | 369 | 249 | 14 | 138 | 495 | 125 | 484 | 1.07e-17 | 86.3 |
| Msa0142400 | AT5G52510.1 | 26.667 | 315 | 191 | 11 | 212 | 495 | 334 | 639 | 3.06e-17 | 85.5 |
| Msa0142400 | AT2G29065.1 | 24.768 | 323 | 201 | 12 | 203 | 498 | 323 | 630 | 3.73e-17 | 85.1 |
| Msa0142400 | AT1G50420.1 | 23.733 | 434 | 248 | 16 | 136 | 495 | 54 | 478 | 4.04e-17 | 84.3 |
| Msa0142400 | AT2G45160.1 | 24.365 | 394 | 226 | 17 | 141 | 495 | 278 | 638 | 7.88e-16 | 80.9 |
| Msa0142400 | AT3G49950.1 | 24.103 | 390 | 255 | 13 | 139 | 497 | 30 | 409 | 1.82e-15 | 79.0 |
| Msa0142400 | AT3G60630.1 | 24.451 | 319 | 184 | 12 | 209 | 495 | 328 | 621 | 1.60e-13 | 73.6 |
Find 77 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATACCTCTTTCTCTATA+AGG | 0.158083 | 1_4:-1306622 | None:intergenic |
| ATTTCATCTAGGATTGTATT+TGG | 0.213674 | 1_4:-1305516 | None:intergenic |
| ATTTCGTCTAGGATTGTATT+TGG | 0.226044 | 1_4:-1305576 | None:intergenic |
| CTAAACAATGCCTCGTCTTT+AGG | 0.252519 | 1_4:+1305882 | Msa0142400:CDS |
| GGAAGTTCAAGAAGAGTTAA+TGG | 0.258644 | 1_4:+1305770 | Msa0142400:CDS |
| CTGTGATTGCTGTTACTCTA+AGG | 0.272598 | 1_4:-1306208 | None:intergenic |
| GCTTGTTTGGTAAAGGGTAT+TGG | 0.274576 | 1_4:+1306792 | Msa0142400:CDS |
| AAGCTATTGGTTAGCTTGTT+TGG | 0.278423 | 1_4:+1306779 | Msa0142400:CDS |
| AACAAGCCTTGGTGATGATT+TGG | 0.290948 | 1_4:-1306453 | None:intergenic |
| CTTTGACTTCTGTTTCAATC+TGG | 0.297827 | 1_4:+1306861 | Msa0142400:CDS |
| CTTGTTTGGTAAAGGGTATT+GGG | 0.313644 | 1_4:+1306793 | Msa0142400:CDS |
| CCAGGGAAGAAGATTCTTAT+TGG | 0.318155 | 1_4:+1305745 | Msa0142400:CDS |
| GCGAAAATGTGTTTGTTTCC+AGG | 0.325069 | 1_4:+1305727 | Msa0142400:CDS |
| CAATACCTCTTTCTCTATAA+GGG | 0.331359 | 1_4:-1306621 | None:intergenic |
| TGTGGTGGAGTTACCGAAAA+AGG | 0.334912 | 1_4:+1305702 | Msa0142400:CDS |
| TATTTCACAGGCTAAGCTAT+TGG | 0.357597 | 1_4:+1306766 | Msa0142400:CDS |
| CTCATAATCCATCACATTCA+TGG | 0.366173 | 1_4:-1305397 | None:intergenic |
| TGGTTAGCTTGTTTGGTAAA+GGG | 0.385802 | 1_4:+1306786 | Msa0142400:CDS |
| TAAGGGCTAACTCCATCTTA+TGG | 0.393772 | 1_4:-1306604 | None:intergenic |
| AAGGCGATAGTTTATTGAAC+AGG | 0.393824 | 1_4:+1305907 | Msa0142400:CDS |
| CCTTATAGAGAAAGAGGTAT+TGG | 0.394224 | 1_4:+1306622 | Msa0142400:CDS |
| GATCAAACAATATTTCATCT+AGG | 0.398157 | 1_4:-1305527 | None:intergenic |
| AATCCAATGGCCACCGTTGA+TGG | 0.402840 | 1_4:+1306154 | Msa0142400:CDS |
| TTGGTTAGCTTGTTTGGTAA+AGG | 0.407587 | 1_4:+1306785 | Msa0142400:CDS |
| ATCAATGAGAAACTCCTGTT+TGG | 0.411022 | 1_4:-1306407 | None:intergenic |
| ACTCAAATCCATGTCCTTTG+TGG | 0.411956 | 1_4:+1306511 | Msa0142400:CDS |
| TTTGACTTCTGTTTCAATCT+GGG | 0.412837 | 1_4:+1306862 | Msa0142400:CDS |
| TACATCAGTGGATGCCAAAC+AGG | 0.416877 | 1_4:+1306393 | Msa0142400:CDS |
| AGCTTCGAAAATCGCTTGAT+TGG | 0.418613 | 1_4:-1306081 | None:intergenic |
| CTAAGCTACATTCATGCAGC+TGG | 0.426844 | 1_4:-1305455 | None:intergenic |
| CTTATAGAGAAAGAGGTATT+GGG | 0.435957 | 1_4:+1306623 | Msa0142400:CDS |
| GAGATAAGAGATGTTGTGAT+TGG | 0.464477 | 1_4:-1305554 | None:intergenic |
| CAACCATCAACGGTGGCCAT+TGG | 0.475147 | 1_4:-1306157 | None:intergenic |
| CCAATAAGAATCTTCTTCCC+TGG | 0.475253 | 1_4:-1305745 | None:intergenic |
| GAGACATGAGATCTTCTGCT+TGG | 0.478088 | 1_4:-1305494 | None:intergenic |
| CGAAAATGTGTTTGTTTCCA+GGG | 0.485498 | 1_4:+1305728 | Msa0142400:CDS |
| GTTAGCCCTTATAGAGAAAG+AGG | 0.487244 | 1_4:+1306616 | Msa0142400:CDS |
| AATGCCTCGTCTTTAGGAAA+AGG | 0.493064 | 1_4:+1305888 | Msa0142400:CDS |
| TCGACTAAAACAACAAGCCT+TGG | 0.505560 | 1_4:-1306464 | None:intergenic |
| ACATGTTCTGAATGGAACTT+AGG | 0.509744 | 1_4:-1305978 | None:intergenic |
| GCAATATGAGAACTGTAAGT+TGG | 0.510443 | 1_4:+1306817 | Msa0142400:CDS |
| AAAAGAGGAGAGAATATTGT+GGG | 0.510893 | 1_4:+1306685 | Msa0142400:CDS |
| GAAGCCTCAGTTCAACAAAC+AGG | 0.521298 | 1_4:+1306245 | Msa0142400:CDS |
| TTACTCATATTATAATCTGT+TGG | 0.522232 | 1_4:-1306887 | None:intergenic |
| ACTGTAAGTTGGCTTTGTGT+TGG | 0.525441 | 1_4:+1306828 | Msa0142400:CDS |
| GAATTCAAAGAAATTGAACT+TGG | 0.527275 | 1_4:+1306344 | Msa0142400:CDS |
| CACGTTCGATACAGTAATGA+TGG | 0.531854 | 1_4:+1306310 | Msa0142400:CDS |
| GGAAGAAGATTCTTATTGGA+AGG | 0.535054 | 1_4:+1305749 | Msa0142400:CDS |
| GTGTAGAAACATGTTCTGAA+TGG | 0.541579 | 1_4:-1305986 | None:intergenic |
| CTTGATCGAAGATTTCGTCT+AGG | 0.546863 | 1_4:-1305587 | None:intergenic |
| GCAGCTGGTTCATGCAAGGA+GGG | 0.553162 | 1_4:-1305440 | None:intergenic |
| AGATCTTCTGCTTGGAGTGG+TGG | 0.557382 | 1_4:-1305486 | None:intergenic |
| TTGCTGCAGCAATTCTTGCA+TGG | 0.560772 | 1_4:-1305616 | None:intergenic |
| GATTCATGATATTGAAGTCG+AGG | 0.561299 | 1_4:-1305647 | None:intergenic |
| CATGAATCATGAACAAGCAA+TGG | 0.561832 | 1_4:+1305662 | Msa0142400:CDS |
| TCTGTGGAGTAGCCATAAGA+TGG | 0.563300 | 1_4:+1306592 | Msa0142400:CDS |
| TTGAAGGGGTATAGACGTGT+TGG | 0.563890 | 1_4:+1306728 | Msa0142400:CDS |
| ACTATCTACCATGAATGTGA+TGG | 0.583158 | 1_4:+1305389 | None:intergenic |
| TCTGCCTGTTTGTTGAACTG+AGG | 0.584240 | 1_4:-1306249 | None:intergenic |
| TGTGATTGCTGTTACTCTAA+GGG | 0.585072 | 1_4:-1306207 | None:intergenic |
| GAGTACATGCAATATTTCAC+AGG | 0.587078 | 1_4:+1306754 | Msa0142400:CDS |
| ATTACTGTATCGAACGTGAA+CGG | 0.593883 | 1_4:-1306305 | None:intergenic |
| CAGTTCAACAAACAGGCAGA+AGG | 0.599250 | 1_4:+1306252 | Msa0142400:CDS |
| TCATGCAGCTGGTTCATGCA+AGG | 0.599943 | 1_4:-1305444 | None:intergenic |
| TGCAGCTGGTTCATGCAAGG+AGG | 0.602202 | 1_4:-1305441 | None:intergenic |
| ATTGCAAAGTCAACCATCAA+CGG | 0.607337 | 1_4:-1306167 | None:intergenic |
| CAGATTGAAACAGAAGTCAA+AGG | 0.620209 | 1_4:-1306860 | None:intergenic |
| ATGAGATCTTCTGCTTGGAG+TGG | 0.651380 | 1_4:-1305489 | None:intergenic |
| ATATCATGGAGGGAATCCAA+TGG | 0.669550 | 1_4:+1306141 | Msa0142400:CDS |
| CTAGAGAATGAATTGTGTGG+TGG | 0.675354 | 1_4:+1305687 | Msa0142400:CDS |
| CAGCTGGTTCATGCAAGGAG+GGG | 0.677543 | 1_4:-1305439 | None:intergenic |
| ATTCACTTGTAAGTACTCTG+TGG | 0.679195 | 1_4:+1306576 | Msa0142400:CDS |
| TCAATTGTATGATACATCAG+TGG | 0.691913 | 1_4:+1306381 | Msa0142400:CDS |
| GCAAAGTCAACCATCAACGG+TGG | 0.711871 | 1_4:-1306164 | None:intergenic |
| ACGTAACCAAATCATCACCA+AGG | 0.735440 | 1_4:+1306447 | Msa0142400:CDS |
| TAGAGTAACAGCAATCACAG+TGG | 0.741841 | 1_4:+1306211 | Msa0142400:CDS |
| GCTCTAGAGAATGAATTGTG+TGG | 0.769887 | 1_4:+1305684 | Msa0142400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTTATTCATTGA+AGG | + | chr1_4:1306712-1306731 | Msa0142400:CDS | 15.0% |
| !!! | AGATTTTTTTATTCATTGAA+GGG | + | chr1_4:1306713-1306732 | Msa0142400:CDS | 15.0% |
| !!! | AAGATTTTTTTATTCATTGA+AGG | + | chr1_4:1306712-1306731 | Msa0142400:CDS | 15.0% |
| !!! | AGATTTTTTTATTCATTGAA+GGG | + | chr1_4:1306713-1306732 | Msa0142400:CDS | 15.0% |
| !!! | AAATGAGCAAATTTTACATA+GGG | - | chr1_4:1306056-1306075 | None:intergenic | 20.0% |
| !!! | AAAATGAGCAAATTTTACAT+AGG | - | chr1_4:1306057-1306076 | None:intergenic | 20.0% |
| !!! | GATTTTTTTATTCATTGAAG+GGG | + | chr1_4:1306714-1306733 | Msa0142400:CDS | 20.0% |
| !! | TTACTCATATTATAATCTGT+TGG | - | chr1_4:1306890-1306909 | None:intergenic | 20.0% |
| !!! | AAATGAGCAAATTTTACATA+GGG | - | chr1_4:1306056-1306075 | None:intergenic | 20.0% |
| !!! | AAAATGAGCAAATTTTACAT+AGG | - | chr1_4:1306057-1306076 | None:intergenic | 20.0% |
| !!! | GATTTTTTTATTCATTGAAG+GGG | + | chr1_4:1306714-1306733 | Msa0142400:CDS | 20.0% |
| !! | TTACTCATATTATAATCTGT+TGG | - | chr1_4:1306890-1306909 | None:intergenic | 20.0% |
| !! | ATTTCATCTAGGATTGTATT+TGG | - | chr1_4:1305519-1305538 | None:intergenic | 25.0% |
| ! | GATCAAACAATATTTCATCT+AGG | - | chr1_4:1305530-1305549 | None:intergenic | 25.0% |
| !!! | TGTCATTGATTTTGATATCA+TGG | + | chr1_4:1306127-1306146 | Msa0142400:CDS | 25.0% |
| !!! | ATTGATTTTGATATCATGGA+GGG | + | chr1_4:1306131-1306150 | Msa0142400:CDS | 25.0% |
| ! | GAATTCAAAGAAATTGAACT+TGG | + | chr1_4:1306344-1306363 | Msa0142400:CDS | 25.0% |
| !! | ATTTCATCTAGGATTGTATT+TGG | - | chr1_4:1305519-1305538 | None:intergenic | 25.0% |
| ! | GATCAAACAATATTTCATCT+AGG | - | chr1_4:1305530-1305549 | None:intergenic | 25.0% |
| !!! | TGTCATTGATTTTGATATCA+TGG | + | chr1_4:1306127-1306146 | Msa0142400:CDS | 25.0% |
| !!! | ATTGATTTTGATATCATGGA+GGG | + | chr1_4:1306131-1306150 | Msa0142400:CDS | 25.0% |
| ! | GAATTCAAAGAAATTGAACT+TGG | + | chr1_4:1306344-1306363 | Msa0142400:CDS | 25.0% |
| ! | ATTTCGTCTAGGATTGTATT+TGG | - | chr1_4:1305579-1305598 | None:intergenic | 30.0% |
| ! | TTAGTTGATCTTTTGCTGAT+AGG | + | chr1_4:1305804-1305823 | Msa0142400:CDS | 30.0% |
| !!! | CATTGATTTTGATATCATGG+AGG | + | chr1_4:1306130-1306149 | Msa0142400:CDS | 30.0% |
| TCAATTGTATGATACATCAG+TGG | + | chr1_4:1306381-1306400 | Msa0142400:CDS | 30.0% | |
| CAATACCTCTTTCTCTATAA+GGG | - | chr1_4:1306624-1306643 | None:intergenic | 30.0% | |
| !! | CTTATAGAGAAAGAGGTATT+GGG | + | chr1_4:1306623-1306642 | Msa0142400:CDS | 30.0% |
| AAAAAGAGGAGAGAATATTG+TGG | + | chr1_4:1306684-1306703 | Msa0142400:CDS | 30.0% | |
| AAAAGAGGAGAGAATATTGT+GGG | + | chr1_4:1306685-1306704 | Msa0142400:CDS | 30.0% | |
| ! | TTTGACTTCTGTTTCAATCT+GGG | + | chr1_4:1306862-1306881 | Msa0142400:CDS | 30.0% |
| ! | ATTTCGTCTAGGATTGTATT+TGG | - | chr1_4:1305579-1305598 | None:intergenic | 30.0% |
| ! | TTAGTTGATCTTTTGCTGAT+AGG | + | chr1_4:1305804-1305823 | Msa0142400:CDS | 30.0% |
| !!! | CATTGATTTTGATATCATGG+AGG | + | chr1_4:1306130-1306149 | Msa0142400:CDS | 30.0% |
| TCAATTGTATGATACATCAG+TGG | + | chr1_4:1306381-1306400 | Msa0142400:CDS | 30.0% | |
| CAATACCTCTTTCTCTATAA+GGG | - | chr1_4:1306624-1306643 | None:intergenic | 30.0% | |
| !! | CTTATAGAGAAAGAGGTATT+GGG | + | chr1_4:1306623-1306642 | Msa0142400:CDS | 30.0% |
| AAAAAGAGGAGAGAATATTG+TGG | + | chr1_4:1306684-1306703 | Msa0142400:CDS | 30.0% | |
| AAAAGAGGAGAGAATATTGT+GGG | + | chr1_4:1306685-1306704 | Msa0142400:CDS | 30.0% | |
| ! | TTTGACTTCTGTTTCAATCT+GGG | + | chr1_4:1306862-1306881 | Msa0142400:CDS | 30.0% |
| GAGATAAGAGATGTTGTGAT+TGG | - | chr1_4:1305557-1305576 | None:intergenic | 35.0% | |
| GATTCATGATATTGAAGTCG+AGG | - | chr1_4:1305650-1305669 | None:intergenic | 35.0% | |
| CATGAATCATGAACAAGCAA+TGG | + | chr1_4:1305662-1305681 | Msa0142400:CDS | 35.0% | |
| ! | TGGAAACAAACACATTTTCG+CGG | - | chr1_4:1305728-1305747 | None:intergenic | 35.0% |
| CGAAAATGTGTTTGTTTCCA+GGG | + | chr1_4:1305728-1305747 | Msa0142400:CDS | 35.0% | |
| GGAAGAAGATTCTTATTGGA+AGG | + | chr1_4:1305749-1305768 | Msa0142400:CDS | 35.0% | |
| GGAAGTTCAAGAAGAGTTAA+TGG | + | chr1_4:1305770-1305789 | Msa0142400:CDS | 35.0% | |
| AAGGCGATAGTTTATTGAAC+AGG | + | chr1_4:1305907-1305926 | Msa0142400:CDS | 35.0% | |
| ! | TTGTGTCTTTTCTTTACGCA+AGG | + | chr1_4:1305930-1305949 | Msa0142400:CDS | 35.0% |
| ! | ACATGTTCTGAATGGAACTT+AGG | - | chr1_4:1305981-1306000 | None:intergenic | 35.0% |
| ! | GTGTAGAAACATGTTCTGAA+TGG | - | chr1_4:1305989-1306008 | None:intergenic | 35.0% |
| ATTGCAAAGTCAACCATCAA+CGG | - | chr1_4:1306170-1306189 | None:intergenic | 35.0% | |
| ! | TGTGATTGCTGTTACTCTAA+GGG | - | chr1_4:1306210-1306229 | None:intergenic | 35.0% |
| ATTACTGTATCGAACGTGAA+CGG | - | chr1_4:1306308-1306327 | None:intergenic | 35.0% | |
| ATCAATGAGAAACTCCTGTT+TGG | - | chr1_4:1306410-1306429 | None:intergenic | 35.0% | |
| ATTCACTTGTAAGTACTCTG+TGG | + | chr1_4:1306576-1306595 | Msa0142400:CDS | 35.0% | |
| CCAATACCTCTTTCTCTATA+AGG | - | chr1_4:1306625-1306644 | None:intergenic | 35.0% | |
| ! | CCTTATAGAGAAAGAGGTAT+TGG | + | chr1_4:1306622-1306641 | Msa0142400:CDS | 35.0% |
| ACAGTTTCCTTGTGAAAAAG+AGG | + | chr1_4:1306670-1306689 | Msa0142400:CDS | 35.0% | |
| !! | ATTCTCTCCTCTTTTTCACA+AGG | - | chr1_4:1306680-1306699 | None:intergenic | 35.0% |
| GAGTACATGCAATATTTCAC+AGG | + | chr1_4:1306754-1306773 | Msa0142400:CDS | 35.0% | |
| TATTTCACAGGCTAAGCTAT+TGG | + | chr1_4:1306766-1306785 | Msa0142400:CDS | 35.0% | |
| !! | AAGCTATTGGTTAGCTTGTT+TGG | + | chr1_4:1306779-1306798 | Msa0142400:CDS | 35.0% |
| !! | TTGGTTAGCTTGTTTGGTAA+AGG | + | chr1_4:1306785-1306804 | Msa0142400:CDS | 35.0% |
| !! | TGGTTAGCTTGTTTGGTAAA+GGG | + | chr1_4:1306786-1306805 | Msa0142400:CDS | 35.0% |
| !! | CTTGTTTGGTAAAGGGTATT+GGG | + | chr1_4:1306793-1306812 | Msa0142400:CDS | 35.0% |
| GCAATATGAGAACTGTAAGT+TGG | + | chr1_4:1306817-1306836 | Msa0142400:CDS | 35.0% | |
| CAGATTGAAACAGAAGTCAA+AGG | - | chr1_4:1306863-1306882 | None:intergenic | 35.0% | |
| ! | CTTTGACTTCTGTTTCAATC+TGG | + | chr1_4:1306861-1306880 | Msa0142400:CDS | 35.0% |
| GAGATAAGAGATGTTGTGAT+TGG | - | chr1_4:1305557-1305576 | None:intergenic | 35.0% | |
| GATTCATGATATTGAAGTCG+AGG | - | chr1_4:1305650-1305669 | None:intergenic | 35.0% | |
| CATGAATCATGAACAAGCAA+TGG | + | chr1_4:1305662-1305681 | Msa0142400:CDS | 35.0% | |
| ! | TGGAAACAAACACATTTTCG+CGG | - | chr1_4:1305728-1305747 | None:intergenic | 35.0% |
| CGAAAATGTGTTTGTTTCCA+GGG | + | chr1_4:1305728-1305747 | Msa0142400:CDS | 35.0% | |
| GGAAGAAGATTCTTATTGGA+AGG | + | chr1_4:1305749-1305768 | Msa0142400:CDS | 35.0% | |
| GGAAGTTCAAGAAGAGTTAA+TGG | + | chr1_4:1305770-1305789 | Msa0142400:CDS | 35.0% | |
| AAGGCGATAGTTTATTGAAC+AGG | + | chr1_4:1305907-1305926 | Msa0142400:CDS | 35.0% | |
| ! | TTGTGTCTTTTCTTTACGCA+AGG | + | chr1_4:1305930-1305949 | Msa0142400:CDS | 35.0% |
| ! | ACATGTTCTGAATGGAACTT+AGG | - | chr1_4:1305981-1306000 | None:intergenic | 35.0% |
| ! | GTGTAGAAACATGTTCTGAA+TGG | - | chr1_4:1305989-1306008 | None:intergenic | 35.0% |
| ATTGCAAAGTCAACCATCAA+CGG | - | chr1_4:1306170-1306189 | None:intergenic | 35.0% | |
| ! | TGTGATTGCTGTTACTCTAA+GGG | - | chr1_4:1306210-1306229 | None:intergenic | 35.0% |
| ATTACTGTATCGAACGTGAA+CGG | - | chr1_4:1306308-1306327 | None:intergenic | 35.0% | |
| ATCAATGAGAAACTCCTGTT+TGG | - | chr1_4:1306410-1306429 | None:intergenic | 35.0% | |
| ATTCACTTGTAAGTACTCTG+TGG | + | chr1_4:1306576-1306595 | Msa0142400:CDS | 35.0% | |
| CCAATACCTCTTTCTCTATA+AGG | - | chr1_4:1306625-1306644 | None:intergenic | 35.0% | |
| ! | CCTTATAGAGAAAGAGGTAT+TGG | + | chr1_4:1306622-1306641 | Msa0142400:CDS | 35.0% |
| ACAGTTTCCTTGTGAAAAAG+AGG | + | chr1_4:1306670-1306689 | Msa0142400:CDS | 35.0% | |
| !! | ATTCTCTCCTCTTTTTCACA+AGG | - | chr1_4:1306680-1306699 | None:intergenic | 35.0% |
| GAGTACATGCAATATTTCAC+AGG | + | chr1_4:1306754-1306773 | Msa0142400:CDS | 35.0% | |
| TATTTCACAGGCTAAGCTAT+TGG | + | chr1_4:1306766-1306785 | Msa0142400:CDS | 35.0% | |
| !! | AAGCTATTGGTTAGCTTGTT+TGG | + | chr1_4:1306779-1306798 | Msa0142400:CDS | 35.0% |
| !! | TTGGTTAGCTTGTTTGGTAA+AGG | + | chr1_4:1306785-1306804 | Msa0142400:CDS | 35.0% |
| !! | TGGTTAGCTTGTTTGGTAAA+GGG | + | chr1_4:1306786-1306805 | Msa0142400:CDS | 35.0% |
| !! | CTTGTTTGGTAAAGGGTATT+GGG | + | chr1_4:1306793-1306812 | Msa0142400:CDS | 35.0% |
| GCAATATGAGAACTGTAAGT+TGG | + | chr1_4:1306817-1306836 | Msa0142400:CDS | 35.0% | |
| CAGATTGAAACAGAAGTCAA+AGG | - | chr1_4:1306863-1306882 | None:intergenic | 35.0% | |
| ! | CTTTGACTTCTGTTTCAATC+TGG | + | chr1_4:1306861-1306880 | Msa0142400:CDS | 35.0% |
| CTTGATCGAAGATTTCGTCT+AGG | - | chr1_4:1305590-1305609 | None:intergenic | 40.0% | |
| !! | GCTCTAGAGAATGAATTGTG+TGG | + | chr1_4:1305684-1305703 | Msa0142400:CDS | 40.0% |
| CTAGAGAATGAATTGTGTGG+TGG | + | chr1_4:1305687-1305706 | Msa0142400:CDS | 40.0% | |
| GCGAAAATGTGTTTGTTTCC+AGG | + | chr1_4:1305727-1305746 | Msa0142400:CDS | 40.0% | |
| CCAATAAGAATCTTCTTCCC+TGG | - | chr1_4:1305748-1305767 | None:intergenic | 40.0% | |
| CCAGGGAAGAAGATTCTTAT+TGG | + | chr1_4:1305745-1305764 | Msa0142400:CDS | 40.0% | |
| CTAAACAATGCCTCGTCTTT+AGG | + | chr1_4:1305882-1305901 | Msa0142400:CDS | 40.0% | |
| ! | AATGCCTCGTCTTTAGGAAA+AGG | + | chr1_4:1305888-1305907 | Msa0142400:CDS | 40.0% |
| AGCTTCGAAAATCGCTTGAT+TGG | - | chr1_4:1306084-1306103 | None:intergenic | 40.0% | |
| ATATCATGGAGGGAATCCAA+TGG | + | chr1_4:1306141-1306160 | Msa0142400:CDS | 40.0% | |
| ! | CTGTGATTGCTGTTACTCTA+AGG | - | chr1_4:1306211-1306230 | None:intergenic | 40.0% |
| TAGAGTAACAGCAATCACAG+TGG | + | chr1_4:1306211-1306230 | Msa0142400:CDS | 40.0% | |
| CACGTTCGATACAGTAATGA+TGG | + | chr1_4:1306310-1306329 | Msa0142400:CDS | 40.0% | |
| ACGTAACCAAATCATCACCA+AGG | + | chr1_4:1306447-1306466 | Msa0142400:CDS | 40.0% | |
| !! | AACAAGCCTTGGTGATGATT+TGG | - | chr1_4:1306456-1306475 | None:intergenic | 40.0% |
| TCGACTAAAACAACAAGCCT+TGG | - | chr1_4:1306467-1306486 | None:intergenic | 40.0% | |
| ACTCAAATCCATGTCCTTTG+TGG | + | chr1_4:1306511-1306530 | Msa0142400:CDS | 40.0% | |
| GAAAAACTCCACAAAGGACA+TGG | - | chr1_4:1306522-1306541 | None:intergenic | 40.0% | |
| CTCACAGAAAAACTCCACAA+AGG | - | chr1_4:1306528-1306547 | None:intergenic | 40.0% | |
| ! | CTTTGTGGAGTTTTTCTGTG+AGG | + | chr1_4:1306526-1306545 | Msa0142400:CDS | 40.0% |
| TAAGGGCTAACTCCATCTTA+TGG | - | chr1_4:1306607-1306626 | None:intergenic | 40.0% | |
| GTTAGCCCTTATAGAGAAAG+AGG | + | chr1_4:1306616-1306635 | Msa0142400:CDS | 40.0% | |
| ! | GCTTGTTTGGTAAAGGGTAT+TGG | + | chr1_4:1306792-1306811 | Msa0142400:CDS | 40.0% |
| !! | ACTGTAAGTTGGCTTTGTGT+TGG | + | chr1_4:1306828-1306847 | Msa0142400:CDS | 40.0% |
| CTTGATCGAAGATTTCGTCT+AGG | - | chr1_4:1305590-1305609 | None:intergenic | 40.0% | |
| !! | GCTCTAGAGAATGAATTGTG+TGG | + | chr1_4:1305684-1305703 | Msa0142400:CDS | 40.0% |
| CTAGAGAATGAATTGTGTGG+TGG | + | chr1_4:1305687-1305706 | Msa0142400:CDS | 40.0% | |
| GCGAAAATGTGTTTGTTTCC+AGG | + | chr1_4:1305727-1305746 | Msa0142400:CDS | 40.0% | |
| CCAATAAGAATCTTCTTCCC+TGG | - | chr1_4:1305748-1305767 | None:intergenic | 40.0% | |
| CCAGGGAAGAAGATTCTTAT+TGG | + | chr1_4:1305745-1305764 | Msa0142400:CDS | 40.0% | |
| CTAAACAATGCCTCGTCTTT+AGG | + | chr1_4:1305882-1305901 | Msa0142400:CDS | 40.0% | |
| ! | AATGCCTCGTCTTTAGGAAA+AGG | + | chr1_4:1305888-1305907 | Msa0142400:CDS | 40.0% |
| AGCTTCGAAAATCGCTTGAT+TGG | - | chr1_4:1306084-1306103 | None:intergenic | 40.0% | |
| ATATCATGGAGGGAATCCAA+TGG | + | chr1_4:1306141-1306160 | Msa0142400:CDS | 40.0% | |
| ! | CTGTGATTGCTGTTACTCTA+AGG | - | chr1_4:1306211-1306230 | None:intergenic | 40.0% |
| TAGAGTAACAGCAATCACAG+TGG | + | chr1_4:1306211-1306230 | Msa0142400:CDS | 40.0% | |
| CACGTTCGATACAGTAATGA+TGG | + | chr1_4:1306310-1306329 | Msa0142400:CDS | 40.0% | |
| ACGTAACCAAATCATCACCA+AGG | + | chr1_4:1306447-1306466 | Msa0142400:CDS | 40.0% | |
| !! | AACAAGCCTTGGTGATGATT+TGG | - | chr1_4:1306456-1306475 | None:intergenic | 40.0% |
| TCGACTAAAACAACAAGCCT+TGG | - | chr1_4:1306467-1306486 | None:intergenic | 40.0% | |
| ACTCAAATCCATGTCCTTTG+TGG | + | chr1_4:1306511-1306530 | Msa0142400:CDS | 40.0% | |
| GAAAAACTCCACAAAGGACA+TGG | - | chr1_4:1306522-1306541 | None:intergenic | 40.0% | |
| CTCACAGAAAAACTCCACAA+AGG | - | chr1_4:1306528-1306547 | None:intergenic | 40.0% | |
| ! | CTTTGTGGAGTTTTTCTGTG+AGG | + | chr1_4:1306526-1306545 | Msa0142400:CDS | 40.0% |
| TAAGGGCTAACTCCATCTTA+TGG | - | chr1_4:1306607-1306626 | None:intergenic | 40.0% | |
| GTTAGCCCTTATAGAGAAAG+AGG | + | chr1_4:1306616-1306635 | Msa0142400:CDS | 40.0% | |
| ! | GCTTGTTTGGTAAAGGGTAT+TGG | + | chr1_4:1306792-1306811 | Msa0142400:CDS | 40.0% |
| !! | ACTGTAAGTTGGCTTTGTGT+TGG | + | chr1_4:1306828-1306847 | Msa0142400:CDS | 40.0% |
| CTAAGCTACATTCATGCAGC+TGG | - | chr1_4:1305458-1305477 | None:intergenic | 45.0% | |
| ATGAGATCTTCTGCTTGGAG+TGG | - | chr1_4:1305492-1305511 | None:intergenic | 45.0% | |
| GAGACATGAGATCTTCTGCT+TGG | - | chr1_4:1305497-1305516 | None:intergenic | 45.0% | |
| TTGCTGCAGCAATTCTTGCA+TGG | - | chr1_4:1305619-1305638 | None:intergenic | 45.0% | |
| ! | TGTGGTGGAGTTACCGAAAA+AGG | + | chr1_4:1305702-1305721 | Msa0142400:CDS | 45.0% |
| ! | CACATTTTCGCGGCCTTTTT+CGG | - | chr1_4:1305718-1305737 | None:intergenic | 45.0% |
| ! | ATCGCCTTTTCCTAAAGACG+AGG | - | chr1_4:1305895-1305914 | None:intergenic | 45.0% |
| GAAGCCTCAGTTCAACAAAC+AGG | + | chr1_4:1306245-1306264 | Msa0142400:CDS | 45.0% | |
| ! | TCTGCCTGTTTGTTGAACTG+AGG | - | chr1_4:1306252-1306271 | None:intergenic | 45.0% |
| CAGTTCAACAAACAGGCAGA+AGG | + | chr1_4:1306252-1306271 | Msa0142400:CDS | 45.0% | |
| TACATCAGTGGATGCCAAAC+AGG | + | chr1_4:1306393-1306412 | Msa0142400:CDS | 45.0% | |
| TCTGTGGAGTAGCCATAAGA+TGG | + | chr1_4:1306592-1306611 | Msa0142400:CDS | 45.0% | |
| ! | TTGAAGGGGTATAGACGTGT+TGG | + | chr1_4:1306728-1306747 | Msa0142400:CDS | 45.0% |
| CTAAGCTACATTCATGCAGC+TGG | - | chr1_4:1305458-1305477 | None:intergenic | 45.0% | |
| ATGAGATCTTCTGCTTGGAG+TGG | - | chr1_4:1305492-1305511 | None:intergenic | 45.0% | |
| GAGACATGAGATCTTCTGCT+TGG | - | chr1_4:1305497-1305516 | None:intergenic | 45.0% | |
| TTGCTGCAGCAATTCTTGCA+TGG | - | chr1_4:1305619-1305638 | None:intergenic | 45.0% | |
| ! | TGTGGTGGAGTTACCGAAAA+AGG | + | chr1_4:1305702-1305721 | Msa0142400:CDS | 45.0% |
| ! | CACATTTTCGCGGCCTTTTT+CGG | - | chr1_4:1305718-1305737 | None:intergenic | 45.0% |
| ! | ATCGCCTTTTCCTAAAGACG+AGG | - | chr1_4:1305895-1305914 | None:intergenic | 45.0% |
| GAAGCCTCAGTTCAACAAAC+AGG | + | chr1_4:1306245-1306264 | Msa0142400:CDS | 45.0% | |
| ! | TCTGCCTGTTTGTTGAACTG+AGG | - | chr1_4:1306252-1306271 | None:intergenic | 45.0% |
| CAGTTCAACAAACAGGCAGA+AGG | + | chr1_4:1306252-1306271 | Msa0142400:CDS | 45.0% | |
| TACATCAGTGGATGCCAAAC+AGG | + | chr1_4:1306393-1306412 | Msa0142400:CDS | 45.0% | |
| TCTGTGGAGTAGCCATAAGA+TGG | + | chr1_4:1306592-1306611 | Msa0142400:CDS | 45.0% | |
| ! | TTGAAGGGGTATAGACGTGT+TGG | + | chr1_4:1306728-1306747 | Msa0142400:CDS | 45.0% |
| ! | TCATGCAGCTGGTTCATGCA+AGG | - | chr1_4:1305447-1305466 | None:intergenic | 50.0% |
| AGATCTTCTGCTTGGAGTGG+TGG | - | chr1_4:1305489-1305508 | None:intergenic | 50.0% | |
| ! | GCGATTTTCGAAGCTACAGC+TGG | + | chr1_4:1306089-1306108 | Msa0142400:CDS | 50.0% |
| AATCCAATGGCCACCGTTGA+TGG | + | chr1_4:1306154-1306173 | Msa0142400:CDS | 50.0% | |
| GCAAAGTCAACCATCAACGG+TGG | - | chr1_4:1306167-1306186 | None:intergenic | 50.0% | |
| ! | TCATGCAGCTGGTTCATGCA+AGG | - | chr1_4:1305447-1305466 | None:intergenic | 50.0% |
| AGATCTTCTGCTTGGAGTGG+TGG | - | chr1_4:1305489-1305508 | None:intergenic | 50.0% | |
| ! | GCGATTTTCGAAGCTACAGC+TGG | + | chr1_4:1306089-1306108 | Msa0142400:CDS | 50.0% |
| AATCCAATGGCCACCGTTGA+TGG | + | chr1_4:1306154-1306173 | Msa0142400:CDS | 50.0% | |
| GCAAAGTCAACCATCAACGG+TGG | - | chr1_4:1306167-1306186 | None:intergenic | 50.0% | |
| ! | CAGCTGGTTCATGCAAGGAG+GGG | - | chr1_4:1305442-1305461 | None:intergenic | 55.0% |
| ! | GCAGCTGGTTCATGCAAGGA+GGG | - | chr1_4:1305443-1305462 | None:intergenic | 55.0% |
| ! | TGCAGCTGGTTCATGCAAGG+AGG | - | chr1_4:1305444-1305463 | None:intergenic | 55.0% |
| CAACCATCAACGGTGGCCAT+TGG | - | chr1_4:1306160-1306179 | None:intergenic | 55.0% | |
| ! | CAGCTGGTTCATGCAAGGAG+GGG | - | chr1_4:1305442-1305461 | None:intergenic | 55.0% |
| ! | GCAGCTGGTTCATGCAAGGA+GGG | - | chr1_4:1305443-1305462 | None:intergenic | 55.0% |
| ! | TGCAGCTGGTTCATGCAAGG+AGG | - | chr1_4:1305444-1305463 | None:intergenic | 55.0% |
| CAACCATCAACGGTGGCCAT+TGG | - | chr1_4:1306160-1306179 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 1305399 | 1306922 | 1305399 | ID=Msa0142400;Name=Msa0142400 |
| chr1_4 | mRNA | 1305399 | 1306922 | 1305399 | ID=Msa0142400-mRNA-1;Parent=Msa0142400;Name=Msa0142400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|507 |
| chr1_4 | exon | 1305399 | 1306922 | 1305399 | ID=Msa0142400-mRNA-1:exon:428;Parent=Msa0142400-mRNA-1 |
| chr1_4 | CDS | 1305399 | 1306922 | 1305399 | ID=Msa0142400-mRNA-1:cds;Parent=Msa0142400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
